Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_052708
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 735173
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Warning! 12 characters in sequence are not A, C, G, or T
Found at i:98747 original size:36 final size:36
Alignment explanation
Indices: 98669--98750 Score: 155
Period size: 36 Copynumber: 2.3 Consensus size: 36
98659 CTTTCTCATA
*
98669 TTTCTTATTTTTCTGGTTAGAGTCTCACTTCTTCCT
1 TTTCTTCTTTTTCTGGTTAGAGTCTCACTTCTTCCT
98705 TTTCTTCTTTTTCTGGTTAGAGTCTCACTTCTTCCT
1 TTTCTTCTTTTTCTGGTTAGAGTCTCACTTCTTCCT
98741 TTTCTTCTTT
1 TTTCTTCTTT
98751 CTCATATTCT
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
36 45 1.00
ACGTcount: A:0.09, C:0.23, G:0.10, T:0.59
Consensus pattern (36 bp):
TTTCTTCTTTTTCTGGTTAGAGTCTCACTTCTTCCT
Left flanking sequence: Indices 98169 -- 98668
GAAATCGTTCGGCCGCTTCAAGTGGTGTATTCTCGTACCATACGAGAACTCCACCGGGATGGTTC
TTGTTCGTATATGACATTATGTCGGGTCGGCTAGGCCTTGCCAGATGGGTGCCATAGACAAGAAA
GAAGGAAAGGGAATTGGATTCCTCTTCTCTTTATCTACGTTCTGCAATTAGATAGAACCTGTCGG
TCTGAAACGGAACTCTTAGATTAGTAGGAAAGGCAGTGAGCGGCGCACAGGTTCGATTCCCGGCC
GTGACATCAATGACGAGTACGAATTAAATGTGTTAAACATATTGCTAGCATGATTTGCCCCTCCA
AGCATAGTCCAATATCCCATTCACTCTAGTCAGATAGGATCGTAGGCGATCTGACAGTTACCGAC
TCTCCGGCTCCATTTCGGTGCACGATTGGAGAGTTCATTGGGCCCGCCGCTTTCATGATTCACTC
ACTGACTAAAGTAAAGAAAGAGGCTCTTTTCTCTTCTTTCTCATA
Right flanking sequence: Indices 98751 -- 99250
CTCATATTCTCCCGGCTTTTCCTGTCGAAATGAAATAGAATAAGATAAGAGGAAGAAGGTGAGGC
TACCAGCTTTGGTAGGAGAGAAAAGTATAAATTCAATCTAGATATGAATTGAGACGAAAGCTTGA
CAAGCCCATTCATTTAAGAAGGAAAGCGAGAAGTTAGTCGAGCACAACCTTCCAATTAAGCAAGG
GGAAAGCCCCGTGAGCAGCCACCAAGAAGAATGGAACCGTTGGTCTAAGGATCTTCACTATTGGG
CTTTTAGCTTATGAGATCCGGGGTTGGGGAATTCCCCGATCCAGTCCTTTCTTGAGTACTGGAGT
TTAGTTTCACAATCCAGATGCGAGGGAACCATTATTCAAGAAATCCTGCCTTTGATAGTTATACT
AGTTCCATCCTTGTGCTGGGCGGAGGCAAGGCGGATAGAAAGAAAAGAAAGAGTAGGCCTTACCC
TTTAGCTAGCCCCTAGGCGAAGGAAAGAAAGAGGGGTAGCTGGCC
Found at i:112069 original size:30 final size:26
Alignment explanation
Indices: 112016--112068 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
112006 GGTGGGCTTA
112016 TCAGAAAGCCTCTTCTATCTATTTAT
1 TCAGAAAGCCTCTTCTATCTATTTAT
112042 TCAGAAAGCCTCTTCTATCTATTTAT
1 TCAGAAAGCCTCTTCTATCTATTTAT
112068 T
1 T
112069 TGAAAAAAGT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.23, G:0.08, T:0.43
Consensus pattern (26 bp):
TCAGAAAGCCTCTTCTATCTATTTAT
Left flanking sequence: Indices 111516 -- 112015
AAAAAACTCCTGAGAAATAAATCTCGTCAAGCCCACTTCGCGGTGAACCAGACGTACGACTTCTG
AACCCGAAGCTCTTTTATCTTATGATATTAAGAGTTCGAATTTCAATCCCCTTGCTTCGACTCTT
GTTTGAAACTGGTTACCAGCTTATGAGCTGCGGGTAACGTAACTAAGGCTCTACCCTTTCTTTTC
TGGGGGAATTTCTCCTTGATCTGAATTAGGCGGCCTAATCTCCTACTTCTCTTTCTCGTGGCTGG
CTTAACCTCATTCAAAAATGCCCTTTTTCTTGGCTTAAAGAGCCCTTTCTTTTCCACTGACAGTT
CACAATACGCTTTCTAAGCTTAAAGAGTGGTATTTCCTTTAGTTGTGAGGTACTGGCTATTGGAT
TTGAACTGGCTGGATTCCCGCCTGACCCACCTATGGGATTAGAGCTTTGTCCTGAACAGCCCTTT
CTTTCCTGTTCGCCGGAGAGCCACTCTTTTCGCTGGGTGGGCTTA
Right flanking sequence: Indices 112069 -- 112568
TGAAAAAAGTAATTCTCCTTCTCACTCTAGAACGACTCCAACCCCTTTGGATAGAGAGATTTTCG
AGTGATCGGGAATTGCTCACTGTGGGATGGATAAACTGAAAAGAGAGTCAAAGAGATCACCTTAG
TTAGTACACTCGAATCCTCATCAGAAGGAAAGGGAGAGTGGGCAGCCGCTGCTCCTTACTTAGTC
AGTCTCAAGGGGCATTCCTAAGCTTCAATCTATGATTCCTGTAGAATCAACCTAGGTTCGTCCTG
CTCTCTCAACGAGGTTTATTGCCAGCGATGCTCGAAGACGAATCGGCTCTTTCCATCCTTGGAAG
TGGAATAGTTGGTTAATAATTCACCTATTCTAGTTTGGGCTCCCGCTCCTGGCTCTTCATCCGCC
TACTGAGTCTCTCTTGTATGAACGCGAAAACTCTATCATGGCATTGTGGATCCTCAATTCATTGC
TTATCATCGGGTATGTCTTGGTCTAGAAGAAAGGGAGTATAGTAT
Found at i:153132 original size:3 final size:3
Alignment explanation
Indices: 153124--153153 Score: 51
Period size: 3 Copynumber: 9.7 Consensus size: 3
153114 TCAATCAGAC
153124 AAT AAT AAT AAT AAT AAAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT -AAT AAT AAT AAT AA
153154 AAAGAATATT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 23 0.88
4 3 0.12
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (3 bp):
AAT
Left flanking sequence: Indices 152624 -- 153123
ACAATCACAGATTCAGACAATGAGTAAATACTAAACCCGCAAAAGGAAGCCTGCCCTATGATTAC
CAACCTCCGTAGTCTTTGTTGGGAACGTCAAGATAGGAATAAGGAAGCACCAAAAGGACCCCAGG
TTGCTCTGTTCACCCAAGCAATACGTCATCAAGGTGTAAATAGAGTCAGCTCACTTTCAAGCAAA
TCAACAAAATAACTTATAGTAAAAGGAAACCAGATAAACATGACAATAGTCTTTCGACGCAAAAT
TCACATAGATAAGAGCAAGAGAACAAGATTCACAATATTTCAAGAGAACCCACACAAAAAAGGGA
ACGGGATACCGTTATATTGGGTCAAGGTTTGCACACTCCAACTCCCACTCTCAATGCCTTTATTT
AGGTCAAGCTCCAACAGGTAGATTACACTAAAAGAAATCCACTCAGACTAACAACCTTTTTCACT
TATTTCTTTTGAGAAAGACATTTTCATATACTGGTTCAATCAGAC
Right flanking sequence: Indices 153154 -- 153653
AAAGAATATTCATGAGGATGTTGAAGATTTATTCACATCTTTATTAGAGCAAGGGTTGATCGAGC
TTCCCGAACCTAAGAGACCGGATGAGGTGGGACGAGTAGGAGATCCCAAATACTGTAATTCCATC
GGGTTATTTGTCATCCGATAGATTATTGTTGAGTTCTTAAAGTGAAAAAAGTTTGAAAATGATGG
TGTCATTGAAATAGACCCTCCTAAGCAACCTGTGGTCACTTCAAATGCTTGTAATAGTTGGAGAT
ATTCTTTGCCCGATAGCTGAGATCTCGCCAAGCATAGCCTATATCTAGATCTAGTTCTAGCACCG
GAAGAGCAATTTCAGAGGATCTCACAAAATATGATGAAAGATATATTCAAGGAGAATGGAGCACT
CGTGTTAGCCAAAGGAGTAGGGAAGTCTGGTTTGGGCAACTCCTTATACTGAGACTTGCAAGAGC
CGGTGGAAAAAAATCCTTATGATCCGGTAGAAGCTGGAGCTGTGG
Found at i:153145 original size:13 final size:13
Alignment explanation
