Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_068760
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 647460
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.28
Found at i:47752 original size:28 final size:28
Alignment explanation
Indices: 47712--47769 Score: 116
Period size: 28 Copynumber: 2.1 Consensus size: 28
47702 AACTTTTCAA
47712 TATAAAGAAAGACCTTGTACATCTGTCC
1 TATAAAGAAAGACCTTGTACATCTGTCC
47740 TATAAAGAAAGACCTTGTACATCTGTCC
1 TATAAAGAAAGACCTTGTACATCTGTCC
47768 TA
1 TA
47770 ACTTTGATAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.36, C:0.21, G:0.14, T:0.29
Consensus pattern (28 bp):
TATAAAGAAAGACCTTGTACATCTGTCC
Left flanking sequence: Indices 47212 -- 47711
AGGTAAGCAAGTGGGATAGCTGAAAGCTTTTGATATGGATCTTAAGTAAGCACAAACCTGTGATA
AAGGTAGTTTCCCCCTCTTGGCATTGTAGGAGTCATTCCAGTAGTTTCATTCCAAGCATAAAAAG
TACCCGCATTGAATTCGCCTTCGTGGCAGTCTCTTAGGCGTCAGATTTTAGGCAAGCAGAAGGAT
CAGATAAGACATAGATTTATTTTAGTGGGAGTTATCCATCTAGGTCAAGCGCTAATATATACATT
GATTTCCTTTAGAGTTGAGAGTAAAATAGCTAGAAGAAGGCTAGGAAGGTGGAAGAGAAATTACC
TATAATAAGAAAGAGAATCCAATTTTCTAATATGAATTTGAATGGATTCTCCACTAACTGGAAAA
CCTGCCAATCCACTCTTCCTTTTTGGTCTGCCACTACTGTCTTACTGAAGCTGGCTTGCCTTGCG
TAGATCAAAAACTTTTCAAACTGGCTTACTAATAGAACTTTTCAA
Right flanking sequence: Indices 47770 -- 48269
ACTTTGATAACACTGGAATACATACTTTACTTCCGCGGGTATTGGCTTTCGGGCTTGATGAGCTC
CACCTTAAAGAGAAAAAAAATGGGCCTACTGCATGGGTTAATGTTGATAGGATCTGGGAGATTGG
AAAAGACATCCCGGTAAATGTATTTCTTTTAATAAAGGAAAGCTTCCACGTCACATCCGATAGTC
TGATTGGACTTCTGCTGGAACTGGCTGGTCACACTCGGTAAGACTTTTTTTATCCTGTAAGACTG
GCTTTTAATAGAACCCCTAACATCTCTAAGAAAGCATCGACCCTCGCTGATGCTCGTACATACTT
TGATTTCCGACTAAATAAAAGAGGCTTTCTTTGCAGCATCCGTCTTGCAAGCAACCTATCCCCCT
ATATTAGATTAATCGGGTTACAAAAACTCTAACGGATATAGAGCCAACGGACGCTATGGATTTGT
TGTACCATTTTACGTGCTTGAACTCAGAACACACGCCATCCGATC
Found at i:83825 original size:19 final size:19
Alignment explanation
Indices: 83790--83828 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
83780 GAGCAAGCCC
*
83790 AAACAGAAGCAACAAGAAA
1 AAACAGAAGCAAAAAGAAA
83809 AAACA-AAGCAAGAAAGAAA
1 AAACAGAAGCAA-AAAGAAA
83828 A
1 A
83829 CAGCTCTTTG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 6 0.33
19 12 0.67
ACGTcount: A:0.72, C:0.13, G:0.15, T:0.00
Consensus pattern (19 bp):
AAACAGAAGCAAAAAGAAA
Left flanking sequence: Indices 83290 -- 83789
TGATCTTCACTGGTCGGAGGCTAAGAGCTTTCTTTGACTCTGAGTCATATGGGATGGGTCCCTAC
TCTCACTATGACATAGTGGCCCAACGGTTCCTATGAAAGTCATAGCCGGACCTACTCTCCTCTCG
CCGATGGTTTGAGAGTTGCGTTGGCGTGACGCTAATCTACTGATATTCGAGTGCTTGAGTTTCAC
TCATGTAGAGATAACGAAGGGAAAGGGCATTTGAGGGAGAGCCCAACCCAAGGGAAGGGGCAAAG
AAAGGACCTGAGCACATTGACATCGAAGAAAAGGCCAATGAAAATAGGGAAAGTCCTATTCAAGC
CGCTTTACCGACGAGGTTAAAGAGCGGTAGCCCCTCCTTCGAGCAAGCAAGCGGCACTAAAAGCA
GGATGAAAGCAAGCAAGGAGTGTAAGCCACTTGCCCGATAGGGTAAGGAGCGGAGACCCTTCCTT
CATTCATTAAGTTTAGGGAGTCAGGGATAACAGAGGAGCAAGCCC
Right flanking sequence: Indices 83829 -- 84328
CAGCTCTTTGTCTTACTGTGCCCGAGGAAGGGAAGAAAGAAGATGACAGACAAAGCACAACGGAG
GAATGAACTTCAAGCATGGAGGGGGAAAGTAACGGCACTCAAAGCTGTCTTCCATCAACCAAGCA
TGAAACAGAAGCCATGGACTAAGATGACTGGACAGGAGCGATAAGCAGCTATCAGCCACTCGAAC
CAAGTTAGAGGTTTTTTTCATGAGAGTCTTTCTAACATTCTTCACCTGAACCCGGGAACAGCTTT
GACTTAGATACTCTATTGTCAGATAGTTGAATGGCACCGGGAATGGATTAGGGAGCAAAGGAGAT
TAGGGAAAGTCGAAAGCCCTTTTTCCAACTGAGAGGGGCAGGAGAAGGATAGAAAGGTAGTTTCC
TCCAGCAAGAGGGATGACTTCTTCCTTTCCGCAAATAACAAGCGCTTTTCTTCGCCACATCGCGT
ATAACGGGAATCGAACCCCCCTGCTGCTGGCGGGCGGATGGAGAA
Found at i:87662 original size:13 final size:13
Alignment explanation
Indices: 87644--87669 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
87634 AAGGAGTTTT
87644 CTCGTATTCTGTA
1 CTCGTATTCTGTA
87657 CTCGTATTCTGTA
1 CTCGTATTCTGTA
87670 TTAGCTCCTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.23, G:0.15, T:0.46
