Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_069586
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 735196
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Found at i:25748 original size:36 final size:36
Alignment explanation
Indices: 25707--25784 Score: 156
Period size: 36 Copynumber: 2.2 Consensus size: 36
25697 CTTTCTCATA
25707 TTTCTTATTTTTCTGGTTAGAGTCTCACTTCTTCCT
1 TTTCTTATTTTTCTGGTTAGAGTCTCACTTCTTCCT
25743 TTTCTTATTTTTCTGGTTAGAGTCTCACTTCTTCCT
1 TTTCTTATTTTTCTGGTTAGAGTCTCACTTCTTCCT
25779 TTTCTT
1 TTTCTT
25785 CTTTCTCATA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 42 1.00
ACGTcount: A:0.10, C:0.22, G:0.10, T:0.58
Consensus pattern (36 bp):
TTTCTTATTTTTCTGGTTAGAGTCTCACTTCTTCCT
Left flanking sequence: Indices 25207 -- 25706
GAAATCGTTCGGCCGCTTCAAGTGGTGTATTCTCGTACCATACGAGAACTCCACCGGGATGGTTC
TTGTTCGTATATGACATTATGTCGGGTCGGCTAGGCCTTGCCAGATGGGTGCCATAGACAAGAAA
GAAGGAAAGGGAATTGGATTCCTCTTCTCTTTATCTACGTTCTGCAATTAGATAGAACCTGTCGG
TCTGAAACTGAACTCTTAGATTAGTAGGAAAGGCAGTGAGCGGCGCACAGGTTCGATTCCCGGCC
GTGACATCAATGACGAGTACGAATTAAATGTGTTAAACATATTGCTAGCATGATTTGCCCCTCCA
AGCATAGTCCAATATCCCATTCACTCTAGTCAGATAGGATCGTAGGCGATCTGACAGTTACCGAC
TCTCCGGCTCCATTTCGGTGCACGATTGGAGAGTTCATTGGGCCCGCCGCTTTCATGATTCACTC
ACTGACTAAAGTAAAGAAAGAGGCTCTTTTCTCTTCTTTCTCATA
Right flanking sequence: Indices 25785 -- 26284
CTTTCTCATATTCTCCCGGCTTTTCCTGTCGAAATGAAATAGAATAAGATAAGAGGAAGAAGGTG
AGGCTACCAGCTTTGGTAGGAGAGAAAAGTCTCAATTCAATCTAGATATGAATTGAGACGAAAGC
TTGACAAGCCCATTCATTTAAGAAGGAAAGCGAGAAGTTAGTCGAGCACAACCTTCCAATTAAGC
AAGGGGAAAGCCCCGTGAGCAGCCACCAAGAAGAATGGAACCGTTGGTCTAAGGATCTTCACTAT
TGGGCTTTTAGCTTATGAGATCCGGGGTTGGGGAATTCCCCGATCCAGTCCTTTCTTGAGTACTG
GAGTTTAGTTTCACAATCCAGATGCGAGGGAACCATTATTCAAGAAATCCTGCCTTTGATAGTTA
TACTAGTTCCATCCTTGTGCTGGGCGGAGGCAAGGCGGATAGAAAGAAAAGAAAGAGTAGGCCTT
ACCCTTTAGCTAGCCCCTAGGCGAAGGAAAGAAAGAGGGGTAGCT
Found at i:43238 original size:28 final size:28
Alignment explanation
Indices: 43206--43295 Score: 180
Period size: 28 Copynumber: 3.2 Consensus size: 28
43196 CGAGTGACCA
43206 CCCCTCCCCCTATGGTCGAGCTGCTTCG
1 CCCCTCCCCCTATGGTCGAGCTGCTTCG
43234 CCCCTCCCCCTATGGTCGAGCTGCTTCG
1 CCCCTCCCCCTATGGTCGAGCTGCTTCG
43262 CCCCTCCCCCTATGGTCGAGCTGCTTCG
1 CCCCTCCCCCTATGGTCGAGCTGCTTCG
43290 CCCCTC
1 CCCCTC
43296 TCCTGACAAG
Statistics
Matches: 62, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 62 1.00
ACGTcount: A:0.07, C:0.49, G:0.20, T:0.24
Consensus pattern (28 bp):
CCCCTCCCCCTATGGTCGAGCTGCTTCG
Left flanking sequence: Indices 42706 -- 43205
GTCTTAAAAAAGTGCCCTATCGCGTAAAGCCAAGTATGTGTGGCCCGTCTTCGTGATTTCCCCCC
TACACGCTTACCCTCTCGCGGATGTAACCCTTTCCCTATCGGTCGAGCTATTTCAAAAGCGGGTT
CGCCAGGACCTACTAGTGATAGAAAGACGGATAATGTTTAATGAGGGTTGGAGACAGGTTTCGAG
TCGCCCAATTCAGTTGTCACGGTTTAATGGTGGTAAATCTATAGTCCAGAGGTGGGTCTCGACTG
ACTTTCCTTTAAGAGGGTGCCTTTTTTTCGTAGCAGAAAGAGGGCTTGGGCAACTAAATCACGTT
CGTACGAAAACGAGTTGGAATACTATTTCCGATAGGGAAGCCGGGAGCGAAAGCCAACAGGCGAG
GGTTTTGAATTCCAGAGTCTCAGCCGTAAGGGAACGAACTACATAGGATTCTCCAGCTTTTGATC
TTAGAAGGCGACCCAAGGGAGGGCTGTGACTTATACGAGTGACCA
Right flanking sequence: Indices 43296 -- 43795
TCCTGACAAGGTCAGTCTCAAAGACCCAGACTCTTTCGAATCTGTTTACAACCCACTACTCTTAG
AGGTCTGTCGTAAACCCTTATACGAGCAACTCCGTGCCTTGGACTATCGGTCACGCCTCTTGCTA
AAGTAAAGGCCATCTCTATCTACTGATCGGGGCTCTCTCTTTACTACCAAAATGCCCTTTCTAGT
TTTTGATCTTGGCTCATCAGAAGGCTTAGCTATTCTCTCTCTTATTTATGTAAATTCATTAGAAA
GACCCGTACCCTATCCCTCGAGCTGCCGGCTTGGTGTGAAGTGATCATAGCCTGGGCTTAGTGGA
GTCCTTACGATTTTATGAAAGATCGAATGCGACTGGGATCACGGAAGGCTAGCGTTATGCTTTAC
TCTACCTATCGAATCTTCAAAGCGTAAGAACTGAGCTACTTCGTTCCTTTTCATCTTTAATAACG
TGTTCAGTTAGAAGAGCAAATCCCCCTCTCCAACCCCCCAAGGGG
Found at i:87113 original size:6 final size:6
Alignment explanation
Indices: 87102--87130 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
87092 TGAAGAGGCG
87102 ACATCT ACATCT ACATCT ACATCT ACATC
1 ACATCT ACATCT ACATCT ACATCT ACATC
87131 CACACCCCAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.34, C:0.34, G:0.00, T:0.31
Consensus pattern (6 bp):
ACATCT
Left flanking sequence: Indices 86602 -- 87101
TGAAGTGGGCTCATACCTGACTCGCGCAAAGACGGACCTTCTCCTTCTGTTAGACCTCATCCATT
GTCGCTTTCATTGAACTAGTACTCGTTGCTTACTTTGATGAGTCTGAAACACCTCCCTATCTTCC
AATAACGTATGTATATAGGAACTGCTTCATTGCTCCTTTCTTCACTCTGATATGGAATCATCTTT
CCGGAAAGTGATTTGATAATATGAATAGACGGGCAGAAAAACTCTAATCGAGGTAAATTTCCGAG
AAGTCCAGTTCTGGTTTGATACCAGTCTCAGGGTCCAACTCCTCTAATACAAGGAATGTGTCCGC
ATCGTACCGAGCTTTGCTCGGGAGGCCCTGGATTCACAACAACTATGTTGTCCCCTCCACTTTTC
ATCAGTGCTTCAAATACAAAGCAGATGGTGATCAGAAGATGGTGACTTAATTCTCAGTTAAAGAA
TCACACTATGCTGACGAAAAATCTTTCGTCGATAGTGAAGAGGCG
Right flanking sequence: Indices 87131 -- 87630
CACACCCCAGTCCTCTAAAAAGGGAAAAAAGAAAGAATAGAAGCCTAAGAGTAGTCCTAAGCGGT
CTTCAAAACCGGTTAAAGGACCCGTATTGGGGAAGCGACTCTGGGTCAGACGATGATGAGGTACT
ACCGAAGCCAAGTCCTCCTTCTCAGAGTCAACCAAAGCTGCCAGAAAGGGTTACTGCACCTCTGA
CTAAGGTCCAGGTGTCAAATGTCGAAAACCTAAAGACATTTGTCGTTAAGCCAAGAAATAAGGGG
CAAAAGGGGATTCTTTATTACAAAAGCTCCCCGCAACCCCTTTCACATGATGACATTAACATTGA
AGAGGAACATGTCACTTCCAGCCAGACAAGCTACAATGGGTTTTTGCGACCCTAGGATAAAGCAA
ATCATGGAACGGGAAGGAAGTAAGGCATTGGAATTAGGAAATAGCATTTATCCCAAGATAGCGGT
AGCAAGTCTTCTGTGGAGGCTAGGAGTAGGAGTAGCAATAGGGAA
Found at i:150144 original size:14 final size:14
Alignment explanation
Indices: 150125--150152 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
150115 TCTTATCTTA
150125 TGAGTTAAAGAAAG
1 TGAGTTAAAGAAAG
150139 TGAGTTAAAGAAAG
1 TGAGTTAAAGAAAG
150153 ATGCTAGGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.29, T:0.21
Consensus pattern (14 bp):
TGAGTTAAAGAAAG
Left flanking sequence: Indices 149625 -- 150124
AAATGCGATCTTTTCCGACAAGTCTTTTTTCATTTAGAAGGAGGCCCCTTTTGCTTTAGCACAGG
GCTAGAAAGAAGGCTGTGATCTCGACTCAGATGGCTTTTCACTCACGCGATATTCCTCATATGTC
AAGGGCTGGTAAGGTTTGATGATGGGAAGAGACCTCTCGAGAAATGCAGCTGCGATTGCCACTGT
CTGTGTCGATAGCAGAAAGTACGACTGGAACCTAGACTGCTAACGTTTATAAGACTCCTTCCTAT
GTCGGAGACAGAACCCCTTGTCTTCAGTCGCTATCCCTGGGTGGTACGCAGAAGTCACGGGTCCG
TCCCGCCTCTCGTACACATACAGAAAAGAAAGAGACGGTTTGGAACCGGCCCAGGCCCCAACCCC
AAAGAGAAACAATTCGAAGAAGGGGCCTCGAAAGAAGCGCACTCTCTGGTTTGTATGTGTATGGA
TAGGGAAGATTTGTAAGTAATTTAGACTCTTCTTATCTTATCTTA
Right flanking sequence: Indices 150153 -- 150652
ATGCTAGGTTAATGACTAGGGCCGGTCGTATAAATCCTTGTTCTTTTGTTCTGGGAAAGCGAAAG
CCAGCACCTAAGAAGAGAGAACCTTCCTGTCCTTTAGTTCGGAGATAGAGGGAGCACGTTAGGGC
GGATCAGAAAGAAGGAACTGAAACCTAAGTTCAATGCAGAATTCTTTTTGCGAGTGAAGTGAAAG
TTCAGTTGACTATAGCTTATTGGCAAGCGGGAGGTACAAGTGTCGCAGATCAAATTGTCGGCAAG
CAAGCTCAGAAGAAACCGACTTTCCTTTCCGGCTAGTGGTAGCGGTTGAGAGCGAAGCGAACCTT
TTCTTAATGTAATGTTCATTACCTTCTCCCCCTTTATTTCCATTCATATTCATTCCTTTCAGGAT
CAGTCGTGGTCTTACAAACTATACCGATGGTATGAACAAATCCCTTTCTTCATACAAATGCGTAA
AAGAAAGATGTTAGCCGCACGCCGTCTACCGTTGAGTTAGCAACC
Found at i:167225 original size:24 final size:24
Alignment explanation
Indices: 167192--167239 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
167182 CCCTCCCCTT
*
167192 AAGATTCCTCACCGCCTGGGTATG
1 AAGATACCTCACCGCCTGGGTATG
* *
167216 AAGATACCTCACTGCCTGGTTATG
1 AAGATACCTCACCGCCTGGGTATG
167240 TTTGCAAGTT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (24 bp):
AAGATACCTCACCGCCTGGGTATG
Left flanking sequence: Indices 166692 -- 167191
AGACAAGAACTACATTGCTATACCTGAATCAGTTTGACTCAATGCTTGCACTTAGACCTTTCCCC
CAAGCTTCCTTCTATGCTGCCAGAAGCGGAGAGGAGGGTTTTCACAACACTTAAACCGAAAGAAG
AAATGCCCTAGCTCAGCTTCCTAGCATGACACATCAGCTACGCCATCAGAGACTGAATTAGAGCC
TGGAATGATCCTCCACTTGCTAGTCATGAAATATCACCGCTCCGTCTTTCGTTGCTCTCTTAAGC
TGCTTTACGAGTGCAACCAAGTTCAAGAAACTGCTAATTAAGATACGATGCTGGTATCTATCTAA
AAGTCAATATCTGTGAGAAGCTTCTTTCTCATAAACATCCGAAGCAACGAGAGATGCCCAAAATC
CTATTTCCTCTTTCCTCCATAACCTTACCAATACTCCCTCGCCTGGAATTCTCCCAGTAAGCTGA
TCAGACACAGCCCTGGACTTCCCTTCACTACCAACCCCTCCCCTT
Right flanking sequence: Indices 167240 -- 167739
TTTGCAAGTTGCAGAAAGCATTGTATGGTCTTAAACAGGCATCACGCGCTTGGTATGATAAGTTT
TATAGCTTTTTAATCAGTAAAGGCTTTCTTATGAGCCGTAGTGATTCCTCGTTATTTATTCAAAC
TAACAGTTTGCGAACTACAATTCTTGCGGTTTATGTGGATGATATTATTATAACTGGCAGTGATA
CCTCTTATATCTCCACTCTAATCACTGAATTAAGTGCTCCGCTATAAAGAACCTCGGGAACTTGA
ACTATTTTCTTGGCATTGAGGTACTCAAGACAAGAATGATCGTGGACTTTTTTTAACACAGCAAA
AATATGCGTTGGATCTCCTCCAGAGAGCTGCTATGCTGAATTGTAAGCCCTGCTCTTCTCCAATT
