Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_029693
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 598970
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.28
Found at i:32874 original size:14 final size:14
Alignment explanation
Indices: 32855--32882 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
32845 TCTCTATTTT
32855 TTTAAGAATACCGA
1 TTTAAGAATACCGA
32869 TTTAAGAATACCGA
1 TTTAAGAATACCGA
32883 GTCGGGGTCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.14, G:0.14, T:0.29
Consensus pattern (14 bp):
TTTAAGAATACCGA
Left flanking sequence: Indices 32355 -- 32854
TGTGGACCGAGGAGAAAGGGGCTCGGCGAGAAGAGGATTGTACCATGAGAGAAGCAAGGAGGTCA
GCCTCTTTCAAATATACAACATGGATTCTGGCAATTCAATGGAGTTGGACTCTCATGTCGATCCG
ATCCGAATGAATCATCCTTTCCACGGAGGTAAATCTTTGCCTGCTAGGCAAGAGGATAGCAAGTT
ACAAATTCTGTCTCGGTAGGATATACATGTATTTTCTTTCTATTACTATGAATAAATGAAGTAGT
TAATAAATGAAATAAAATAGTTAAGGGCCATTATCCTTTTTGTAGTGATGAATCTTGTATGTGTT
CCTAAGAAAAGGAATTTGTCCATTTTTCGGGGGCGTGGAAACACATAAGAACTCTTGAATGAATG
GAAATGGAAAAGAGATGTAACTCCAGTTCCTTCGGAAATGGTAAGATCTTTGGCGCAAGAAGAAG
GGGTTGATCCGTATCATCTTGACTTGGTTCTGATTTCTCTATTTT
Right flanking sequence: Indices 32883 -- 33382
GTCGGGGTCTTCTCCTACCTGTATCGAATAGAACATGCTGAGCCAAATCTTCTTCATGTAAAACC
TGCTTTATTTAGATCGGGAAAATCATATGCTTTTTTGAAACCATGTGCTATGGCTCGAATCCGTA
GTCAATCCTATTTTCGATAGGAGCAGTTGACAATTGAATCCAATTTTCCCATTATTTTCGTATCC
GTAATAGTTCGAAAAGAGGGCCCGACTCCAAGTTGTTCAAGAATAGTGGCGTTGAGTTTCTCGAC
CCTTTGACTTAGGATTTTTCAGTTCTATTTCTCGATGGGGGCAAGGGAAGGGATATAACTCAGCG
GTAGAGTGTCACCTTGACGTGGTGGAAGTCATCAGTTCGAGCCTGATTATCCCTAAACCCAATGT
GAGTTTTTCTATTTTGACTTGCTCCCCCTCCGCCGTGATCGAATGAGAATGGATAAGAGGCTCGT
GGGATTGACGTGAGGGGGTAGGGATGGCTATATTTCTTGGAGCGA
Found at i:38599 original size:13 final size:13
Alignment explanation
Indices: 38581--38606 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
38571 TCCTGCGAGC
38581 TTAGTTTATGAAT
1 TTAGTTTATGAAT
38594 TTAGTTTATGAAT
1 TTAGTTTATGAAT
38607 AATGCAGCAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.00, G:0.15, T:0.54
Consensus pattern (13 bp):
TTAGTTTATGAAT
Left flanking sequence: Indices 38081 -- 38580
AAGAATAGACGGAGACGAGACGTACGATTGAAATCACGTTTATGAAAGCAATGGCTCTTAGCCGA
CTAAGATGACCACATAGTGGTATACTACTTCACGTAATTCACGTAATTTTCCACTTTACCACTAT
CAGACTAGACCGGAGCTTTTGAATAGGGCTTTGAGGATAAAAAGACTAGCCGGAAAGCCATTCCC
CTGCTTGCGACCGCTGGACCACTTGGAATGATGGAAAAGAGAGTACAGAGAGCATTCCATATGGG
GCTTCCCATCGGGGCTACCATTTTCTCAGGCCCGATCGAGGTTCTCTTCTTTCCCGTTCATATGA
AAAAGACCTGCAATGCTAATCTCGTTAGGCCACCCGAACCCATCGAACCGGAGTTAGATAGGTGA
AAAGATAACAAGACAACACCTGCCTATATCGCTCCTGTCTAAGCGAGCGAGACTTTTTCCATTGA
TATTTCCATATCATGTAGCGAGACTCCACTTTAGATCCTGCGAGC
Right flanking sequence: Indices 38607 -- 39106
AATGCAGCAATCGTAGGGTCGACAGTACCGGTGGGCTTTGAGCTACCAGAGCAAGGAGATAGAGC
TTGAGCTTTTCCTTCATGGACCAAGGCGACTCTCGTTAGCTCTACTTGGGCTTAGTGCGATTCGA
AACTGGGATTTTTTCTAGCCCGAAGAACGAACAAAGACAACAAGGAGCGACTGATAAGGAGCGGT
TCAAGCTTTCTGGCCATTCCAACTGCCTCCATTATTCTACTTTTTAAGCGCCATAAGCAGCCAAG
CATAGTGGTTCGCTCAAGCAATGGAGTTTGCGAAACTTCCGTTCCGGTAGTCCTTAACGCAAGGA
AATAGTAAGATCAGACCCTCGAATTCGATTACACACAAGCTGCCAAGTAAGCTCTCGAAAGAGCT
ACCTCAGAATGAAAGCTACATCAATCCAAAGGAATTCAATCCGTTATATCTCCACCTCGTAAAGC
CGTAACAGCATCGACTCATTAATGCGCCCTCAAGGGGCAGCCTAT
Found at i:82498 original size:15 final size:16
Alignment explanation
Indices: 82468--82500 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
82458 TTCTATTCTA
*
82468 ATTATAGGATTCTATT
1 ATTATAGGATTATATT
82484 ATTATA-GATTATATT
1 ATTATAGGATTATATT
82499 AT
1 AT
82501 ATATTATATA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 10 0.62