Consensus pattern (13 bp):
CTCGTATTCTGTA
Left flanking sequence: Indices 87144 -- 87643
ATGCGGCACACATGCTCTGAAGCGTGCTTTTACGCTCGATGATTCCCTCTTCAAGGTGTGTTCAG
TTAGAACGTTAAAAAGAAAGAGAGCGTTCAAGTTCAGGTGGTCGAATGCATTTTTCTGTACTGTA
GCAGGAATGGCTTTCCTGGGCCCTACTTTGTTTATGTATGCGTACGTGTAAACGCATTTACTTTC
TCTGACTCTGAGGGTAAATTGACTTCGGGAGCGGTAACGGATTTTCTCGATACTAAGTTTGCCGG
AAAGCACTTCACGTATAAGAGCTTGGGTCCCCGTATCCTTTGTTTGCCTTTTTACCTTCGGTAGG
AAACCATTATGGAAAGTGATCACACGAAAAGCAAAAAAGCGCTCTTCCTTCCGGCTTCTGGAAAG
ACTTGAGCCGATAGACGAACATTGGTCAATTTCAATTAAAGGTCGGCTACTAATTACAATTGTTG
GATTGAAAGCATCTCTCTTTCCGATTTCGTTTTCGAAGGAGTTTT
Right flanking sequence: Indices 87670 -- 88169
TTAGCTCCTTCCACGAATGAATAAGGTAAGGCTTCGATCTTTCGCTTTTGAGTTCGTCCGGAAGC
TCTAGTATGAGCCGGTGATTCCAGTCCGTCTCGGATGGAACTCCCACCTAAAAGGTCGTCTCTTG
TCGAACATCTCACCCAAGCGCTAGGTAATCCAATTTGGAGCATCGGTACTCGCCAGAGTTACAAG
TCGTTAAGCGACGCGAAAGAGTTGATCCATCGGATTGGGATTAGCCAGTCTTTGAGCTAGCCCTA
ATTGAATCTACCAAATAGGCAAATAGGCTAAAGAAGGGAAGCACCAACCATTCATTTGTCGAATC
GAAAGCTTCGCCTACGACGTAACTCAGCGCGGTAAGCTCCATTTTGCTGGCGCTTGTTTAATTTA
AAGTGGTACGGTATCCCCATACTTTTCTAACTAAGTCAATTGAAAATGACATCGGCTAGTGAGCA
AACGAGCTTCCGAATTGGATCAAAGCCAAGAACCGAGGCGAGGTC
Found at i:127979 original size:14 final size:14
Alignment explanation
Indices: 127962--127990 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
127952 GACTACATCC
127962 ATCTATCCTACCTA
1 ATCTATCCTACCTA
127976 ATCTATCCTACCTA
1 ATCTATCCTACCTA
127990 A
1 A
127991 ACAGTAAGCC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.31, C:0.34, G:0.00, T:0.34
Consensus pattern (14 bp):
ATCTATCCTACCTA
Left flanking sequence: Indices 127462 -- 127961
GAACAAATACTATTTATTAGCTTAGCCGGGAGAATCTAGTCATTTAGTCAGTTCATAACAATCTC
TGTAAAGCAAGGGGCAAAGCTTCTACGACAGCTTCTCCCTCATGTCATGTAGTCGTCGGCCTTCC
CGACGCCCCCCCTTCGTCGCTTCTGGCTAAGCATCTTTCGGCGGAGGAAAGGAGGCGACTAGTCG
CTTCTGGCGAAGCTGCGAGCCTACCCTGCCTACTTAAATAGCTTACGCTTACTCAGCCTAGTCTA
CTAAAAGAGGGCTACAGCAAGCAACGAAGTTGCCTTTGTTTGTTGTGGGTCGCGCCTCGCCGTAG
GCACTGAATGAATGAAATGAGTGGAGATCTTCCTTCCTCCTTTCAAATAACCAAGAACTTCGTTG
GTACTAGTGGCGAAGAAAAATCTTACCCCAAAAAAAGCAACTCGGAACCTAAAGAGAAGAGAGTT
CAGTCTACAAGAAGCTGGCAGAGCTTTAGCCATTGGACTACATCC
Right flanking sequence: Indices 127991 -- 128490
ACAGTAAGCCTTTTCTTGTTCGTTCTTCGAGCTAGTGGAGTCCTTCCGGCTAATGAAGATACTAC
TCCAGTCTTCCCATTCATTCACAGTGGATCCTTCCTTTTCCCTAAGAATTGAACGAACCAAGTTC
ACCTATACGAGAGTGAAGAATAAAACCCTACAATCAACTTCCCACTTTTGATGTCCCACGATTCT
GCTAGTTTAGAAACTAAAGAGAAAAACAGGCGTCAGAAAAGCGATAACTCAAAATTCTCCCCAAG
TAGGATTTGAACCTACGACCAGTCAGTTAACAGCCGACCGCTCTACCACTGAGCTACTGAGGAAG
AACTCCCTTAAGGAAGCCGACTCTCGTTCTTTGGACCAACCTATGACCGGGTTCGTCACTCTTTT
TTTTTCCCTTGATTGAAAGAGGCTAAGCGCGGTACATTGAGTAAAGGGAGGATTTGCTACATCGC
TACATCGGGCGGTGGGTGGCCCCTTCGAGAGTTGCGGGTCCTTGC
Found at i:162549 original size:13 final size:13
Alignment explanation
Indices: 162531--162556 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
162521 TCCTGCGAGC
162531 TTAGTTTATGAAT
1 TTAGTTTATGAAT
162544 TTAGTTTATGAAT
1 TTAGTTTATGAAT
162557 AATGCAGCAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.00, G:0.15, T:0.54
Consensus pattern (13 bp):
TTAGTTTATGAAT
Left flanking sequence: Indices 162031 -- 162530
AAAGAATAGACGGAGACGAGACGTACGATTGAAATCACGTTTATGAAAGCAATGGCTCTTAGCCG
ACTAAGATGACCACATAGTGGTATACTACTTCACGTAATTCACGTAATTTTCCACTTTACCACTA
TCAGACTAGACCGGAGCTTTTGAATAGGGCTTTGAGGATAAAAAGACTAGCCGGAAAGCCATTCC
CCTGCTTGCGACCGCTGGACCACTTGGAATGATGGAAAAGAGAGTACAGAGAGCATTCCATATGG
GGCTTCCCATCGGGGCTACCATTTTATCAGGCCCGATCGAGGTTCTCTTCTTTCCCGTTCATATG
AAAAAGACCTGCAATGCTAATCTCGTTAGGCCACCCGAACCCATCGAACCGGAGTTAGATAGGTG
AAAAGATAACAAGACAACACCTGCCTATATCGCTCCTGTCTAAGCGAGCGAGACTTTTCCATTGA
TATTTCCATATCATGTAGCGAGACTCCACTTTAGATCCTGCGAGC
Right flanking sequence: Indices 162557 -- 163056
