Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_065237
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 302947
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.27
Found at i:39523 original size:39 final size:39
Alignment explanation
Indices: 39480--39557 Score: 147
Period size: 39 Copynumber: 2.0 Consensus size: 39
39470 TCTTCACTTT
39480 TTTGGTGAAGAATGAAGAAGGACATAAACTTTGTTAATG
1 TTTGGTGAAGAATGAAGAAGGACATAAACTTTGTTAATG
*
39519 TTTGGTGAAGAGTGAAGAAGGACATAAACTTTGTTAATG
1 TTTGGTGAAGAATGAAGAAGGACATAAACTTTGTTAATG
39558 AAAAACCCTT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.37, C:0.05, G:0.27, T:0.31
Consensus pattern (39 bp):
TTTGGTGAAGAATGAAGAAGGACATAAACTTTGTTAATG
Left flanking sequence: Indices 38980 -- 39479
TCAGTAGATCCTACACCCAAAGTACTCATATTCATACTTAACCAAGCTGGTTAATTCAATTCCAG
GAAAGGGGGAATCAACAGGCGCTAACCGATTCCAAAGAAAGCGGTTCCCTCATAAGCAAGTAAGA
ATCACATCAAGATAAGGAAGCTTGTCAGGTAATAGCATTTGGTAGTCTATCTCATCCGAACAACG
TGGAATGTGCTCATTGAGGGCTTTTTTCGTTTTGCGGGTATCATATGACCTGGAGGCTGCTATGG
TTCACGATCCTTATACAAGGACCCCCAGCAGGATCAAAGCTTTTTGTCCTGAGTCCCCCTAATCT
TATACGGCGAGTCTATTCAAAACTCATGTTCCTATTGCCTTTGCAATGATGAAACCTTGGTTCAC
TTTTTTAATCATCTAGATTACGTCGGTGTTCCTTGTACTTTAGTACAAGATCGAAAGGAATGCTT
TACATTACAAGTGGAACGAGGGGAAGAGTCTTTGATCTTCACTTT
Right flanking sequence: Indices 39558 -- 40057
AAAAACCCTTTTTTGTAATGAAAAAGCGCGACGATAATTCTAAAAAAGGATATGTTAGAAGGAGC
AAAATCAATAGGTGCCGGAGCTGCTACAATTGCTTCAGCGGGAGCTGCTATCGGTATTGGAAACG
TATTCAGTTCGTTGATCCATTCTGTTGCCCGAAATCCATCATTGGCTAAACAATCATTTGGTTAT
GCCATTTTGGGCTTTGCTCTAACCGAAGCTATTGCATTGTTTGCCCCAATGATGGCCTTTTTGAT
CTCATTTGTATTCCGATGTTTGTGATTCCCTTTTTGATCTCATTCGTATTCCGATGTTTGGGAAA
GAACTAAGTGAGTCTACCACTCAATTCGGGATGCTCCCCTAGGGGCGTATTCCACCTATAACTCG
AATAAGGAGGACGATGAACCCCGTCACGATCTACTAAGGGCAAAATAAACCCTTAGTGGATCACT
CTTTACGGCCCCCCTGCGGACCCTCAGATGTAGGAGGGGAAGGCT
Found at i:49378 original size:17 final size:17
Alignment explanation
Indices: 49356--49390 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
49346 TACTAATAAA
49356 AGGCAAGTCAACCACTG
1 AGGCAAGTCAACCACTG
*
49373 AGGCAAGTCAACCGCTG
1 AGGCAAGTCAACCACTG
49390 A
1 A
49391 AGCTGAAAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.34, C:0.29, G:0.26, T:0.11
Consensus pattern (17 bp):
AGGCAAGTCAACCACTG
Left flanking sequence: Indices 48856 -- 49355
CTTTCCGTTCGTTCCTACTATACTATATAGTAGAGTCACTTCGTCCCTCCATCGGGATAGGGCAC
TGGAAGAAAGTCTAGTTCTGAACCAAGAAGGCTAAAGGGTGTTAATGACAGAACCAGGGCTGAAC