Indices: 153127--153154 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
153117 ATCAGACAAT
153127 AATAATAATAATA
1 AATAATAATAATA
153140 AATAATAATAATA
1 AATAATAATAATA
153153 AA
1 AA
153155 AAGAATATTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (13 bp):
AATAATAATAATA
Left flanking sequence: Indices 152627 -- 153126
ATCACAGATTCAGACAATGAGTAAATACTAAACCCGCAAAAGGAAGCCTGCCCTATGATTACCAA
CCTCCGTAGTCTTTGTTGGGAACGTCAAGATAGGAATAAGGAAGCACCAAAAGGACCCCAGGTTG
CTCTGTTCACCCAAGCAATACGTCATCAAGGTGTAAATAGAGTCAGCTCACTTTCAAGCAAATCA
ACAAAATAACTTATAGTAAAAGGAAACCAGATAAACATGACAATAGTCTTTCGACGCAAAATTCA
CATAGATAAGAGCAAGAGAACAAGATTCACAATATTTCAAGAGAACCCACACAAAAAAGGGAACG
GGATACCGTTATATTGGGTCAAGGTTTGCACACTCCAACTCCCACTCTCAATGCCTTTATTTAGG
TCAAGCTCCAACAGGTAGATTACACTAAAAGAAATCCACTCAGACTAACAACCTTTTTCACTTAT
TTCTTTTGAGAAAGACATTTTCATATACTGGTTCAATCAGACAAT
Right flanking sequence: Indices 153155 -- 153654
AAGAATATTCATGAGGATGTTGAAGATTTATTCACATCTTTATTAGAGCAAGGGTTGATCGAGCT
TCCCGAACCTAAGAGACCGGATGAGGTGGGACGAGTAGGAGATCCCAAATACTGTAATTCCATCG
GGTTATTTGTCATCCGATAGATTATTGTTGAGTTCTTAAAGTGAAAAAAGTTTGAAAATGATGGT
GTCATTGAAATAGACCCTCCTAAGCAACCTGTGGTCACTTCAAATGCTTGTAATAGTTGGAGATA
TTCTTTGCCCGATAGCTGAGATCTCGCCAAGCATAGCCTATATCTAGATCTAGTTCTAGCACCGG
AAGAGCAATTTCAGAGGATCTCACAAAATATGATGAAAGATATATTCAAGGAGAATGGAGCACTC
GTGTTAGCCAAAGGAGTAGGGAAGTCTGGTTTGGGCAACTCCTTATACTGAGACTTGCAAGAGCC
GGTGGAAAAAAATCCTTATGATCCGGTAGAAGCTGGAGCTGTGGA
Found at i:201566 original size:19 final size:19
Alignment explanation
Indices: 201542--201581 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
201532 GCTTGCAGCT
201542 ATTTAAATAAGAAAGTCTA
1 ATTTAAATAAGAAAGTCTA
201561 ATTTAAATAAGAAAGTCTA
1 ATTTAAATAAGAAAGTCTA
201580 AT
1 AT
201582 GAAAAAAAGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.53, C:0.05, G:0.10, T:0.33
Consensus pattern (19 bp):
ATTTAAATAAGAAAGTCTA
Left flanking sequence: Indices 201042 -- 201541
TGCCAAAGATCCTACTTCTACAATTGGTAGGTCACCGGGTTATTCAAATAAGTTGTGTTTTCCGT
GGTTTTCCCATGTTACAACTTCCGTACCAACGATCCGAAATGGATTGGTTAAACATTTCATTAGG
GAGCCTGGTTTTGACTCTTATGTGTGGTATTCATTCTCGTTCGGCTCTTGGAATCACATCCAGTA
GTGGTTGGAACAGCTCGCAAAATCCAACCACTTCACCTACTTTATTGCCCCCAACGCTTTCTCGT
ACCTCTATTGAAACAGAATTGTTTCATGTTCTTTCATCGATTGGTTATTTCTCTCCGTTCGTATC
TCTTTTTCCAATTTCGGTCTCGATTAGTTTACAAGATTGAATGGCCAATTCTCCTCCGATTCGAT
TGTTTTCCAAGAATGTCACGCCGGGTATGTAAGCCATGTATCTGGGAAGAACTTTCAAGAAGGGC
TTTCGGTTTTGTTTTTTGCACCCTGTTTTGGTCTTGCTTGCAGCT
Right flanking sequence: Indices 201582 -- 202081
GAAAAAAAGAAAAAGAGAGATCGCAGATCGAGCGTTAAATGCGTTAGTTTACTAACTCGACCAGC
CAGAGGAAGAGGATGTTGACTACACTTAGTTAGGTAAGGCAGGCCGTTTGGTAGGCTCTCCAGAC
AGACCAAGGGCAGAGGCTTGGAGGGATAGTGAAAGTGAACTTTCTATGCCTGGTTCTTAGTTCCT
TCTTTGGCACTGAAAATTGTACTCTTCGATATGCTCTTTATCTTCTGTTTTAAGAATGTCCCATT
CTCCGAGGTTTGAGAATCTCCTTCTGACCTAGCTTATTCTGTCAAATTGGTTCTTCTTCTTGCTT
AACTTCTTTAGTTACTTTAGTGGCCTTCTTCTTCGTAATGCCTTTCTTGAACTTCTTTCTGGACC
CCTTCCCTTCTATGGGTATGGGTGGCTCCTCAAGTCAAGTCCACTTTTCATGTTATTAAAGGAGC
GTGTACTTTGATTATTACTTATTTGCCGGGTTCTTTGCTTGCTCA
Found at i:201591 original size:19 final size:19
Alignment explanation
Indices: 201550--201593 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
201540 CTATTTAAAT
** *
201550 AAGAAAGTCTAATTTAAAT
1 AAGAAAGTCTAATGAAAAA
201569 AAGAAAGTCTAATGAAAAA
1 AAGAAAGTCTAATGAAAAA
201588 AAGAAA
1 AAGAAA
201594 AAGAGAGATC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.61, C:0.05, G:0.14, T:0.20
Consensus pattern (19 bp):
AAGAAAGTCTAATGAAAAA
Left flanking sequence: Indices 201050 -- 201549
ATCCTACTTCTACAATTGGTAGGTCACCGGGTTATTCAAATAAGTTGTGTTTTCCGTGGTTTTCC
CATGTTACAACTTCCGTACCAACGATCCGAAATGGATTGGTTAAACATTTCATTAGGGAGCCTGG
TTTTGACTCTTATGTGTGGTATTCATTCTCGTTCGGCTCTTGGAATCACATCCAGTAGTGGTTGG
AACAGCTCGCAAAATCCAACCACTTCACCTACTTTATTGCCCCCAACGCTTTCTCGTACCTCTAT
TGAAACAGAATTGTTTCATGTTCTTTCATCGATTGGTTATTTCTCTCCGTTCGTATCTCTTTTTC
CAATTTCGGTCTCGATTAGTTTACAAGATTGAATGGCCAATTCTCCTCCGATTCGATTGTTTTCC
AAGAATGTCACGCCGGGTATGTAAGCCATGTATCTGGGAAGAACTTTCAAGAAGGGCTTTCGGTT
TTGTTTTTTGCACCCTGTTTTGGTCTTGCTTGCAGCTATTTAAAT
Right flanking sequence: Indices 201594 -- 202093
AAGAGAGATCGCAGATCGAGCGTTAAATGCGTTAGTTTACTAACTCGACCAGCCAGAGGAAGAGG
ATGTTGACTACACTTAGTTAGGTAAGGCAGGCCGTTTGGTAGGCTCTCCAGACAGACCAAGGGCA
GAGGCTTGGAGGGATAGTGAAAGTGAACTTTCTATGCCTGGTTCTTAGTTCCTTCTTTGGCACTG
AAAATTGTACTCTTCGATATGCTCTTTATCTTCTGTTTTAAGAATGTCCCATTCTCCGAGGTTTG
AGAATCTCCTTCTGACCTAGCTTATTCTGTCAAATTGGTTCTTCTTCTTGCTTAACTTCTTTAGT
TACTTTAGTGGCCTTCTTCTTCGTAATGCCTTTCTTGAACTTCTTTCTGGACCCCTTCCCTTCTA
TGGGTATGGGTGGCTCCTCAAGTCAAGTCCACTTTTCATGTTATTAAAGGAGCGTGTACTTTGAT
TATTACTTATTTGCCGGGTTCTTTGCTTGCTCAATAGGAGGTGAG
Found at i:293626 original size:24 final size:24
Alignment explanation
Indices: 293593--293640 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
293583 CCCTCCCCTT
*
293593 AAGATTCCTCACCGCCTGGGTATG
1 AAGATACCTCACCGCCTGGGTATG
* *
293617 AAGATACCTCACTGCCTGGTTATG
1 AAGATACCTCACCGCCTGGGTATG
293641 TTTGCAAGTT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (24 bp):
AAGATACCTCACCGCCTGGGTATG
Left flanking sequence: Indices 293093 -- 293592
AGACAAGAACTACATTGCTATACCTGAATCAGTTTGACTCAATGCTTGCACTTAGACCTTTCCCC
CAAGCTTCCTTCTATGCTGCCAGAAGCGGAGAGGAGGGTTTTCACAACACTTAAACCGAAAGAAG
AAATGCCCTAGCTCAGCTTCCTAGCATGACACATCAGCTACGCCATCAGAGACTGAATTAGAGCC