AATGCAGCAATCGTAGGGTCGACAGTACCGGTGGGCTTTGAGCTACCAGAGCAAGGAGATAGAGC
TTGAGCTTTTCCTTCATGGACCAAGGCGACTCTCGTTAGCTCTACTTGGGCTTAGTGCGATTCGA
AACTGGGATTTTTCTAGCCCGAAGAACGAACAAAGACAACAAGGAGCGACTGATAAGGAGCGGTT
CAAGCTTTCTGGCCATTCCAACTGCCTCCATTATTCTACTTTTTAAGCGCCATAAGCAGCCAAGC
ATAGTGGTTCGCTCAAGCAATGGAGTTTGCGAAACTTCCGTTCCGGTAGTCCTTAACGCAAGGAA
ATAGTAAGATCAGACCCTCGAATTCGATTACACACAAGCTGCCAAGTAAGCTCTCGAAAGAGCTA
CCTCAGAATGAAAGCTACATCAATCCAAAGGAATTCAATCCGTTATATCTCCACCTCGTAAAGCC
GTAACAGCATCGACTCATTAATGCGCCCTCAAGGGGCAGCCTATG
Found at i:183725 original size:12 final size:12
Alignment explanation
Indices: 183710--183735 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
183700 TTTAATCGAT
183710 GCTTTTGTCAAG
1 GCTTTTGTCAAG
183722 GCTTTTGTCAAG
1 GCTTTTGTCAAG
183734 GC
1 GC
183736 GGCTCCTCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.15, C:0.19, G:0.27, T:0.38
Consensus pattern (12 bp):
GCTTTTGTCAAG
Left flanking sequence: Indices 183210 -- 183709
GAGAGGTCTTTCGGCTTGGACATGACGTTTGCTTGATATTGGGCGGAGTGGGCTTTGTTTGCTGC
TTTGCAGAGACTAGGCTAGGCCACGTGAATTGACCTCACCCATCACATCATCTTGGGAAGCTCCT
CCCTCCTCAACAAGCTCCACCTCCAGAATATCTAGAACCGTTTGGGATTGGACTAGATTGGTTCA
CTCAATATCCTATATAAAGGAGAAAGGGCCAAATCATATATAATGATATAATTGAAATTAAAGTT
ATGGACTCATTTTATAGATATGTTTATGTCTTATCAAGAAGCCCAAAAACTCTTTGATCTCTATA
CTTTAGAAGAGTTGAGGAATTTCCTGGAGCTCTTTCTTTCCATTTCTTTTCTGGTGTAAAACCCT
CCCTATCAATACTTCCTTGCTATTCATTGACAAGAGTTGTAGGGACAAAAATGAGTAATCGAACC
CCTTAGACCCTTTTGCATACTTCGATCTACAAGGCTTTAATCGAT
Right flanking sequence: Indices 183736 -- 184235
GGCTCCTCATATGAAATCCTGAAAAATAGAAATAGCCCATAAAATGACAGCCATCAAAAGGCCTA
AGTCCATATTCTAGCCTCGGTCTGTCCAAATTCAGCGGTCTCTACCCAAGTAGCTCTGGCCCATG
ATCCAAGGGACCTGCAACCAGTTAATCATTCTTTCTTTATTTTCCAACCACTCGGGCAATCATGC
TTGTTTTATCTTCCAACCAATCCCTTTGATTCCGTTTCTGCAGCAGTATATAATCTCGGTCCCTT
ACCTTGATGCCTACAGCTCAATCTTTTTTACAGTGATGGCAATAATATGCGAAATACTGTTTTTT
CTTTTTCTTGGGTTGTTTCTGAATGGCATCATAGCTACACGAGGGAAAGCGATGCTGCCCACTCT
GCCGGGGGCCGCTTTCTTCCCCTCAAAAATGCCAGTTCCACCATCAGGGCCCAGCAAGCAGCATA
ATTCTGTTCCGAGGCTGCGTTTCATTCCAGCACCAGTAGTATATG
Found at i:192378 original size:14 final size:14
Alignment explanation
Indices: 192361--192388 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
192351 GAACCACTAA
192361 CTATAAAGATAAAG
1 CTATAAAGATAAAG
192375 CTATAAAGATAAAG
1 CTATAAAGATAAAG
192389 GAGGTGACTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.57, C:0.07, G:0.14, T:0.21
Consensus pattern (14 bp):
CTATAAAGATAAAG
Left flanking sequence: Indices 191861 -- 192360
AGGAAGAAACTCCATAACATAAGGGGGAAAGCTCCACTCCTACTCCACCTAAGTTGAATCCAGTG
AAGAAGACTGGAACCTGAAAAGGCATCTTTTTCAACACTTTGATTAGTGTAACTACAAACCGCAT
TCTAGCAGCCCTAAAAAAAGAATCTCTAGCGAAGCTGTCAACTCAACCTAAGGAAAGCGATCCGC
TAGTCTAATCTATTCTCTGCTTTCGAGCAGTGAATTCCGGCCAGTCAACTTAGATGTCACTGGAC
TGGGCAAAAGCCCTTCAGTCAGCTTAGATACCGCTCCTGCTGCGTAAGATAATGTTGTAGAGGAG
TTTGTTGTCCTCAACGTTGACCGATTTCAAGAAGAGTCTAATCTAACGGGTCAAATCAAGTCAGT
TTTTCATTGACCTTAGAAGATGATTTCTTTTCCCCGAAATCCAGTACTGTCGAAAAAACAAAATA
AAAATCTAAAAAGAAAATGGAAAGAAACTAAGATAGAACCACTAA
Right flanking sequence: Indices 192389 -- 192888
GAGGTGACTGTAAAGGTCTCCGACCGAGGCTTTCATAGAAAGGAGCTTCGGTGTCACACTGGTCT
GGGCTTGTAGGGGCACCAGAAGCGGGTCTAGAGCCTGCTTCACACCCAAATCTCTTTTTGGACAC
GGACACTCAAATAAATAAAGCGTGCCCAACACCAACGTACAAGACAGATGCCAGGGCAATGAACC
ATAACCCCATTCAATATGGTTCCGACCTGCCTTGAAGCAGGAAGAGGAGCACCCGGGAAGGAGGA
CTAAGGATCTAATCTTCCCCAAGAGGGGAGAATAGGAAAGCAAAGGCTAAGGCAGGGGATCGGAT
TGAGCACTTTCATTCTTCCGGCGGAATCAAAGACATACCTCGATGCCCAGAATAAGGAAATAGAT
TCTTTATCCGCCTTCCTTAATGAAGACGAGGATTTTTAACTACTCGTATCAGCTCAACCAGTTGG
AATATCCCTTGATCTCGTATCCGTTGGTCAAGATTAGGAAAGTTT
Found at i:205462 original size:15 final size:15
Alignment explanation
Indices: 205442--205471 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