AACTTTAAAATCAGTCCTCTGCTGCAGTCTCTTCTACTCCATTTCATAATCCATCTCTGTACAGA
AGCATCGTTGGAGCCCTGCAGTATATTACAAGACCTGATTTGGCC
Found at i:181668 original size:19 final size:19
Alignment explanation
Indices: 181617--181669 Score: 51
Period size: 19 Copynumber: 2.9 Consensus size: 19
181607 CATGGATGCG
181617 AACTTTAACAAAGAAC-TT
1 AACTTTAACAAAGAACTTT
* *
181635 -A-GTTAATTAAA-AACTTT
1 AACTTTAA-CAAAGAACTTT
181652 AACTTTAACAAAGAACTT
1 AACTTTAACAAAGAACTT
181670 AGTTAATTAA
Statistics
Matches: 26, Mismatches: 4, Indels: 9
0.67 0.10 0.23
Matches are distributed among these distances:
16 7 0.27
17 6 0.23
18 4 0.15
19 9 0.35
ACGTcount: A:0.49, C:0.13, G:0.06, T:0.32
Consensus pattern (19 bp):
AACTTTAACAAAGAACTTT
Left flanking sequence: Indices 181117 -- 181616
ATCCTTCTCGTTCGATCCGTGCTTTTAACGAATTACCACTTATTCTGTGGCCTCTAGCCTTCTAC
CCCTCTCCTGACGTCGAGCCGCTTCGCCCCTTAGTCCAGAGCAGGAGCAGCGGATTCGCCTACTT
CAAAGTCTAAAGTCAATAATCCGGATTTCCCCTCTTTCCTTCAAGCAAGGCTGACTTCATTAGCT
ATAGGTAGACTTCACACAAATCCAATCGTACAAGCAAGTAGATCAACATCAACGTTGAATAGTTT
CATTCCATCTAGGGTTCCCTGCAAACTTCTTATATCTACCGGGGCAACAACCTCTTCCTTGAAGA
CCCTGTATTGCTTGTCTTTCTTCTCCTAGTTACTTCTTGGATTCGCCGCAAACAGATGACTAAAA
GCGCTTACTAAGCATAGTCCCGGAAATTCCAATGCAATTAGCAGCGAATCTTGCACTTGAGGAGC
AGATCTCTATCTGTAAGAGCAGATTAGGCGCATGCCATGGATGCG
Right flanking sequence: Indices 181670 -- 182169
AGTTAATTAAAAGGCTCTGCGCAGCAATTTTCCTCGTAGGCAGAGGTTGGACAGAGACTCAAACA
TATAAGGCAAAGGTGTGCAGGAAAGGCACCCGGACTTATTTCCAATCGCATATAGAGTGAGCGAA
GCACGGGTAGATCCCATTACAGATTGAGTAGGGGGAACCCCAACTAAAGTAGCAAAGAGAAAGTC
AGCAGCAATTGCTAATCTCTTGATCTATGCACTTTCAATAGCACGCAGAGGTGAGGATCGACTAA
GCATTTCCCTCGACATAAAGTAGGAGAACTCGCCCAAAGGGAACATTTAGAGTTGTTCCAGAAAG
GTCCGCAGGTGAAAGAAAAGAGACTGGCTCTCTCTATCTATTATACTTATACGCAATATCTTGAA
AGGCGAAGAGTGACTACTTCTTTCTGCTTGTATTGTACTTCCTGTTCCTGTAGTGATACAGGACT
CGTGCAAGAGCGCTTACGGCAGGAGATGAGGCTTAGAATCCAGAT
Found at i:182742 original size:27 final size:27
Alignment explanation
Indices: 182704--182783 Score: 125
Period size: 27 Copynumber: 3.1 Consensus size: 27
182694 ACTAATGTCG
182704 TTCTCTGGCTATGCTATGCTGGAGGGA
1 TTCTCTGGCTATGCTATGCTGGAGGGA
182731 TTCTCT-G----GCTATGCTGGAGGGA
1 TTCTCTGGCTATGCTATGCTGGAGGGA
182753 TTCTCTGGCTATGCTATGCTGGAGGGA
1 TTCTCTGGCTATGCTATGCTGGAGGGA
182780 TTCT
1 TTCT
182784 GAAGTCTTTG
Statistics
Matches: 48, Mismatches: 0, Indels: 10
0.83 0.00 0.17
Matches are distributed among these distances:
22 21 0.44
23 1 0.02
26 1 0.02
27 25 0.52
ACGTcount: A:0.14, C:0.19, G:0.33, T:0.35
Consensus pattern (27 bp):
TTCTCTGGCTATGCTATGCTGGAGGGA
Left flanking sequence: Indices 182204 -- 182703
CGAATGCTTACTTCGAAAGTGCTCTTAATCACTTCTTTACTTGGCCTTCTCTCTCTCTCCAATCC
AATAGCAAGAGAAGGTAGAGGAAGAAAAAACCTTATGAAAAAGCTTAATGCTTACTTAAATACTC
TTTTCCGAATCATGCCTTACCCTACTTCCTTCATGCCTGATCTGAATGCCATTGATTACCTCCTT
CATGCCCGTGGTCTGCTTTGCTCGTGGCTAGGGGAGCTTTCTTCTCTTCAGACCAAGAATATCGT
ATGTGATGTTAGAGAGCATGCTCAGGCTAGTTGGCTGAGGATTCTCCGATAACGAATTCTGCTTC
TTTACCTGGAGCGGAAAAATGGTTAAGGAATATCTCAGAGCCGATGCGCGATCTCCGTGCTTTCC
CACTCCGGGGGAGCGGGGAAGAATCCGCATGGGGGGTGGACCGGTACAACTCAGAAAGAATAAAA
AGTACTCATACACATATGATCACCTTAAGAGTAAAACTAATGTCG
Right flanking sequence: Indices 182784 -- 183283
GAAGTCTTTGGGTAATGGCACTAAGCTTAATACACTTAGGAAAAATCCCACGATAGAGAATGACC
TTCACAGGAACAAAGCTCTATTAAATGCCGGTCTCCTGCTGTATGTTTTTCTTTTTATTATCTTA
CATAAAATTAAGGACATAGTGTCCGAAAACCTCTCATAGCAGGTGTTAAGTCTAAATCAGACGGA
GACTGATGGTCCAGGGTAGCGACACCTGAAATCTTATTAATAAGCTCAGATCTTTATGGGGAAGA
ACGCCAAGACAAGGGGAAGAACTGAAATATTATTAATAAACTCAGGGAAAAGCCAGGGTTTTACT
CGGATCTTAAAGAAAAAAATATGTGCAACAAACAATGGATTACTATGTCATTGACAGATATAGAG
AGAAAAGAAGAAGAAAAAGAGGAAGCCCTATCGCCCGAGAAAAGGGGGTTTAACAAATGTTGGGC
CACTGACTTCGAAGCAAGAAGGATTTTGAGTCCCTTGCTCCAGAA
Found at i:182744 original size:22 final size:22
Alignment explanation
Indices: 182716--182767 Score: 104
Period size: 22 Copynumber: 2.4 Consensus size: 22
182706 CTCTGGCTAT
182716 GCTATGCTGGAGGGATTCTCTG
1 GCTATGCTGGAGGGATTCTCTG
182738 GCTATGCTGGAGGGATTCTCTG
1 GCTATGCTGGAGGGATTCTCTG
182760 GCTATGCT
1 GCTATGCT
182768 ATGCTGGAGG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.13, C:0.19, G:0.35, T:0.33
Consensus pattern (22 bp):
GCTATGCTGGAGGGATTCTCTG
Left flanking sequence: Indices 182216 -- 182715
TCGAAAGTGCTCTTAATCACTTCTTTACTTGGCCTTCTCTCTCTCTCCAATCCAATAGCAAGAGA
AGGTAGAGGAAGAAAAAACCTTATGAAAAAGCTTAATGCTTACTTAAATACTCTTTTCCGAATCA
TGCCTTACCCTACTTCCTTCATGCCTGATCTGAATGCCATTGATTACCTCCTTCATGCCCGTGGT
CTGCTTTGCTCGTGGCTAGGGGAGCTTTCTTCTCTTCAGACCAAGAATATCGTATGTGATGTTAG
AGAGCATGCTCAGGCTAGTTGGCTGAGGATTCTCCGATAACGAATTCTGCTTCTTTACCTGGAGC
GGAAAAATGGTTAAGGAATATCTCAGAGCCGATGCGCGATCTCCGTGCTTTCCCACTCCGGGGGA
GCGGGGAAGAATCCGCATGGGGGGTGGACCGGTACAACTCAGAAAGAATAAAAAGTACTCATACA
CATATGATCACCTTAAGAGTAAAACTAATGTCGTTCTCTGGCTAT
Right flanking sequence: Indices 182768 -- 183267
ATGCTGGAGGGATTCTGAAGTCTTTGGGTAATGGCACTAAGCTTAATACACTTAGGAAAAATCCC
ACGATAGAGAATGACCTTCACAGGAACAAAGCTCTATTAAATGCCGGTCTCCTGCTGTATGTTTT
TCTTTTTATTATCTTACATAAAATTAAGGACATAGTGTCCGAAAACCTCTCATAGCAGGTGTTAA
GTCTAAATCAGACGGAGACTGATGGTCCAGGGTAGCGACACCTGAAATCTTATTAATAAGCTCAG
ATCTTTATGGGGAAGAACGCCAAGACAAGGGGAAGAACTGAAATATTATTAATAAACTCAGGGAA
AAGCCAGGGTTTTACTCGGATCTTAAAGAAAAAAATATGTGCAACAAACAATGGATTACTATGTC
ATTGACAGATATAGAGAGAAAAGAAGAAGAAAAAGAGGAAGCCCTATCGCCCGAGAAAAGGGGGT
TTAACAAATGTTGGGCCACTGACTTCGAAGCAAGAAGGATTTTGA
Found at i:268212 original size:13 final size:13
Alignment explanation
Indices: 268194--268219 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
268184 TCCTGCGAGC
268194 TTAGTTTATGAAT
1 TTAGTTTATGAAT
268207 TTAGTTTATGAAT
1 TTAGTTTATGAAT
268220 AATGCAGCAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.00, G:0.15, T:0.54
Consensus pattern (13 bp):
TTAGTTTATGAAT
Left flanking sequence: Indices 267694 -- 268193
GGAGACGAGACGTACGATTGAAATCACGTTTATGAAAGCAATGGCTCTTAGCCGACTAAGATGAC
CACATAGTGGTATACTACTTCACGTAATTCACGTAATTTTCCACTTTACCACTATCAGACTAGAC
CGGAGCTTTTGAATAGGGCTTTGAGGATAAAAAGACTAGCCGGAAAGCCATTCCCCTGCTTGCGA
CCGCTGGACCACTTGGAATGATGGAAAAGAGAGTACAGAGAGCATTCCATATGGGGCTTCCCATC
GGGGCTACCATTTTCTCAGGCCCGATCGAGGTTCTCTTCTTTCCCGCTCATATGAAAAAGACCTG
CAATGCTAATCTCGTTAGGCCACCCGAACCCATCGAACCTTTGACAGGAGGAGTTAGATAGGTGA
AAAGATAACAAGACAACACCTGCCTATATCGCTCCTGTCTAAGCGAGCGAGACTTTTTCCATTGA
TATTTCCATATCATGTAGCGAGACTCCACTTTAGATCCTGCGAGC
Right flanking sequence: Indices 268220 -- 268719
AATGCAGCAATCGTAGGGTCGACAGTACCGGTGGGCTTTGAGCTACCAGAGCAAGGAGATAGAGC
TTGAGCTTTTCCTTCATGGACCAAGGCGACTCTCGTTAGCTCTACTTGGGCTTAGTGCGATTCGA
AACTGGGATTTTTTCTAGCCCGAAGAACGAACAAAGACAACAAGGAGCGACTGATAAGGAGCGGT
TCAAGCTTTCTGGCCATTCCAACTGCCTCCATTATTCTACTTTTTAAGCGCCATAAGCAGCCAAG
CATAGTGGTTCGCTCAAGCAATGGAGTTTGCGAAACTTCCGTTCCGGTAGTCCTTAACGCAAGGA
AATAGTAAGATCAGACCCTCGAATTCGATTACACACAAGCTGCCAAGTAAGCTCTCGAAAGAGCT
ACCTCAGAATGAAAGCTACATCAATCCAAAGGAATTCAATCCGTTATATCTCCACCTCGTAAAGC
CGTAACAGCATCGACTCATTAATGCGCCCTCAAGGGGCAGCCTAT
Found at i:315180 original size:19 final size:18
Alignment explanation
Indices: 315158--315211 Score: 51
Period size: 19 Copynumber: 3.0 Consensus size: 18
315148 AAAAAAAAAT
315158 GGATTATATTCTAATTATA
1 GGATTATATT-TAATTATA
*
315177 GGATTCTA-TT-ATTATA
1 GGATTATATTTAATTATA
315193 -GATTATATTATATATTATA
1 GGATTATATT-TA-ATTATA
315212 TATATAATAT
Statistics
Matches: 29, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
15 6 0.21
16 7 0.24
17 2 0.07
18 1 0.03
19 13 0.45
ACGTcount: A:0.37, C:0.04, G:0.09, T:0.50
Consensus pattern (18 bp):
GGATTATATTTAATTATA
Left flanking sequence: Indices 314658 -- 315157
AAGTAATCAAGCAGCAAGTTCAGTCTTTTCAGGGCGAGCTGACCGCAGAAACCGTAGACTTCCAT
GATGAACCCACCTTAGCCACCTCCGATCAGACAGAAAGATGCGATCGTTAGAGATTCGACGATTC
CCGGTTGGACCTATTCAAGCGATTGAACGAGATACTCGACAACTAGAAAGACGCACTTGAATACT
GAATGCTATGAGGAGAAAGAATGACTATCACCAACCATAAAGACGATAAAAGAAGGCACTCCCGT
TCCCCCGAAATCATCTTCTGTGCGTGGTTATCCAATCATGATGTGGTAGGCTTAGTAGGGCTCGA
ACCTACAATCTAACCGTTATGAGCGGTACGTTTCAACCAATTAAACTATAAGCCCCTACAGATCT
CTACATGCAATTCGCTCACTTCGGGAAGAGCGGACGGAAGGCGACGGGGAGGCCTTTGCTCTATC
TGCTTCTTCCTCTTCTCAGGAATGAAGAATTAGATAAAAAAAAAT
Right flanking sequence: Indices 315212 -- 315711
TATATAATATTCTATATCTATTATTAGAATTAATAATCTAATTAAGCAAGCGGCCCTTTTGCGAC