TGGAATGATCCTCCACTTGCTAGTCATGAAATATCACCGCTCCGTCTTTCGTTGCTCTCTTAAGC
TGCTTTACGAGTGCAACCAAGTTCAAGAAACTGCTAATTAAGATACGATGCTGGTATCTATCTAA
AAGTCAATATCTGTGAGAAGCTTCTTTCTCATAAACATCCGAAGCAACGAGAGATGCCCAAAATC
CTATTTCCTCTTTCCTCCATAACCTTACCAATACTCCCTCGCCTGGAATTCTCCCAGTAAGCTGA
TCAGACACAGCCCTGGACTTCCCTTCACTACCAACCCCTCCCCTT
Right flanking sequence: Indices 293641 -- 294140
TTTGCAAGTTGCAGAAAGCATTGTATGGTCTTAAACAGGCATCACGCGCTTGGTATGATAAGTTT
TATAGCTTTTTAATCAGTAAAGGCTTTCTTATGAGCCGTAGTGATTCCTCGTTATTTATTCAAAC
TAACAGTTTGCGAACTACAATTCTTGCGGTTTATGTGGATGATATTATTATAACTGGCAGTGATA
CCTCTTATATCTCCACTCTAATCACTGAATTAAGTGCTCCGCTATAAAGAACCTCGGGAACTTGA
ACTATTTTCTTGGCATTGAGGTACTCAAGACAAGAATGATCGTGGACTTTTTTTAACACAGCAAA
AATATGCGTTGGATCTCCTCCAGAGAGCTGCTATGCTGAATTGTAAGCCCTGCTCTTCTCCAATT
AACTTTAAAATCAGTCCTCTGCTGCAGTCTCTTCTACTCCATTTCATAATCCATCTCTGTACAGA
AGCATCGTTGGAGCCCTGCAGTATATTACAAGACCTGATTTGGCC
Found at i:308068 original size:19 final size:19
Alignment explanation
Indices: 308017--308069 Score: 51
Period size: 19 Copynumber: 2.9 Consensus size: 19
308007 CATGGATGCG
308017 AACTTTAACAAAGAAC-TT
1 AACTTTAACAAAGAACTTT
* *
308035 -A-GTTAATTAAA-AACTTT
1 AACTTTAA-CAAAGAACTTT
308052 AACTTTAACAAAGAACTT
1 AACTTTAACAAAGAACTT
308070 AGTTAATTAA
Statistics
Matches: 26, Mismatches: 4, Indels: 9
0.67 0.10 0.23
Matches are distributed among these distances:
16 7 0.27
17 6 0.23
18 4 0.15
19 9 0.35
ACGTcount: A:0.49, C:0.13, G:0.06, T:0.32
Consensus pattern (19 bp):
AACTTTAACAAAGAACTTT
Left flanking sequence: Indices 307517 -- 308016
ATCCTTCTCGTTCGATCCGTGCTTTTAACGAATTACCACTTATTCTGTGGCCTCTAGCCTTCTAC
CCCTCTCCTGACGTCGAGCCGCTTCGCCCCTTAGTCCAGAGCAGGAGCAGCGGATTCGCCTACTT
CAAAGTCTAAAGTAAATAATCCGGATTTCCCCTCTTTCCTTCAAGCAAGGCTGACTTCATTAGCT
ATAGGTAGACTTCACACAAATCCAATCGTACAAGCAAGTAGATCAACATCAACGTTGAATAGTTT
CATTCCATCTAGGGTTCCCTGCAAACTTCTTATATCTACCGGGGCAACAACCTCTTCCTTGAAGA
CCCTGTATTGCTTGTCTTTCTTCTCCTAGTTACTTCTTGGATTCGCCGCAAACAGATGACTAAAA
GCGCTTACTAAGCATAGTCCCGGAAATTCCAATGCAATTAGCAGCGAATCTTGCACTTGAGGAGC
AGATCTCTATCTGTAAGAGCAGATTAGGCGCATGCCATGGATGCG
Right flanking sequence: Indices 308070 -- 308569
AGTTAATTAAAAGGCTCTGCGCAGCAATTTTCCTCGTAGGCAGAGGTTGGACAGAGACTCAAACA
TATAAGGCAAAGGTGTGCAGGAAAGGCACCCGGACTTATTTCCAATCGCATATAGAGTGAGCGAA
GCACGGGTAGATCCCATTACAGATTGAGTAGGGGGAACCCCAACTAAAGTAGCAAAGAGAAAGTC
AGCAGCAATTGCTAATCTCTTGATCTATGCACTTTCAATAGCACGCAGAGGTGAGGATCGACTAA
GCATTTCCCTCGACATAAAGTAGGAGAACTCGCCCAAAGGGAACATTTAGAGTTGTTCCAGAAAG
GTCCGCAGGTGAAAGAAAAGAGACTGGCTCTCTCTATCTATTATACTTATACGCAATATCTTGAA
AGGCGAAGAGTGACTACTTCTTTCTGCTTGTATTGTACTTCCTGTTCCTGTAGTGATACAGGACT
CGTGCAAGAGCGCTTACGGAGGCTTAGAATCCAGATCAGATTCCA
Found at i:332204 original size:19 final size:19
Alignment explanation
Indices: 332182--332235 Score: 62
Period size: 19 Copynumber: 3.0 Consensus size: 19
332172 AAAAAAAAAT
332182 GGATTATATTCTAATTATA
1 GGATTATATTCTAATTATA
*
332201 GGATTCTA-T-T-ATTATA
1 GGATTATATTCTAATTATA
332217 -GATTATATTCTATATTATA
1 GGATTATATTCTA-ATTATA
332236 TATATAATAT
Statistics
Matches: 29, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
15 6 0.21
16 7 0.24
17 2 0.07
18 1 0.03
19 13 0.45
ACGTcount: A:0.35, C:0.06, G:0.09, T:0.50
Consensus pattern (19 bp):
GGATTATATTCTAATTATA
Left flanking sequence: Indices 331682 -- 332181
AAGTAATCAAGCAGCAAGTTCAGTCTTTTCAGGGCGAGCTGACCGCAGAAACCGTAGACTTCCAT
GATGAACCCACCTTAGCCACCTCCGATCAGACAGAAAGATGCGATCGTTAGAGATTCGACGATTC
CCGGTTGGACCTATTCAAGCGATTGAACGAGATACTCGACAACTAGAAAGACGCACTTGAATACT
GAATGCTATGAGGAGAAAGAATGACTATCACCAACCATAAAGACGATAAAAGAAGGCACTCCCGT
TCCCCCGAAATCATCTTCTGTGCGTGGTTATCCAATCATGATGTGGTAGGCTTAGTAGGGCTCGA
ACCTACAATCTAACCGTTATGAGCGGTACGTTTCAACCAATTAAACTATAAGCCCCTACAGATCT
CTACATGCAATTCGCTCACTTCGGGAAGAGCGGACGGAAGGCGACGGGGAGGCCTTTGCTCTATC
TGCTTCTTCCTCTTCTCAGGAATGAAGAATTAGATAAAAAAAAAT
Right flanking sequence: Indices 332236 -- 332735
TATATAATATTCTATATCTATTATTAGAATTAATAATATAATTAAGCAAGCGGCCCTTTTGCGAC
TCAAACTGCCGGTACGCTTTCCGGCTCGCAACGACTCAAACGGGCGGAGGCTCTCTATTTGCTTG
CACTGCCGGCTGTTCGCCTTTAGTTAGAAGTAGAAGTCGCTCTTTGCCCCACACTTCTAAAAAAG
TATGGATTAATTCAGTAAGAAAAAAAAAACTGGGTTACGGGAACCGAAGGTTAGGCCGACTACTT
ACTTTCTCCTTACCCTTAACAGGATTGTCTCCTACCGATCGAGGAAAGGCTTAGAATCCATGCTT
TGACCGGTAATGTCCAATCTAAGAACGTCTTGTGCCTTTTCCTGGGCCCCCTTCATTCTGACTTA
GCTAATTCAATTCTTTCTATTTCTAATGGGCTTATACTTTTTTCTATATCCCCCGAGAAAAGAAA
GTCCTGCTATATCTAATGTATTTTTTCCAGGACCGCTTGCTTCTG
Found at i:332245 original size:21 final size:19
Alignment explanation
Indices: 332203--332252 Score: 64
Period size: 21 Copynumber: 2.5 Consensus size: 19
332193 TAATTATAGG
332203 ATTCTATTATTATAGATTAT
1 ATTCTA-TATTATAGATTAT
*
332223 ATTCTATATTATATATATAAT
1 ATTCTATATTATAGAT-T-AT
332244 ATTCTATAT
1 ATTCTATAT
332253 CTATTATTAG
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
19 9 0.33
20 7 0.26
21 11 0.41
ACGTcount: A:0.38, C:0.06, G:0.02, T:0.54
Consensus pattern (19 bp):
ATTCTATATTATAGATTAT
Left flanking sequence: Indices 331703 -- 332202
AGTCTTTTCAGGGCGAGCTGACCGCAGAAACCGTAGACTTCCATGATGAACCCACCTTAGCCACC
TCCGATCAGACAGAAAGATGCGATCGTTAGAGATTCGACGATTCCCGGTTGGACCTATTCAAGCG
ATTGAACGAGATACTCGACAACTAGAAAGACGCACTTGAATACTGAATGCTATGAGGAGAAAGAA
TGACTATCACCAACCATAAAGACGATAAAAGAAGGCACTCCCGTTCCCCCGAAATCATCTTCTGT
GCGTGGTTATCCAATCATGATGTGGTAGGCTTAGTAGGGCTCGAACCTACAATCTAACCGTTATG