205432 AGGTTATAGC
205442 CTTTTATTTTACTTA
1 CTTTTATTTTACTTA
205457 CTTTTATTTTACTTA
1 CTTTTATTTTACTTA
205472 TTCAATTTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.20, C:0.13, G:0.00, T:0.67
Consensus pattern (15 bp):
CTTTTATTTTACTTA
Left flanking sequence: Indices 204942 -- 205441
CTCATAAACCCAATAAAAAAAGTTTCACCCAGGTATACATATCCTTAGCTTGCGCCCTATTTGAG
ACTAAGGCAGGGAACCCTGTCCTATCACCTTTATCAAATCCCTAGCTCTATTCCTTAGTGCAACT
GTCCTATTCCTACCATGGAAATATCTATATTTCTTTTGTTCTATAGTTTCGGATAGAAAAGCGGA
CGGTATCATATATGAAGAAAGAGATTTAAAAGCCATAAGTCGTGCTAGCAACAGTCTTACTGTCT
TGGCTCCTTTGCCCCGGTCTTTTCTTTTTATAAAGTAGCACGTTCCTCTACGAAGGTGCGTTTTA
GGCCACGGTAGCAAGTGTTCTGTAAGGAGCTGTGGGACTAAAAGGCTTATGCTTATCGAGCCCTT
AATTAAGAGGAAGATGTGATTTAGTTTTCCCTGTTTTTCGCAAGTTAATCAGAATCGGCAAGATC
CCCTCTTGTTCTTGCTGCTTGGGAAGAGCAGGAAGAGGTTATAGC
Right flanking sequence: Indices 205472 -- 205971
TTCAATTTAAATCGCAAAAAGATGGATGGGCCAAATTGAACAAATCAATTTGCCTGTGCTATCGG
GCTACTCAGCTTCAAATCCTTCACGCTCCTTGGGATGCCTTACAGTCAGGGAATCACGAAGATGA
AACTAGACTCCTTTTTTGCAGTACCTTCGGTTGAGGTGCATTTATGATTTAATCCAAAGCCTGAG
CCTCTGAACAACCTGATGAATCGCGTTAAATGTGCTTTTCTGGCGTCTTTGAGTTTATGTTATGA
GTTGATCCTAGTTCATAGTAAGTAGAAGGTGTTACGGGTCGGCCTCGGGAATTCGAGGAGCTACT
GACGTTAAGCGTTAAGATTGGACTGCTCTTGGGGGAACAGCTTAGTCCATCTTCAACTCCTAGCA
TGAAAGTGAAAGTCTCAATCCCAGTTCCATATTAAGAAAGTAGACGGACAGAACTCCCCGACCTT
GTTAGGACCCCTTCGGATTGGTCCTCTTCTAGTCGAGTAAGGTGC
Found at i:207085 original size:20 final size:20
Alignment explanation
Indices: 207060--207098 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
207050 AGGTAACTCG
207060 AGAGTA-GAAAGAACTAGAAT
1 AGAGTATGAAAGAAC-AGAAT
*
207080 AGAGTATGACAGAACAGAA
1 AGAGTATGAAAGAACAGAA
207099 CCAGTAGCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 10 0.59
21 7 0.41
ACGTcount: A:0.54, C:0.08, G:0.26, T:0.13
Consensus pattern (20 bp):
AGAGTATGAAAGAACAGAAT
Left flanking sequence: Indices 206560 -- 207059
TCTTCTTTCCCCGTTGTGAAAGGAGTTGGTTCCGTAGTTTTAGAATTCGGCTGATCCCAAGTACT
CCATCTCCATCATTGCATATTTTTATATAGAAAGTAAAGAAGAAAAGGCATAACCAGAAGAATTG
TGTAAAATAAGTGAATTTATCCAGTTGAGGCATGATTGATTTTTTAAAAAGGATTCCCTCCAGAC
AGCTTAACTCCGTCAAGCCTGTACGAGTAAACAATAGATAAGGTTTGCTTGTTGGTTGTTGACCA
ACAGAAAGCATGGGATGCCCCACAACAAATAGATGGGAGCAGGAAATCTTTATCATTCGGCGTAG
TGCAGCTTATATAGAATAGAAGGGGCAAAGCGCTGTTCGTGGCACAGCTTTCTTATATTACGATA
TTTTCATTGATCGTAGCTAATTAGGTGGCAACAACCGAAGAAGCAGAAGAAGTAGCTGCTACCGC
TTCGTGGGCTTCTTCTTTTTCTGAGTCTGCTCGAAAGGTAACTCG
Right flanking sequence: Indices 207099 -- 207598
CCAGTAGCTTTGAGCTTTCACGTGTTTCAGCTCTTGTTCACAATCCAGTTGCTATTGAATCAGCG
TAAGGAGATGCCGATGAGGGTACAAGAAAAGAATGAGCTTTTGTTCAGAGCTTGAATCAGAATAT
CCTTCAGTAACTCCAGGATTCCCCTGGTAGGGCATACAGGACATACCAGGTGAGAAGTTCGGGCG
GAAAGATAGATCGAGTTTACTTTACCCTCTTGATTGACTTTCACTTTAGGACTGAAAGATAGCAA
AGGAAATGGCAGCAGTGCTTTATATATTAGGTCTTCGTTGATCACTTCTGCTTAATTTAAGCACT
TCTCTTTCGAAACCTAGAAAGCGAGAAAGAGAAGAGTCAGTTCTTGTGAACGACTCCGATGCTCT
TTCTATTTAAGAAGATGGAGGAATAAGCGATGCTGCTAAGATCCGCAGTCGATTTAGCTCTTGAG
GGAAGGGAAAGGCGGACTTTAATTTGATGGGCTTTTAGGACTGGC
Found at i:212683 original size:13 final size:13
Alignment explanation
Indices: 212665--212693 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
212655 GGATGAGTAT
212665 AAGAATGAATTAC
1 AAGAATGAATTAC
212678 AAGAATGAATTAC
1 AAGAATGAATTAC
212691 AAG
1 AAG
212694 GGGTATAGAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.55, C:0.07, G:0.17, T:0.21
Consensus pattern (13 bp):
AAGAATGAATTAC
Left flanking sequence: Indices 212165 -- 212664
CGCCTGACCCACTTTCCACTGTGAACCTGCGCCGACACAAGACACAACCGCAGCAGTTCGACGGA
GAGCATGGTTCCTCCTCCTCACGAAATGGATTTTCAGTTCTTTGCCTCGGGTCAGCGGATGGTCA
GGGGACAGGTAATTACATTAACTAACAAAGCGAAATGGATAGGGATAGCTCGCTTACTACCTTCT
GGTCTCATCCAGCGTCTACAAGCGGAGAATTAGTTATAGCGTAGGGGTGGAAAAGAGGAAGAGTG