TCAAACTGCCGGTACGCTTTCCGGCTCGCAACGACTCAAACGGGCGGAGGCTCTCTATTTGCTTG
CACTGCCGGCTGTTCGCCTTTAGTTAGAAGTAGAAGTCGCTCTTTGCCCCACACTTCTAAAAAAG
TATGGATTAATTCAGTAAGAAAAAAAAAACTTGGTTACGGGAACCGAAGGTTAGGCCGACTACTT
ACTTTCTCCTTACCCTTAACAGGATTGTCTCCTACCGATCGAGGAAAGGCTTAGAATCCATGCTT
TGACCGGTAATGTCCAATCTAAGAACGTCTTGTGCCTTTTCCTGGGCCCCCTTCATTCTGACTTA
GCTAATTCAATTCTTTCTATTTCTAATGGGCTTATACTTTTTTCTATATCCCCCGAGAAAAGAAA
GTCCTGCTATATCTAATGTATTTTTTCCAGGACCGCTTGCTTCTG
Found at i:315201 original size:15 final size:16
Alignment explanation
Indices: 315171--315203 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
315161 TTATATTCTA
*
315171 ATTATAGGATTCTATT
1 ATTATAGGATTATATT
315187 ATTATA-GATTATATT
1 ATTATAGGATTATATT
315202 AT
1 AT
315204 ATATTATATA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 10 0.62
16 6 0.38
ACGTcount: A:0.36, C:0.03, G:0.09, T:0.52
Consensus pattern (16 bp):
ATTATAGGATTATATT
Left flanking sequence: Indices 314671 -- 315170
GCAAGTTCAGTCTTTTCAGGGCGAGCTGACCGCAGAAACCGTAGACTTCCATGATGAACCCACCT
TAGCCACCTCCGATCAGACAGAAAGATGCGATCGTTAGAGATTCGACGATTCCCGGTTGGACCTA
TTCAAGCGATTGAACGAGATACTCGACAACTAGAAAGACGCACTTGAATACTGAATGCTATGAGG
AGAAAGAATGACTATCACCAACCATAAAGACGATAAAAGAAGGCACTCCCGTTCCCCCGAAATCA
TCTTCTGTGCGTGGTTATCCAATCATGATGTGGTAGGCTTAGTAGGGCTCGAACCTACAATCTAA
CCGTTATGAGCGGTACGTTTCAACCAATTAAACTATAAGCCCCTACAGATCTCTACATGCAATTC
GCTCACTTCGGGAAGAGCGGACGGAAGGCGACGGGGAGGCCTTTGCTCTATCTGCTTCTTCCTCT
TCTCAGGAATGAAGAATTAGATAAAAAAAAATGGATTATATTCTA
Right flanking sequence: Indices 315204 -- 315703
ATATTATATATATAATATTCTATATCTATTATTAGAATTAATAATCTAATTAAGCAAGCGGCCCT
TTTGCGACTCAAACTGCCGGTACGCTTTCCGGCTCGCAACGACTCAAACGGGCGGAGGCTCTCTA
TTTGCTTGCACTGCCGGCTGTTCGCCTTTAGTTAGAAGTAGAAGTCGCTCTTTGCCCCACACTTC
TAAAAAAGTATGGATTAATTCAGTAAGAAAAAAAAAACTTGGTTACGGGAACCGAAGGTTAGGCC
GACTACTTACTTTCTCCTTACCCTTAACAGGATTGTCTCCTACCGATCGAGGAAAGGCTTAGAAT
CCATGCTTTGACCGGTAATGTCCAATCTAAGAACGTCTTGTGCCTTTTCCTGGGCCCCCTTCATT
CTGACTTAGCTAATTCAATTCTTTCTATTTCTAATGGGCTTATACTTTTTTCTATATCCCCCGAG
AAAAGAAAGTCCTGCTATATCTAATGTATTTTTTCCAGGACCGCT
Found at i:333891 original size:36 final size:36
Alignment explanation
Indices: 333844--333915 Score: 144
Period size: 36 Copynumber: 2.0 Consensus size: 36
333834 TAAGTCCATT
333844 TCTTGGATTCTCCCTTACGTGACAAATCATTAAAAA
1 TCTTGGATTCTCCCTTACGTGACAAATCATTAAAAA
333880 TCTTGGATTCTCCCTTACGTGACAAATCATTAAAAA
1 TCTTGGATTCTCCCTTACGTGACAAATCATTAAAAA
333916 AGCACCATTC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.33, C:0.22, G:0.11, T:0.33
Consensus pattern (36 bp):
TCTTGGATTCTCCCTTACGTGACAAATCATTAAAAA
Left flanking sequence: Indices 333344 -- 333843
TGAAAATTGGAATTTCTTCGTCACGGCATAAGGTTTTGAAGCCTGGGGCCTCTAGGCAGGATATG
GGGGAGGAGCAAGCTATTTAACTACTGGTCGGGTATAGCTTTCTGATAGTGTAGAGAAGAGAAAA
GGAGAATGCTTCCCCAAAGCCAGCCACCCAATGTGAGCCCCGCTGCCGGATTAGCTTTCCTCTTA
GTGAGGCGATCGCCCTTCTTCCTCAAGCCCACTACTTTAGTAATTCGGGAAGGATCCAAGGCCTT
CTCAAGTCAGTCATTCGGGAACCTCTTTCGTCGCTATACTGGCGTCAATCTTTCCATAAAATGAT
AGCCGCTAAGGCCACTCGGACTACCTTTCTAGGGGACAACAGGAGAGCTTCAAGCCCTCTCCTTA
GCCGGCGCAGCGTTGTGTATAACCTTAGGCGGCAGTTGAGTCACTCTCGTCCCTGGGTGGGGTTT
AGTTCTTCCCCCCTATTTGGAAAAGAAAAAATGGCTAAGTCCATT
Right flanking sequence: Indices 333916 -- 334415
AGCACCATTCTGACTTCCGACAACTATAAAAACAATCGAACAGATGCGGGAATATAATAAGCCAA
TAGCACTAGGCCCCTATTAGTCAAGCAAGACCCCAAAAAAACTCTTCCCTTCTTAGATAAGCACG
AATCCCTAGGGATAAGCGAAGAAGACTTTACCCCTTGTATCACATCAAGGGTTATGCCGGGTCAA
CCCAAGAATCACTAGGGACTATCTTAAACTAAGGGGATGCAATCGAGAGAGTGACACAATGATTT
TCCTTTTAGTTCAGTGCAAGACCACATTCCACCCACTTTAAGGACGCATGTGGATACACGATCAC
GGTGCCGTCCCGTCCTCCTATCATAGATGTGTCAAATTCCCATTCCAAGGAGGAAGAACCATAGT
GAGAACAGAGAAAAACATACCCAACCCCCGAGTACCAATTTCATGGACATGTTCCCATTAGAGAA
GCAAACAGTAAACCCATGCGAATCGAAGAGGTCTCAAACGACCTA
Found at i:333926 original size:36 final size:36
Alignment explanation
Indices: 333850--333926 Score: 102
Period size: 36 Copynumber: 2.1 Consensus size: 36
333840 CATTTCTTGG
* ***
333850 ATTCTCCCTTACGTGACAAATCATTAAAAATCTTGG
1 ATTCTCCCTTACGTGACAAATCATTAAAAAGCTACC
333886 ATTCTCCCTTACGTGACAAATCATTAAAAAAGC-ACC
1 ATTCTCCCTTACGTGACAAATCATT-AAAAAGCTACC
333922 ATTCT
1 ATTCT
333927 GACTTCCGAC
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
36 30 0.83
37 6 0.17
ACGTcount: A:0.35, C:0.25, G:0.09, T:0.31
Consensus pattern (36 bp):
ATTCTCCCTTACGTGACAAATCATTAAAAAGCTACC
Left flanking sequence: Indices 333350 -- 333849
TTGGAATTTCTTCGTCACGGCATAAGGTTTTGAAGCCTGGGGCCTCTAGGCAGGATATGGGGGAG
GAGCAAGCTATTTAACTACTGGTCGGGTATAGCTTTCTGATAGTGTAGAGAAGAGAAAAGGAGAA
TGCTTCCCCAAAGCCAGCCACCCAATGTGAGCCCCGCTGCCGGATTAGCTTTCCTCTTAGTGAGG
CGATCGCCCTTCTTCCTCAAGCCCACTACTTTAGTAATTCGGGAAGGATCCAAGGCCTTCTCAAG
TCAGTCATTCGGGAACCTCTTTCGTCGCTATACTGGCGTCAATCTTTCCATAAAATGATAGCCGC
TAAGGCCACTCGGACTACCTTTCTAGGGGACAACAGGAGAGCTTCAAGCCCTCTCCTTAGCCGGC
GCAGCGTTGTGTATAACCTTAGGCGGCAGTTGAGTCACTCTCGTCCCTGGGTGGGGTTTAGTTCT
TCCCCCCTATTTGGAAAAGAAAAAATGGCTAAGTCCATTTCTTGG
Right flanking sequence: Indices 333927 -- 334426
GACTTCCGACAACTATAAAAACAATCGAACAGATGCGGGAATATAATAAGCCAATAGCACTAGGC
CCCTATTAGTCAAGCAAGACCCCAAAAAAACTCTTCCCTTCTTAGATAAGCACGAATCCCTAGGG
ATAAGCGAAGAAGACTTTACCCCTTGTATCACATCAAGGGTTATGCCGGGTCAACCCAAGAATCA
CTAGGGACTATCTTAAACTAAGGGGATGCAATCGAGAGAGTGACACAATGATTTTCCTTTTAGTT
CAGTGCAAGACCACATTCCACCCACTTTAAGGACGCATGTGGATACACGATCACGGTGCCGTCCC
GTCCTCCTATCATAGATGTGTCAAATTCCCATTCCAAGGAGGAAGAACCATAGTGAGAACAGAGA
AAAACATACCCAACCCCCGAGTACCAATTTCATGGACATGTTCCCATTAGAGAAGCAAACAGTAA
ACCCATGCGAATCGAAGAGGTCTCAAACGACCTAGGGAACCACTC
Found at i:334863 original size:21 final size:21
Alignment explanation
Indices: 334839--334880 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
334829 TGGCATATCT
334839 ATCCTTATTCTATTTTTGTGC
1 ATCCTTATTCTATTTTTGTGC
334860 ATCCTTATTCTATTTTTGTGC
1 ATCCTTATTCTATTTTTGTGC
334881 CTAGACAGAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.14, C:0.19, G:0.10, T:0.57
Consensus pattern (21 bp):
ATCCTTATTCTATTTTTGTGC
Left flanking sequence: Indices 334339 -- 334838
ACCAATTTCATGGACATGTTCCCATTAGAGAAGCAAACAGTAAACCCATGCGAATCGAAGAGGTC
TCAAACGACCTAGGGAACCACTCCCGAGTGAACAGTCTCGAGGATGGCAAAAAATGTGACGATCC
GGGTACACACCTGGAGCAGGCCTAGGAAAGAGAGAAAACAGAATCATCAAACCTATAGATATATA
ACCGTCACAAAGATCTAGAAACCAGGGAAACGGATATGACGGCTTCTCCTCACAAGAAGACATGG
AATGGACACTAGCTAAACGATTCAAATCTTCAGGATCAGTTGAAAGCATAGACGACAGATCCTTC
TCCTGGACTCAAAAATATCTTTGATCATAAGGAAGGGAAAAGGGGACTTAGGTTTTCAGCGTGCC
CAATCCCATCCCCATAGTCCTTCTACCGACTGGGACCACCCGAAGAGACAAGTGTTTTGCCCTTC
TCCCGTAGAGTATGGCTCCCCGTATCGTGTCTTTCTGGCATATCT
Right flanking sequence: Indices 334881 -- 335380
CTAGACAGATGATAATAGATGTCCGTTTCCGGGATTTCTGCCATGATATTTAATAGAATAGCGGA
CTTTCTTTTTGATCGCCAGTTGGTTCATAGAAAGAGAGTATGTAATGAAATAATAAAGGTCAAAA
GCTCCCCCCGGAACCGGTTTCCTTTGTTTGCTACCCTTGAAAAACCATGTGCTTCTCGATATTCT
ATCCAGCAAGGGGCGCCGCCCTCCCCCTCGCAATTCTCCACCCTCTGACCTTCCCTTTTTCCTTC
TTTGCGCTAAAACAGGCCTATAGGTTAGGTTCGCCTTTCTAATAGTAATAGAAGTTGAGTCTATA
TAGAAGTATATAGAATTAGACAGATCGTCTTCAGCATGAACAGAATCACCTTTGTTCCGAAGCAG
TGGGAATAGCTTTTTTAAAGCTTTCGTGTGGTGTGTCCCGGGAGAGCAGCAAGCCAAACATCGTA
CTCTTCGGAGGGACCGTGTCATGTCAGTCACGATTAGAATAAAGG
Found at i:339893 original size:14 final size:14
Alignment explanation
Indices: 339874--339902 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
339864 ATCCTCCTCC
339874 TTTATATTCTATAT
1 TTTATATTCTATAT
339888 TTTATATTCTATAT
1 TTTATATTCTATAT
339902 T
1 T
339903 ATATTAGTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.28, C:0.07, G:0.00, T:0.66
Consensus pattern (14 bp):
TTTATATTCTATAT
Left flanking sequence: Indices 339374 -- 339873
TTGGGAGCTCATAGGTAGAGGGGAATGGAAGATTAGGCGACAAAAGTCTTATGTCGCTGAATAAC
AGGTCGCGGGTCGTGCTCTTGCTAATTCACTCGGAAATAGGAGACTTGTTGGACTGGAAGCACTA
GTCAGTTAACTACTTACCTCAGCTTTATCTCTATCTATTAGGTAGGTGCGCCAAGAGAGGCTAGA
TCGCAGCGCATTTTGACTCCGGGTAAGGGATTCGCCCTGCTCAATCGTTGCTTGTTGCATCCGTT
TTCTTGCAGGGTGAGCTCGTCTTCATTCTTTTGGATGGCCTCGCGTCGAGGGGGATACAATTGAC
TGTCTCGAACTGATACGATAGGAATTGAAGTCCCGACTTGCTGCACAACTTCTACTTTTCTTGAG
CTTGAGTAGACCGTTCGCTTTAGGGAAAAAGAGCTCCCGGGGATTGAATGGCTTTTATCTCCTAA
CATAGTAATGTGATAGTAATATGAGCTTGATCCAAATCCTCCTCC
Right flanking sequence: Indices 339903 -- 340402