TAGTCCTTCAGGATCCATTACGTGTCCTTTGGGGTTGATTTCATCCGGGAATGACTTCTACGATT
CAAGCGGTTTATGTACTTTTATATTCTAGTACCTCATGCCATGACATTTAGATGCAACTATCAAG
AGCCAAAGGTATCTATCCACATCAACTTAGCGGATATAAGAGGCAGGAGGGGTTCAGAAAGGTGC
CTTTTTGTTGGACTAAGAGGAGCGAAGCAAGTCGAACTATAATAAAGGAGAGGCGATATGTAATA
TCGATAAGAGGAGCGAAGCATCGGGAGAGGAGCGTCGAATAAGATATTCTATATCGGGAGAAGCT
AGGTCAAATGACCGGCTCATTAGGAATGTTTTTCCTACTAATAAA
Right flanking sequence: Indices 49391 -- 49890
AGCTGAAAAGAAGGGTTTAAACCACCCACTCCTGAGATACGATCATCCAGTCACTTCCTCTCCTT
GGCTGTCGTAGTTAGCTCCCTCTTATTCGATTCAACTACAACCTTGCTTCAATTGGATTTGATTC
TTGGCAAAGTCTCGATGTTGCTTAGGGATATTAGAGTCTTCCATGGGACAATAGTGACTTAGGTT
TCTCTCTTTCCTCGCTTCTTCCAAGTACAAATACAAGTTCATGGCCCTTGTCAATTCCTTAAGAA
AAGCATTGCTTTAGGACAATGGTAACCTCTAAAGGATTGATTAACGAGCTCTAAACCCTCTCCCC
TTTCAAATAGTAAAGCTCTTTCCTCACGGAAAGCCTCTCATTTCTTTCGAGTTACTGTGTCCCAC
GATCTTTAATTGAAGAATGGAATTCTCTATCACAAAGCTTAGCAAGCGGATCGCCATCTTATCTA
TCTTCTGCATCTGACATACCCTCAGGCTTATGAAGTCCCGTCTCA
Found at i:53175 original size:60 final size:61
Alignment explanation
Indices: 53080--53199 Score: 224
Period size: 60 Copynumber: 2.0 Consensus size: 61
53070 CGACGAAATC
53080 CGGCGGAGCCGCTGATTCCTTCTTTCCTCATCTTCAGGATCCTGATTGAGGTCAGGAATTAG
1 CGGCGGA-CCGCTGATTCCTTCTTTCCTCATCTTCAGGATCCTGATTGAGGTCAGGAATTAG
53142 CGGCGGA-CGCTGATTCCTTCTTTCCTCATCTTCAGGATCCTGATTGAGGTCAGGAATT
1 CGGCGGACCGCTGATTCCTTCTTTCCTCATCTTCAGGATCCTGATTGAGGTCAGGAATT
53200 TGTGGCGGCC
Statistics
Matches: 58, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
60 51 0.88
62 7 0.12
ACGTcount: A:0.17, C:0.26, G:0.25, T:0.32
Consensus pattern (61 bp):
CGGCGGACCGCTGATTCCTTCTTTCCTCATCTTCAGGATCCTGATTGAGGTCAGGAATTAG
Left flanking sequence: Indices 52580 -- 53079
GAAAGTAATAACGAAAATGGCTAACCCAATAGCAGATTCCGCAGCTGCCACCGTTGGAACCAATG
AAGCAAATGATTGACCCATCATATCATCCGAAGAAACGGAAAATACCAAAAAGTTCGAATTCACG
GCTAATAACATTGATTCAATTGGCATTGACATAATAGGAATATTTCGTCTATTAAGGAGGATTCC
CCGAATACCTAAAATAGAGATGATCATAGAAAATGTGAAATATTTTATAAGATCCGTTTCGGAAA
CGTAGAATGTCAGAGAAATTCAAATGTTATAACTCCCCCCAGTACGTCAGGAAACCCCAGCTTCT
TACAACTTCACATTATTTCCGCCGCTCGCGGTCTTTCAAATACTGTGGCAGGTTTTTAAAATAGA
CATAGAACTGGTGAAGCCTCTTCCGAACGAGGAAGCTTTCACGTAGTTTGTCTATTTCTTCGGAA
GTCGCTTTTAGCTCCGCCTCATATTCGTCGAATAACGACGAAATC
Right flanking sequence: Indices 53200 -- 53699
TGTGGCGGCCGGGGAAAAAGCCTTTCCCTCAGAGAGGCAAGTTTCTGAGCCGGATCATCGTTGAG
ATCACTGGTGGGGATTCTTGGGCGTGACGGCCCGGCCTCGTCTTTCCCCCCGGCTACTCCATCCC