CCCGCTAGAATCTTCTTTCACATCCATCTTTCTGCGTCAAAGCTTTATGTTTGCCGCCCATTCTT
ATTCATCATACGACACGAGAAAGACAAAACGAATATCACAAGTAGAGTGAAAAGCATAATCTAAC
CTAGATGGGAATCCGAAGACAAAAGTTGGAATCTAAATCCGTTGAAGACAAAGAATACTGCGTGG
AAGCCATTGGATTTTCAAGATGTAGATGCGAAACCGGATGAGTAT
Right flanking sequence: Indices 212694 -- 213193
GGGTATAGACGTATGACTAGACTATGTTTTATAAATTGATACAACTTCTGAATTGAAGGCTCTGG
CAAGAGTTCGTGAATAGTCGACGTAAACAGATAAGAAAGAAGGATTCTAATTCTAGGCCAACCGG
CCCTAACTGATAGGGGTATTGGTCTTCTTTACCAATGTTTGGTAAAAAAGTTATATTGTACCCGA
CCTGTTCGGATATGTGTTAGAGTCGATAGGAGGTTCCCTCCCGAACTCGATCAAAATAAGGACGG
ACGAATATGTTTTGTAAATCTCTCACTGGAGCATCCTCAGGAAAAGGTGTAAGTGAAGGAGTTGC
CCGATCCCGAAGAAATTCACATACTCTCTTTATCCTCAGAGTTCTTAATGGCTTTAGTAAGGAAA
GTCTTAAAACCAGCCTGCCGTTTGGTCTTGTTCTTCCCTCTATGCCAAGATAAATCGAAAGGAGA
AATCTTGAGATCCCCGGTAGCGGGAGGACCCATTAGAGCTGCAAG
Found at i:242024 original size:22 final size:22
Alignment explanation
Indices: 241996--242040 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
241986 TGCGAAACTC
241996 AACCACTGAAATTGGTACACGA
1 AACCACTGAAATTGGTACACGA
242018 AACCACTGAAATTGGTACACGA
1 AACCACTGAAATTGGTACACGA
242040 A
1 A
242041 GGCTCCACTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.42, C:0.22, G:0.18, T:0.18
Consensus pattern (22 bp):
AACCACTGAAATTGGTACACGA
Left flanking sequence: Indices 241496 -- 241995
CTGGCTATTGCTTTCTCACTCATTGATCAAGGGAAGAGGGTCGGGCACTTGAAAGCTATCGCTTG
AGATAAAGAACATATAGGTACAGAGCCCTTTCGGTAGGGGGTCTGGGTCCGTCTCAGTTCAGTAT
TGGAGTCCATTGTGTTGTGAGAATCTTTTAGAAATGCATTTGATCAAGAGGAAAGGATTGAACGA
CTGATCGACCAGGGAGAAAGCTACCTTTTTAATGTCCCTCCCAAAAAGTAGAACTTTCGGTCTAC
TCAGATAGGAAAGTCAAGTTCATGTGGAAGCTTCAGTCACAGGTGGGGAAGCAAGAGAGAGAGAA
GGAAGCTTGGTTCGACCAGACATTGATCCCCTCGGAAAAATCCCATGTTGATGGAGATCCATCCG
TTGGGGCACCATACCCCACCCACACCCAAATCAATGCTCGGCTAGCTTGTTTCTGATGACTATTT
GGGATTTTCCAAAAAGAAGAGGAAGATGACGGGAGTGCGAAACTC
Right flanking sequence: Indices 242041 -- 242540
GGCTCCACTATGCGGGTTCACCTCTTAATATCTTAAAAAACACGAAATGCGGGCTCAAGAGAAAG
CAAAGCGAAAGTTAGGAGATATAGGAGAACCATGGGTTGAGGACAAAGGGCATGATCAAACCGTC
TTTTCGGATGAGTACTTTGCTTCGGTACCGGGAGTCTGACAAATGAAGTGAACTCTACATTGACT
GCCTAGTACTCGACTCGGAAAGAAGACTCACTCACTGTGCTTTCATTTCATGACAAAGTGGCCGA
GAAAAGACCTTATTCTGTGTTGAAGCAAGAGGCATTAGGAATCCTAGGAAGAGCGCCAGAAAGAA
GCTCACTCAGTAGTGTGGTCTCATCGAGTCGGAGAGGAAGCATCAATCAGCGCATAGGGAATCCG
GTGAGAGTGCTCAACAGCAGCTCCCGGTTAAATCGATAGGCCGAAAGCTGATTTAGACAAAAAGA
TTTTTGGTTGGGAGGGATACATGTTCCCGTCCCAACGGAGTGATT
Found at i:337355 original size:28 final size:28
Alignment explanation
Indices: 337287--337343 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
337277 CAACTACCGA
337287 TATCTATTAATATCTTTTCTTATAATGT
1 TATCTATTAATATCTTTTCTTATAATGT
337315 TATCTATTAATATCTTTTCTTATAATGT
1 TATCTATTAATATCTTTTCTTATAATGT
337343 T
1 T
337344 GTTGTTAAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.28, C:0.11, G:0.04, T:0.58
Consensus pattern (28 bp):
TATCTATTAATATCTTTTCTTATAATGT
Left flanking sequence: Indices 336787 -- 337286
TTCACGCAAATCCGAAGAAGTTATCACGGACGAGCCACATGCAGGGAAACTTGCACGTGTGGTTC
TGGCCGGGCTTTCCTGAGGTATCTAATAACCTTGCTTCTGCTCGCCGCTGGCGCACCTCTCCTAA
CTATTGCCCATTTATTCTGGAATAATTTTTTTAGGAGGGACAATTTTACATATTTCTGCCAAATC
CTTCTATTATTAAGTACGGCTGGTACCATTTCGATGTGTTTCGATTCTTCCGAACAAGAGAGGTT
TGATGCTTTTGAATTCATTGTATTAATTCTACTTCCTACTCGCAGTATGCTCTTTATGATCTCGG
CTCATGATTCAATTGCCATGTATTTAGCTATTGAGCCTCAAAGTTTATGTTTTTATGTGATCGCA
GCATCAAAAAGAAAGTCTGAATTTTCCACGGAAGCCGGCTCGAAATATTTGATCTTAGGTGCATT
TCCCTCTGGAATCTTATTGTTTGGGTACGACCGGACAACTACCGA
Right flanking sequence: Indices 337344 -- 337843
GTTGTTAAATATATATATCGTAAACTACCGGATCGGGTATTACTTAGATGTGAAACTTGCAGACC
TCATTGGTTGTGATATTGATCGTCACGGGGGGAACGAAATCTAAGAATATATAGACTTGTAGAGA
CCCTCTATGTAGTTGTCTATCTAGGGCGATCGATCTACATCTTTCCCCATAGCCCTGGGGCTGTG
TCTCGATCTCCTACGTGCGAAATCTGAGGGACTAGTTCCTATGGAGATTCCCCTTGGTCTAATTC