AGCGGTACGTTTCAACCAATTAAACTATAAGCCCCTACAGATCTCTACATGCAATTCGCTCACTT
CGGGAAGAGCGGACGGAAGGCGACGGGGAGGCCTTTGCTCTATCTGCTTCTTCCTCTTCTCAGGA
ATGAAGAATTAGATAAAAAAAAATGGATTATATTCTAATTATAGG
Right flanking sequence: Indices 332253 -- 332752
CTATTATTAGAATTAATAATATAATTAAGCAAGCGGCCCTTTTGCGACTCAAACTGCCGGTACGC
TTTCCGGCTCGCAACGACTCAAACGGGCGGAGGCTCTCTATTTGCTTGCACTGCCGGCTGTTCGC
CTTTAGTTAGAAGTAGAAGTCGCTCTTTGCCCCACACTTCTAAAAAAGTATGGATTAATTCAGTA
AGAAAAAAAAAACTGGGTTACGGGAACCGAAGGTTAGGCCGACTACTTACTTTCTCCTTACCCTT
AACAGGATTGTCTCCTACCGATCGAGGAAAGGCTTAGAATCCATGCTTTGACCGGTAATGTCCAA
TCTAAGAACGTCTTGTGCCTTTTCCTGGGCCCCCTTCATTCTGACTTAGCTAATTCAATTCTTTC
TATTTCTAATGGGCTTATACTTTTTTCTATATCCCCCGAGAAAAGAAAGTCCTGCTATATCTAAT
GTATTTTTTCCAGGACCGCTTGCTTCTGATCGCGCTTTAGAGTCT
Found at i:368199 original size:13 final size:13
Alignment explanation
Indices: 368181--368206 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
368171 AAGGAGCTAA
368181 TACAGAATACGAG
1 TACAGAATACGAG
368194 TACAGAATACGAG
1 TACAGAATACGAG
368207 AAAACTCCTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.15, G:0.23, T:0.15
Consensus pattern (13 bp):
TACAGAATACGAG
Left flanking sequence: Indices 367681 -- 368180
TCGCCTCGGTTCTTGGCTTTGATCCAATTCGGAAGCTCGTTTGCTCACTAGCCGATGTCATTTTC
AATTGACTTAGTTAGAAAAGTATGGGGATACCGTACCACTTTAAATTAAACAAGCGCCAGCAAAA
TGGAGCTTACCGCGCTGAGTTACGTCGTAGGCGAAGCTTTCGATTCGACAAATGAATGGTTGGTG
CTTCCCTTCTTTAGCCTATTTGCCTATTTGGTAGATTCAATTAGGGCTAGCTCAAAGACTGGCTA
ATCCCAATCCGATGGATCAACTCTTTCGCGTCGCTTAACGACTTGTAACTCTGGCGAGTACCGAT
GCTCCAAATTGGATTACCTAGCGCTTGGGTGAGATGTTCGACAAGAGACTAAGGACCTTTTAGGT
GGGAGTTCCATCCGAGACGGACTGGAATCACCGGCTCATACTAGAGCTTCCGGACGAACTCAAAA
GCGAAAGATCGAAGCCTTACCTTATTCATTCGTGGAAGGAGCTAA
Right flanking sequence: Indices 368207 -- 368706
AAAACTCCTTCGAAAACGAAATCGGAAAGAGAGATGCTTTCAATCCAACAATTGTAATTAGTAGC
CGACCTTTAATTGAAATTGACCAATGTTCGTCTATCGGCTCAAGTCTTTCCAGAAGCCGGAAGGA
AGAGCGCTTTTTTGCTTTTCGTGTGATCACTTTCCATAATGGTTTCCTACCGAAGGTAAAAAGGC
AAACAAAGGATACGGGGACCCAAGCTCTTATACGTGAAGTGCTTTCCGGCAAACTTAGTATCGAG
AAAATCCGTTACCGCTCCCGAAGTCAATTTACCCTCAGAGTCAGAGAAAGTAAATGCGTTTACAC
GTACGCATACATAAACAAAGTAGGGCCCAGGAAAGCCATTCCTGCTACAGTACAGAAAAATGCAT
TCGACCACCTGAACTTGAACGCTCTCTTTCTTTTTAACGTTCTAACTGAACACACCTTGAAGAGG
GAGCGTAAAAGCACGCTTCAGAGCATGTGTGCCGCATAAGCTAAG
Found at i:372052 original size:19 final size:19
Alignment explanation
Indices: 372028--372066 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
372018 CAAAGAGCTG
372028 TTTTCTTTCTTGCTT-TGTT
1 TTTTC-TTCTTGCTTCTGTT
*
372047 TTTTCTTGTTGCTTCTGTT
1 TTTTCTTCTTGCTTCTGTT
372066 T
1 T
372067 GGGCTTGCTC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 8 0.44
19 10 0.56
ACGTcount: A:0.00, C:0.15, G:0.13, T:0.72
Consensus pattern (19 bp):
TTTTCTTCTTGCTTCTGTT
Left flanking sequence: Indices 371528 -- 372027
TTCTCCATCCGCCCGCCAGCAGCAGGGGGGTTCGATTCCCGTTATACGCGATGTGGCGAAGAAAA
GCGCTTGTTATTTGCGGAAAGGAAGAAGTCATCCCTCTTGCTGGAGGAAACTACCTTTCTATCCT
TCTCCTGCCCCTCTCAGTTGGAAAAAGGGCTTTCGACTTTCCCTAATCTCCTTTGCTCCCTAATC
CATTCCCGGTGCCATTCAACTATCTGACAATAGAGTATCTAAGTCAAAGCTGTTCCCGGGTTCAG
GTGAAGAATGTTAGAAAGACTCTCATGAAAAAAACCTCTAACTTGGTTCGAGTGGCTGATAGCTG
CTTATCGCTCCTGTCCAGTCATCTTAGTCCATGGCTTCTGTTTCATGCTTGGTTGATGGAAGACA
GCTTTGAGTGCCGTTACTTTCCCCCTCCATGCTTGAAGTTCATTCCTCCGTTGTGCTTTGTCTGT
CATCTTCTTTCTTCCCTTCCTCGGGCACAGTAAGACAAAGAGCTG
Right flanking sequence: Indices 372067 -- 372566
GGGCTTGCTCCTCTGTTATCCCTGACTCCCTAAACTTAATGAATGAAGGAAGGGTCTCCGCTCCT
TACCCTATCGGGCAAGTGGCTTACACTCCTTGCTTGCTTTCATCCTGCTTTTAGTGCCGCTTGCT
TGCTCGAAGGAGGGGCTACCGCTCTTTAACCTCGTCGGTAAAGCGGCTTGAATAGGACTTTCCCT
ATTTTCATTGGCCTTTTCTTCGATGTCAATGTGCTCAGGTCCTTTCTTTGCCCCTTCCCTTGGGT
TGGGCTCTCCCTCAAATGCCCTTTCCCTTCGTTATCTCTACATGAGTGAAACTCAAGCACTCGAA
TATCAGTAGATTAGCGTCACGCCAACGCAACTCTCAAACCATCGGCGAGAGGAGAGTAGGTCCGG
CTATGACTTTCATAGGAACCGTTGGGCCACTATGTCATAGTGAGAGTAGGGACCCATCCCATATG
ACTCAGAGTCAAAGAAAGCTCTTAGCCTCCGACCAGTGAAGATCA
Found at i:383600 original size:17 final size:17
Alignment explanation
Indices: 383578--383612 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
383568 TTCTTTACTT
383578 AGAAATAGAGAATTCTG
1 AGAAATAGAGAATTCTG
383595 AGAAATAGAGAATTCTG
1 AGAAATAGAGAATTCTG
383612 A
1 A
383613 TTCTAAAATC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.49, C:0.06, G:0.23, T:0.23
Consensus pattern (17 bp):
AGAAATAGAGAATTCTG
Left flanking sequence: Indices 383078 -- 383577
ATCATGCCTTTTTGATGACAAGAAATCCTTAAATGAAAGCAAAATCGTGGATCCAAAAATCCGTT
ATCTCCTCGTGCAGCTTCTGGGCTAAAATCCAATCTTTTAAGTGAGAAAGTCGTTATCAATACAA
TTATGCCGCCGAATACAATCACTTTGAAGAAGTCGCAAGTGCGGGTTCAAATGGGAAGTACGAAA
CACTCAATGGAGAATAGGGATCGCTATGCCGAAGAAAAGAGAGAGGTTGCACCAGGAGAAGATAA
GGTCATACCAAGGGCTTTCTATAATTTAAATTAATGATTTTGCTTTGAAAGGAATGTATCCAGCC
TAAACGCAAAGACGGGCCTATCCTATAGGCAGAAGCTACCTATCCGACTAGTAGAAAGCGTGAGG
AGGAAGACTTCTATTCGGCCCCCCTTGGCTACGAAACCAGGCTGTGATCCGCATCGAGAAAGAAA
TGTATTCATGCATCTCTTTAGTTCGAATGCTGGATTTCTTTACTT
Right flanking sequence: Indices 383613 -- 384112
TTCTAAAATCCATTCTCTCACCAACATATATGCTATACCCAAAGCGCTGAAAAGGGCTGATTCTC
GCCATCTAGGAATAAAGAACCGGTATCTTCAATGAAAGCTATCCATCGCTCACCCCCTCTCTCAT
CATAACCTATTTCAGATGTACCCGTCGCTCCTGGGATTCGACTTTCCTTCTGAGGATGGAGAGAA
GTTTGGAGATGGCACCGGGCTCCTGCCTAGCTTCCTGAACCCAATCTGAGCTTACAATGCGAGGT
TTGGGAATACTACCTGACGAGTACCCGTTGACTTTCAATGTCGATTTCTATATGTCTACTCCCGC