CCGACTCGAGGATACTCTTTCCTTTCCCCCCGGCTACTCCATCCCCCGACTCGAGGATACTCTTT
CCTTTCTCCCCACCTACCCCATCCAAAGGGACCCCTTCCATAAGAGAAAGGAGGTTATTTATAAA
ATCCGTGGATGGAGTAGATAGCATTGCAAAGATAGCAATCCAAAACAACAAATTGATGACTCTTA
CCGATATCGAATTTCCTTTTCGTGCCATATGCGCTTAGACTTGACTTTACCCCCTTTTCTTTTCT
TCCCGGTCCAATATTTGTTCTCGAAAGCGGATCGCCGCGAGTCCCCTTTCTACTCGGAATCAAAC
GCCAATTTTCCTTTGAAGTTCATTTTTCAGACTATTGCTGAAGAG
Found at i:53225 original size:60 final size:60
Alignment explanation
Indices: 53101--53226 Score: 153
Period size: 60 Copynumber: 2.1 Consensus size: 60
53091 CTGATTCCTT
* ******
53101 CTTTCCTCATCTTCAGGATCCTGATTGAGGTCAGGAATTAGCGGCGGACGCTGATTCCTT
1 CTTTCCTCATCTTCAGGATCCTGATTGAGGTCAGGAATTAGCGGCGGACGCGGAAAAAGC
* * * *
53161 CTTTCCTCATCTTCAGGATCCTGATTGAGGTCAGGAATTTGTGGCGGCCGGGGAAAAAGC
1 CTTTCCTCATCTTCAGGATCCTGATTGAGGTCAGGAATTAGCGGCGGACGCGGAAAAAGC
53221 CTTTCC
1 CTTTCC
53227 CTCAGAGAGG
Statistics
Matches: 55, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
60 55 1.00
ACGTcount: A:0.19, C:0.25, G:0.26, T:0.30
Consensus pattern (60 bp):
CTTTCCTCATCTTCAGGATCCTGATTGAGGTCAGGAATTAGCGGCGGACGCGGAAAAAGC
Left flanking sequence: Indices 52601 -- 53100
TAACCCAATAGCAGATTCCGCAGCTGCCACCGTTGGAACCAATGAAGCAAATGATTGACCCATCA
TATCATCCGAAGAAACGGAAAATACCAAAAAGTTCGAATTCACGGCTAATAACATTGATTCAATT
GGCATTGACATAATAGGAATATTTCGTCTATTAAGGAGGATTCCCCGAATACCTAAAATAGAGAT
GATCATAGAAAATGTGAAATATTTTATAAGATCCGTTTCGGAAACGTAGAATGTCAGAGAAATTC
AAATGTTATAACTCCCCCCAGTACGTCAGGAAACCCCAGCTTCTTACAACTTCACATTATTTCCG
CCGCTCGCGGTCTTTCAAATACTGTGGCAGGTTTTTAAAATAGACATAGAACTGGTGAAGCCTCT
TCCGAACGAGGAAGCTTTCACGTAGTTTGTCTATTTCTTCGGAAGTCGCTTTTAGCTCCGCCTCA
TATTCGTCGAATAACGACGAAATCCGGCGGAGCCGCTGATTCCTT
Right flanking sequence: Indices 53227 -- 53726
CTCAGAGAGGCAAGTTTCTGAGCCGGATCATCGTTGAGATCACTGGTGGGGATTCTTGGGCGTGA
CGGCCCGGCCTCGTCTTTCCCCCCGGCTACTCCATCCCCCGACTCGAGGATACTCTTTCCTTTCC
CCCCGGCTACTCCATCCCCCGACTCGAGGATACTCTTTCCTTTCTCCCCACCTACCCCATCCAAA
GGGACCCCTTCCATAAGAGAAAGGAGGTTATTTATAAAATCCGTGGATGGAGTAGATAGCATTGC
AAAGATAGCAATCCAAAACAACAAATTGATGACTCTTACCGATATCGAATTTCCTTTTCGTGCCA
TATGCGCTTAGACTTGACTTTACCCCCTTTTCTTTTCTTCCCGGTCCAATATTTGTTCTCGAAAG
CGGATCGCCGCGAGTCCCCTTTCTACTCGGAATCAAACGCCAATTTTCCTTTGAAGTTCATTTTT
CAGACTATTGCTGAAGAGCTCTTTATGTGGTCTCACCACCATCTG
Found at i:53370 original size:45 final size:45
Alignment explanation
Indices: 53306--53405 Score: 191
Period size: 45 Copynumber: 2.2 Consensus size: 45