16 6 0.38
ACGTcount: A:0.36, C:0.03, G:0.09, T:0.52
Consensus pattern (16 bp):
ATTATAGGATTATATT
Left flanking sequence: Indices 81968 -- 82467
GCAAGTTCAGTCTTTTCAGGGCGAGCTGACCGCAGAAACCGTAGACTTCCATGATGAACCCACCT
TAGCCACCTCCGATCAGACAGAAAGATGCGATCGTTAGAGATTCGACGATTCCCGGTTGGACCTA
TTCAAGCGATTGAACGAGATACTCGACAACTAGAAAGACGCACTTGAATACTGAATGCTATGAGG
AGAAAGAATGACTATCACCAACCATAAAGACGATAAAAGAAGGCACTCCCGTTCCCCCGAAATCA
TCTTCTGTGCGTGGTTATCCAATCATGATGTGGTAGGCTTAGTAGGGCTCGAACCTACAATCTAA
CCGTTATGAGCGGTACGTTTCAACCAATTAAACTATAAGCCCCTACAGATCTCTACATGCAATTC
GCTCACTTCGGGAAGAGCGGACGGAAGGCGACGGGGAGGCCTTTGCTCTATCTGCTTCTTCCTCT
TCTCAGGAATGAAGAATTAGATAAAAAAAAATGGATTCTATTCTA
Right flanking sequence: Indices 82501 -- 83000
ATATTATATATATAATATTCTATATCTATTATTAGAATGAATAATATAATTAAGCAAGCGGCCCT
TTTGCGACTCAAACTGCCGGTACGCTTTCCGGCTCGCAACGACTCAAACGGGCGGAGGCTCTCTA
TTTGCTTGCACTGCCGGCTGTTCGCCTTTAGTTAGAAGTAGAAGTCGCTCTTTGCCCCACACTTC
TAAAAAAGTATGGATTAATTCAGTAAGAAAAAAAAAACTTGGTTACGGGAACCGAAGGTTAGGCC
GACTACTTACTTTCTCCTTACCCTTAACAGGATTGTCTCCTACCGATCGAGGAAAGGCTTAGAAT
CCATGCTTTGACCGGTAATGTCCAATCTAAGAACGTCTTGTGCCTTTTCCTGGGCCCCCTTCATT
CTGACTTAGCTAATTCAATTCTTTCTATTTCTAATGGGCTTATACTTTTTTCTATATCCCCCGAG
AAAAGAAAGTCCTGCTATATCTAATGTATTTTTTCCAGGACCGCT
Found at i:98802 original size:21 final size:21
Alignment explanation
Indices: 98777--98819 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
98767 CCTCGTATTA
98777 TATTATAAGATCATCTCACCT
1 TATTATAAGATCATCTCACCT
98798 TATTATAAGATCATCTCACCT
1 TATTATAAGATCATCTCACCT
98819 T
1 T
98820 GTGGTCGACA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.33, C:0.23, G:0.05, T:0.40
Consensus pattern (21 bp):
TATTATAAGATCATCTCACCT
Left flanking sequence: Indices 98277 -- 98776
AGAGATAGGAATAGGAATTATAGTACCATTGGAAGAAGGGGCACCTATGGGAACATCTCTACTGA
AAAACCATTTCAATAGTACGGGTGCTGCCGTGCCACGAGGCACGACCATGGAAGTAATGAAAAAG
AAAAAGTTATGTAGTTGGACCATGTGCTCTATCCGTTCGAGTTTCGCTTCTCTAGAGAAGGTGAG
ACGCTAAAAATGAAAGTGTTCGCAACGCATACCGAAAGGGTACCAATGAAGCCGACCATTAATGA
CTAGTTCGAACACCAGGATCAGACCGCTCTTAGAAAGAAAAGCAAACTCTCCCGGAGCCCAGCTC
CAACTACTTCTTAGTAAGTGAGGTGAGGTACTTCTTTCGGGGTCGCCCTTTTTTGGTTGAAGCAG
CCACGACTTTGGTCGTAGTCAGTTCAAACACATAAACCCAGTCCACTTGCAGCCATGTTGATCAA
AATGACTAAGTTTCATGACTTGACCAGTCACTCGCCCTCGTATTA
Right flanking sequence: Indices 98820 -- 99319
GTGGTCGACATTCCATTCCCCTTAGTCGTAGGTGCTCGTTCTATTTTGATTTGAATGGGCCGGGT
CTCCCGAGGTACATATAGCCGGCCTTTCGGGTGTCTCGGTGATACAAACAAAAACGAATTCCTCC
CGTTGGTCGCCTCTCTCCAAGCCAATCCGTCACCAAAGGAGGAAATAGAATCGAATAATCTACCT
TCTTTTTTCCTTCCCTCCCCCGACAATCAAGCTGCACTTCCTTCTAACAAGTGGCTGAGAGTTAG
CAAGCTACCTTGGCAGGCGGTTCGCTGTCCCCTTCCTTCCTTTCCGGTCCGGCCGCGGTACGGCA
CCTGAACTCGAAGCTACGATCCGATTGGATCTGATCCGTTCAGATTCCACAGATCCAGCCGATTT
GGTCTGGTCCTATCCGACCCAACCCCAGAACTTAGAATGGCCGGCGTGTTTTGGACAGTAGAACG
GGAAGAGGGGGCGTCGTGCCCATTCTCTCTCCGGGCACGAGCAGG
Found at i:105339 original size:19 final size:19
Alignment explanation
Indices: 105315--105353 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
105305 CAAAGAGCTG
105315 TTTTCTTTCTTGCTT-TGTT
1 TTTTC-TTCTTGCTTCTGTT
*
105334 TTTTCTTGTTGCTTCTGTT
1 TTTTCTTCTTGCTTCTGTT
105353 T
1 T
105354 GGGCTTGCTC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 8 0.44
19 10 0.56
ACGTcount: A:0.00, C:0.15, G:0.13, T:0.72
Consensus pattern (19 bp):
TTTTCTTCTTGCTTCTGTT
Left flanking sequence: Indices 104815 -- 105314
TTCTCCATCCGCCCGCCAGCAGCAGGGGGGTTCGATTCCCGTTATACGCGATGTGGCGAAGAAAA
GCGCTTGTTATTTGCGGAAAGGAAGAAGTCATCCCTCTTGCTGGAGGAAACTACCTTTCTATCCT
TCTCCTGCCCCTCTCAGTTGGAAAAAGGGCTTTCGACTTTCCCTAATCTCCTTTGCTCCCTAATC