GCATACTCCTTGAATATGAGGCAATGCCAATTGTTGAAATGCCATCAGATGAAGGAAACTCTGTA
TCTGTAGATCATGTAATTCCTGCGCCTACTAAAGCCAATAAAGATACCAAATCTTACTAACTACC
GCTAGCTCCATTAAGTCTGCCAGTCTGCATCAGATTATCTCAATG
Found at i:417517 original size:12 final size:12
Alignment explanation
Indices: 417502--417527 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
417492 TTTAATCGAT
417502 GCTTTTGTCAAG
1 GCTTTTGTCAAG
417514 GCTTTTGTCAAG
1 GCTTTTGTCAAG
417526 GC
1 GC
417528 GGCTCCTCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.15, C:0.19, G:0.27, T:0.38
Consensus pattern (12 bp):
GCTTTTGTCAAG
Left flanking sequence: Indices 417002 -- 417501
GAGAGGTCTTTCGGCTTGGACATGACGTTTGCTTGATATTGGGCGGAGTGGGCTTTGTTTGCTGC
TTTGCAGAGACTAGGCTAGGCCACGTGAATTGACCTCACCCATCACATCATCTTGGGAAGCTCCT
CCCTCCTCAACAAGCTCCACCTCCAGAATATCTAGAACCGTTTGGGATTGGACTAGATTGGTTCA
CTCAATATCCTATATAAAGGAGAAAGGGCCAAATCATATATAATGATATAATTGAAATTAAAGTT
ATGGACTCATTTTATAGATATGTTTATGTCTTATCAAGAAGCCCAAAAACTCTTTGATCTCTATA
CTTTAGAAGAGTTGAGGAATTTCCTGGAGCTCTTTCTTTCCATTTCTTTTCTGGTGTAAAACCCT
CCCTATCAATACTTCCTTGCTATTCATTGACAAGAGTTGTAGGGACAAAAATGAGTAATCGAACC
CCTTAGACCCTTTTGCATACTTCGATCTACAAGGCTTTAATCGAT
Right flanking sequence: Indices 417528 -- 418027
GGCTCCTCATATGAAATCCTGAAAAATAGAAATAGCCCATAAAATGACAGCCATCAAAAGGCCTA
AGTCCATATTCTAGCCTCGGTCTGTCCAAATTCAGCGGTCTCTACCCAAGTAGCTCTGGCCCATG
ATCCAAGGGACCTGCAACCAGTTAATCATTCTTTCTTTATTTTCCAACCACTCGGGCAATCATGC
TTGTTTTATCTTCCAACCAATCCCTTTGATTCCGTTTCTGCAGCAGTATATAATCTCGGTCCCTT
ACCTTGATGCCTACAGCTCAATCTTTTTTACAGTGATGGCAATAATATGCGAAATACTGTTTTTT
CTTTTTCTTGGGTTGTTTCTGAATGGCATCATAGCTACACGAGGGAAAGCGATGCTGCCCACTCT
GCCGGGGGCCGCTTTCTTCCCCTCAAAAATGCCAGTTCCACCATCAGGGCCCAGCAAGCAGCATA
ATTCTGTTCCGAGGCTGCGTTTCATTCCAGCACCAGTAGTATATG
Found at i:426186 original size:14 final size:14
Alignment explanation
Indices: 426169--426196 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
426159 GAACCACTAA
426169 CTATAAAGATAAAG
1 CTATAAAGATAAAG
426183 CTATAAAGATAAAG
1 CTATAAAGATAAAG
426197 GAGGTGACTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.57, C:0.07, G:0.14, T:0.21
Consensus pattern (14 bp):
CTATAAAGATAAAG
Left flanking sequence: Indices 425669 -- 426168
AGGAAGAAACTCCATAACATAAGGGGGAAAGCTCCACTCCTACTCCACCTAAGTTGAATCCAGTG
AAGAAGACTGGAACCTGAAAAGGCATCTTTTTCAACACTTTGATTAGTGTAACTACAAACCGCAT
TCTAGCAGCCCTAAAAAAAGAATCTCTAGCGAAGCTGTCAACTCAACCTAAGGAAAGCGATCCGC
TAGTCTAATCTATTCTCTGCTTTCGAGCAGTGAATTCCGGCCAGTCAACTTAGATGTCACTGGAC
TGGGCAAAAGCCCTTCAGTCAGCTTAGATACCGCTCCTGCTGCGTAAGATAATGTTGTAGAGGAG
TTTGTTGTCCTCAACGTTGACCGATTTCAAGAAGAGTCTAATCTAACGGGTCAAATCAAGTCAGT
TTTTCATTGACCTTAGAAGATGATTTCTTTTCCCCGAAATCCAGTACTGTCGAAAAAACAAAATA
AAAATCTAAAAAGAAAATGGAAAGAAACTAAGATAGAACCACTAA
Right flanking sequence: Indices 426197 -- 426696
GAGGTGACTGTAAAGGTCTCCGACCGAGGCTTTCATAGAAAGGAGCTTCGGTGTCACACTGGTCT
GGGCTTGTAGGGGCACCAGAAGCGGGTCTAGAGCCTGCTTCACACCCAAATCTCTTTTTGGACAC
GGACACTCAAATAAATAAAGCGTGCCCAACACCAACGTACAAGACAGATGCCAGGGCAATGAACC
ATAACCCCATTCAATATGGTTCCGACCTGCCTTGAAGCAGGAAGAGGAGCACCCGGGAAGGAGGA
CTAAGGATCTAATCTTCCCCAAGAGGGGAGAATAGGAAAGCAAAGGCTAAGGCAGGGGATCGGAT
TGAGCACTTTCATTCTTCCGGCGGAATCAAAGACATACCTCGATGCCCAGAATAAGGAAATAGAT
TCTTTATCCGCCTTCCTTAATGAAGACGAGGATTTTTAACTACTCGTATCAGCTCAACCAGTTGG
AATATCCCTTGCTCTCGTATCCGTTGGTCAAGATTAGGAAAGTTT
Found at i:439354 original size:15 final size:15
Alignment explanation
Indices: 439334--439363 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
439324 AGGTTATAGC
439334 CTTTTATTTTACTTA
1 CTTTTATTTTACTTA
439349 CTTTTATTTTACTTA
1 CTTTTATTTTACTTA
439364 TTCAATTTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.20, C:0.13, G:0.00, T:0.67
Consensus pattern (15 bp):
CTTTTATTTTACTTA
Left flanking sequence: Indices 438834 -- 439333
TAAACCCAATAAAAAAAGTTTCACCCAGGTATACATATCCTTAGCTTGCGCCCTATTTGAGACTA
AGGCAGGTTTGGAACCCTGTCCTATCACCTTTATCAAATCCCTAGCTCTATTCCTTAGTGCAACT
GTCCTATTCCTACCATGGAAATATCTATATTTCTTTTGTTCTATAGTTTCGGATAGAAAAGCGGA
CGGTATCATATATGAAGAAAGAGATTTAAAAGCCATAAGTCGTGCTAGCAACAGTCTTACTGTCT
TGGCTCCTTTGCCCCGGTCTTTTATTTTTATAAAGTAGCACGTTCCTCTACGAAGGTGCGTTTTA
GGCCACGGTAGCAAGTGTTCTGTAAGGAGCTGTGGGACTAAAAGGCTTATGCTTATCGAGCCCTT
AATTAAGAGGAAGATGTGATTTAGTTTTCCCTGTTTTTCGCAAGTTAATCAGAATCGGCAAGATC
CCCTCTTGTTCTTGCTGCTTGGGAAGAGCAGGAAGAGGTTATAGC
Right flanking sequence: Indices 439364 -- 439863
TTCAATTTAAATCGCAAAAAGATGGATGGGCCAAATTGAACAAATCAATTTGCCTGTGCTATCGG
GCTACTCAGCTTCAAATCCTTCACGCTCCTTGGGATGCCTTACAGTCAGGGAATCACGAAGATGA
AACTAGACTCCTTTTTTGCAGTACCTTCGGTTGAGGTGCATTTATGATTTAATCCAAAGCCTGAG
CCTCTGAACAACCTGATGAATCGCGTTAAATGTGCTTTTCTGGCGTCTTTGAGTTTATGTTATGA
GTTGATCCTAGTTCATAGTAAGTAGAAGGTGTTACGGGTCGGCCTCGGGAATTCGAGGAGCTACT
GACGTTAAGCGTTAAGATTGGACTGCTCTTGGGGGAACAGCTTAGTCCATCTTCAACTCCTAGCA
TGAAAGTGAAAGTCTCAATCCCAGTTCCATATTAAGAAAGTAGACGGACAGAACTCCCCGACCTT
GTTAGGACCCCTTCGGATTGGTCCTCTTCTAGTCGAGTAAGGTGC
Found at i:440977 original size:20 final size:20
Alignment explanation
Indices: 440952--440990 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
440942 AGGTAACTCG
440952 AGAGTA-GAAAGAACTAGAAT
1 AGAGTATGAAAGAAC-AGAAT
*
440972 AGAGTATGACAGAACAGAA
1 AGAGTATGAAAGAACAGAA
440991 CCAGTAGCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 10 0.59
21 7 0.41
ACGTcount: A:0.54, C:0.08, G:0.26, T:0.13
