Specifications
==============

Sequence source file: "/mnt/biodata02/home/xyzhang/pmgdraw-test/test_set/outdir_mt3/NC_049064.1/NC_049064/Repetitive_sequence/123.misa.ini"

Definement of microsatellites (unit size / minimum number of repeats):
(1/10) (2/6) (3/5) (4/5) (5/5) (6/5) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              1
Total size of examined sequences (bp):           482114
Total number of identified SSRs:                 25
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	14
2	6
3	3
6	2

Frequency of identified SSR motifs
----------------------------------

Repeats	5	6	7	8	9	10	11	12	13	14	total
A	-	-	-	-	-	3	1				4
T	-	-	-	-	-	5	4			1	10
AT	-	2	1								3
GA	-	1									1
TA	-	2									2
AGA	1										1
ATA		1									1
TAA	1										1
CCTTAA				1							1
TATTCC							1				1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	5	6	7	8	9	10	11	12	13	14	total
A/T	-	-	-	-	-	8	5			1	14
AG/CT	-	1									1
AT/AT	-	4	1								5
AAG/CTT	1										1
AAT/ATT	1	1									2
AACCTT/AAGGTT				1							1
AATAGG/ATTCCT							1				1