ATATTAGTAAGGCCTTTACTTGAATACTGTGCTTGCTGCTTATGGCTCACGATCCCTTACCTCAG
CCCTTTCCAGTCTCCTTGCTTTCAATGCCCGAGATGCCCCCTATTTGAGTAAGGTGGTCTATCGC
GATAGGGTAGCCTTATTGAAAACGAAAGTCAAGCAAAAGAAAGGGTTAGATCAAGTACAGATGTT
GAAGAAAGCCTGACTTTACTCCTTTCCAAAAAAACTTGATTTTGGGCTTCAAGACCTTTTCTATT
CATAAATGGAGAACCGGAAAACATGAATTTCATTGACGCTCTGGCATTCCTATCTATTCTATCAT
ACTCATTGGTCCCTTCGCCGACTAGCTCGAAGGATTCAATCAATGGCTCCTGGTCTCCCCTGAGG
AAAAAGAAAGCTTTTTTGGGCCTAAGGCATCGGTAGGGGAGCGTTCCGCCCATTACATCAGTTCG
ATTCTACTCTGTGCCGATTTCTTAGTCCAAAGGGAGACTTCACGG
Found at i:351231 original size:13 final size:13
Alignment explanation
Indices: 351213--351238 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
351203 AAGGAGCTAA
351213 TACAGAATACGAG
1 TACAGAATACGAG
351226 TACAGAATACGAG
1 TACAGAATACGAG
351239 AAAACTCCTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.15, G:0.23, T:0.15
Consensus pattern (13 bp):
TACAGAATACGAG
Left flanking sequence: Indices 350713 -- 351212
TCGCCTCGGTTCTTGGCTTTGATCCAATTCGGAAGCTCGTTTGCTCACTAGCCGATGTCATTTTC
AATTGACTTAGTTAGAAAAGTATGGGGATACCGTACCACTTTAAATTAAACAAGCGCCAGCAAAA
TGGAGCTTACCGCGCTGAGTTACGTCGTAGGCGAAGCTTTCGATTCGACAAATGAATGGTTGGTG
CTTCCCTTCTTTAGCCTATTTGCCTATTTGGTAGATTCAATTAGGGCTAGCTCAAAGACTGGCTA
ATCCCAATCCGATGGATCAACTCTTTCGCGTCGCTTAACGACTTGTAACTCTGGCGAGTACCGAT
GCTCCAAATTGGATTACCTAGCGCTTGGGTGAGATGTTCGACAAGAGACTAAGGACCTTTTAGGT
GGGAGTTCCATCCGAGACGGACTGGAATCACCGGCTCATACTAGAGCTTCCGGACGAACTCAAAA
GCGAAAGATCGAAGCCTTACCTTATTCATTCGTGGAAGGAGCTAA
Right flanking sequence: Indices 351239 -- 351738
AAAACTCCTTCGAAAACGAAATCGGAAAGAGAGATGCTTTCAATCCAACAATTGTAATTAGTAGC
CGACCTTTAATTGAAATTGACCAATGTTCGTCTATCGGCTCAAGTCTTTCCAGAAGCCGGAAGGA
AGAGCGCTTTTTTGCTTTTCGTGTGATCACTTTCCATAATGGTTTCCTACCGAAGGTAAAAAGGC
AAACAAAGGATACGGGGACCCAAGCTCTTATACGTGAAGTGCTTTCCGGCAAACTTAGTATCGAG
AAAATCCGTTACCGCTCCCGAAGTCAATTTACCCTCAGAGTCAGAGAAAGTAAATGCGTTTACAC
GTACGCATACATAAACAAAGTAGGGCCCAGGAAAGCCATTCCTGCTACAGTACAGAAAAATGCAT
TCGACCACCTGAACTTGAACGCTCTCTTTCTTTTTAACGTTCTAACTGAACACACCTTGAAGAGG
GAATCATCGAGCGTAAAAGCACGCTTCAGAGCATGTGTGCCGCAT
Found at i:355100 original size:19 final size:19
Alignment explanation
Indices: 355076--355114 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
355066 CAAAGAGCTG
355076 TTTTCTTTCTTGCTT-TGTT
1 TTTTC-TTCTTGCTTCTGTT
*
355095 TTTTCTTGTTGCTTCTGTT
1 TTTTCTTCTTGCTTCTGTT
355114 T
1 T
355115 GGGCTTGCTC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 8 0.44
19 10 0.56
ACGTcount: A:0.00, C:0.15, G:0.13, T:0.72
Consensus pattern (19 bp):
TTTTCTTCTTGCTTCTGTT
Left flanking sequence: Indices 354576 -- 355075
TTCTCCATCCGCCCGCCAGCAGCAGGGGGGTTCGATTCCCGTTATACGCGATGTGGCGAAGAAAA
GCGCTTGTTATTTGCGGAAAGGAAGAAGTCATCCCTCTTGCTGGAGGAAACTACCTTTCTATCCT
TCTCCTGCCCCTCTCAGTTGGAAAAAGGGCTTTCGACTTTCCCTAATCTCCTTTGCTCCCTAATC
CATTCCCGGTGCCATTCAACTATCTGACAATAGAGTATCTAAGTCAAAGCTGTTCCCGGGTTCAG
GTGAAGAATGTTAGAAAGACTCTCATGAAAAAAACCTCTAACTTGGTTCGAGTGGCTGATAGCTG
CTTATCGCTCCTGTCCAGTCATCTTAGTCCATGGCTTCTGTTTCATGCTTGGTTGATGGAAGACA
GCTTTGAGTGCCGTTACTTTCCCCCTCCATGCTTGAAGTTCATTCCTCCGTTGTGCTTTGTCTGT
CATCTTCTTTCTTCCCTTCCTCGGGCACAGTAAGACAAAGAGCTG
Right flanking sequence: Indices 355115 -- 355614
GGGCTTGCTCCTCTGTTATCCCTGACTCCCTAAACTTAATGAATGAAGGAAGGGTCTCCGCTCCT
TACCCTATCGGGCAAGTGGCTTACACTCCTTGCTTGCTTTCATCCTGCTTTTAGTGCCGCTTGCT
TGCTCGAAGGAGGGGCTACCGCTCTTTAACCTCGTCGGTAAAGCGGCTTGAATAGGACTTTCCCT
ATTTTCATTGGCCTTTTCTTCGATGTCAATGTGCTCAGGTCCTTTCTTTGCCCCTTCCCTTGGGT
TGGGCTCTCCCTCAAATGCCCTTTCCCTTCGTTATCTCTACATGAGTGAAACTCAAGCACTCGAA
TATCAGTAGATTAGCGTCACGCCAACGCAACTCTCAAACCATCGGCGAGAGGAGAGTAGGTCCGG
CTATGACTTTCATAGGAACCGTTGGGCCACTATGTCATAGTGAGAGTAGGGACCCATCCCATATG
ACTCAGAGTCAAAGAAAGCTCTTAGCCTCCGACCAGTATCAGGAA
Found at i:366646 original size:17 final size:17
Alignment explanation
Indices: 366624--366658 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
366614 TTCTTTACTT
366624 AGAAATAGAGAATTCTG
1 AGAAATAGAGAATTCTG
366641 AGAAATAGAGAATTCTG
1 AGAAATAGAGAATTCTG
366658 A
1 A
366659 TTCTAAAATC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.49, C:0.06, G:0.23, T:0.23
Consensus pattern (17 bp):
AGAAATAGAGAATTCTG
Left flanking sequence: Indices 366124 -- 366623
ATCATGCCTTTTTGATGACAAGAAATCCTTAAATGAAAGCAAAATCGTGGATCCAAAAATCCGTT
ATCTCCTCGTGCAGCTTCTGGGCTAAAATCCAATCTTTTAAGTGAGAAAGTCGTTATCAATACAA
TTATGCCGCCGAATACAATCACTTTGAAGAAGTCGCAAGTGCGGGTTCAAATGGGAAGTACGAAA
CACTCAATGGAGAATAGGGATCGCTATGCCGAAGAAAAGAGAGAGGTTGCACCAGGAGAAGATAA
GGTCATACCAAGGGCTTTCTATAATTTAAATTAATGATTTTGCTTTGAAAGGAATGTATCCAGCC
TAAACGCAAAGACGGGCCTATCCTATAGGCAGAAGCTACCTATCCGACTAGTAGAAAGCGTGAGG
AGGAAGACTTCTATTCGGCCCCCCTTGGCTACGAAACCAGGCTGTGATCCGCATCGAGAAAGAAA
TGTATTCATGCATCTCTTTAGTTCGAATGCTGGATTTCTTTACTT
Right flanking sequence: Indices 366659 -- 367158
TTCTAAAATCCATTCTCTCACCAACATATATGCTATACCCAAAGCGCTGAAAAGGGCTGATTCTC
GCCATCTAGGAATAAAGAACCGGTATCTTCAATGAAAGCTATCCATCGCTCACCCCCTCTCTCAT
CATAACCTATTTCAGATGTACCCGTCGCTCCTGGGATTCGACTTTCCTTCTGAGGATGGAGAGAA
GTTTGGAGATGGCACCGGGCTCCTGCCTAGCTTCCTGAACCCAATCTGAGCTTACAATGCGAGGT
TTGGGAATACTACCTGACGAGTACCCGTTGACTTTCAATGTCGATTTCTATATGTCTACTCCCGC
GCATACTCCTTGAATATGAGGCAATGCCAATTGTTGAAATGCCATCAGATGAAGGAAACTCTGTA
TCTGTAGATCATGTAATTCCTGCGCCTACTAAAGCCAATAAAGATACCAAATCTTACTAACTACC
GCTAGCTCCATTAAGTCTGCCAGTCTGCATCAGATTATCTCAATG
Found at i:398659 original size:12 final size:12
Alignment explanation
Indices: 398644--398669 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
398634 TTTAATCGAT
398644 GCTTTTGTCAAG
1 GCTTTTGTCAAG
398656 GCTTTTGTCAAG
1 GCTTTTGTCAAG
398668 GC
1 GC
398670 GGCTCCTCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.15, C:0.19, G:0.27, T:0.38
Consensus pattern (12 bp):
GCTTTTGTCAAG
Left flanking sequence: Indices 398144 -- 398643
GAGAGGTCTTTCGGCTTGGACATGACGTTTGCTTGATATTGGGCGGAGTGGGCTTTGTTTGCTGC
TTTGCAGAGACTAGGCTAGGCCACGTGAATTGACCTCACCCATCACATCATCTTGGGAAGCTCCT
CCCTCCTCAACAAGCTCCACCTCCAGAATATCTAGAACCGTTTGGGATTGGACTAGATTGGTTCA
CTCAATATCCTATATAAAGGAGAAAGGGCCAAATCATATATAATGATATAATTGAAATTAAAGTT
ATGGACTCATTTTATAGATATGTTTATGTCTTATCAAGAAGCCCAAAAACTCTTTGATCTCTATA
CTTTAGAAGAGTTGAGGAATTTCCTGGAGCTCTTTCTTTCCATTTCTTTTCTGGTGTAAAACCCT
CCCTATCAATACTTCCTTGCTATTCATTGACAAGAGTTGTAGGGACAAAAATGAGTAATCGAACC
CCTTAGACCCTTTTGCATACTTCGATCTACAAGGCTTTAATCGAT
Right flanking sequence: Indices 398670 -- 399169
GGCTCCTCATATGAAATCCTGAAAAATAGAAATAGCCCATAAAATGACAGCCATCAAAAGGCCTA
AGTCCATATTCTAGCCTCGGTCTGTCCAAATTCAGCGGTCTCTACCCAAGTAGCTCTGGCCCATG
ATCCAAGGGACCTGCAACCAGTTAATCATTCTTTCTTTATTTTCCAACCACTCGGGCAATCATGC
TTGTTTTATCTTCCAACCAATCCCTTTGATTCCGTTTCTGCAGCAGTATATAATCTCGGTCCCTT
ACCTTGATGCCTACAGCTCAATCTTTTTTACAGTGATGGCAATAATATGCGAAATACTGTTTTTT
CTTTTTCTTGGGTTGTTTCTGAATGGCATCATAGCTACACGAGGGAAAGCGATGCTGCCCACTCT
GCCGGGGGCCGCTTTCTTCCCCTCAAAAATGCCAGTTCCACCATCAGGGCCCAGCAAGCAGCATA
ATTCTGTTCCGAGGCTGCGTTTCATTCCAGCACCAGTAGTATATG
Found at i:405462 original size:15 final size:15
Alignment explanation
Indices: 405442--405490 Score: 57
Period size: 15 Copynumber: 3.4 Consensus size: 15
405432 GTAGAGGGTA
405442 TTTCTTCATTCTTCT
1 TTTCTTCATTCTTCT
* * *
405457 TTTCTTTA-TATT-A
1 TTTCTTCATTCTTCT
405470 TTTCTTCATTCTTCT
1 TTTCTTCATTCTTCT
405485 TTTCTT
1 TTTCTT
405491 TATATTAATA
Statistics
Matches: 26, Mismatches: 6, Indels: 4
0.72 0.17 0.11
Matches are distributed among these distances:
13 7 0.27
14 6 0.23
15 13 0.50
ACGTcount: A:0.10, C:0.20, G:0.00, T:0.69
Consensus pattern (15 bp):
TTTCTTCATTCTTCT
Left flanking sequence: Indices 404942 -- 405441
TTGGGAACAGCTTGAGGCCATTTGAGCGAAAGATTGAGCATTGGATCAAGAGAGTGCATTAGCCG
GCTAAGTCGAAGCGTATCAATCCCAAGGTCGGCCTACAGATATCACTTTTAGGTCTTCTTCTTTC
CAGCGGAGGGAGCAAGGCCATTCTGAGGCTCAACCCCTTAAAGCTTAAAGAAAGTACTGCTACAC
GCAATAAGCCAATCTATCTACATGATTCTCACATCTTGATCTTTCCACATTCGTATCATTGGGTA
AAGCTTTTTTCTGCACTATTGCCAGTTACTTCAGCGCCTCTCTTTCTAGACCAGAAGGAATTGAG
TCGATCGATGATTTACTCTTTTGCCGGTAGTCCTTCGTAGTGCTTCTCAACCTATATCCTGATCT
ATGGGACCCTCTTTGTATTTGTCTGTACGCCTATAAGAGAGGTTTCTATGGTGATTTTCGTTATG
TAATCGATGTCCGCAGTCTCGCTTTCTGCTCATTCGTAGAGGGTA
Right flanking sequence: Indices 405491 -- 405990
TATATTAATAGTAGATAAATTGCTGGTTCTTTACCAGGAAGAAAGATGCTACTGTCACTAAGGGA
ATAGCTCCCCTTCTTGTCTCGCTTAGGTTTTTTTTTCTCGATGGGAAAAAATGAGTTTCTGTCCT