Consensus pattern (20 bp):
AGAGTATGAAAGAACAGAAT
Left flanking sequence: Indices 440452 -- 440951
TCTTCTTTCCCCGTTGTGAAAGGAGTTGGTTCCGTAGTTTTAGAATTCGGCTGATCCCAAGTACT
CCATCTCCATCATTGCATATTTTTATATAGAAAGTAAAGAAGAAAAGGCATAACCAGAAGAATTG
TGTAAAATAAGTGAATTTATCCAGTTGAGGCATGATTGATTTTTTAAAAAGGATTCCCTCCAGAC
AGCTTAACTCCGTCAAGCCTGTACGAGTAAACAATAGATAAGGTTTGCTTGTTGGTTGTTGACCA
ACAGAAAGCATGGGATGCCCCACAACAAATAGATGGGAGCAGGAAATCTTTATCATTCGGCGTAG
TGCAGCTTATATAGAATAGAAGGGGCAAAGCGCTGTTCGTGGCACAGCTTTCTTATATTACGATA
TTTTCATTGATCGTAGCTAATTAGGTGGCAACAACCGAAGAAGCAGAAGAAGTAGCTGCTACCGC
TTCGTGGGCTTCTTCTTTTTCTGAGTCTGCTCGAAAGGTAACTCG
Right flanking sequence: Indices 440991 -- 441490
CCAGTAGCTTTGAGCTTTCACGTGTTTCAGCTCTTGTTCACAATCCAGTTGCTATTGAATCAGCG
TAAGGAGATGCCGATGAGGGTACAAGAAAAGAATGAGCTTTTGTTCAGAGCTTGAATCAGAATAT
CCTTCAGTAACTCCAGGATTCCCCTGGTAGGGCATACAGGACATACCAGGTGAGAAGTTCGGGCG
GAAAGATAGATCGAGTTTACTTTACCCTCTTGATTGACTTTCACTTTAGGACTGAAAGATAGCAA
AGGAAATGGCAGCAGTGCTTTATATATTAGGTCTTCGTTGATCACTTCTGCTTAATTTAAGCACT
TCTCTTTCGAAACCTAGAAAGCGAGAAAGAGAAGAGTCAGTTCTTGTGAACGACTCCGATGCTAT
TTCTATTTAAGAAGATGGAGGAATAAGCGATGCTGCTAAGATCCGCAGTCGATTTAGCTCTTGAG
GGAAGGGAAAGGCGGACTTTAATTTGATGGGCTTTTAGGACTGGC
Found at i:446581 original size:13 final size:13
Alignment explanation
Indices: 446563--446591 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
446553 GGATGAGTAT
446563 AAGAATGAATTAC
1 AAGAATGAATTAC
446576 AAGAATGAATTAC
1 AAGAATGAATTAC
446589 AAG
1 AAG
446592 GGGTATAGAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.55, C:0.07, G:0.17, T:0.21
Consensus pattern (13 bp):
AAGAATGAATTAC
Left flanking sequence: Indices 446063 -- 446562
CGCCTGACCCACTTTCCACTGTGAACCTGCGCCGACACAAGACACAACCGCAGCAGTTCGACGGA
GAGCATGGTTCCTCCTCCTCACGAAATGGATTTTCAGTTCTTTGCCTCGGGTCAGCGGATGGTCA
GGGGACAGGTAATTACATTAACTAACAAAGCGAAATGGATAGGGATAGCTCGCTTACTACCTTCT
GGTCTCATCCAGCGTCTACAAGCGGAGAATTAGTTATAGCGTAGGGGTGGAAAAGAGGAAGAGTG
CCCGCTAGAATCTTCTTTCACATCCATCTTTCTGCGTCAAAGCTTTATGTTTGCCGCCCATTCTT
ATTCATCATACGACACGAGAAAGACAAAACGAATATCACAAGTAGAGTGAAAAGCATAATCTAAC
CTAGATGGGAATCCGAAGACAAAAGTTGGAATCTAAATCCGTTGAAGACAAAGAATACTGCGTGG
AAGCCATTGGATTTTCAAGATGTAGATGCGAAACCGGATGAGTAT
Right flanking sequence: Indices 446592 -- 447091
GGGTATAGACGTATGACTAGACTATGTTTTATAAATTGATACAACTTCTGAATTGAAGGCTCTGG
CAAGAGTTCGTGAATAGTCGACGTAAACAGATAAGAAAGAAGGATTCTAATTCTAGGCCAACCGG
CCCTAACTGATAGGGGTATTGGTCTTCTTTACCAATGTTTGGTAAAAAAGTTATATTGTACCCGA
CCTGTTCGGATATGTGTTAGAGTCGATAGGAGGTTCCCTCCCGAACTCGATCAAAATAAGGACGG
ACGAATATGTTTTGTAAATCTCTCACTGGAGCATCCTCAGGAAAAGGTGTAAGTGAAGGAGTTGC
CCGATCCCGAAGAAATTCACATACTCTCTTTATCCTCAGAGTTCTTAATGGCTTTAGTAAGGAAA
GTCTTAAAACCAGCCTGCCGTTTGGTCTTGTTCTTCCCTCTATGCCAAGATAAATCGAAAGGAGA
AATCTTGAGATCCCCGGTAGCGGGAGGACCCATTAGAGCTGCAAG
Found at i:458744 original size:29 final size:29
Alignment explanation
Indices: 458702--458760 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
458692 CTTTCCTATT
458702 TGTTCTTAGAAATCAAGTTACAGGGCTAG
1 TGTTCTTAGAAATCAAGTTACAGGGCTAG
458731 TGTTCTTAGAAATCAAGTTACAGGGCTAG
1 TGTTCTTAGAAATCAAGTTACAGGGCTAG
458760 T
1 T
458761 TTTCCGGCTG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.31, C:0.14, G:0.24, T:0.32
Consensus pattern (29 bp):
TGTTCTTAGAAATCAAGTTACAGGGCTAG
Left flanking sequence: Indices 458202 -- 458701
GCGACCGACTCTTTCGCTCTTAGCTTTACCACGTGTAGGCAGGGAGCTTTACAAACCCCGGATAG
GGCTTTGCAAAAGTCTTTCTCCAAAAAGAATAGATAGGACTATTTATAATAATGAATGCTCCACC
GCGATTACTGAGGGTCAGATCGAAGAAGTTCTTTGTTCGTACTCATGCTAGGTCATCGGCTAGTA
AGGACTACTGCTGACGAAGCAAAAAGGTATGTATTTGGTTCCGTCAGCCTTATAACTTGAACAGA
GAAAGGTATCGCTTATCAAAGAAGGGGGTTGGACCGCTTTGCTTGGGGCACCCAAACCCAAGACC
AACGCTTTCTTAATTGGGATCGCCAGATCCAATGCAATGGTAAAGGTAGTGACTCGGGGTTGATG
GGGGATTTGGTCCGAATAATCGAATTCCTTAGATCTTGGTTTCGAAATCGAGGCCATAACAAGGA
CTTTGTAACAGGAATGCAGCCCTCGGTTAAGCGCGCTTTCCTATT
Right flanking sequence: Indices 458761 -- 459260
TTTCCGGCTGGATGATTCTGAATCAACTACTTTGATCAGCCCAACCAGACCCCGGTGTTACCCTT
TGCGCATTAGCGAGCCCCTCTCTTAATGGTGTAAATGCCCAATGCAGCTTCCTAATGGAAATGTC
AAATGAACATCTTCGCAGATTCCTCGAGGCTCATCTTTGAAGAAAGTTTCCAGGAACAATGTTGT
ATGTAACCAGGATCTATAATCTATAGGATACCAACCTCCCCCCCAAAAAAGCCAGTACAGTAGCT
CTCCTCTATATGGTTCACCTTCGAATTGGAGCTTTTTTTAATGGAAAGGGTTCTTTCGTGCTATC
GGAGAGGGGTCGAACCCTTAACTTATTTTATTATGTTGTACATAAATAGAATCTATTTATGTTAT
GTAATATTAGAAAGAAAAAGGTGGCTGTTCTGTTAATGGGACCAAATGAGTGACTTTTATACTGA
TTCCTCTTTGAGGGGTTGATTTTGAATGACTTTCTGATTTCGCCC
Found at i:497290 original size:28 final size:28
Alignment explanation
Indices: 497258--497347 Score: 180
Period size: 28 Copynumber: 3.2 Consensus size: 28
497248 CGAGTGACCA
497258 CCCCTCCCCCTATGGTCGAGCTGCTTCG
1 CCCCTCCCCCTATGGTCGAGCTGCTTCG
497286 CCCCTCCCCCTATGGTCGAGCTGCTTCG
1 CCCCTCCCCCTATGGTCGAGCTGCTTCG
497314 CCCCTCCCCCTATGGTCGAGCTGCTTCG
1 CCCCTCCCCCTATGGTCGAGCTGCTTCG
497342 CCCCTC
1 CCCCTC
497348 TCCTGACAAG
Statistics
Matches: 62, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 62 1.00
ACGTcount: A:0.07, C:0.49, G:0.20, T:0.24
Consensus pattern (28 bp):
CCCCTCCCCCTATGGTCGAGCTGCTTCG
Left flanking sequence: Indices 496758 -- 497257
GTCTTAAAAAAGTGCCCTATCGCGTAAAGCCAAGTATGTGTGGCCCGTCTTCGTGATTTCCCCCC
TACACGCTTACCCTCTCGCGGATGTAACCCTTTCCCTATCGGTCGAGCTATTTCAAAAGCGGGTT
CGCCAGGACCTACTAGTGATAGAAAGACGGATAATGTTTAATGAGGGTTGGAGACAGGTTTCGAG