CATTCCCGGTGCCATTCAACTATCTGACAATAGAGTATCTAAGTCAAAGCTGTTCCCGGGTTCAG
GTGAAGAATGTTAGAAAGACTCTCATGAAAAAAACCTCTAACTTGGTTCGAGTGGCTGATAGCTG
CTTATCGCTCCTGTCCAGTCATCTTAGTCCATGGCTTCTGTTTCATGCTTGGTTGATGGAAGACA
GCTTTGAGTGCCGTTACTTTCCCCCTCCATGCTTGAAGTTCATTCCTCCGTTGTGCTTTGTCTGT
CATCTTCTTTCTTCCCTTCCTCGGGCACAGTAAGACAAAGAGCTG
Right flanking sequence: Indices 105354 -- 105853
GGGCTTGCTCCTCTGTTATCCCTGACTCCCTAAACTTAATGAATGAAGGAAGGGTCTCCGCTCCT
TACCCTATCGGGCAAGTGGCTTACACTCCTTGCTTGCTTTCATCCTGCTTTTAGTGCCGCTTGCT
TGCTCGAAGGAGGGGCTACCGCTCTTTAACCTCGTCGGTAAAGCGGCTTGAATAGGACTTTCCCT
ATTTTCATTGGCCTTTTCTTCGATGTCAATGTGCTCAGGTCCTTTCTTTGCCCCTTCCCTTGGGT
TGGGCTCTCCCTCAAATGCCCTTTCCCTTCGTTATCTCTACATGAGTGAAACTCAAGCACTCGAA
TATCAGTAGATTAGCGTCACGCCAACGCAACTCTCAAACCATCGGCGAGAGGAGAGTAGGTCCGG
CTATGACTTTCATAGGAACCGTTGGGCCACTATGTCATAGTGAGAGTAGGGACCCATCCCATATG
ACTCAGAGTCAAAGAAAGCTCTTAGCCTCCGACCAGTGAAGATCA
Found at i:153253 original size:20 final size:20
Alignment explanation
Indices: 153228--153266 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
153218 AGGTAACTCG
153228 AGAGTA-GAAAGAACTAGAAT
1 AGAGTATGAAAGAAC-AGAAT
*
153248 AGAGTATGACAGAACAGAA
1 AGAGTATGAAAGAACAGAA
153267 CCAGTAGCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 10 0.59
21 7 0.41
ACGTcount: A:0.54, C:0.08, G:0.26, T:0.13
Consensus pattern (20 bp):
AGAGTATGAAAGAACAGAAT
Left flanking sequence: Indices 152728 -- 153227
TCTTCTTTCCCCGTTGTGAAAGGAGTTGGTTCCGTAGTTTTAGAATTCGGCTGATCCCAAGTACT
CCATCTCCATCATTGCATATTTTTATATAGAAAGTAAAGAAGAAAAGGCATAACCAGAAGAATTG
TGTAAAATAAGTGAATTTATCCAGTTGAGGCATGATTGATTTTTTAAAAAGGATTCCCTCCAGAC
AGCTTAACTCCGTCAAGCCTGTACGAGTAAACAATAGATAAGGTTTGCTTGTTGGTTGTTGACCA
ACAGAAAGCATGGGATGCCCCACAACAAATAGATGGGAGCAGGAAATCTTTATCATTCGGCGTAG
TGCAGCTTATATAGAATAGAAGGGGCAAAGCGCTGTTCGTGGCACAGCTTTCTTATATTACGATA
TTTTCATTGATCGTAGCTAATTAGGTGGCAACAACCGAAGAAGCAGAAGAAGTAGCTGCTACCGC
TTCGTGGGCTTCTTCTTTTTCTGAGTCTGCTCGAAAGGTAACTCG
Right flanking sequence: Indices 153267 -- 153766
CCAGTAGCTTTGAGCTTTCACGTGCTCTTGTTCACAATCCAGTTGCTATTGAATCAGCGTAAGGA
GATGCCGATGAGGGTACAAGAAAAGAATGAGCTTTTGTTCAGAGCTTGAATCAGAATATCCTTCA
GTAACTCCAGGATTCCCCTGGTAGGGCATACAGGACATACCAGGTGAGAAGTTCGGGCGGAAAGA
TAGATCGAGTTTACTTTACCCTCTTGATTGACTTTCACTTTAGGACTGAAAGATAGCAAAGGAAA
TGGCAGCAGTGCTTTATATATTAGGTCTTCGTTGATCACTTCTGCTTAATTTAAGCACTTCTCTT
TCGAAACCTAGAAAGCGAGAAAGAGAAGAGTCAGTTCTTGTGAACGACTCCGATGCTCTTTCTAT
TTAAGAAGATGGAGGAATAAGCGATGCTGCTAAGATCCGCAGTCGATTTAGCTCTTGAGGGAAGG
GAAAGGCGGACTTTAATTTGATGGGCTTTTAGGACTGGCCCGGAG
Found at i:158854 original size:13 final size:13
Alignment explanation
Indices: 158836--158864 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
158826 GGATGAGTAT
158836 AAGAATGAATTAC
1 AAGAATGAATTAC
158849 AAGAATGAATTAC
1 AAGAATGAATTAC
158862 AAG
1 AAG
158865 GGGTATAGAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.55, C:0.07, G:0.17, T:0.21
Consensus pattern (13 bp):
AAGAATGAATTAC
Left flanking sequence: Indices 158336 -- 158835
CGCCTGACCCACTTTCCACTGTGAACCTGCGCCGACACAAGACACAACCGCAGCAGTTCGACGGA
GAGCATGGTTCCTCCTCCTCACGAAATGGATTTTCAGTTCTTTGCCTCGGGTCAGCGGATGGTCA
GGGGACAGGTAATTACATTAACTAACAAAGCGAAATGGATAGGGATAGCTCGCTTACTACCTTCT
GGTCTCATCCAGCGTCTACAAGCGGAGAATTAGTTATAGCGTAGGGGTGGAAAAGAGGAAGAGTG
CCCGCTAGAATCTTCTTTCACATCCATCTTTCTGCGTCAAAGCTTTATGTTTGCCGCCCATTCTT
ATTCATCATACGACACGAGAAAGACAAAACGAATATCACAAGTAGAGTGAAAAGCATAATCTAAC
CTAGATGGGAATCCGAAGACAAAAGTTGGAATCTAAATCCGTTGAAGACAAAGAATACTGCGTGG
AAGCCATTGGATTTTCAAGATGTAGATGCGAAACCGGATGAGTAT
Right flanking sequence: Indices 158865 -- 159364
GGGTATAGACGTATGACTAGACTATGTTTTATAAATTGATACAACTTCTGAATTGAAGGCTCTGG