ACCCCCTTCGTGAGACCTAGTTGCTTTCCCCAAGTGAGTTTAGTAGCGGAGCTGAAAATAAGAGC
CTTTTCTTGCAGAATCTAATCCATCCATCATAACGAAAAAGACTAGCTTCGGGCTTATCTATCCA
CGCTACGCTAGAGATGGAATCGACGTTCCCACATAAACTCATGCTTAGACGAACTTCTCGATGCA
CAGTCGTGGCAGGCTTCTCTGATTGGAACAATCGCTCTATTCCCTTTGCCTTTTATTTTAGGAGT
AGGAGCCGCACTGTTTGGCTTTTCTTTTTATGGTTGGGAATACTTCGCAACAGGTCCTACGTAGA
TGCCCGGCAGCTTCAACAATTCTTTGAAAGGAGGCAGCCTTCTCT
Found at i:405477 original size:28 final size:28
Alignment explanation
Indices: 405440--405497 Score: 116
Period size: 28 Copynumber: 2.1 Consensus size: 28
405430 TCGTAGAGGG
405440 TATTTCTTCATTCTTCTTTTCTTTATAT
1 TATTTCTTCATTCTTCTTTTCTTTATAT
405468 TATTTCTTCATTCTTCTTTTCTTTATAT
1 TATTTCTTCATTCTTCTTTTCTTTATAT
405496 TA
1 TA
405498 ATAGTAGATA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.16, C:0.17, G:0.00, T:0.67
Consensus pattern (28 bp):
TATTTCTTCATTCTTCTTTTCTTTATAT
Left flanking sequence: Indices 404940 -- 405439
TGTTGGGAACAGCTTGAGGCCATTTGAGCGAAAGATTGAGCATTGGATCAAGAGAGTGCATTAGC
CGGCTAAGTCGAAGCGTATCAATCCCAAGGTCGGCCTACAGATATCACTTTTAGGTCTTCTTCTT
TCCAGCGGAGGGAGCAAGGCCATTCTGAGGCTCAACCCCTTAAAGCTTAAAGAAAGTACTGCTAC
ACGCAATAAGCCAATCTATCTACATGATTCTCACATCTTGATCTTTCCACATTCGTATCATTGGG
TAAAGCTTTTTTCTGCACTATTGCCAGTTACTTCAGCGCCTCTCTTTCTAGACCAGAAGGAATTG
AGTCGATCGATGATTTACTCTTTTGCCGGTAGTCCTTCGTAGTGCTTCTCAACCTATATCCTGAT
CTATGGGACCCTCTTTGTATTTGTCTGTACGCCTATAAGAGAGGTTTCTATGGTGATTTTCGTTA
TGTAATCGATGTCCGCAGTCTCGCTTTCTGCTCATTCGTAGAGGG
Right flanking sequence: Indices 405498 -- 405997
ATAGTAGATAAATTGCTGGTTCTTTACCAGGAAGAAAGATGCTACTGTCACTAAGGGAATAGCTC
CCCTTCTTGTCTCGCTTAGGTTTTTTTTTCTCGATGGGAAAAAATGAGTTTCTGTCCTACCCCCT
TCGTGAGACCTAGTTGCTTTCCCCAAGTGAGTTTAGTAGCGGAGCTGAAAATAAGAGCCTTTTCT
TGCAGAATCTAATCCATCCATCATAACGAAAAAGACTAGCTTCGGGCTTATCTATCCACGCTACG
CTAGAGATGGAATCGACGTTCCCACATAAACTCATGCTTAGACGAACTTCTCGATGCACAGTCGT
GGCAGGCTTCTCTGATTGGAACAATCGCTCTATTCCCTTTGCCTTTTATTTTAGGAGTAGGAGCC
GCACTGTTTGGCTTTTCTTTTTATGGTTGGGAATACTTCGCAACAGGTCCTACGTAGATGCCCGG
CAGCTTCAACAATTCTTTGAAAGGAGGCAGCCTTCTCTTTTAGCA
Found at i:407342 original size:14 final size:14
Alignment explanation
Indices: 407325--407352 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
407315 GAACCACTAA
407325 CTATAAAGATAAAG
1 CTATAAAGATAAAG
407339 CTATAAAGATAAAG
1 CTATAAAGATAAAG
407353 GAGGTGACTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.57, C:0.07, G:0.14, T:0.21
Consensus pattern (14 bp):
CTATAAAGATAAAG
Left flanking sequence: Indices 406825 -- 407324
AGGAAGAAACTCCATAACATAAGGGGGAAAGCTCCACTCCTACTCCACCTAAGTTGAATCCAGTG
AAGAAGACTGGAACCTGAAAAGGCATCTTTTTCAACACTTTGATTAGTGTAACTACAAACCGCAT
TCTAGCAGCCCTAAAAAAAGAATCTCTAGCGAAGCTGTCAACTCAACCTAAGGAAAGCGATCCGC
TAGTCTAATCTATTCTCTGCTTTCGAGCAGTGAATTCCGGCCAGTCAACTTAGATGTCACTGGAC
TGGGCAAAAGCCCTTCAGTCAGCTTAGATACCGCTCCTGCTGCGTAAGATAATGTTGTAGAGGAG
TTTGTTGTCCTCAACGTTGACCGATTTCAAGAAGAGTCTAATCTAACGGGTCAAATCAAGTCAGT
TTTTCATTGACCTTAGAAGATGATTTCTTTTCCCCGAAATCCAGTACTGTCGAAAAAACAAAATA
AAAATCTAAAAAGAAAATGGAAAGAAACTAAGATAGAACCACTAA
Right flanking sequence: Indices 407353 -- 407852
GAGGTGACTGTAAAGGTCTCCGACCGAGGCTTTCATAGAAAGGAGCTTCGGTGTCACACTGGTCT
GGGCTTGTAGGGGCACCAGAAGCGGGTCTAGAGCCTGCTTCACACCCAAATCTCTTTTTGGACAC
GGACACTCAAATAAATAAAGCGTGCCCAACACCAACGTACAAGACAGATGCCAGGGCAATGAACC
ATAACCCCATTCAATATGGTTCCGACCTGCCTTGAAGCAGGAAGAGGAGCACCCGGGAAGGAGGA
CTAAGGATCTAATCTTCCCCAAGAGGGGAGAATAGGAAAGCAAAGGCTAAGGCAGGGGATCGGAT
TGAGCACTTTCATTCTTCCGGCGGAATCAAAGACATACCTCGATGCCCAGAATAAGGAAATAGAT
TCTTTATCCGCCTTCCTTAATGAAGACGAGGATTTTTAACTACTCGTATCAGCTCAACCAGTTGG
AATATCCCTTGATCTCGTATCCGTTGGTCAAGATTAGGAAAGTTT
Found at i:420530 original size:15 final size:15
Alignment explanation
Indices: 420510--420539 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
420500 AGGTTATAGC
420510 CTTTTATTTTACTTA
1 CTTTTATTTTACTTA
420525 CTTTTATTTTACTTA
1 CTTTTATTTTACTTA
420540 TTTAATTTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.20, C:0.13, G:0.00, T:0.67
Consensus pattern (15 bp):
CTTTTATTTTACTTA
Left flanking sequence: Indices 420010 -- 420509
TAAACCCAATAAAAAAAGTTTCACCCAGGTATACATATCCTTAGCTTGCGCCCTATTTGAGACTA
AGGCAGGTTTGGAACCCTGTCCTATCACCTTTATCAAATCCCTAGCTCTATTCCTTAGTGCAACT
GTCCTATTCCTACCATGGAAATATCTATATTTCTTTTGTTCTATAGTTTCGGATAGAAAAGCGGA
CGGTATCATATATGAAGAAAGAGATTTTAAAGCCATAAGTCGTGCTAGCAACAGTCTTACTGTCT
TGGCTCCTTTGCCCCGGTCTTTTATTTTTATAAAGTAGCACGTTCCTCTACGAAGGTGCGTTTTA
GGCCACGGTAGCAAGTGTTCTGTAAGGAGCTGTGGGACTAAAAGGCTTATGCTTATCGAGCCCTT
AATTAAGAGGAAGATGTGATTTAGTTTTCCCTGTTTTTCGCAAGTTAATCAGAATCGGCAAGATC
CCCTCTTGTTCTTGCTGCTTGGGAAGAGCAGGAAGAGGTTATAGC
Right flanking sequence: Indices 420540 -- 421039
TTTAATTTAAATCGCAAAAAGATGGATGGGCCAAATTGAACAAATCAATTTGCCTGTGCTATCGG
GCTACTCAGCTTCAAATCCTTCACGCTCCTTGGGATGCCTTACAGTCAGGGAATCACGAAGATGA
AACTAGACTCCTTTTTTGCAGTACCTTCGGTTGAGGTGCATTTATGATTTTTTCCAAAGCCTGAG
CCTCTGAACAACCTGATGAATCGCGTTAAATGTGCTTTTCTGGCGTCTTTGAGTTTATGTTATGA
GTTGATCCTAGTTCATAGTAAGTAGAAGGTGTTACGGGTCGGCCTCGGGAATTCGAGGAGCTACT
GACGTTAAGCGTTAAGATTGGACTGCTCTTGGGGGAACAGCTTAGTCCATCTTCAACTCCTAGCA
TGAAAGTGAAAGTCTCAATCCCAGTTCCATATTAAGAAAGTAGACGGACAGAACTCCCCGACCTT
GTTAGGACCCCTTCGGATTGGTCCTCTTCTAGTCGAGTAAGGTGC
Found at i:422153 original size:20 final size:20
Alignment explanation
Indices: 422128--422166 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
422118 AGGTAACTCG
422128 AGAGTA-GAAAGAACTAGAAT
1 AGAGTATGAAAGAAC-AGAAT
*
422148 AGAGTATGACAGAACAGAA
1 AGAGTATGAAAGAACAGAA
422167 CCAGTAGCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 10 0.59
21 7 0.41
ACGTcount: A:0.54, C:0.08, G:0.26, T:0.13
Consensus pattern (20 bp):
AGAGTATGAAAGAACAGAAT
Left flanking sequence: Indices 421628 -- 422127
TCTTCTTTCCCCGTTGTGAAAGGAGTTGGTTCCGTAGTTTTAGAATTCGGCTGATCCCAAGTACT
CCGTCTCCATCATTGCATATTTTTATATAGAAAGTAAAGAAGAAAAGGCATAACCAGAAGAATTG
TGTAAAATAAGTGAATTTATCCAGTTGAGGCATGATTGATTTTTTAAAAAGGATTCCCTCCAGAC
AGCTTAACTCCGTCAAGCCTGTACGAGTAAACAATAGATAAGGTTTGCTTGTTGGTTGTTGACCA
ACAGAAAGCATGGGATGCCCCACAACAAATAGATGGGAGCAGGAAATCTTTATCATTCGGCGTAG
TGCAGCTTATATAGAATAGAAGGGGCAAAGCGCTGTTCGTGGCACAGCTTTCTTATATTACGATA
TTTTCATTGATCGTAGCTAATTAGGTGGCAACAACCGAAGAAGCAGAAGAAGTAGCTGCTACCGC
TTCGTGGGCTTCTTCTTTTTCTGAGTCTGCTCGAAAGGTAACTCG
Right flanking sequence: Indices 422167 -- 422666
CCAGTAGCTTTGAGCTTTCACGTGTTTCAGCTCTTGTTCACAATCCAGTTGCTATTGAATCAGCG
TAAGGAGATGCCGATGAGGGTACAAGAAAAGAATGAGCTTTTGTTCAGAGCTTGAATCAGAATAT
CCTTCAGTAACTCCAGGATTCCCCTGGTAGGGCATACAGGACATACCAGGTGAGAAGTTCGGGCG
GAAAGATAGATCGAGTTTACTTTACCCTCTTGATTGACTTTCACTTTAGGACTGAAAGATAGCAA
AGGAAATGGCAGCAGTGCTTTATATATTAGGTCTTCGTTGATCACTTCTGCTTAATTTAAGCACT
TCTCTTTCGAAACCTAGAAAGCGAGAAAGAGAATAGTCAGTTCTTGTGAACGACTCCGATGCTAT
TTCTATTTAAGAAGATGGAGGAATAAGCGATGCTGCTAAGATCCGCAGTCGATTTAGCTCTTGAG
GGAAGGGAAAGGCGGACTTTAATTTGATGGGCTTTTAGGACTGGC
Found at i:434045 original size:14 final size:14
Alignment explanation
Indices: 434026--434058 Score: 66
Period size: 14 Copynumber: 2.4 Consensus size: 14
434016 ATACCCTATT
434026 AAAAGAAATAAAAG
1 AAAAGAAATAAAAG
434040 AAAAGAAATAAAAG
1 AAAAGAAATAAAAG
434054 AAAAG
1 AAAAG
434059 GCAGAAGAGG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.79, C:0.00, G:0.15, T:0.06
Consensus pattern (14 bp):
AAAAGAAATAAAAG
Left flanking sequence: Indices 433526 -- 434025
TATCGTACTTACTCAATTGAGGGTGAAATCTGTTCGATATGCAAGTGGTCTAGTCACTACCTGTA
AGGAAAGCACCCCCTTCACATGAGAGAAAGAGGCGGAGTGACGGGGAGGTATCGCCTTAACTAAC
TCTCTTTCCGGACCTACTCATCGAAAGATGCCCAAGCTCTTTGATAGAAGAAGCTTCAAATGCGC
AGTTAGGACAAAAGGCTGTTTGCAAGAATAGGCTCTGGGACTTTATCAAAGGGAATGATTGGACA
AAGAGAAGAAGGGCAACTAGTCTTCTTTCGACCAGTAAAGGCAGTTGAGTGAAAGCTCTTTCTAT
GCCTATGCCAAAGGGTAATCCCACAGAAAGGAAAAGACTTGACCAGTCATCTCTTCTTGGACAGT
CTTTGAATAGCCCTAGTTCGTACACAAGGGATGTCCTTCTCCTTCTTAGTAAGCCCTCTTATTTA
TTATTTAATTTAATTTCATATTGATTTTCACGTGCATACCCTATT
Right flanking sequence: Indices 434059 -- 434558
GCAGAAGAGGAAAAAGAGAATGACATAAGCAGCCTACTCTTGCAAAGAGCCTAAGCGAGCCTATG
TGACCAAACTCGCGTCTAGCGCTTCGCTCCTTGCTCTCTGTCCTTCTATCTCGATCAAAGCCCCG
GTTCTTCTTTCAAGTCTTTTACCATTGTGGTCTCCTTTCTTTCTAGGTTCAGCCTTAGATTCATT
CCCACGGTATTATACTCGGTAAAGCACTCTCTTATCTTCTTAGTTAGTGGCAGGATGCTTGGAGG
CATTCCTGTTGAATACCCCTGCATGAAGATAATACCCACCTTCATTCACTATGTGGTTCCTTTGC