TCGCCCAATTCAGTTGTCACGGTTTAATGGTGGTAAATCTATAGTCCAGAGGTGGGTCTCGACTG
ACTTTCCTTTAAGAGGGTGCCTTTTTTTCGTAGCAGAAAGAGGGCTTGGGCAACTAAATCACGTT
CGTACGAAAACGAGTTGGAATACTCTTTCCGATAGGGAAGCCGGGAGCGAAAGCCAACAGGCGAG
GGTTTTGAATTCCAGAGTCTCAGCCGTAAGGGAACGAACTACATAGGATTCTCCAGCTTTTGATC
TTAGAAGGCGACCCAAGGGAGGGCTGTGACTTATACGAGTGACCA
Right flanking sequence: Indices 497348 -- 497847
TCCTGACAAGGTCAGTCTCAAAGACCCAGACTCTTTCGAATCTGTTTACAACCCACTACTCTTAG
AGGTCTGTCGTAAACCCTTATACGAGCAACTCCGTGCCTTGGACTATCGGTCACGCCTCTTGCTA
AAGTAAAGGCCATCTCTATCTACTGATCGGGGCTCTCTCTTTACTACCAAAATGCCCTTTCTAGT
TTTTGATCTTGGCTCATCAGAAGGCTTAGCTATTCTCTCTCTTATTTATGTAAATTCATTAGAAA
GACCCGTACCCTATCCCTCGAGCTGCCGGCTTGGTGTGAAGTGATCATAGCCTGGGCTTAGTGGA
GTCCTTACGATTTTATGAAAGATCGAATGCGACTGGGATCACGGAAGGCTAGCGTTATGCTTTAC
TCTACCTATCGAATCTTCAAAGCGTAAGAACTGAGCTACTTCGTTCCTTTTCATCTTTAATAACG
TGTTCAGTTAGAAGAGCAAATCCCCCTCTCCAACCCCCCAAGGGG
Found at i:532539 original size:25 final size:25
Alignment explanation
Indices: 532494--532541 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
532484 GAAGCGAGAC
*
532494 TCGACTGTTAAGGACCCAGAGGGGA
1 TCGACTGTTAAGGACACAGAGGGGA
* *
532519 TCGACTGTTAAGGAGAGAGAGGG
1 TCGACTGTTAAGGACACAGAGGG
532542 AAGCACAAGG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.29, C:0.15, G:0.40, T:0.17
Consensus pattern (25 bp):
TCGACTGTTAAGGACACAGAGGGGA
Left flanking sequence: Indices 531994 -- 532493
CGCATTCGCTGCATCTGAAGGGACGATTTCAGATAGGTAGGTTGGGTTGCTCGTTGTGGTTGCCC
GGACCTCGATCTAGATCCAAGATAAACCAAAAGCATGGGTCGTGGTCGGCAGATATATATGATTC
TGCCGGGGCTTGGGCTTGACTTCTTTCTTCATGAATGATTTTGGAGAAGCCTGCCTCGAGAGAGA
CATATGGCATATCTGACTGCCTGATTGGCGAGCAGCTGTCCTCATTCATAAGTCCAAAGAACTAG
CAACCAAACTGGTCGCAAGCAGGAGAGTGACCAGGCCTGATACTGATTGAAACGTTTATTTAATT
GGAAGCCGTTCAGATAGCCCTAATTAGTTTTAATTAGTTTAGTCAATGTTGAGCTGTCATATCTA
GCTGCCATATATGTAAACATGCCCTAAAAGTAAAGGGATCATATTTCCTTTAGTAACCACTTTTA
CCCATCCGCTCTTCTCCTGACCGATTGGAGGAAGAGAAGCGAGAC
Right flanking sequence: Indices 532542 -- 533041
AAGCACAAGGTTGGTGACCCGGGGGAAAGCGAATGCAGATCTCACGCAAAGTGAAATCTCAAGAT
TCAGATTGGGTTTGTGTTCGGTGTGGAGTAGATAGGGCTATTCCTTAGCAAGGCTATTCAGTAAA
GGCGAGAAGGGATCTATAGCAAGGGCAGCCCGGGTCTACCCAAAGAAAGGCAGAGTTGAGGAAGA
TAGATCAAACAGCCTTAGCGCTTTAGCTTGAACTGTAACCTTACCCTCGCTACTGACCTGTCGCT
TGGCCCGAAAGACTGGAACTAGAAGTCAACTGTGCCTAGACCTCAATCAATACGCTTACTGAGAG
TACCGGTACCAGAACAAGAACAAGGATTTCTCTTTGGTCAAAGCCGCCGCACTTGAACCGTAACC
AGCTAATGCATCGCCTTCTATCTGCATTTCTAAGACCAGTCCCTTATTCTGCTAACCAATTAGGT
TGGTTCATCAGGTGCCAAGGCATCTCTTTCTCCCAGGTCCCATCT
Found at i:534422 original size:22 final size:22
Alignment explanation
Indices: 534396--534440 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
534386 TAGTGGAGCC
534396 TTCGTGTACCAATTTCAGTGGT
1 TTCGTGTACCAATTTCAGTGGT
534418 TTCGTGTACCAATTTCAGTGGT
1 TTCGTGTACCAATTTCAGTGGT
534440 T
1 T
534441 GAGTTTCGCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.18, C:0.18, G:0.22, T:0.42
Consensus pattern (22 bp):
TTCGTGTACCAATTTCAGTGGT
Left flanking sequence: Indices 533896 -- 534395
TCCGTTGGGACGGGAACATGTATCCCTCCCAACCAAAAATATTTTTGTCTAAATCAGCTTTCGGC
CTATCGATTTAACCGGGAGCTGCTGTTGAGCACTCTTTCCATCACCGGATTCCCTATGCGCTGAT
TGATGCTTCCTCTCCGACTCGATGAGACCACACTACTGAGTGAGCTTCTTTCTGGCGCTCTTCCT
AGGATTCCTAATGCCTCTTGCTTCAACACAGAATAAGGTCTTTTCTCGGCCACTTTGTCATGAAA
TGAAAGCACAGTGAGTGAGTCTTCTTTCCGAGTCGAGTACTAGGCAGTCAATGTAGAGTTCACTT
CATTTGTCAGACTCCCGGTACCGAAGCAAAGTACTCATCCGAAAAGACGGTTTGATCATGCCCTT
TGTCCTCAACCCATGGTTCTCCTATATCTCCTAACTTTCGCTTTGCTTTCTCTTGAGCCCGCATT
TCGTGTTTTTTAAGATATTAAGAGGTGAACCCGCATAGTGGAGCC
Right flanking sequence: Indices 534441 -- 534940
GAGTTTCGCACTCCCGTCATCTTCCTCTTCTTTTTGGAAAATCCCAAATAGTCATCAGAAACAAG
CTAGCCGAGCATTGATTTGGGTGTGGGTGGGGTATGGTGCCCCAACGGATGGATCTCCATCAACA
TGGGATTTTTCCGAGGGGATCAATGTCTGGTCGAACCAAGCTTCCTTCTCTCTCTCTTGCTTCCC
CACCTGTGACTGAAGCTTCCACATGAACTTGACTTTCCTATCTGAGTAGACCGAAAGTTCTACTT
TTTGGGAGGGACATTAAAAAGGTAGCTTTCTCCCTGGTCGATCAGTCGTTCAATCCTTTCCTCTT
GATCAAATGCATTTCTAAAAGATTCTCACAACACAATGGACTCCAATACTGAACTGAGACGGACC
CAGACCCCCTACCGAAAGGGCTCTGTACCTATATGTTCTTTATCTCAAGCGATAGCTTTCAAGTG
CCCGACCCTCTTCCCTTGATCAATGAGTGAGAAAGCAATAGCCAG
Found at i:573764 original size:14 final size:14
Alignment explanation
Indices: 573745--573773 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
573735 GGCTTACTGT
573745 TTAGGTAGGATAGA
1 TTAGGTAGGATAGA
573759 TTAGGTAGGATAGA
1 TTAGGTAGGATAGA
573773 T
1 T
573774 GGATGTAGTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.34, C:0.00, G:0.34, T:0.31
Consensus pattern (14 bp):
TTAGGTAGGATAGA
Left flanking sequence: Indices 573245 -- 573744
GCAAGGACCCGCAACTCTCGAAGGGGCCACCCACCGCCCGATGTAGCGATGTAGCAAATCCTCCC
TTTACTCAATGTACCGCGCTTAGCCTCTTTCAATCAAGGGAAAAAAAAAGAGTGACGAACCCGGT
CATAGGTTGGTCCAAAGAACGAGAGTCGGCTTCCTTAAGGGAGTTCTTCCTCAGTAGCTCAGTGG
TAGAGCGGTCGGCTGTTAACTGACTGGTCGTAGGTTCAAATCCTACTTGGGGAGAATTTTGAGTT
ATCGCTTTTCTGACGCCTGTTTTTCTCTTTAGTTTCTAAACTAGCAGAATCGTGGGACATCAAAA
GTGGGAAGTTGATTGTAGGGTTTTATTCTTCACTCTCGTATAGGTGAACTTGGTTCGTTCAATTC
TTAGGGAAAAGGAAGGATCCACTGTGAATGAATGGGAAGACTGGAGTAGTATCTTCATTAGCCGG
AAGGACTCCACTAGCTCGAAGAACGAACAAGAAAAGGCTTACTGT
Right flanking sequence: Indices 573774 -- 574273
GGATGTAGTCCAATGGCTAAAGCTCTGCCAGCTTCTTGTAGACTGAACTCTCTTCTCTTTAGGTT
CCGAGTTGCTTTTTTTGGGGTAAGATTTTTCTTCGCCACTAGTACCAACGAAGTTCTTGGTTATT