CAAGAGTTCGTGAATAGTCGACGTAAACAGATAAGAAAGAAGGATTCTAATTCTAGGCCAACCGG
CCCTAACTGATAGGGGTATTGGTCTTCTTTACCAATGTTTGGTAAAAAAGTTATATTGTACCCGA
CCTGTTCGGATATGTGTTAGAGTCGATAGGAGGTTCCCTCCCGAACTCGATCAAAATAAGGACGG
ACGAATATGTTTTGTAAATCTCTCACTGGAGCATCCTCAGGAAAAGGTGTAAGTGAAGGAGTTGC
CCGATCCCGAAGAAATTCACATACTCTCTTTATCCTCAGAGTTCTTAATGGCTTTAGTAAGGAAA
GTCTTAAAACCAGCCTGCCGTTTGGTCTTGTTCTTCCCTCTATGCCAAGATAAATCGAAAGGAGA
AATCTTGAGATCCCCGGTAGCGGGAGGACCCATTAGAGCTGCAAG
Found at i:185562 original size:15 final size:15
Alignment explanation
Indices: 185542--185572 Score: 53
Period size: 15 Copynumber: 2.0 Consensus size: 15
185532 ATAAAAAATA
185542 TAAAAAAGAAAAAGGC
1 TAAAAAA-AAAAAGGC
185558 TAAAAAAAAAAAGGC
1 TAAAAAAAAAAAGGC
185573 ACTCATCAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 8 0.53
16 7 0.47
ACGTcount: A:0.71, C:0.06, G:0.16, T:0.06
Consensus pattern (15 bp):
TAAAAAAAAAAAGGC
Left flanking sequence: Indices 185042 -- 185541
AGGCTGGGCTGCGTACTTTTCGGCGCCCACCTTTTCTTTAGGTGTTGGGGCAAGCCCCAGGAAAG
TCTAGGTTGGCTCCCAGCTCCATCTCGGTCGGCATCCTGCTCTCGAGGGAATGGAGTCCTGGAGC
GAACTACTCATTGCTGTCTTGCCCAAGGAAGGGCATTTGGAACATTCTTTTTAGGGAGGGAAAAC
GTGGTTGACAAGCCACTTCGAGGAGGCGACTGGAGTGCTTTCATCAAATAATGCATGTGGGCTGA
GCCATTCCCATCCCGACGTGGTGGCCCGATTCGGCCTGGCCTGGTCGGGAAGAGATTCACATAGA
GACAGACTACTGTTATCTGGGAATATCTTTCTATGTTAGCTAGCGGGGGCGGGCTTTGCTTTCCT
ATGGTAGTCCCGCGGCGGCCTCTGACCGTCCGTCCCGTCTCATCTTGATTTGGCTATACTTGTAT
GTAGCCAGCCATGTTAGCTTCACATGAGAGCCTTTATAAAAAATA
Right flanking sequence: Indices 185573 -- 186072
ACTCATCAGTCGGCCCCTTTCCTATTCAGCCTTGCCACCTCTCCAGTTAAGAGAATAGGTCCCGC
GGCCGCCCGCCTGAATCTATACTAGCTGCCACGCACGACCCGAACGATTTCAGCGCCCCTCTCCA
GATAAGAAGCAAAGCGTGCCATCACCTACAGCCCTTTCCTCTGCCGGGGACTTCCATGAAATGAA
AACGGGCGGCATCGTCGTATGCTCGACATTTGTTGCCCTGGTTTATACCCCGGAGTACTCCTATG
GCCGATCTGTCACCCAACCTCCTTAAACAACCTAAAGGCTTGGCCCCGTTCCGTTTGGAGTTGGA
GAATGGGCCTTATGGCACGGCTTAGTCAGTTATTCTCGCAGATAAGATTCGGACCGCCACTTCTC
TGAAAGCATGGTTTTTGCCTCCCTCCTTGGAGTTCGTCCATTCGTTGGGCGATCCCTTGCTCTCA
CGTTCGAGTGTTTGCTCGTCGTTTAGGCCGGTGAGTGAGATTTCT
Found at i:251464 original size:28 final size:28
Alignment explanation
Indices: 251424--251481 Score: 116
Period size: 28 Copynumber: 2.1 Consensus size: 28
251414 AACTTTTCAA
251424 TATAAAGAAAGACCTTGTACATCTGTCC
1 TATAAAGAAAGACCTTGTACATCTGTCC
251452 TATAAAGAAAGACCTTGTACATCTGTCC
1 TATAAAGAAAGACCTTGTACATCTGTCC
251480 TA
1 TA
251482 ACTTTGATAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.36, C:0.21, G:0.14, T:0.29
Consensus pattern (28 bp):
TATAAAGAAAGACCTTGTACATCTGTCC
Left flanking sequence: Indices 250924 -- 251423
AGTGGGATAGCTGAAAGCTTTTGATATGGATCTTAAGTAAGCACAAACCTGTGATAAAGGTAGTT
TCCCCCTCTTGGCATTGTAGGAGTCATTCCAGTAGTTTCATTCCAAGCATAAAAAGTACCCGCAT
TGAATTCGCCTTCGTGGCAGTCTCTTAGGCGTCAGATTTTAGGCAAGCAGAAGGATCAGATAAGA
CATAGATTTATTTTAGTGGGAGTTATCCATCTAGGTCAAGCGCTAATATATACATTGATTTCCTT
TAGAGTTGAGAGTAAAATAGCTAGAAGAAGGCTAGGAAGGTGGAAGAGAAATTACCTATAATAAG
AAAGAGAATCCAATTTTCTAATATGAATTTGAATGGATTCTCCACTAACTGGAAAACCTGCCAAT
CCACTCTTCCTTTTTGGTCTGCCACTACTGTCTTACTGAAGCTGGCTTGCCTTGCGTAGATCAAA
AACTTTTCAAACTCTTTTGGTCGGCTTACTAATAGAACTTTTCAA
Right flanking sequence: Indices 251482 -- 251981
ACTTTGATAACACTGGAATACATACTTTACTTCCGCGGGTATTGGCTTTCGGGCTTGATGAGCTC
CACCTTAAAGAGAAAAAAAATGGGCCTACTGCATGGGTTAATGTTGATAGGATCTGGGAGATTGG
AAAAGACATCCCGGTAAATGTATTTCTTTTAATAAAGGAAAGCTTCCACGTCACATCCGATAGTC
TGATTGGACTTCTGCTGGAACTGGCTGGTCACACTCGGTAAGACTTTTTTTATCCTGTAAGACTG
GCTTTTAATAGAACCCCTAACATCTCTAAGAAAGCATCGACCCTCGCTGATGCTCGTACATACTT
TGATTTCCGACTAAATAAAAGAGGCTTTCTTTGCAGCATCCGTCTTGCAAGCAACCTATCCCCCT