CACGGCCCGTCAGTCGAATAGTTGTCTAAGCCTCTCACCAACTCCTTCTTTGCGGTAGGTCTTCT
ATCCGCATGAGTTAGCGTAACAAGAATGAATTTCTTGATTGTGGTGTCCCTTCTTTCCATGGTTC
CTTCATTTGTCTGTGCTCTCTACCTATGATGAAATCAAAATGAGG
Found at i:441010 original size:21 final size:21
Alignment explanation
Indices: 440973--441014 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
440963 TAATAAACTA
440973 CTCTTGCCTTTCACTCTTCTT
1 CTCTTGCCTTTCACTCTTCTT
*
440994 CTCTT-CCTTGTCTCTCTTCTT
1 CTCTTGCCTT-TCACTCTTCTT
441015 TTGAATCCCC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 4 0.21
21 15 0.79
ACGTcount: A:0.02, C:0.38, G:0.05, T:0.55
Consensus pattern (21 bp):
CTCTTGCCTTTCACTCTTCTT
Left flanking sequence: Indices 440473 -- 440972
TGGAGGTGAAAGCAAGGGCATAGGAATCGAGAGAAGGCAATCGCAGTTGCATTTCTCGAGCTTGG
GATTGTTGAGCGAAGTTCTCATGAAGATGAAGGGCATTCCAGATCGGATGTACATGAGTCAGATC
TCTTACTTGAGCTTGAGGATTGAAGCACAGATGTAAAGGGAGGTAGAGGTTATCCAACTGACCAG
CAGCTGATCTTTGCAGAGCCACTCTTCATATGATATGCGCTTTGAAACCTTGACAGCAGATCCAT
CGGCCCCCATTCGCCTCACCTACACGGAAAAGCTAGTAAGCGTACTCAATAACCGTTCTTGTCTC
GCACTAACTAGCTGGCATTTGGAAGCTGAATCCTACTTTCGAAAAGGAGATACTTTACTTGCAAG
ATCTGCATCGATGGTAATAGGTCCGAAAAGGCCTACGCTCATTTCTATGTATCGGTTCCTTCTTC
GGCTTCAGTTATAAGGGGGAAGTCATTCTTTCTACTAATAAACTA
Right flanking sequence: Indices 441015 -- 441514
TTGAATCCCCGGTTTAAGAGTCCCCGAAAGTAGGAGCTCCCTTTAAAGAATCATTGTAAGCCGGG
TTCTATCTTGTTTTCCCTTGGAGTTCCTCCTGCTCTGCATCTAAAGGACGCAGGTTTGTAGCACG
TACCTCAACCAATCCCTCTTTCATTTCACCCCCTCTGCTTCTCCTTACCCGGAAGCTCAAGTTCT
TATCAGTCAAGGTCTCTATCTGCGAAGTTAGCTAGTAGTTATAGCCCGCTGCTGTAAGCTATAGT
AAGCTCGGTATCTCGTATTTTTTAGCTGTAAAGCTATAGCAGCTATGAGTTATGAGCTAGTAAGC
TACCTTCCTTTCTTTAGTTATAGAGTTTTCTCGGAACATCGTCCGTTCCTACCGGACTCTCTTCT
TATTGTCACTGATCTCTTTCCGTCGTCTGTTTGTTTAATCTCCTGTCCTGGTGAAGTTCTACCTG
TCGTTGTGCTCTTTGTCCAAGATCATTTTGGTCTGGCCAAAGGGT
Found at i:442773 original size:12 final size:12
Alignment explanation
Indices: 442756--442794 Score: 69
Period size: 12 Copynumber: 3.2 Consensus size: 12
442746 GGTGTCCACT
442756 GGCTCAGGGGCA
1 GGCTCAGGGGCA
*
442768 GGCTCAGGAGCA
1 GGCTCAGGGGCA
442780 GGCTCAGGGGCA
1 GGCTCAGGGGCA
442792 GGC
1 GGC
442795 GGCGCAGCCT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.18, C:0.26, G:0.49, T:0.08
Consensus pattern (12 bp):
GGCTCAGGGGCA
Left flanking sequence: Indices 442256 -- 442755
TACTAATAACATAGAAAGTCAAGGCTTGGAAGCAAGCTACCAGCGCCTATCGGCGAGAACTGGGC
TTGGTTAGTAGTGCCCGCCCATTCTGTCTCGCCGGCAGGGCAGGGCGAACGGGGACCGTCGAAGA
AGTGCCTCAACGCGCCGCAGCCACTACTTCACCTCCTTTTTTGCAATTATGAACTCCACGGAACT
TTCTCGATTCCAACGCAACTTTTCCTTTTGGTCAGCTGTCCCGTCCCCGCTAATCAGAATCAGAA
CTGCCCGCTGATTTTAGAAGAAGGTATAACCTTTCTTTAGAACTATTGGGGAGCTCTTCTCGGGC
GGCGAGCTCCTGGATTTTAAAATCAATCGACAAGAGCTTTTCCGCCGAGGCGGACTCACCATTAA
GAAGGGCCCAAGCGTTGTCATAGAGGGGCCGTTGGACACTTCTATCACCCCCTCCCGATAGAAAA
ATTCCTAGTTTCACTCCCCACCGAAAAGAAAAGAGGGTGTCCACT
Right flanking sequence: Indices 442795 -- 443294
GGCGCAGCCTCCGCAGGTGCAATCTCTGCTTGTTGTTCCGCTTGAGGAATGGCTGCCGGAACAGG
AGTTGTGCCCGAAGCCACCTTTCTTCGTACTGAAGAAGGCCCTTCTCCATCCACCGGATCCGCTT
TTCTTTTTATCGAAGCGTCCGGGCTCTCGCTAGCGAGAGTTGGCGCACCCCCGTCTCCTTGAGGG
CGGGCCCCAGTGGATGAGGTTGATTGGTCGGGGGGCCTGTCGGCAGGGGCCCGTTCTGTTGAGGG
TTCGGAAGCGGCTTTTCCCTCCGTGCTTGAGGAGCAGTTGAGGTACTGTTTCCAACCCTCTGAGT
CGGAAACAGAAGAATCAGAACCGCCGGGATCATCATCATAATACAACACGTAGAGGAAACGGCCC
CTACGGCTATCAAGTGAAAGACCGAATTTCTGACTAGCACGACCACGAAAATAGTGAAAATAAAA
TATAGAGAAGGAGATTCAAGAGGAACATGAATAGCAAAGGCATAT
Found at i:456680 original size:29 final size:29
Alignment explanation
Indices: 456638--456696 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
456628 CTTTCCTATT
456638 TGTTCTTAGAAATAAAGTTACAGGGCTAG
1 TGTTCTTAGAAATAAAGTTACAGGGCTAG
456667 TGTTCTTAGAAATAAAGTTACAGGGCTAG
1 TGTTCTTAGAAATAAAGTTACAGGGCTAG
456696 T
1 T
456697 TTTCCGGCTG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.34, C:0.10, G:0.24, T:0.32
Consensus pattern (29 bp):
TGTTCTTAGAAATAAAGTTACAGGGCTAG
Left flanking sequence: Indices 456138 -- 456637
GCGACCGACTCTTTCGCTCTTAGCTTTACCACGTGTAGGCAGGGAGCTTTACAAACCCCGGATAG
GGCTTTGCAAAAGTCTTTCTCCAAAAAGAATAGATAGGACTATTTATAATAATGAATGCTCCACC
GCGATTACTGAGGGTCAGATCGAAGAAGTTCTTTGTTCGTACTCATGCTAGGTCATCGGCTAGTA
AGGACTACTGCTGACGAAGCAAAAAGGTATGTATTTGGTTCCGTCAGCCTTATAACTTGAACAGA
GAAAGGTATCGCTTATCAAAGAAGGGGGTTGGACCGCTTTGCTTGGGGCACCCAAACCCAAGACC
AACGCTTTCTTAATTGGGATCGCCAGATCCAATGCAATGGTAAAGGTAGTGACTCGGGGTTGATG
GGGGATTTGGTCCGAATAATCGAATTCCTTAGATCTTGGTTTCGAAATCGAGGCCATAACAAGGA
CTTTGTAACAGGAATGCAGCCCTCGGTTAAGCGCGCTTTCCTATT
Right flanking sequence: Indices 456697 -- 457196
TTTCCGGCTGGATGATTCTGAATCAACTACTTTGATCAGCCCAACCAGACCCCGGTGTTACCCTT
TGCGCATTAGCGAGCCCCTCTCTTAATGGTGTAAATGCCCAATGCAGCTTCCTAATGGAAATGTC
AAATGAACATCTTCGCAGATTCCTCGAGGCTCATCTTTGAAGAAAGTTTCCAGGAACAATGTTGT
ATGTAACCAGGATCTATAATCTATAGGATACCAACCTCCCCCCAAAAAAGCCAGTACAGTAGCTC
TCCTCTATATGGTTCACCTTCGAATTGGAGCTTTTTTTAATGGAAAGGGTTCTTTCGTGCTATCG
GAGAGGGGTCGAACCCTTAACTTATTTTATTATGTTGTACATAAATAGAATCTATTTATGTTATG
TAATATTAGAAAGAAAAAGGTGGCTGTTCTGTTAATGGGACCAAATGAGTAATGGGACCAAATGA
GTGACTTTTATACTGATTCCTCTTTGAGGGGTTGATTTTGAATGA
Found at i:457141 original size:17 final size:17
Alignment explanation
Indices: 457119--457153 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
457109 GCTGTTCTGT
457119 TAATGGGACCAAATGAG
1 TAATGGGACCAAATGAG
457136 TAATGGGACCAAATGAG
1 TAATGGGACCAAATGAG
457153 T
1 T
457154 GACTTTTATA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.40, C:0.11, G:0.29, T:0.20
Consensus pattern (17 bp):
TAATGGGACCAAATGAG
Left flanking sequence: Indices 456619 -- 457118
TTAAGCGCGCTTTCCTATTTGTTCTTAGAAATAAAGTTACAGGGCTAGTGTTCTTAGAAATAAAG
TTACAGGGCTAGTTTTCCGGCTGGATGATTCTGAATCAACTACTTTGATCAGCCCAACCAGACCC
CGGTGTTACCCTTTGCGCATTAGCGAGCCCCTCTCTTAATGGTGTAAATGCCCAATGCAGCTTCC
TAATGGAAATGTCAAATGAACATCTTCGCAGATTCCTCGAGGCTCATCTTTGAAGAAAGTTTCCA
GGAACAATGTTGTATGTAACCAGGATCTATAATCTATAGGATACCAACCTCCCCCCAAAAAAGCC
AGTACAGTAGCTCTCCTCTATATGGTTCACCTTCGAATTGGAGCTTTTTTTAATGGAAAGGGTTC
TTTCGTGCTATCGGAGAGGGGTCGAACCCTTAACTTATTTTATTATGTTGTACATAAATAGAATC
TATTTATGTTATGTAATATTAGAAAGAAAAAGGTGGCTGTTCTGT
Right flanking sequence: Indices 457154 -- 457653
GACTTTTATACTGATTCCTCTTTGAGGGGTTGATTTTGAATGACTTTCTGATTTCGCCCGGATTA
CCTCCACTCCCTTGATTCGGAGTCAGGAGCCCCTGTTCTTATTCGAAGGTCTTTGCTTACGCCGC
GCTTCCCCCTCCTTTGGTCAAGGCTGGCGGACTAACTGACGATTGAAAGGTAAACGGGAGAATGA
AATGGGGAGGTTGGAGGGTCTGCCTTACCGGAAATTGAGTATTGGAAGGAAATGAAAAGTGAACG
ATGGCTTGGATTTCATGATGGCTTAGGCTAAAAGGGAAAGGGCTTTGGTTGGCCATCGCCCTTTT
GTTTGGGCTCTTTCAAGACAACTCCTTCCGTTCGAGACTAGTTGCTGCCAGAGACCGTGGATTTA
ACTACTCCTCCCTCACCAGCAGGGACCCTTCTTCTGATTAGGCGCCGATACGGATTCATTCCAGT
AGGGATTGCTCTTTACTTTAGGTTTAGGTATCGATGAGGTATTTC
Found at i:479650 original size:56 final size:56
Alignment explanation
Indices: 479564--479669 Score: 212
Period size: 56 Copynumber: 1.9 Consensus size: 56
479554 TGAATGCGCC
479564 TAGGAACTACGATTCTGAAGAGGCTACGTTCCCGGCCTCCCCTCTTTCGGTTCGGA
1 TAGGAACTACGATTCTGAAGAGGCTACGTTCCCGGCCTCCCCTCTTTCGGTTCGGA
479620 TAGGAACTACGATTCTGAAGAGGCTACGTTCCCGGCCTCCCCTCTTTCGG
1 TAGGAACTACGATTCTGAAGAGGCTACGTTCCCGGCCTCCCCTCTTTCGG
479670 ATTAGATTCT
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
56 50 1.00
ACGTcount: A:0.18, C:0.31, G:0.25, T:0.26
Consensus pattern (56 bp):
TAGGAACTACGATTCTGAAGAGGCTACGTTCCCGGCCTCCCCTCTTTCGGTTCGGA
Left flanking sequence: Indices 479064 -- 479563
AACCAAAAAAGATCCTCAAACTCCGCTCCCCAAATTTAGGATTTAGGATGTAGGATGTGCTTTCT
CTATTTCCGTGTCCTGCTCCAACTCGATTTTTCAGTGGTTACGAAGAGATTCAACCTTCTTTATG
ATCCTCAAAGGGTTCGGGTCTTCTTGTCTTGGTTCAACGCGCTACAGATCTGTATATGGGACTGG
GGCAGGGGTTCTTCATCTATCAAGAGAGGGTTCCCGGTAATCAAGCTAGAACTCCTTCGGACCCT
TGCTTTGTTTTATCTTCGGAAGTCTCTACTCAGACGGAGATGGGTTTTGTTGATCCAGGTCGTAC
TTTATTGACTCAAGGAAAGTAGGTTTAGAAGGTGACACCTCCGCTAATTGTCAAATTGCGTCTAT
CGGATAACTACTGTAATCTAATTTCTCAGGTTCCTCAATGCTGGCAAAAGAGCTTTGAGACGGAG
TCCTTCCCGCCCCAGGATAGAATGTGAATCAATAATGAATGCGCC
Right flanking sequence: Indices 479670 -- 480169
ATTAGATTCTAGTGGCTTTCTCTCTTTTTTTCTCGCCCTAGCAGCAGAAGGCTACGCTCCTCGGA
TTCGTACCTCAGACTTAGAATCTTCGTCCTAAAGTTCTTAGAATTCAGTGGCATGGCTGAGGGGT
ATCTACTAAATCTTACCTTCTGGATTAAGCCTAGCCGACTATCGCTATCGATGCTTTTGGAGATA
