Specifications
==============

Sequence source file: "/mnt/biodata02/home/xyzhang/pmgdraw-test/test_set/outdir_mt3/NC_058734.1/NC_058734/Repetitive_sequence/123.misa.ini"

Definement of microsatellites (unit size / minimum number of repeats):
(1/10) (2/6) (3/5) (4/5) (5/5) (6/5) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              1
Total size of examined sequences (bp):           711422
Total number of identified SSRs:                 94
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    3


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	85
2	6
3	3

Frequency of identified SSR motifs
----------------------------------

Repeats	5	6	7	8	9	10	11	12	13	14	15	total
A	-	-	-	-	-	27	11	1	2	1		42
C	-	-	-	-	-	2	1		1			4
G	-	-	-	-	-	2		1				3
T	-	-	-	-	-	29	5		1		1	36
AG	-	1		1								2
CT	-	1										1
TC	-	3										3
TAC				1								1
TAG	1											1
TTA	1											1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	5	6	7	8	9	10	11	12	13	14	15	total
A/T	-	-	-	-	-	56	16	1	3	1	1	78
C/G	-	-	-	-	-	4	1	1	1			7
AG/CT	-	5		1								6
AAT/ATT	1											1
ACT/AGT	1			1								2