53296 CCGGCCTCGT
53306 CTTTCCCCCCGGCTACTCCATCCCCCGACTCGAGGATACTCTTTC
1 CTTTCCCCCCGGCTACTCCATCCCCCGACTCGAGGATACTCTTTC
53351 CTTTCCCCCCGGCTACTCCATCCCCCGACTCGAGGATACTCTTTC
1 CTTTCCCCCCGGCTACTCCATCCCCCGACTCGAGGATACTCTTTC
*
53396 CTTTCTCCCC
1 CTTTCCCCCC
53406 ACCTACCCCA
Statistics
Matches: 54, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 54 1.00
ACGTcount: A:0.12, C:0.48, G:0.12, T:0.28
Consensus pattern (45 bp):
CTTTCCCCCCGGCTACTCCATCCCCCGACTCGAGGATACTCTTTC
Left flanking sequence: Indices 52806 -- 53305
AATGTGAAATATTTTATAAGATCCGTTTCGGAAACGTAGAATGTCAGAGAAATTCAAATGTTATA
ACTCCCCCCAGTACGTCAGGAAACCCCAGCTTCTTACAACTTCACATTATTTCCGCCGCTCGCGG
TCTTTCAAATACTGTGGCAGGTTTTTAAAATAGACATAGAACTGGTGAAGCCTCTTCCGAACGAG
GAAGCTTTCACGTAGTTTGTCTATTTCTTCGGAAGTCGCTTTTAGCTCCGCCTCATATTCGTCGA
ATAACGACGAAATCCGGCGGAGCCGCTGATTCCTTCTTTCCTCATCTTCAGGATCCTGATTGAGG
TCAGGAATTAGCGGCGGACGCTGATTCCTTCTTTCCTCATCTTCAGGATCCTGATTGAGGTCAGG
AATTTGTGGCGGCCGGGGAAAAAGCCTTTCCCTCAGAGAGGCAAGTTTCTGAGCCGGATCATCGT
TGAGATCACTGGTGGGGATTCTTGGGCGTGACGGCCCGGCCTCGT
Right flanking sequence: Indices 53406 -- 53905
ACCTACCCCATCCAAAGGGACCCCTTCCATAAGAGAAAGGAGGTTATTTATAAAATCCGTGGATG
GAGTAGATAGCATTGCAAAGATAGCAATCCAAAACAACAAATTGATGACTCTTACCGATATCGAA
TTTCCTTTTCGTGCCATATGCGCTTAGACTTGACTTTACCCCCTTTTCTTTTCTTCCCGGTCCAA
TATTTGTTCTCGAAAGCGGATCGCCGCGAGTCCCCTTTCTACTCGGAATCAAACGCCAATTTTCC
TTTGAAGTTCATTTTTCAGACTATTGCTGAAGAGCTCTTTATGTGGTCTCACCACCATCTGAAAT
GGGCGAAACTTCGATTGGTGGAAGCCAGTCTATGAAGATTCTCCCTTTTCTTACGTGCAATTCCC
CTCTTTCGGTAAGCATCCAGTATCTCATCAAATGAACATTTCTCTAAGCTTATCCTGTAGCTTAT
ACGTCGTTTGAAAGCTGCTTCAAGGATCCAACGAATAGCTAAAGT
Found at i:53417 original size:45 final size:45
Alignment explanation
Indices: 53306--53418 Score: 172
Period size: 45 Copynumber: 2.5 Consensus size: 45
53296 CCGGCCTCGT
**
53306 CTTTCCCCCCGGCTACTCCATCCCCCGACTCGAGGATACTCTTTC
1 CTTTCCCCCCACCTACTCCATCCCCCGACTCGAGGATACTCTTTC
**
53351 CTTTCCCCCCGGCTACTCCATCCCCCGACTCGAGGATACTCTTTC
1 CTTTCCCCCCACCTACTCCATCCCCCGACTCGAGGATACTCTTTC
* *
53396 CTTTCTCCCCACCTACCCCATCC
1 CTTTCCCCCCACCTACTCCATCC
53419 AAAGGGACCC
Statistics
Matches: 64, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
45 64 1.00
ACGTcount: A:0.13, C:0.50, G:0.11, T:0.27
Consensus pattern (45 bp):
CTTTCCCCCCACCTACTCCATCCCCCGACTCGAGGATACTCTTTC
Left flanking sequence: Indices 52806 -- 53305
AATGTGAAATATTTTATAAGATCCGTTTCGGAAACGTAGAATGTCAGAGAAATTCAAATGTTATA