ATATTAGATTAATCGGGTTACAAAAACTCTAACGGATATAGAGCCAACGGACGCTATGGATTTGT
TGTACCATTTTACGTGCTTGAACTCAGAACACACGCCATCCGATC
Found at i:256012 original size:22 final size:22
Alignment explanation
Indices: 255987--256031 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
255977 TAAATAGGCC
255987 TTTCTTCCCTCTCTATAGCCTA
1 TTTCTTCCCTCTCTATAGCCTA
256009 TTTCTTCCCTCTCTATAGCCTA
1 TTTCTTCCCTCTCTATAGCCTA
256031 T
1 T
256032 AGGTTTTGAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.13, C:0.36, G:0.04, T:0.47
Consensus pattern (22 bp):
TTTCTTCCCTCTCTATAGCCTA
Left flanking sequence: Indices 255487 -- 255986
GGATAAACCGATGGAACATAGTAGTGAATTTCTCTCTCCCGATCCGGTTTCGGTTAAGTAATCTG
TCTATCCATCAGGTTAGGTTTCGACCTAAGCATGTAAGGGCTTTCTAGTAGGGTAACCAAACCAT
GCCTCGCAGCATTGATTTCTTCTTTTCATTCTCAGAACAATCTCCAGAAAGACTTAACGCCAACC
AAATAGGAAGCTTCATCCAATCCTCACCTTCGGAACGGGCTCGAGAGCTTCAATCAGACTTAGGG
AGCGGGGAAAGTAGCAGAAGGGCGGTCGGAGCAAAACAACTTCTTTGCGGAAAGCGATGTCATTA
TCTTCCGGTAAGAGTTCAAGCGGTAGTTCGAGCTAAAGCACTCTTCTTGGCTTTCAATTCACTTC
CGTTGTTGTACCATTCCATCTCTTTGTCATCGCATATAGAATTCCTTTTTCCTGTTTCGACAGGT
CTAGTGTGGGAGCTGTTACCCCTTATTCCTTTTCCTAAATAGGCC
Right flanking sequence: Indices 256032 -- 256531
AGGTTTTGAGGTTTTGACCTTCATGGGAGAGGTTTCCTTTGTCATAGGTGGCGGAGGGTTTCGCT
TTTTATTTTTATATTTTTATATACGAAAAAGTGGCGCAGTGAAAACTCAAAACAAAATCAAGAGA
GCATAGAATTTATACAAAATTGGCTTTTTAGGAAAGTTACGGAGATTCAAAGGTTATTACTTCAT
TCTTCTTTTTCTTTCTCCCAGATCTTTCTTTTTTTCCTAAGACAAACAGAAATATCAGAAAGATG
CGCCAAATCACACAACCATATAAGGAAGTTTTTTTTTGTAATGGAAGCTCTCTCCTTGCTTTTGA
ATGCCATGAATCGATTTTTGACTTATTCTCATGGCTTTCGCAAAGTCAAGTTTCTTGCTTTAGTT
TTCAATAAGGGGCAACAAGCAACGGATTGAGCTGCGCGAAAGCCGTTGCGCGTTAGCGCATCCGT
TTTCTTGCTCGTTAGCGCTTTACTATTTACTAATAAGATAGAAAG
Found at i:296298 original size:4 final size:4
Alignment explanation
Indices: 296291--296316 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
296281 AGTAAGTAGC
296291 CTTT CTTT CTTT CTTT CTTT CTTT CT
1 CTTT CTTT CTTT CTTT CTTT CTTT CT
296317 CGCCAAAGAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.00, C:0.27, G:0.00, T:0.73
Consensus pattern (4 bp):
CTTT
Left flanking sequence: Indices 295791 -- 296290
CAGCAATAAGTTGCTGTAATAAATCACTCAGTACTGGAAGGGATGGAGATAGAAAAGCTGGGCTA
GTTCCATTCTGATGTTGAGGAGACTCGCTCGAATGGCCTTAAGTAGTTGCAACATTTGCGAAGGA
TTCAACAGCCTGCCTACTGTACCGCTAAGCCCTGCCTATTAATGCCATAGTTTCGGGGCAAGCTA
TGTGGTTCTACAGCAACCTTATTGTTCCTAAAGCGAAGCAGCAAAGAAAGTAGTAGCCGCTCGCT
ATGTGTGATTCGATGTTAAGACCCCTAAAGCAAGCTATAGCTATTGAATTGTTCCTAACCAGAGA
GATCTAGATTACGTTCATCTCATAAAGATCTTCCTTTTCACTCCTAAATAATAAACTAAACGACA
ATAACATAACTCCTAACGCAAAAGAGTAGCCGCTGCGATGCCTATGCTATTTTCTTTCCTATAGA
GCTTGGGCCCACGCGCAAGCTCCTAGCGCAAAGCTAGTAAGTAGC
Right flanking sequence: Indices 296317 -- 296816
CGCCAAAGAGGAAATTTCTGATGATTGGAAGGTTTCCGCTAGTTAACAAGGTGGGTAAGGCGGAA
AAAGAAGGGCAAAATGGTCCCCGAAATCGATTCCGACACCCCTCTTGCTCAGTTGTTTGAAACGC
AATCTCGGCGAACGAGAGCAAGGGCGAGGTTGGAAAAAAAGCCAAGGATTTTCAGTGTCACGAGC
AACATCGGTTGTCATATATGACAATCCCGGAGGCCAAACAGAACCCGGTGATGACCCGTCTTCCG
ATGAGTCCGAAGACTTGGCACGTACCGTCTCATCAGAAGTATCAAGAACAGAACACGTCTTTGTA
ACCTCGAAATCTCCCCTAAAGAAGCCATAACTTAACAAAAGTACCGAAGGCTAGAGTAAGGGGGG
GCTTAGTCTCGTTCCCATAGTTGCCCCCCAGAAACTGGATTTAGGAATTTTCCACCTAAGCGCCC
TGAAGAGCAGTGGCTCAGTTGCAGCGCACCAACTAAGAGATACAC
Found at i:298999 original size:25 final size:25
Alignment explanation
Indices: 298954--299001 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
298944 GAAGCGAGAC
*
298954 TCGACTGTTAAGGACCCAGAGGGGA
1 TCGACTGTTAAGGACACAGAGGGGA
* *
298979 TCGACTGTTAAGGAGAGAGAGGG
1 TCGACTGTTAAGGACACAGAGGG