CACGCCTTATGACGTTTCGAAAAGGGAGTCGGTGTGGCGTAAAGTGAAGATCACGGGAAGTAGAG
AAGAATTCCCTTTCTGGGGTATTCCGAAGGTGTAACCTAGACAACGAAAAAGGGGCCCGATACTT
CAACTAGAAGAGCGACCAGTTGGTTCACCAAACCCCGACCCAGCGTTACACGTTTTCCAGGTCCG
AAGGGATCCAGTGCCCAATTACCGACTCCTCCCGGAATTGCGTTA
Found at i:368249 original size:15 final size:16
Alignment explanation
Indices: 368219--368251 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
368209 TTCTATTCTA
*
368219 ATTATAGGATTCTATT
1 ATTATAGGATTATATT
368235 ATTATA-GATTATATT
1 ATTATAGGATTATATT
368250 AT
1 AT
368252 ATATTATATA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 10 0.62
16 6 0.38
ACGTcount: A:0.36, C:0.03, G:0.09, T:0.52
Consensus pattern (16 bp):
ATTATAGGATTATATT
Left flanking sequence: Indices 367719 -- 368218
GCAAGTTCAGTCTTTTCAGGGCGAGCTGACCGCAGAAACCGTAGACTTCCATGATGAACCCACCT
TAGCCACCTCCGATCAGACAGAAAGATGCGATCGTTAGAGATTCGACGATTCCCGGTTGGACCTA
TTCAAGCGATTGAACGAGATACTCGACAACTAGAAAGACGCACTTGAATACTGAATGCTATGAGG
AGAAAGAATGACTATCACCAACCATAAAGACGATAAAAGAAGGCACTCCCGTTCCCCCGAAATCA
TCTTCTGTGCGTGGTTATCCAATCATGATGTGGTAGGCTTAGTAGGGCTCGAACCTACAATCTAA
CCGTTATGAGCGGTACGTTTCAACCAATTAAACTATAAGCCCCTACAGATCTCTACATGCAATTC
GCTCACTTCGGGAAGAGCGGACGGAAGGCGACGGGGAGGCCTTTGCTCTATCTGCTTCTTCCTCT
TCTCAGGAATGAAGAATTAGATAAAAAAAAATGGATTCTATTCTA
Right flanking sequence: Indices 368252 -- 368751
ATATTATATATATAATATTCTATATCTATTATTAGAATGAATAATATAATTAAGCAAGCGGCCCT
TTTGCGACTCAAACTGCCGGTACGCTTTCCGGCTCGCAACGACTCAAACGGGCGGAGGCTCTCTA
TTTGCTTGCACTGCCGGCTGTTCGCCTTTAGTTAGAAGTAGAAGTCGCTCTTTGCCCCACACTTC
TAAAAAAGTATGGATTAATTCAGTAAGAAAAAAAAAACTTGGTTACGGGAACCGAAGGTTAGGCC
GACTACTTACTTTCTCCTTACCCTTAACAGGATTGTCTCCTACCGATCGAGGAAAGGCTTAGAAT
CCATGCTTTGACCGGTAATGTCCAATCTAAGAACGTCTTGTGCCTTTTCCTGGGCCCCCTTCATT
CTGACTTAGCTAATTCAATTCTTTCTATTTCTAATGGGCTTATACTTTTTTCTATATCCCCCGAG
AAAAGAAAGTCCTGCTATATCTAATGTATTTTTTCCAGGACCGCT
Found at i:377022 original size:14 final size:14
Alignment explanation
Indices: 377003--377031 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
376993 TTACTAATAT
377003 AATATAGAATATAA
1 AATATAGAATATAA
377017 AATATAGAATATAA
1 AATATAGAATATAA
377031 A
1 A
377032 GGAGGAGGAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.66, C:0.00, G:0.07, T:0.28
Consensus pattern (14 bp):
AATATAGAATATAA
Left flanking sequence: Indices 376503 -- 377002
CCGTGAAGTCTCCCTTTGGACTAAGAAATCGGCACAGAGTAGAATCGAACTGATGTAATGGGCGG
AACGCTCCCCTACCGATGCCTTAGGCCCAAAAAAGCTTTCTTTTTCCTCAGGGGAGACCAGGAGC
CATTGATTGAATCCTTCGAGCTAGTCGGCGAAGGGACCAATGAGTATGATAGAATAGATAGGAAT
GCCAGAGCGTCAATGAAATTCATGTTTTCCGGTTCTCCATTTATGAATAGAAAAGGTCTTGAAGC
CCAAAATCAAGTTTTTTTGGAAAGGAGTAAAGTCAGGCTTTCTTCAACATCTGTACTTGATCTAA
CCCTTTCTTTTGCTTGACTTTCGTTTTCAATAAGGCTACCCTATCGCGATAGACCACCTTACTCA
AATAGGGGGCATCTCGGGCATTGAAAGCAAGGAGACTGGAAAGGGCTGAGGTAAGGGATCGTGAG
CCATAAGCAGCAAGCACAGTATTCAAGTAAAGGCCTTACTAATAT
Right flanking sequence: Indices 377032 -- 377531
GGAGGAGGATTTGGATCAAGCTCATATTACTATCACATTACTATGTTAGGAGATAAAAGCCATTC
AATCCCCGGGAGCTCTTTTTCCCTAAAGCGAACGGTCTACTCAAGCTCAAGAAAAGTAGAAGTTG
TGCAGCAAGTCGGGACTTCAATTCCTATCGTATCAGTTCGAGACAGTCAATTGTATCCCCCTCGA
CGCGAGGCCATCCAAAAGAATGAAGACGAGCTCACCCTGCAAGAAAACGGATGCAACAAGCAACG
ATTGAGCAGGGCGAATCCCTTACCCGGAGTCAAAATGCGCTGCGATCTAGCCTCTCTTGGCGCAC
CTACCTAATAGATAGAGATAAAGCTGAGGTAAGTAGTTAACTGACTAGTGCTTCCAGTCCAACAA
GTCTCCTATTTCCGAGTGAATTAGCAAGAGCACGACCCGCGACCTGTTATTCAGCGACATAAGAC
TTTTGTCGCCTAATCTTCCATTCCCCTCTACCTATGAGCTCCCAA
Found at i:425280 original size:13 final size:13
Alignment explanation
Indices: 425262--425287 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
425252 TCCTGCGAGC
425262 TTAGTTTATGAAT
1 TTAGTTTATGAAT
425275 TTAGTTTATGAAT
1 TTAGTTTATGAAT
425288 AATGCAGCAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.00, G:0.15, T:0.54