ACTCCCCCCAGTACGTCAGGAAACCCCAGCTTCTTACAACTTCACATTATTTCCGCCGCTCGCGG
TCTTTCAAATACTGTGGCAGGTTTTTAAAATAGACATAGAACTGGTGAAGCCTCTTCCGAACGAG
GAAGCTTTCACGTAGTTTGTCTATTTCTTCGGAAGTCGCTTTTAGCTCCGCCTCATATTCGTCGA
ATAACGACGAAATCCGGCGGAGCCGCTGATTCCTTCTTTCCTCATCTTCAGGATCCTGATTGAGG
TCAGGAATTAGCGGCGGACGCTGATTCCTTCTTTCCTCATCTTCAGGATCCTGATTGAGGTCAGG
AATTTGTGGCGGCCGGGGAAAAAGCCTTTCCCTCAGAGAGGCAAGTTTCTGAGCCGGATCATCGT
TGAGATCACTGGTGGGGATTCTTGGGCGTGACGGCCCGGCCTCGT
Right flanking sequence: Indices 53419 -- 53918
AAAGGGACCCCTTCCATAAGAGAAAGGAGGTTATTTATAAAATCCGTGGATGGAGTAGATAGCAT
TGCAAAGATAGCAATCCAAAACAACAAATTGATGACTCTTACCGATATCGAATTTCCTTTTCGTG
CCATATGCGCTTAGACTTGACTTTACCCCCTTTTCTTTTCTTCCCGGTCCAATATTTGTTCTCGA
AAGCGGATCGCCGCGAGTCCCCTTTCTACTCGGAATCAAACGCCAATTTTCCTTTGAAGTTCATT
TTTCAGACTATTGCTGAAGAGCTCTTTATGTGGTCTCACCACCATCTGAAATGGGCGAAACTTCG
ATTGGTGGAAGCCAGTCTATGAAGATTCTCCCTTTTCTTACGTGCAATTCCCCTCTTTCGGTAAG
CATCCAGTATCTCATCAAATGAACATTTCTCTAAGCTTATCCTGTAGCTTATACGTCGTTTGAAA
GCTGCTTCAAGGATCCAACGAATAGCTAAAGTTTGTTGACGATCC
Found at i:88527 original size:19 final size:19
Alignment explanation
Indices: 88503--88540 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
88493 GAATTACTAT
88503 AACAAGTAAGCAAGTAAAC
1 AACAAGTAAGCAAGTAAAC
88522 AACAAGTAAGCAAGTAAAC
1 AACAAGTAAGCAAGTAAAC
88541 TGCCTCGGGC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.58, C:0.16, G:0.16, T:0.11
Consensus pattern (19 bp):
AACAAGTAAGCAAGTAAAC
Left flanking sequence: Indices 88003 -- 88502
AGATAAGAAACTTGAGAGGATCGACGAACCTGAGAGAGGGATCCAGAATCTGAGGAAGCGACTGG
AGGGGAAACAACTGGGCTAGACTGCTGATCTTCCGGAGTCTGGGAAAAATAAAAAAAAAAATAAT
AATGTAATCGCCGCCGGGAATAAACATGCTGTGCCGGGTGACTGGAATCCTCTGAGATCAGCTGA
ACAGGCTGACAATAGGAAGAAGATGCTGGGCAAAGCTGCTGGCCTAAAGAGTGAGGCTGATCCGT
AACATCAACTGCAGAAGAATGAGGTTCGAGTTGATGAACAAGAGAAGGCCGCAATACATCTCCAT
CAAATTCTCCCCTTAGAGAAAATATGAGGTTAAAGTAAAGTAAAGAGAACATTCAAGGTAGCTTG
CTTACTTAGTGCTTGCGCTAAGGATACATCGCGTCTCTTGGATTTCACGGCATAGCATCTATACC
CGGACTGAGCATATCCAAGAAAGACACAAGGGGTTGAATTACTAT
Right flanking sequence: Indices 88541 -- 89040
TGCCTCGGGCACAATTTTTCTCTTAACTGCGCAGGCAAAACACGTGCATCCAAACACTCGCGCCT
ATAGGATGGTGCTGCCCCAGTAAGAAGTTCATGAGGTGCCGCTGCATCTTATTCCCCCCCCAAAA
AAAAAGGGAGAAAGATGCCCCGTCCCTTCTTTATGCACATCCATATACATAGCCAGACACAAAGG
TGTACAATCCGGTCAAAATCTGCGGTTCTTTAAATTCATTCACTGTAGGGTCTCTTACTTGCTCT
AGTGGCTGGAAAACGCCAACCGAGAGGCGCCAACGGCGGGCTCAGGAATCGACTGGTTCCGAGTG