AAGTTAGCCCTTAGGTTCAGAATAAGATCCCCTTTTTCCATCTAGACTAAGCCTAGAAAGAGAGT
GAGCCGATCAGAACTAGGAGATGATAGGATAGCTATGCTGGCTGAAACGCGCTTCACCTTAAAAG
AGATACTTTCTTAAGGTGATCGGTTCATTGGCAACGACAGATAGGCGCGATCAAAACATTGCTAA
TATGAGACCATCCTCTGCCGGAGGGATCAGTTTGACCAGGGCTCAAATCAGACCATGTAGGGCTT
ATTCTTTCTAAGAACAGTAATCCCAGGCTGATTAGAAAGCTTACG
Found at i:481696 original size:18 final size:18
Alignment explanation
Indices: 481673--481708 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
481663 TAAGTTTTTT
481673 AAGTGAATGGTAAGAAAA
1 AAGTGAATGGTAAGAAAA
481691 AAGTGAATGGTAAGAAAA
1 AAGTGAATGGTAAGAAAA
481709 GGTTTGGTAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.56, C:0.00, G:0.28, T:0.17
Consensus pattern (18 bp):
AAGTGAATGGTAAGAAAA
Left flanking sequence: Indices 481173 -- 481672
TACCTGTGCATCTCAACCCCAGACAGGAGATGACTTTGATTACCCGTTCCGCACCTGTATGACTG
AATTTCATGCTTCAAAGCAGAGTTGAATCAGGCTTGAAACCCTAGCACCGAACCCTAGAAGTGAA
CTACTCGAATTCAAAATAGGCTAATGAGTCCGCTGCACACTTTCTATATCCGTACCTAATGCCCC
AGGAAATCCAATCATTCGACTGAGAGTTCCGATCCATGTACTGTGCCTCTGAACTAGGACTCCTT
ACTTGACTTCAGAATGAGATGAGGGATCTAATACAGAATTCCTAGCCATCACAGCTTCCGGCTTC
CCTTCCGCACCTGGCTTAGTTCATTTCATTCAAACTAGGCTAACAGAACTAAGTGAAGTCGTTTC
ATTCTCTTCCCCCTTGCGTATTGCGTACTTACTTAATAAATGAATGAAACACAGTCTAATGCCTT
CCTTCCCCCTCACTCTCCTCGGTCAAGTGCTTAGATAAGTTTTTT
Right flanking sequence: Indices 481709 -- 482208
GGTTTGGTACTCGGCTCATCTTGGTTGAGTTGCTTAGAAAGCTCCCTCCTCTCGTCGGCCAAGCC
GCTTCTCCTTCATCTGTCTTTTTCTTTCCGCCTAAAAAAAAAGGGAAGATTAGCCCCTGCCCCTT
CTCTAAAAGCTTCTCTGATTCTGTTGACATGAATGAAGCCGTAGTAGGTCAAGAATCGGTTTTTC
TAATGAATGAACCGGCCTGAACTGAAAGGGAAGAGTTTGATTTCCAGCCATAGTCATAGCGGGCA
CTCTTTCTTGCTTCTTGTCTACTCCCATGCCTGCTTTCGGTAGGAAGACAAATAGGGGATCAATA
TCAATCAAGATTGTTCGTGATGCTGCTGCTTGATTTTATGTAATCCCGGGGTCAGGCTCAGACTC
GGATTCCTAGTCGGAGCTGTTGTTTTCCCGAATCGAAGGCTTTCTGTGGCCTTTCACTTCTCCCA
CTAAGATCAGACCTTTTCTGATTTGGATTTCCATTTTTTCTCCTT
Found at i:541729 original size:11 final size:11
Alignment explanation
Indices: 541713--541745 Score: 66
Period size: 11 Copynumber: 3.0 Consensus size: 11
541703 CAATGTCTGC
541713 CCTAAAGCAAA
1 CCTAAAGCAAA
541724 CCTAAAGCAAA
1 CCTAAAGCAAA
541735 CCTAAAGCAAA
1 CCTAAAGCAAA
541746 GAGCCAATGC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.55, C:0.27, G:0.09, T:0.09
Consensus pattern (11 bp):
CCTAAAGCAAA
Left flanking sequence: Indices 541213 -- 541712
TTTCCTTAAAAAAAAAAAAAATCATGGTAGAACCACAATAGTTGTAGATCCAGTTTTTCTATTTT
ATTGTCGAATATGATCTTTCTGTATTGTTTATCAGTGTCGAAGATTGTCTTTGTCTTATCCCACT
CCTTGAATAAGTCGTGCCTTAACCCCCAGTCCTTACGAGAGCTTTACGACAGGATCGACTATAGG
ATAAAGGTTAGGGTTATACGTTTCTACAGTAATCATACATTCTTCTTATTCCTCGAAAAGAAAAC
AAGAAATATAAGATCTGAAAAATGGTTAGGTGTATAAATAAAACAGATATACAAAGACACTGATA
TCCTGCCTCCGATCTTGGCGATCAATCTGTCGACTGTCTCCTCTCCAAGAGCTGTAAGGGAAGGA
GGAGGGGATACATTTAGCAAGCTAACACTTCCTTAAGGAAAGACAGAACCTTGGGTTAGCTACGT
AGCTGTGCTTTCTCTCTTTTTTCCCTTGTATCAATCAATGTCTGC
Right flanking sequence: Indices 541746 -- 542245
GAGCCAATGCCAGCTACTCTTCTAAGCCATAAAGCTATGGGCTAAGCGGGTGTCGAACTCATACC
TTCCACTCTAGGAAGTACGAGAATAAGGTGGGGATAGAATAGTAATAGTAAGCGCGCTCAGTCCA
CTCTTGTAGTATTAAGCCTTGGAGCTGGTGATAGCGCTATAGTTACCCTTTTGCCAACCCCGGAT
TCCCTCGTTGTATGAGTTACCCTTGCCCCATGGGATATTTCTCAGTTCAAGCAGAATCCGGTTAG
GGAGAGAAAGGCTTTTAGTCAGTCCCCAGAAGCAAGGAATTATAAGTAAGCAGAAGAGAGAGCGA
GGAAGGTGCCAGGTTCCTGCAGGAGAGGATTCTAACTCATGCCAATGGAAGCTGTTTCAAGGGAC
ATGCCCATCTGCCTTTCTGACCTTTGGTAAGATTGGATGTTAAAATGGACTAAGGCTTCATCTAG
TTATTATTATTCTTTCTCTCCATCCGTCTTATTTCACTCACTGAT
Found at i:553147 original size:22 final size:22
Alignment explanation
Indices: 553108--553150 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
553098 CTTCATCCGA
*
553108 ATAAGGAAGAGACAGGTACAAT
1 ATAAGGAAGAAACAGGTACAAT
* *
553130 ATAAGGAATAAACTGGTACAA
1 ATAAGGAAGAAACAGGTACAA
553151 GGAGTCCAGC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.51, C:0.09, G:0.23, T:0.16
Consensus pattern (22 bp):
ATAAGGAAGAAACAGGTACAAT
Left flanking sequence: Indices 552608 -- 553107
AAAGATGTAGGGGGACGGATTGGTGCGGAAAAGAGGGCGGCCCGCCCTCACCTTAGGCAGACAGG
GGGAGGAGAAGGAAGCCACTCCCTCGACGATTAACGGCTCACTTCGCTCGCTCACACAACCAAGA
AAAAGGAACTACCTTCTTATTCAGTCTTATTCATTAACAGCATTTAACAGCATTTCCGCCGGCCT
TCCGGCAAGAACTCTAACAAAAAACCTTGATGAATTAGATTAGAAAGGAAAGAAAGAGAAAAGGA
AGAAGAAAAGAAATTATCCTAAGGAAATGAAACTAATAACAAATAGGATAATAGAGAGAAAGAAC
AACTTAAAGCTCATAGCATGCTAGCCGCCCTAGCTACTAGAGCGCTTAGCTAACAGCTCTTGGCT
CAGAAAGAATAGCTCCTAGGGCTAAAAAAAAATGGAGAAATTACCCGCTCAATCAGATAGGACGA
CCTACTCCTTAGTTGAACCGGACTTTGCCACTCACCTTCATCCGA
Right flanking sequence: Indices 553151 -- 553650
GGAGTCCAGCTGAACCACCCAGATCCGCTTCTTTCATCAAGCAACACAGCCTAGTCTAACCCGAG
CCCGAGTTCGTATTGGTAAATTTCGGGTCAGCAGGCAAAGGAAAGGGAGCACCCACGTTCTACTT
GCATATAGAAGTCGATCGGCCATTCATATCACTATGGTTAGCTCCGACTCCTTCTTCACTTTACC
CCTTATACGAGGCTTTTTTTTTTTATTTAATTTAAAGGCAAAGAAAAGAACTTAGAGCGGTTTCG
AAGCGAGATTTTCAGGGCTTCCGAATTAACTAAACAAAAAGCTTCTACCAAGATATTTCACGCAG
CAGAAGCAACCTTCACACCTTAACTAACTTAAGCCGCAATCAACGCAAGAGCGCGCCTGCTCCTA
GGCTTAGGCTCGTCTTTTCTATTTTGATTTCCAACAAACAAGCAGAAGTCCCAAACTAACATAGT
AACTGCTATTTACTTACCCCCTTTTGAGCTCAATTCCTTAATTGA
Found at i:567214 original size:34 final size:34
Alignment explanation
Indices: 567171--567240 Score: 140
Period size: 34 Copynumber: 2.1 Consensus size: 34
567161 AGCTCTTGGA
567171 AGCTAAGCTCGTGTCGTAATCGAATTGGTTTGAG
1 AGCTAAGCTCGTGTCGTAATCGAATTGGTTTGAG
567205 AGCTAAGCTCGTGTCGTAATCGAATTGGTTTGAG
1 AGCTAAGCTCGTGTCGTAATCGAATTGGTTTGAG
567239 AG
1 AG
567241 AGTCTTTTTC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 36 1.00
ACGTcount: A:0.24, C:0.14, G:0.30, T:0.31
Consensus pattern (34 bp):
AGCTAAGCTCGTGTCGTAATCGAATTGGTTTGAG
Left flanking sequence: Indices 566671 -- 567170
TTTCATAGTAGCTCGGTTCTTAGGTGGCTTCCTATCCTATTAGCTCTTAGCTCGTAGCTCTCTTC
TTGTAGCTAGGTAGCTAGTGGTTAGGTTGTTATAGACGATATGACGATAGTCTTAGTCTTGTTTA
TCGTCTTCCCTTATGAGTGGAATACCTCTTCTTTAATCTGCGTGTGCCGGATCTCATAAATAACT
TACGCTATTTCCCGGTCATCCTTACCCCTTTCACAGCCGTAGAGAAAGGGGTTTCTTTTGTTTGG
AAATCCAGTTTTCGATTGTGAGCGGTTTGTGGTAAATATAGAGTTTACACATTAAGAACAGAACT
AGGTCGTCTGAGCTCGTTCCTCAAGCCATACATGGCTGAATAAATCACCCACAGTGGTCTGAAAC
ATACTTTGAACTGAGTTTTTATACTCTTTTGGGCGACCCACTCCTGTTCTAGTCGAACCAGTCGT
CTTTTTGTTCGTATCCGGGGCCTTTAAGAGCCAGCAGCTCTTGGA
Right flanking sequence: Indices 567241 -- 567740
AGTCTTTTTCTTCGTAATCTGGATGAGTGCGCGTCCTTTGTCTGCTGAAAGCCGGGTTGATATTG
ACGGCTGGAGAACTCTTCGTATCGTACAGAGGTTCCCGAAGACCCCTCACTCAATCGCCGGCTTG
ACCTTTCATTAGGATAGTGAGAGAGAGCAGGAAAGCAAGTAGCAGTCTAGGCTTTCTTTCCGGCT
AGTGCTTTCGATCTAGTATAGTAGGGTTATGCTCTTCGGGTGTCTTATCGGGTTTCCCCAGTACT
TACGGTTAGTTTTGGCTCCAGAATCCATTACATATAGTGAGTGTCTGGGGTGTTATCGGATTGGG
CAGATTGCCCAGTTGGTAATGTTATTTCGGTCACTGAAAATGAAATCAGTCAACATGGGGCCTAC
TCTGATTCGATCATTGCTCTTGTTGGTTTTGCTCCCGACTAACCTTTTCACATTATTGGTGTACC
CAATAGATGGGTCCCCCTCCAGTGCCTAGCGCGCCTCTGAGCCTT
Found at i:593725 original size:25 final size:25
Alignment explanation
Indices: 593680--593727 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
593670 GAAGCGAGAC
*
593680 TCGACTGTTAAGGACCCAGAGGGGA
1 TCGACTGTTAAGGACACAGAGGGGA
* *
593705 TCGACTGTTAAGGAGAGAGAGGG
1 TCGACTGTTAAGGACACAGAGGG
593728 AAGCACAAGG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.29, C:0.15, G:0.40, T:0.17
Consensus pattern (25 bp):
TCGACTGTTAAGGACACAGAGGGGA
Left flanking sequence: Indices 593180 -- 593679
CGCATTCGCTGCATCTGAAGGGACGATTTCAGATAGGTAGGTTGGGTTGCTCGTTGTGGTTGCCC
GGACCTCGATCTAGATCCAAGATAAACCAAAAGCATGGGTCGTGGTCGGCAGATATATATGATTC
TGCCGGGGCTTGGGCTTGACTTCTTTCTTCATGAATGATTTTGGAGAAGCCTGCCTCGAGAGAGA
CATATGGCATATCTGACTGCCTGATTGGCGAGCAGCTGTCCTCATTCATAAGTCCAAAGAACTAG
CAACCAAACTGGTCGCAAGCAGGAGAGTGACCAGGCCTGATACTGATTGAAACGTTTATTTAATT
GGAAGCCGTTCAGATAGCCCTAATTAGTTTTAATTAGTTTAGTCAATGTTGAGCTGTCATATCTA
GCTGCCATATATGTAAACATGCCCTAAAAGTAAAGGGATCATATTTCCTTTAGTAACCACTTTTA
CCCATCCGCTCTTCTCCTGACCGATTGGAGGAAGAGAAGCGAGAC
Right flanking sequence: Indices 593728 -- 594227
AAGCACAAGGTTGGTGACCCGGGGGAAAGCGAATGCAGATCTCACGCAAAGTGAAATCTCAAGAT
TCAGATTGGGTTTGTGTTCGGTGTGGAGTAGATAGGGCTATTCCTTAGCAAGGCTATTCAGTAAA
GGCGAGAAGGGATCTATAGCAAGGGCAGCCCGGGTCTACCCAAAGAAAGGCAGAGTTGAGGAAGA
TAGATCAAACAGCCTTAGCGCTTTAGCTTGAACTGTAACCTTACCCTCGCTACTGACCTGTCGCT
TGGCCCGAAAGACTGGAACTAGAAGTTCCTAGAAGTCAACTGTGCCTAGACCTCAATCAATACGC