299002 AAGCACAAGG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.29, C:0.15, G:0.40, T:0.17
Consensus pattern (25 bp):
TCGACTGTTAAGGACACAGAGGGGA
Left flanking sequence: Indices 298454 -- 298953
CGCATTCGCTGCATCTGAAGGGACGATTTCAGATAGGTAGGTTGGGTTGCTCGTTGTGGTTGCCC
GGACCTCGATCTAGATCCAAGATAAACCAAAAGCATGGGTCGTGGTCGGCAGATATATATGATTC
TGCCGGGGCTTGGGCTTGACTTCTTTCTTCATGAATGATTTTGGAGAAGCCTGCCTCGAGAGAGA
CATATGGCATATCTGACTGCCTGATTGGCGAGCAGCTGTCCTCATTCATAAGTCCAAAGAACTAG
CAACCAAACTGGTCGCAAGCAGGAGAGTGACCAGGCCTGATACTGATTGAAACGTTTATTTAATT
GGAAGCCGTTCAGATAGCCCTAATTAGTTTTAATTAGTTTAGTCAATGTTGAGCTGTCATATCTA
GCTGCCATATATGTAAACATGCCCTAAAAGTAAAGGGATCATATTTCCTTTAGTAACCACTTTTA
CCCATCCGCTCTTCTCCTGACCGATTGGAGGAAGAGAAGCGAGAC
Right flanking sequence: Indices 299002 -- 299501
AAGCACAAGGTTGGTGACCCGGGGGAAAGCGAATGCAGATCTCACGCAAAGTGAAATCTCAAGAT
TCAGATTGGGTTTGTGTTCGGTGTGGAGTAGATAGGGCTATTCCTTAGCAAGGCTATTCAGTAAA
GGCGAGAAGGGATCTATAGCAAGGGCAGCCCGGGTCTACCCGCAGAGTTGAGGAAGATAGATCAA
ACAGCCTTAGCGCTTTAGCTTGAACTGTAACCTTACCCTCGCTACTGACCTGTCGCTTGGCCCGA
AAGACTGGAACTAGAAGTCAACTGTGCCTAGACCTCAATCAATACGCTTACTGAGAGTACCGGTA
CCAGAACAAGAACAAGGATTTCTCTTTGGTCAAAGCCGCCGCACTTGAACCGTAACCAGCTAATG
CATCGCCTTCTATCTGCATTTCTAAGACCAGTCCCTTATTCTGCTAACCAATTAGGTTGGTTCAT
CAGGTGCCAAGGCATCTCTTTCTCCCAGGTCCCATCTCGAACATT
Found at i:300863 original size:22 final size:22
Alignment explanation
Indices: 300837--300881 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
300827 TAGTGGAGCC
300837 TTCGTGTACCAATTTCAGTGGT
1 TTCGTGTACCAATTTCAGTGGT
300859 TTCGTGTACCAATTTCAGTGGT
1 TTCGTGTACCAATTTCAGTGGT
300881 T
1 T
300882 GAGTTTCGCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.18, C:0.18, G:0.22, T:0.42
Consensus pattern (22 bp):
TTCGTGTACCAATTTCAGTGGT
Left flanking sequence: Indices 300337 -- 300836
AATCACTCCGTTGGGACGGGAACATGTATCCCTCCCAACCAAAAATCTTTTTGTCTAAATCAGCT
TTCGGCCTATCGATTTAACCGGGAGCTGCTGTTGAGCACTCTCACCGGATTCCCTATGCGCTGAT
TGATGCTTCCTCTCCGACTCGATGAGACCACACTACTGAGTGAGCTTCTTTCTGGCGCTCTTCCT
AGGATTCCTAATGCCTCTTGCTTCAACACAGAATAAGGTCTTTTCTCGGCCACTTTGTCATGAAA
TGAAAGCACAGTGAGTGAGTCTTCTTTCCGAGTCGAGTACTAGGCAGTCAATGTAGAGTTCACTT
CATTTGTCAGACTCCCGGTACCGAAGCAAAGTACTCATCCGAAAAGACGGTTTGATCATGCCCTT
TGTCCTCAACCCATGGTTCTCCTATATCTCCTAACTTTCGCTTTGCTTTCTCTTGAGCCCGCATT
TCGTGTTTTTTAAGATATTAAGAGGTGAACCCGCATAGTGGAGCC
Right flanking sequence: Indices 300882 -- 301381
GAGTTTCGCACTCCCGTCATCTTCCTCTTCTTTTTGGAAAATCCCAAATAGTCATCAGAAACAAG
CTAGCCGAGCATTGATTTGGGTGTGGGTGGGGTATGGTGCCCCAACGGATGGATCTCCATCAACA
TGGGATTTTTCCGAGGGGATCAATGTCTGGTCGAACCAAGCTTCCTTCTCTCTCTCTTGCTTCCC
CACCTGTGACTGAAGCTTCCACATGAACTTGACTTTCCTATCTGAGTAGACCGAAAGTTCTACTT
TTTGGGAGGGACATTAAAAAGGTAGCTTTCTCCCTGGTCGATCAGTCGTTCAATCCTTTCCTCTT
GATCAAATGCATTTCTAAAAGATTCTCACAACACAATGGACTCCAATACTGAACTGAGACGGACC
CAGACCCCCTACCGAAAGGGCTCTGTACCTATATGTTCTTTATCTCAAGCGATAGCTTTCAAGTG
CCCGACCCTCTTCCCTTGATCAATGAGTGAGAAAGCAATAGCCAG
Found at i:332782 original size:14 final size:14
Alignment explanation
Indices: 332763--332791 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
332753 GGCTTACTGT
332763 TTAGGTAGGATAGA
1 TTAGGTAGGATAGA
332777 TTAGGTAGGATAGA
1 TTAGGTAGGATAGA
332791 T
1 T
332792 GGATGTAGTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.34, C:0.00, G:0.34, T:0.31
Consensus pattern (14 bp):
TTAGGTAGGATAGA
Left flanking sequence: Indices 332263 -- 332762
GCAAGGACCCGCAACTCTCGAAGGGGCCACCCACCGCCCGATGTAGCGATGTAGCAAATCCTCCC
TTTACTCAATGTACCGCGCTTAGCCTCTTTCAATCAAGGGAAAAAAAAAGAGTGACGAACCCGGT
CATAGGTTGGTCCAAAGAACGAGAGTCGGCTTCCTTAAGGGAGTTCTTCCTCAGTAGCTCAGTGG
TAGAGCGGTCGGCTGTTAACTGACTGGTCGTAGGTTCAAATCCTACTTGGGGAGAATTTTGAGTT