TGAAAGGAGGAAGGAAGATCTCCACTCATTTCATTCATTCAGTGCCTACGGCGAGGCGCGACCCA
CAACAAACAAAGGCAACTTCGTTGCTTGCTGTAGCCCTCTTTTAGTAGACTAGGCTGAGTAAGCG
TAAGCTATTTAAGTAGGCAGGGTAGGCTCGCAGCTTCGCCAGAAGCGACTAGTCGCCTCCTTTCC
TCCGCCGAAAGATGCTTAGCCAGAAGCGACGAAGGGGGGGCGTCGGGAAGGCCGACGACTACATG
ACATGAGGGAGAAGCTGTCGTAGAAGCTTTGCCCCTTGCTTTACAGAGATTGTTATGAACTGACT
AAATGACTAGATTCTCCCGGCTAAGCTAATAAATAGTATTTGTTC
Found at i:694289 original size:20 final size:19
Alignment explanation
Indices: 694252--694290 Score: 51
Period size: 20 Copynumber: 2.0 Consensus size: 19
694242 CAACCCGCCG
* *
694252 GTCAAGGATAGCTGTTGGA
1 GTCAAGGAGAGCTATTGGA
694271 GTCAAGGTAGAGCTATTGGA
1 GTCAAGG-AGAGCTATTGGA
694291 ATTCTATCCG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 7 0.41
20 10 0.59
ACGTcount: A:0.28, C:0.10, G:0.36, T:0.26
Consensus pattern (19 bp):
GTCAAGGAGAGCTATTGGA
Left flanking sequence: Indices 693752 -- 694251
GAAGCAGCCTACGACTTTATTCAACTTTTATGTTATAGCGAATAATTTCATTATTTTGTTGGCTT
TTGCTAACTATATCAATAACGACACTGGGGGTGGTGGCTCGTCGGTGTCAGGAATGAATTGGTTC
CAAGGAGTACCTCCCGGCATTAGGGATCCGCCCTTGAAAGAGAGAGTGCCATTGAATTCGTTTTG
ATCTTTTCTTGTATTATTTATGTTCCTGATGTGAGTCAATTCCCTAAGTGTTTCACGTACCTGCT
CATTCGTACTAGATTTTTTTGAATGCGTCTGTAGCCGTGCAGCTAAATCACGGAGGATGGGTTGG
GTGGTGGACTGGACATCAAAAGGATTCGAGTTTTTCACTGAACTGGAAGAGGTTCGATTCCTATT
TGATGTTGTTAAGCCAAGAGCGCAAAGCGCATGGAGCAAATAAAGCTCATTAAACATCTAATTTT
CTTATTTTTATTTTCTCTTTTTCAATGGTTCAGTTCAACCCGCCG
Right flanking sequence: Indices 694291 -- 694790
ATTCTATCCGGATTTCTTCTTTTATTGCAAATAGTTGCACTAACTTAGTCCATGTTCAATTAGCT
TCTGTTGAATCATCAAAGAGCTTCTAGAATTTATATGTTTTCGTATGCCCATTGCATATTCATAT
TAGAAAGGAAAAGTGAAACGTATTCGATATGCGATTATCATAGTTGACATCGGAAGCACCTTACA
TTGTGAGTAGTGCATATCAACAACACACTTGGAACTTGGAACAACACCTGCGAAACCTTGCTGGC
TATGAACTCAAGAGCAGTCCTTTCATTCAATGATTTATGGGTTTTAAGATGATGCTTGTCACATT
CATGCGAAAGAACTTCACTCTGGCACGGGCTAGTCATATTCATTCTCGTTCTCAATCTGAAATCA
GAGACTCTCTCTGGGAAAGACAAAAAGCAGTTCTTTCTGGAAGCTCCGCAGCCGAACCATCAGCG
TTCATTGCCTGCAGGTCATTTCACCAATGTGTCACAGGTCAAAGG
Found at i:704511 original size:23 final size:23
Alignment explanation
Indices: 704484--704530 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
704474 ATGGGAATAA
704484 GATGTCAAAAGCATCTGCTTAGG
1 GATGTCAAAAGCATCTGCTTAGG
704507 GATGTCAAAAGCATCTGCTTAGG
1 GATGTCAAAAGCATCTGCTTAGG
704530 G
1 G
704531 TCAGATTGGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.30, C:0.17, G:0.28, T:0.26
Consensus pattern (23 bp):
GATGTCAAAAGCATCTGCTTAGG
Left flanking sequence: Indices 703984 -- 704483
TCCCCGGGACACAAACTGAATGAGTCAAGTCTAAGATCCCTCCTAAATGCAGCCGTGATCAACTA
TACGATGCCACTTGTTTGTCTAAAACCCATTTTCTAATTATAAATAGGCGCGGCTTGGAGCCTTT
GATAAGAAGAAAACCCCCTTCAAGCTACCTCTCCTTGAATGCGTAAATTCGATTCTTCCCCCCAA
AGCGCAGCCGAATTCCCTGTGTGAAGCATATAGTTTCTGAAGCCCAGTGAGCACTTTCAGACGAC
TGACTGAATCAAATAGGATAGGCGGGGGGTCAAGAGACGCATGTACCCAAGCTAGCATCCCTCCG
CCTGACGGCCCCTTCCTCGGCCGTAGTGAAGAAGGATTTAGAAGGCTTTTTGTTAAGCTTAAGCA
TAGTGTTTTTTTCTCTAAAAAGTCTCGAATTCCTCACCTTAAGTCAATCAGCTTAATTCCGAACA
GCTGACGAGAGCTCTAATGTCAAACCTGAAAGCGGATGGGAATAA
Right flanking sequence: Indices 704531 -- 705030
TCAGATTGGACTTTCTCTTTTGGCCCTGCTTGCCCCGAAAGCCTGATTCGGAGCTCTCTAAATCA
TTACGAAGTAGGGGTCTAGCTCAGCTCTAAGCCTAGGATAGGACCTTGTCCAGGAACCAACTTCT
TTCTATTTTTTTATAATGAGAACGGAGTCTCAGTAAACCGCGCTAAAGCCCACTCTCTAGCCCTA
AAGTCAAGGGTTTTCCCAGATTCATCTAATTTTTTTCTCTGTCCTACCTCCCCCTAAAAAAAAAA
AGGAAAGGATAAGCTTGCATTCTAGAAGCGGTAGCTTCCCGCCTCCTTCATTCCTACTGCCCCCT
TCGGTGAGAAGTTCCCTTCCCTTTTCTAAAATGCCAAATAGGTCTGCCTCAGAAAATGTAAAAAA
TGGACCGCTCTTTCCCTCCCTCTTCTTCCCATTCGGGTTGGGTTTACCCAGAAGTCAAGTAAGAA
GGAATGGAACCACTGGAGAGTCGTCTGCAGTTCACACTTGGGCAA
Found at i:725293 original size:28 final size:28
Alignment explanation
Indices: 725262--725319 Score: 116
Period size: 28 Copynumber: 2.1 Consensus size: 28
725252 TATATATATT
725262 TAACATTATAAGAAAAGATATTAATAGA
1 TAACATTATAAGAAAAGATATTAATAGA
725290 TAACATTATAAGAAAAGATATTAATAGA
1 TAACATTATAAGAAAAGATATTAATAGA
725318 TA
1 TA
725320 TCGGTAGTTG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.57, C:0.03, G:0.10, T:0.29
Consensus pattern (28 bp):
TAACATTATAAGAAAAGATATTAATAGA
Left flanking sequence: Indices 724762 -- 725261
GCTCCGATAACGCAATTCCGGGAGGAGTCGGTAATTGGGCACTGGATCCCTTCGGACCTGGAAAA
CGTGTAACGCTGGGTCGGGGTTTGGTGAACCAACTGGTCGCTCTTCTAGTTGAAGTATCGGGCCC
CTTTTTCGTTGTCTAGGTTACACCTTCGGAATACCCCAGAAAGGGAATTCTTATCTACTTCCCGT
GATCTTCACTTTACGCCACACCGACTCCCTTTTCGAAACGTCATAAGGCGTGGAATTAGACCAAG
GGGAATCTCCATAGGAACTAGTCCCTCAGATTTCGCACGTAGGAGATCGAGACACAGCCCCAGGG
CTATGGGGAAAGATGTAGATCGATCGCCCTAGATAGACAACTACATAGAGGGTCTCTACAAGTCT
ATATATTCTTAGATTTCGTTCCCCCCGTGACGATCAATATCACAACCAATGAGGTCTGCAAGTTT
CACATCTAAGTAATACCCGATCCGGTAGTTTACGATATATATATT
Right flanking sequence: Indices 725320 -- 725819
TCGGTAGTTGTCCGGTCGTACCCAAACAATAAGATTCCAGAGGGAAATGCACCTAAGATCAAATA
TTTCGAGCCGGCTTCCGTGGAAAATTCAGACTTTCTTTTTGATGCTGCGATCACATAAAAACATA
AACTTTGAGGCTCAATAGCTAAATACATGGCAATTGAATCATGAGCCGAGATCATAAAGAGCATA
CTGCGAGTAGGAAGTAGAATTAATACAATGAATTCAAAAGCATCAAACCTCTCTTGTTCGGAAGA
ATCGAAACACATCGAAATGGTACCAGCCGTACTTAATAATAGAAGGATTTGGCAGAAATATGTAA
AATTGTCCCTCCTAAAAAAATTATTCCAGAATAAATGGGCAATAGTTAGGAGAGGTGCGCCAGCG
GCGAGCAGAAGCAAGGTTATTAGATACCTCAGGAAAGCCCGGCCAGAACCACACGTGCAAGTTTC
CCTGCATGTGGCTCGTCCGTGATAACTTCTTCGGATTTGCGTGAA
Done.