TTACTGAGAGTACCGGTACCAGAACAAGAACAAGGATTTCTCTTTGGTCAAAGCCGCCGCACTTG
AACCGTAACCAGCTAATGCATCGCCTTCTATCTGCATTTCTAAGACCAGTCCCTTATTCTGCTAA
CCAATTAGGTTGGTTCATCAGGTGCCAAGGCATCTCTTTCTCCCA
Found at i:595613 original size:22 final size:22
Alignment explanation
Indices: 595587--595631 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
595577 TAGTGGAGCC
595587 TTCGTGTACCAATTTCAGTGGT
1 TTCGTGTACCAATTTCAGTGGT
595609 TTCGTGTACCAATTTCAGTGGT
1 TTCGTGTACCAATTTCAGTGGT
595631 T
1 T
595632 GAGTTTCGCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.18, C:0.18, G:0.22, T:0.42
Consensus pattern (22 bp):
TTCGTGTACCAATTTCAGTGGT
Left flanking sequence: Indices 595087 -- 595586
TCCGTTGGGACGGGAACATGTATCCCTCCCAACCAAAAATATTTTTGTCTAAATCAGCTTTCGGC
CTATCGATTTAACCGGGAGCTGCTGTTGAGCACTCTTTCCATCACCGGATTCCCTATGCGCTGAT
TGATGCTTCCTCTCCGACTCGATGAGACCACACTACTGAGTGAGCTTCTTTCTGGCGCTCTTCCT
AGGATTCCTAATGCCTCTTGCTTCAACACAGAATAAGGTCTTTTCTCGGCCACTTTGTCATGAAA
TGAAAGCACAGTGAGTGAGTCTTCTTTCCGAGTCGAGTACTAGGCAGTCAATGTAGAGTTCACTT
CATTTGTCAGACTCCCGGTACCGAAGCAAAGTACTCATCCGAAAAGACGGTTTGATCATGCCCTT
TGTCCTCAACCCATGGTTCTCCTATATCTCCTAACTTTCGCTTTGCTTTCTCTTGAGCCCGCATT
TCGTGTTTTTTAAGATATTAAGAGGTGAACCCACATAGTGGAGCC
Right flanking sequence: Indices 595632 -- 596131
GAGTTTCGCACTCCCGTCATCTTCCTCTTCTTTTTGGAAAATCCCAAATAGTCATCAGAAACAAG
CTAGCCGAGCATTGATTTGGGTGTGGGTGGGGTATGGTGCCCCAACGGATGGATCTCCATCAACA
TGGGATTTTTCCGAGGGGATCAATGTCTGGTCGAACCAAGCTTCCTTCTCTCTCTCTTGCTTCCC
CACCTGTGACTGAAGCTTCCACATGAACTTGACTTTCCTATCTGAGTAGACCGAAAGTTCTACTT
TTTGGGAGGGACATTAAAAAGGTAGCTTTCTCCCTGGTCGATCAGTCGTTCAATCCTTTCCTCTT
GATCAAATGCATTTCTAAAAGATTCTCACAACACAATGGACTCCAATACTGAACTGAGACGGACC
CAGACCCCCTACCGAAAGGGCTCTGTACCTATATGTTCTTTATCTCAAGCGATAGCTTTCAAGTG
CCCGACCCTCTTCCCTTGATCAATGAGTGAGAAAGCAATAGCCAG
Found at i:606704 original size:17 final size:19
Alignment explanation
Indices: 606668--606705 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
606658 ATTTCTTTTT
*
606668 TTATAATTATATTAATTTG
1 TTATAACTATATTAATTTG
606687 TTATAACTA-ATT-ATTTG
1 TTATAACTATATTAATTTG
606704 TT
1 TT
606706 GTCTCCATCA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 7 0.39
18 3 0.17
19 8 0.44
ACGTcount: A:0.34, C:0.03, G:0.05, T:0.58
Consensus pattern (19 bp):
TTATAACTATATTAATTTG
Left flanking sequence: Indices 606168 -- 606667
CGTTTTCGTGTTTGAAATTCCAGGTCTGGTCTTCATTGGTATTTGCTTTTTGCTCACTCACTACG
TTTTTTTTTTCTTTTTAGTTCTTCCCCCGCACGGGCGAGCTGTCTGAGGTCGATGGTGCATCCGG
TAAGCTCTATCGGTATTCATCTCCAGAGCCCGGTCAGAGCTGACTTTCACGAATAAACCCCGGTG
ACGGTTACCTGCTTTGCTTAACCTAACCGGCCAGAAGGTTCCTTTACCGATAGCCGACCAGAGAT
CTAAGGGTTGACGGTTAGTTAGTTCTCTTTTCTCCGTCCGGTAATAGAATTTCTTTACCGATAGA
GCAACCCGGAATCCTGTTCTTACTTTAAGAGAAGGTTGTACTATTTATTTAGTAGGAGGGGGAAG
TGGATCTCATTTCAAAACTGATCGAACCAGGAAGTGATCTTTACTAGAAGGAAGGAGAGCGAAAT
CAAGTTCTTTTCTTTTATTATTTAGTATTCTTTATATTTCTTTTT
Right flanking sequence: Indices 606706 -- 607205
GTCTCCATCAGTCAAATAAAACGGATCATTTCTGTGGGATCGAAGAATTTCATGAATTTCATTAT
ACCCCTTCCCTTCTAAGATCCTTACTTTGTGTCTGGTATTTCTATAGGAATAGAATAAATGATAC
ACAGATACAGACAGTAGAAAATATTTTCTATTACTCTTATATTAAATATTAAAATTAAAACATTA
ATATTAAAAGGAATAAAAGATGCCTTTGAATACTTAAATATAGATATTGGGATGTCTCTTAGTAA
TGAATAATTACTTCTCGCCTGATCTGGAATAGAGTAATAGTAATATATTCTATGTAAAACATAAA
CTTGCCCCGTCTAGGAACTTTTAATTAAGATAGGAATACACGGTTGCACAAAAAAATTGTTTTTG
CATCAGCCCAGAAAGGTCCGTTGAGCGCCTCGTGGCTATGTCATAATAGATCCGAACACTTGCCC
TGGATCGACTTCCAGATCATAATTGCTCTAGTGAATAACTAACGA
Found at i:614999 original size:17 final size:17
Alignment explanation
Indices: 614977--615010 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
614967 ATTATTTATA
614977 TATAAGGTATGCTCTTT
1 TATAAGGTATGCTCTTT
614994 TATAAGGTATGCTCTTT
1 TATAAGGTATGCTCTTT
615011 CCATTTTTTC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.24, C:0.12, G:0.18, T:0.47
Consensus pattern (17 bp):
TATAAGGTATGCTCTTT
Left flanking sequence: Indices 614477 -- 614976
TGGCGGAAACCGGACTGAATGAAAAGGCTAGCGATGTCACCTATAATCTAAGCTGTCCCGCATCT
TCTTCACCTGCTTAGTAAAATCCGCCTGAGGAAGCATCTGATTACGCCTTTCTTGCTTCTAGGCT
TGCTTTATTTGGCCAGGCAGCTTCCTACTTTGCACCTACACGTCCGCCGTCTTGTAACTTCACTT
CCTCTTTCGGAGGAGATCTTTCTTCGAGCCGTTAACCATCTCTGACTTTCCTTCCCCATCTGAGG
GCGTAAGAGTTCCAAAGGAGGAAAACAGACCCAGAAAAAAGGCGCCCAGCCGGTAAAAGCCTACT
CTGATTGCCTTATCCCTTGTCTCGCCCTACTAAGAAAAGTCAAAGTCTATGCGGCTAGGAACTGC
TCTTATGAATACCCGGCTTACACGAATAGCTCCAGAGAGCTCAGACTGAGACTGACGGTTAGGTG
CTCCGCTTCCTTCATTGGTAAATGCCCTAGCCTTTATTATTTATA
Right flanking sequence: Indices 615011 -- 615510
CCATTTTTTCTTTCCACGAGTTAGAAGTTCACTCCGCTGTTCTCAAGGCATTTCAGAGTAAGCCT
ACCTTCTTATACACGCGTTATACACGCGAGGCTAGAAGGGCATAATCAAGGGTGTGCGAGTGACA
GGCTAACTGGGTTCTCTCCAACTACCTATCCAGCAGGGCAGAAGGGAGTGTGGGATTGGGTTGAC
CTTACCTTATAGGTATCGATGGCATGGAAATACCCTCCCCGTTTCCATAGACTCGTCGGCGAGGG
GGAAGAAGCTAGAGGGAGTTGTTTTGCGCATTAATTAAGCACCTTGGCATGTATTCTCCTGTGCT
GCCGATCGTGGGAAAGCTCCGCTGGCACAAGCACACGGAAGAGCTGGCATGGGCAATCCGGTGGA
CCAATCCTATTATGGTAGAACTAGCTAAAGAAGCCCGAAGAAAGAGCCTTTTGGATGGGGCTAGG
GCATTTGCTTCAGAAGGCAAGCATCAACTCCATGGCTCACTGATC
Found at i:622450 original size:13 final size:13
Alignment explanation
Indices: 622432--622458 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
622422 TGTCCAGAAA
622432 TCCGTTTTCGGCC
1 TCCGTTTTCGGCC
622445 TCCGTTTTCGGCC
1 TCCGTTTTCGGCC
622458 T
1 T
622459 ATATATCGAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.00, C:0.37, G:0.22, T:0.41
Consensus pattern (13 bp):
TCCGTTTTCGGCC
Left flanking sequence: Indices 621932 -- 622431
ATTGATTGGATTGGTTCATTTCGTGGCTAATCCGAAAAGGTCAGCCTATAGACAGACCTAATTTG
GATGGAAATTCCCACGGAGATGATTAATAAGATATCCCCGGGCTGGCTATGTCATCTGTCTACGT
TTAGAGTGCTTCCCCGCAAAAAAAGATGGAAGCCTATTTGCTAATACCAAGCAATTATCATGATG
AACTTTTCAACAAAAACAGAGAAAAACAAACAAGATAGCAGGTTACCAAGACAACAAGAGCGACA
AAACACTATAGCGAGGATACAATAGATAGACTTACCCGAAGGCTAAAAAGAGATATTTCTTTTTA
GCCTTCGTCCCTCGGCGGCCTCCTCTTTAACTAGGGGGTTACGCCCATCCCATTAAAAATCATTT
GAGCTTCCCCTTTCCTAAGATCCTGGACGTGGTACTGACGCATGAACTTGGTTACTGGTTTTACC
GGTTGGCAAGTCAAGTAAGGAAAGGTCTGTTCATTTGTCCAGAAA
Right flanking sequence: Indices 622459 -- 622958
ATATATCGATTGAACCAGGGGCTGGGCTCATGTTGTGTTGACAGACATAAGAAGTAGGATTAAGA
ATAGGGGAAGAGCAGCTCTACTTCTACTTCTGCTTATGGAAAGACATAAGAAGCACCCTCTAAAA
CATGCAAGATCTCTTATTAAGTAAGCCCTTGTTGGCATATCAGGTGCCATTGAACACAGTCCAGG
GAAAGCATCTATCTATAGTGATAGTGATCCATCGCCTTGACTTGAGTACCACATCTCTTTCCTGC
CCGCTTGTAGCGGTTGGTTAGACCGGTTAGAAGCAGAATCGAGAAAAGCAGAACAAGGGCGTTCA
GGCTTTCTTTCTGAAGAGATGGGCGCGATCGTCTTTGTTTGAGGAAGAAGCATAAGCGCCCTTAT
ATTTATATATAGTAAGCAAAGGGCAAGGCCTACCCTTAGTTTAACCATCTCTCTTGTATCTCTCG
GAAAGCCTTTTGGTTGTGGGGCTATTGTTTCCTTGAGACAGGGTT
Found at i:634813 original size:14 final size:14
Alignment explanation
Indices: 634794--634822 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
634784 GGCTTACTGT
634794 TTAGGTAGGATAGA
1 TTAGGTAGGATAGA
634808 TTAGGTAGGATAGA
1 TTAGGTAGGATAGA
634822 T
1 T
634823 GGATGTAGTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.34, C:0.00, G:0.34, T:0.31
Consensus pattern (14 bp):
TTAGGTAGGATAGA
Left flanking sequence: Indices 634294 -- 634793
GCAAGGACCCGCAACTCTCGAAGGGGCCACCCACCGCCCGATGTAGCGATGTAGCAAATCCTCCC
TTTACTCAATGTACCGCGCTTAGCCTCTTTCAATCAAGGGAAAAAAAAAGAGTGACGAACCCGGT
CATAGGTTGGTCCAAAGAACGAGAGTCGGCTTCCTTAAGGGAGTTCTTCCTCAGTAGCTCAGTGG
TAGAGCGGTCGGCTGTTAACTGACTGGTCGTAGGTTCAAATCCTACTTGGGGAGAATTTTGAGTT
ATCGCTTTTCTGACGCCTGTTTTTCTCTTTAGTTTCTAAACTAGCAGAATCGTGGGACATCAAAA
GTGGGAAGTTGATTGTAGGGTTTTATTCTTCACTCTCGTATAGGTGAACTTGGTTCGTTCAATTC
TTAGGGAAAAGGAAGGATCCACTGTGAATGAATGGGAAGACTGGAGTAGTATCTTCATTAGCCGG
AAGGACTCCACTAGCTCGAAGAACGAACAAGAAAAGGCTTACTGT
Right flanking sequence: Indices 634823 -- 635322
GGATGTAGTCCAATGGCTAAAGCTCTGCCAGCTTCTTGTAGACTGAACTCTCTTCTCTTTAGGTT
CCGAGTTGCTTTTTTGGGGGTAAGATTTTTCTTCGCCACTAGTACCAACGAAGTTCTTGGTTATT
TGAAAGGAGGAAGGAAGATCTCCACTCATTTCATTCATTCAGTGCCTACGGCGAGGCGCGACCCA
CAACAAACAAAGGCAACGAAGTTGCTTGCTGTAGCCCTCTTTTAGTAGACTAGGCTGAGTAAGCG
TAAGCTATTTAAGTAGGCAGGGTAGGCTCGCAGCTTCGCCAGAAGCGACTAGTCGCCTCCTTTCC
TCCGCCGAAAGATGCTTAGCCAGAAGCGACGAAGGGGGGGCGTCGGGAAGGCCGACGACTACATG
ACATGAGGGAGAAGCTGTCGTAGAAGCTTTGCCCCTTGCTTTACAGAGATTGTTATGAACTGACT
AAATGACTAGATTCTCCCGGCTAAGCTAATAAATAGTATTTGTTC
Done.