Consensus pattern (13 bp):
TTAGTTTATGAAT
Left flanking sequence: Indices 424762 -- 425261
AAGAATAGACGGAGACGAGACGTACGATTGAAATCACGTTTATGAAAGCAATGGCTCTTAGCCGA
CTAAGATGACCACATAGTGGTATACTACTTCACGTAATTCACGTAATTTTCCACTTTACCACTAT
CAGACTAGACCGGAGCTTTTGAATAGGGCTTTGAGGATAAAAAGACTAGCCGGAAAGCCATTCCC
CTGCTTGCGACCGCTGGACCACTTGGAATGATGGAAAAGAGAGTACAGAGAGCATTCCATATGGG
GCTTCCCATCGGGGCTACCATTTTATCAGGCCCGATCGAGGTTCTCTTCTTTCCCGTTCATATGA
AAAAGACCTGCAATGCTAATCTCGTTAGGCCACCCGAACCCATCGAACCGGAGTTAGATAGGTGA
AAAGATAACAAGACAACACCTGCCTATATCGCTCCTGTCTAAGCGAGCGAGACTTTTTCCATTGA
TATTTCCATATCATGTAGCGAGACTCCACTTTAGATCCTGCGAGC
Right flanking sequence: Indices 425288 -- 425787
AATGCAGCAATCGTAGGGTCGACAGTACCGGTGGGCTTTGAGCTACCAGAGCAAGGAGATAGAGC
TTGAGCTTTTCCTTCATGGACCAAGGCGACTCTCGTTAGCTCTACTTGGGCTTAGTGCGATTCGA
AACTGGGATTTTTTCTAGCCCGAAGAACGAACAAAGACAACAAGGAGCGACTGATAAGGAGCGGT
TCAAGCTTTCTGGCCATTCCAACTGCCTCCATTATTCTACTTTTTAAGCGCCATAAGCAGCCAAG
CATAGTGGTTCGCTCAAGCAATGGAGTTTGCGAAACTTCCGTTCCGGTAGTCCTTAACGCAAGGA
AATAGTAAGATCAGACCCTCGAATTCGATTACACACAAGCTGCCAAGTAAGCTCTCGAAAGAGCT
ACCTCAGAATGAAAGCTACATCAATCCAAAGGAATTCAATCCGTTATATCTCCACCTCGTAAAGC
CGTAACAGCATCGACTCATTAATGCGCCCTCAAGGGGCAGCCTAT
Found at i:490225 original size:24 final size:24
Alignment explanation
Indices: 490198--490245 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
490188 AACTTGCAAA
*
490198 CATAACCAGGCAGTGAGGTATCTT
1 CATAACCAGGCAGTGAGGAATCTT
* *
490222 CATACCCAGGCGGTGAGGAATCTT
1 CATAACCAGGCAGTGAGGAATCTT
490246 AAGGGGAGGG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (24 bp):
CATAACCAGGCAGTGAGGAATCTT
Left flanking sequence: Indices 489698 -- 490197
GGCCAAATCAGGTCTTGTAATATACTGCAGGGCTCCAACGATGCTTCTGTACAGAGATGGATTAT
GAAATGGAGTAGAAGAGACTGCAGCAGAGGACTGATTTTAAAGTTAATTGGAGAAGAGCAGGGCT
TACAATTCAGCATAGCAGCTCTCTGGAGGAGATCCAACGCATATTTTTGCTGTGTTAAAAAAAGT
CCACGATCATTCTTGTCTTGAGTACCTCAATGCCAAGAAAATAGTTCAAGTTCCCGAGGTTCTTT
ATAGCGGAGCACTTAATTCAGTGATTAGAGTGGAGATATAAGAGGTATCACTGCCAGTTATAATA
ATATCATCCACATAAACCGCAAGAATTGTAGTTCGCAAACTGTTAGTTTGAATAAATAACGAGGA
ATCACTACGGCTCATAAGAAAGCCTTTACTGATTAAAAAGCTATAAAACTTATCATACCAAGCGC
GTGATGCCTGTTTAAGACCATACAATGCTTTCTGCAACTTGCAAA
Right flanking sequence: Indices 490246 -- 490745
AAGGGGAGGGGTTGGTAGTGAAGGGAAGTCCAGGGCTGTGTCTGATCAGCTTACTGGGAGAATTC
CAGGCGAGGGAGTATTGGTAAGGTTATGGAGGAAAGAGGAAATAGGATTTTGGGCATCTCTCGTT
GCTTCGGATGTTTATGAGAAAGAAGCTTCTCACAGATATTGACTTTTAGATAGATACCAGCATCG
TATCTTAATTAGCAGTTTCTTGAACTTGGTTGCACTCGTAAAGCAGCTTAAGAGAGCAACGAAAG
ACGGAGCGGTGATATTTCATGACTAGCAAGTGGAGGATCATTCCAGGCTCTAATTCAGTCTCTGA
TGGCGTAGCTGATGTGTCATGCTAGGAAGCTGAGCTAGGGCATTTCTTCTTTCGGTTTAAGTGTT
GTGAAAACCCTCCTCTCCGCTTCTGGCAGCATAGAAGGAAGCTTGGGGGAAAGGTCTAAGTGCAA
GCATTGAGTCAAACTGATTCAGGTATAGCAATGTAGTTCTTGTCT
Found at i:528575 original size:13 final size:13
Alignment explanation
Indices: 528553--528587 Score: 54
Period size: 13 Copynumber: 2.8 Consensus size: 13
528543 ATCAGACAAT
528553 AATAAGAATAATA
1 AATAAGAATAATA
*
528566 AATAATAATAATA
1 AATAAGAATAATA
528579 AA-AAGAATA
1 AATAAGAATA
528588 TTCATGAGGA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
12 6 0.30
13 14 0.70
ACGTcount: A:0.71, C:0.00, G:0.06, T:0.23
Consensus pattern (13 bp):
AATAAGAATAATA
Left flanking sequence: Indices 528053 -- 528552
AGACAATCACAGATTCAGACAATGAGTAAATACTAAACCCGCAAAAGGAAGCCTGCCCTATGATT
ACCAACCTCCGTAGTCTTTGTTGGGAACGTCAAGATAGGAATAAGGAAGCACCAAAAGGACCCCA
GGTTGCTCTGTTCACCCAAGCAATACGTCATCAAGGTGTAAATAGAGTCAGCTCACTTTCAAGCA
AATCAACAAAATAACTTATAGTAAAAGGAAACCAGATAAACATGACAATAGTCTTTCGACGCAAA
ATTCACATAGATAAGAGCAAGAGAACAAGATTCACAATATTTCAAGAGAACCCACACAAAAAAGG
GAACGGGATACCGTTATATTGGGTCAAGGTTTGCACACTCCAACTCCCACTCTCAATGCCTTTAT
TTAGGTCAAGCTCCAACAGGTAGATTACACTAAAAGAAATCCACTCAGACACCTTTTTCACTTAT