ATCGCTTTTCTGACGCCTGTTTTTCTCTTTAGTTTCTAAACTAGCAGAATCGTGGGACATCAAAA
GTGGGAAGTTGATTGTAGGGTTTTATTCTTCACTCTCGTATAGGTGAACTTGGTTCGTTCAATTC
TTAGGGAAAAGGAAGGATCCACTGTGAATGAATGGGAAGACTGGAGTAGTATCTTCATTAGCCGG
AAGGACTCCACTAGCTCGAAGAACGAACAAGAAAAGGCTTACTGT
Right flanking sequence: Indices 332792 -- 333291
GGATGTAGTCCAATGGCTAAAGCTCTGCCAGCTTCTTGTAGACTGAACTCTCTTCTCTTTAGGTT
CCGAGTTGCTTTTTTTGGGGTAAGATTTTTCTTCGCCACTAGTACCAACGAAGTTCTTGGTTATT
TGAAAGGAGGAAGGAAGATCTCCACTCATTTCATTCATTCAGTGCCTACGGCGAGGCGCGACCCA
CAACAAACAAAGGCAACTTCGTTGCTTGCTGTAGCCCTCTTTTAGTAGACTAGGCTGAGTAAGCG
TAAGCTATTTAAGTAGGCAGGGTAGGCTCGCAGCTTCGCCAGAAGCGACTAGTCGCCTCCTTTCC
TCCGCCGAAAGATGCTTAGCCAGAAGCGACGAAGGGGGGGCGTCGGGAAGGCCGACGACTACATG
ACATGAGGGAGAAGCTGTCGTAGAAGCTTTGCCCCTTGCTTTACAGAGATTGTTATGAACTGACT
AAATGACTAGATTCTCCCGGCTAAGCTAATAAATAGTATTTGTTC
Found at i:344972 original size:7 final size:7
Alignment explanation
Indices: 344960--344987 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
344950 AATGAGGACA
344960 CTTATAT
1 CTTATAT
344967 CTTATAT
1 CTTATAT
344974 CTTATAT
1 CTTATAT
344981 CTTATAT
1 CTTATAT
344988 ATAGGATATA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.29, C:0.14, G:0.00, T:0.57
Consensus pattern (7 bp):
CTTATAT
Left flanking sequence: Indices 344460 -- 344959
CGTCGGTGAATGCTTTCTTGCCAACATGCCCTCCTTTTAGACATAGATCTATCATTACCGACTAA
GGAAGGGCAAACGTGGAAGATTTCCAATCATTTTGACAATGTCGTACCTTCCTTCTCGTTTGATC
CCTGGTACTTTCTATTTACTATTCCTCTTGAAAGCACTGTGGAATTAGACAAAGTCTTTCACCAA
GCTGACTGAATGTCGTACCCTTTGCTACTTAGATTTTCCTGCGAGTTCGATTTCTTCTTACTTAG
TAGAATGGCAACCCTTGGAGTTCGATCCAAACAAAAGCAGAATGCCGGAAAGCAAATCCAATTCA
ATCTTGACTTCCTTTTAACTTCTAGGCTTTTACCCGAGTTGCAGAGAAGAAAGAGATGAGATTGA
CCAAATCGGAATGCGCACCTTCTCTCATGCCCCTCCAATGCCTCAGTTTAGGCTATGACTGATTG
ATGAGCCTTCTATCTCCTTCGGTCAAGCAAGGCTGAATGAGGACA
Right flanking sequence: Indices 344988 -- 345487
ATAGGATATAGGCTTTCTGCCTTCGCTAACAGAAGAGAAGAAGAAAGGTTTTAGCATAGAATGAG
AGAAGGAAAAATAGCATTACTTACTTTTCTCCCATGCTTTGACAAGTGAGTGTGGGATGAGGGTG
CTCACTAATAATATAAAAGAAGAAAACGAAAGGGCAAGTTTCAATTACGAGAACGAACATTAATG
GATTACTTTGTCTCCATTGCTGGGAATTTCAATTGAATCTCCTTCCATACTTCACAAGCAGCCGC
TAGAAAAGGACTCTATTTGCTAGCCTCACATCCCTCATTACGAGCTTCTGGAGCTACTCGATTAG
CGACGGAACCGGGTGCCCTAAACTTCCTCCACCGAATTCTAGTACGGAAGAATCTCGGTCAGAGC
GGGCATATGCCAAAGGTGAATACCCCTGAAGCTACGGGTAGAGAGAGCCAATCTTGAGTGAAATA
CCGCGGCTCCTGCTTTCTCAGGTTGAGGAGTGAGTCGGAATGCTG
Found at i:350363 original size:18 final size:18
Alignment explanation
Indices: 350340--350376 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
350330 ATTTAACAAC
350340 AACATTATAAGAAAAGAT
1 AACATTATAAGAAAAGAT
350358 AACATTATAAGAAAAGAT
1 AACATTATAAGAAAAGAT
350376 A
1 A
350377 TTAATAGATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.62, C:0.05, G:0.11, T:0.22
Consensus pattern (18 bp):
AACATTATAAGAAAAGAT
Left flanking sequence: Indices 349840 -- 350339
TAACGCAATTCCGGGAGGAGTCGGTAATTGGGCACTGGATCCCTTCGGACCTGGAAAACGTGTAA
CGCTGGGTCGGGGTTTGGTGAACCAACTGGTCGCTCTTCTAGTTGAAGTATCGGGCCCCTTTTTC
GTTGTCTAGGTTACACCTTCGGAATACCCCAGAAAGGGAATTCTTCTCTACTTCCCGTGATCTTC
ACTTTACGCCACACCGACTCCCTTTTCGAAACGTCATAAGGCGTGGAATTAGACCAAGGGGAATC
TCCATAGGAACTAGTCCCTCAGATTTCGCACGTAGGAGATCGAGACACAGCCCCAGGGCTATGGG
GAAAGATGTAGATCGATCGCCCTAGATAGACAACTACATAGAGGGTCTCTACAAGTCTATATATT
CTTAGATTTCGTTCCCCCCGTGACGATCAATATCACAACCAATGAGGTCTGCAAGTTTCACATCT
AAGTAATACCCGATCCGGTAGTTTACGATATAGATATTTAACAAC
Right flanking sequence: Indices 350377 -- 350876
TTAATAGATATCGGTAGTTGTCCGGTCGTACCCAAACAATAAGATTCCAGAGGGAAATGCACCTA
AGATCAAATATTTCGAGCCGGCTTCCGTGGAAAATTCAGACTTTCTTTTTGATGCTGCGATCACA
