Specifications
==============

Sequence source file: "/mnt/biodata02/home/xyzhang/pmgdraw-test/test_set/outdir_mt3/NC_058733.1/NC_058733/Repetitive_sequence/123.misa.ini"

Definement of microsatellites (unit size / minimum number of repeats):
(1/10) (2/6) (3/5) (4/5) (5/5) (6/5) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              1
Total size of examined sequences (bp):           608983
Total number of identified SSRs:                 75
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    3


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	67
2	6
3	1
4	1

Frequency of identified SSR motifs
----------------------------------

Repeats	5	6	7	8	9	10	11	12	13	14	15	16	17	total
A	-	-	-	-	-	21	14	2	1					38
C	-	-	-	-	-		3							3
G	-	-	-	-	-	1								1
T	-	-	-	-	-	17	4	1	2				1	25
AG	-	1	1											2
GA	-	1												1
TC	-	2		1										3
TAG	1													1
CTTT	1													1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	5	6	7	8	9	10	11	12	13	14	15	16	17	total
A/T	-	-	-	-	-	38	18	3	3				1	63
C/G	-	-	-	-	-	1	3							4
AG/CT	-	4	1	1										6
ACT/AGT	1													1
AAAG/CTTT	1													1