TTCTTTTGAGAAAGACATTTTCATATACTGGTTCAATCAGACAAT
Right flanking sequence: Indices 528588 -- 529087
TTCATGAGGATGTTGAAGATTTATTCACATCTTTATTAGAGCAAGGGTTGATCGAGCTTCCCGAA
CCTAAGAGACCGGATGAGGTGGGACGAGTAGGAGATCCCAAATACTGTAATTCCATCGGGTTATT
TGTCATCCGATAGATTATTGTTGAGTTCTTAAAGTGAAAAAAGTTTGAAAATGATGGTGTCATTG
AAATAGACCCTCCTAAGCAACCTGTGGTCACTTCAAATGCTTGTAATAGTTGGAGATATTCTTTG
CCCGATAGCTGAGATCTCGCCAAGCATAGCCTATATCTAGATCTAGTTCTAGCACCGGAAGAGCA
ATTTCAGAGGATCTCACAAAATATGATGAAAGATATATTCAAGGAGAATGGAGCACTCGTGTTAG
CCAAAGGAGTAGGGAAGTCTGGTTTGGGCAACTCCTTATACTGAGACTTGCAAGAGCCGGTGGAA
AAAAATCCTTATGATCCGGTAGAAGCTGGAGCTGTGGAAAATCAA
Found at i:628558 original size:16 final size:16
Alignment explanation
Indices: 628537--628567 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
628527 TGAGAGCCTT
*
628537 TATAAAAAATAAAAAA
1 TATAAAAAAGAAAAAA
628553 TATAAAAAAGAAAAA
1 TATAAAAAAGAAAAA
628568 GGCTAAAAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.81, C:0.00, G:0.03, T:0.16
Consensus pattern (16 bp):
TATAAAAAAGAAAAAA
Left flanking sequence: Indices 628037 -- 628536
CTTTCTTGAAGAGGCTGGGCTGCGTACTTTTCGGCGCCCACCTTTTCTTTAGGTGTTGGGGCAAG
CCCCAGGAAAGTCTAGGTTGGCTCCCAGCTCCATCTCGGTCGGCATCCTGCTCTCGAGGGAATGG
AGTCCTGGAGCGAACTACTCATTGCTGTCTTGCCCAAGGAAGGGCATTTGGAACATTCTTTTTAG
GGAGGGAAAACGTGGTTGACAAGCCACTTCGAGGAGGCGACTGGAGTGCTTTCATCAAATAATGC
ATGTGGGCTGAGCCATTCCCATCCCGACGTGGTGGCCCGATTCGGCCTGGCCTGGTCGGGAAGAG
ATTCACATAGAGACAGACTACTGTTATCTGGGAATATCTTTCTATGTTAGCTAGCGGGGGCGGGC
TTTGCTTTCCTATGGTAGTCCCGCGGCGGCCTCTGACCGTCCGTCCCGTCTCATCTTGATTTGGC
TATACTTGTATGTAGCCAGCCATGTTAGCTTCACATGAGAGCCTT
Right flanking sequence: Indices 628568 -- 629067
GGCTAAAAAAAAAAAGGCACTCATCAGTCGGCCCCTTTCCTATTCAGCCTTGCCACCTCTCCAGT
TAAGAGAATAGGTCCCGCGGCCGCCCGCCTGAATCTATACTAGCTGCCACGCACGACCCGAACGA
TTTCAGCGCCCCTCTCCAGATAAGAAGCAAAGCGTGCCATCACCTACAGCCCTTTCCTCTGCCGG
GGACTTCCATGAAATGAAAACGGGCGGCATCGTCGTATGCTCGACATTTGTTGCCCTGGTTTATA
CCCCGGAGTACTCCTATGGCCGATCTGTCACCCAACCTCCTTAAACAACCTAAAGGCTTGGCCCC
GTTCCGTTTGGAGTTGGAGAATGGGCCTTATGGCACGGCTTAGTCAGTTATTCTCGCAGATAAGA
TTCGGACCGCCACTTCTCTGAAAGCATGGTTTTTGCCTCCCTCCTTGGAGTTCGTCCATTCGTTG
GGCGATCCCTTGCTCTCACGTTCGAGTGTTTGCTCGTCGTTTAGG
Found at i:628575 original size:15 final size:15
Alignment explanation
Indices: 628555--628585 Score: 53
Period size: 15 Copynumber: 2.0 Consensus size: 15
628545 ATAAAAAATA
628555 TAAAAAAGAAAAAGGC
1 TAAAAAA-AAAAAGGC
628571 TAAAAAAAAAAAGGC
1 TAAAAAAAAAAAGGC
628586 ACTCATCAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 8 0.53
16 7 0.47
ACGTcount: A:0.71, C:0.06, G:0.16, T:0.06
Consensus pattern (15 bp):
TAAAAAAAAAAAGGC
Left flanking sequence: Indices 628055 -- 628554
GCTGCGTACTTTTCGGCGCCCACCTTTTCTTTAGGTGTTGGGGCAAGCCCCAGGAAAGTCTAGGT
TGGCTCCCAGCTCCATCTCGGTCGGCATCCTGCTCTCGAGGGAATGGAGTCCTGGAGCGAACTAC
TCATTGCTGTCTTGCCCAAGGAAGGGCATTTGGAACATTCTTTTTAGGGAGGGAAAACGTGGTTG
ACAAGCCACTTCGAGGAGGCGACTGGAGTGCTTTCATCAAATAATGCATGTGGGCTGAGCCATTC
CCATCCCGACGTGGTGGCCCGATTCGGCCTGGCCTGGTCGGGAAGAGATTCACATAGAGACAGAC
TACTGTTATCTGGGAATATCTTTCTATGTTAGCTAGCGGGGGCGGGCTTTGCTTTCCTATGGTAG
TCCCGCGGCGGCCTCTGACCGTCCGTCCCGTCTCATCTTGATTTGGCTATACTTGTATGTAGCCA
GCCATGTTAGCTTCACATGAGAGCCTTTATAAAAAATAAAAAATA
Right flanking sequence: Indices 628586 -- 629085
ACTCATCAGTCGGCCCCTTTCCTATTCAGCCTTGCCACCTCTCCAGTTAAGAGAATAGGTCCCGC
GGCCGCCCGCCTGAATCTATACTAGCTGCCACGCACGACCCGAACGATTTCAGCGCCCCTCTCCA
GATAAGAAGCAAAGCGTGCCATCACCTACAGCCCTTTCCTCTGCCGGGGACTTCCATGAAATGAA
AACGGGCGGCATCGTCGTATGCTCGACATTTGTTGCCCTGGTTTATACCCCGGAGTACTCCTATG
GCCGATCTGTCACCCAACCTCCTTAAACAACCTAAAGGCTTGGCCCCGTTCCGTTTGGAGTTGGA
GAATGGGCCTTATGGCACGGCTTAGTCAGTTATTCTCGCAGATAAGATTCGGACCGCCACTTCTC
TGAAAGCATGGTTTTTGCCTCCCTCCTTGGAGTTCGTCCATTCGTTGGGCGATCCCTTGCTCTCA
CGTTCGAGTGTTTGCTCGTCGTTTAGGCCGGTGAGTGAGATTTCT
Done.