TAAAAACATAAACTTTGAGGCTCAATAGCTAAATACATGGCAATTGAATCATGAGCCGAGATCAT
AAAGAGCATACTGCGAGTAGGAAGTAGAATTAATACAATGAATTCAAAAGCATCAAACCTCTCTT
GTTCGGAAGAATCGAAACACATCGAAATGGTACCAGCCGTACTTAATAATAGAAGGATTTGGCAG
AAATATGTAAAATTGTCCCTCCTAAAAAAATGATTCCAGAATAAATGGGCAATAGTTAGGAGAGG
TGCGCCAGCGGCGAGCAGAAGCAAGGTTATTAGATACCTCAGGAAAGCCCGGCCAGAACCACACG
TGCAAGTTTCCCTGCATGTGGCTCGTCCGTGATAACTTCTTCGGA
Found at i:436446 original size:24 final size:24
Alignment explanation
Indices: 436419--436466 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
436409 AACTTGCAAA
*
436419 CATAACCAGGCAGTGAGGTATCTT
1 CATAACCAGGCAGTGAGGAATCTT
* *
436443 CATACCCAGGCGGTGAGGAATCTT
1 CATAACCAGGCAGTGAGGAATCTT
436467 AAGGGGAGGG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (24 bp):
CATAACCAGGCAGTGAGGAATCTT
Left flanking sequence: Indices 435919 -- 436418
GGCCAAATCAGGTCTTGTAATATACTGCAGGGCTCCAACGATGCTTCTGTACAGAGATGGATTAT
GAAATGGAGTAGAAGAGACTGCAGCAGAGGACTGATTTTAAAGTTAATTGGAGAAGAGCAGGGCT
TACAATTCAGCATAGCAGCTCTCTGGAGGAGATCCAACGCATATTTTTGCTGTGTTAAAAAAAGT
CCACGATCATTCTTGTCTTGAGTACCTCAATGCCAAGAAAATAGTTCAAGTTCCCGAGGTTCTTT
ATAGCGGAGCACTTAATTCAGTGATTAGAGTGGAGATATAAGAGGTATCACTGCCAGTTATAATA
ATATCATCCACATAAACCGCAAGAATTGTAGTTCGCAAACTGTTAGTTTGAATAAATAACGAGGA
ATCACTACGGCTCATAAGAAAGCCTTTACTGATTAAAAAGCTATAAAACTTATCATACCAAGCGC
GTGATGCCTGTTTAAGACCATACAATGCTTTCTGCAACTTGCAAA
Right flanking sequence: Indices 436467 -- 436966
AAGGGGAGGGGTTGGTAGTGAAGGGAAGTCCAGGGCTGTGTCTGATCAGCTTACTGGGAGAATTC
CAGGCGAGGGAGTATTGGTAAGGTTATGGAGGAAAGAGGAAATAGGATTTTGGGCATCTCTCGTT
GCTTCGGATGTTTATGAGAAAGAAGCTTCTCACAGATATTGACTTTTAGATAGATACCAGCATCG
TATCTTAATTAGCAGTTTCTTGAACTTGGTTGCACTCGTAAAGCAGCTTAAGAGAGCAACGAAAG
ACGGAGCGGTGATATTTCATGACTAGCAAGTGGAGGATCATTCCAGGCTCTAATTCAGTCTCTGA
TGGCGTAGCTGATGTGTCATGCTAGGAAGCTGAGCTAGGGCATTTCTTCTTTCGGTTTAAGTGTT
GTGAAAACCCTCCTCTCCGCTTCTGGCAGCATAGAAGGAAGCTTGGGGGAAAGGTCTAAGTGCAA
GCATTGAGTCAAACTGATTCAGGTATAGCAATGTAGTTCTTGTCT
Found at i:474752 original size:13 final size:13
Alignment explanation
Indices: 474730--474764 Score: 54
Period size: 13 Copynumber: 2.8 Consensus size: 13
474720 ATCAGACAAT
474730 AATAAGAATAATA
1 AATAAGAATAATA
*
474743 AATAATAATAATA
1 AATAAGAATAATA
474756 AA-AAGAATA
1 AATAAGAATA
474765 TTCATGAGGA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
12 6 0.30
13 14 0.70
ACGTcount: A:0.71, C:0.00, G:0.06, T:0.23
Consensus pattern (13 bp):
AATAAGAATAATA
Left flanking sequence: Indices 474230 -- 474729
ATCACAGATTCAGACAATGAGTAAATACTAAACCCGCAAAAGGAAGCCTGCCCTATGATTACCAA
CCTCCGTAGTCTTTGTTGGGAACGTCAAGATAGGAATAAGGAAGCACCAAAAGGACCCCAGGTTG
CTCTGTTCACCCAAGCAATACGTCATCAAGGTGTAAATAGAGTCAGCTCACTTTCAAGCAAATCA
ACAAAATAACTTATAGTAAAAGGAAACCAGATAAACATGACAATAGTCTTTCGACGCAAAATTCA
CATAGATAAGAGCAAGAGAACAAGATTCACAATATTTCAAGAGAACCCACACAAAAAAGGGAACG
GGATACCGTTATATTGGGTCAAGGTTTGCACACTCCAACTCCCACTCTCAATGCCTTTATTTAGG
TCAAGCTCCAACAGGTAGATTACACTAAAAGAAATCCACTCAGACTAACAACCTTTTTCACTTAT
TTCTTTTGAGAAAGACATTTTCATATACTGGTTCAATCAGACAAT
Right flanking sequence: Indices 474765 -- 475264
TTCATGAGGATGTTGAAGATTTATTCACATCTTTATTAGAGCAAGGGTTGATCGAGCTTCCCGAA
CCTAAGAGACCGGATGAGGTGGGACGAGTAGGAGATCCCAAATACTGTAATTCCATCGGGTTATT
TGTCATCCGATAGATTATTGTTGAGTTCTTAAAGTGAAAAAAGTTTGAAAATGATGGTGTCATTG
AAATAGACCCTCCTAAGCAACCTGTGGTCACTTCAAATGCTTGTAATAGTTGGAGATATTCTTTG
CCCGATAGCTGAGATCTCGCCAAGCATAGCCTATATCTAGATCTAGTTCTAGCACCGGAAGAGCA
ATTTCAGAGGATCTCACAAAATATGATGAAAGATATATTCAAGGAGAATGGAGCACTCGTGTTAG
CCAAAGGAGTAGGGAAGTCTGGTTTGGGCAACTCCTTATACTGAGACTTGCAAGAGCCGGTGGAA
AAAAATCCTTATGATCCGGTAGAAGCTGGAGCTGTGGAAAATCAA
Done.