GACTCGTGGAGCTGCTGCTTGGATTATCGTAGAGTAAGAGGAGCGTTAGGAAATGACTTAACTTA
AAAAACAGATGCCGCCGCTGCGAGGCGAGGAAGTCACTTGTCTGGTCTTGCGGTGCACCCACCCC
CGTCTCGAGAATTAAATCACGCCCTAGCTCGACTCGAGACCAAGA
Found at i:124379 original size:22 final size:22
Alignment explanation
Indices: 124352--124403 Score: 86
Period size: 22 Copynumber: 2.4 Consensus size: 22
124342 TTATTCACTT
*
124352 CCTCACTTTGTTTACTTCGTAA
1 CCTCACTTTGTTTACTTCGCAA
*
124374 CCTCACTTTGTTTGCTTCGCAA
1 CCTCACTTTGTTTACTTCGCAA
124396 CCTCACTT
1 CCTCACTT
124404 CTTTGACTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.15, C:0.33, G:0.10, T:0.42
Consensus pattern (22 bp):
CCTCACTTTGTTTACTTCGCAA
Left flanking sequence: Indices 123852 -- 124351
GCTGCATAAAAATTCTCTTTTCTCTTCACTGCTCCACTTCACTATGCTCAGTGCCTCAAGTGCTC
TAAGTGCAATTCTGGACTCGAACTAAAAATTAGGATGTCATCAAAGTACACCACCAGAAAAATTC
CAATAAATGGTCGAAGCATCTCGTTCATCACTCTCATAAAAGCGCGCGGGCCAAAAGGCATGACC
GGCCACTCATATAGGCGGGTTTTGAAGGCCGTCTTCCCCACTCCCTCTTCACTGCCTACTTCGTA
GCCTTCTCTAATTCGAATCCGGCGGTACCCGCTCTGCAAATCCAGCTTGCTAAAAACTGTAGCAC
CACTTAATTGATCCAGCAGGTCATCTAAACGAGGGATCGGAAAACCATGATCTTGTTGATGGCGC
GGCTGTCAACACACATACGCCACGATCCTTCAGTAAGCAAGGCAGGTACAGCATAAGGACTCAGG
CTCTCTCTAATGTGACCTCTTTGCCACTTCACTTCTTATTCACTT
Right flanking sequence: Indices 124404 -- 124903
CTTTGACTTTTTAACCGTTTTTGTTCATCTCTTGCAACAAGAAGTGGCACGGCCCCATCCATCTA
TAGATGTATGATCCGATCGCAACTTCGAATATGGGAGTTGATTCCAAAGCCCCTTTATTAGAATC
TGATGCAAGGCTGCTCATTGATCTAGGGTAGAAATCATAAATGACATAAAGAAGTGAATAAAGGC
GAGCTACGTATAACATCCAAGGCATTGATCGGCCCATGATCTCGGGATTGTCTCAAGCAAGAGAA
AATAATTAACTTGCAGAGAGGCTACGAAGTAGGCACTGAAAGTGTGCTGAACAACAACGCAGGCT
CCAATCAATGCCCAGGTCAGTTGCTCAGGAACTGCCATTCTAGGGGACACCCCATCGGCTTCTTA
TTCAGGAACTATGCTATAAGGGCACTTGGCCCGTCTTTACACTGAACACAGCGAAGTGGGAGACC
AACAGAAGAGGTGCTGAAGATGAATGCCAATCATACTCAATCAAA
Found at i:127869 original size:18 final size:18
Alignment explanation
Indices: 127846--127902 Score: 96
Period size: 18 Copynumber: 3.2 Consensus size: 18
127836 GTGTTCGTGC
127846 TTCATTCTTTCCTATGTG
1 TTCATTCTTTCCTATGTG
127864 TTCATTCTTTCCTATGTG
1 TTCATTCTTTCCTATGTG
* *
127882 TTCGTTCGTTCCTATGTG
1 TTCATTCTTTCCTATGTG
127900 TTC
1 TTC
127903 GTGTGTGTTC
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 37 1.00
ACGTcount: A:0.09, C:0.23, G:0.14, T:0.54
Consensus pattern (18 bp):
TTCATTCTTTCCTATGTG
Left flanking sequence: Indices 127346 -- 127845
TAAGACACATTGAGATGCTTTAAAACCGTTGTAACAGGGGCTTCGTGGATGATTTTACCTCACGA
GGGATTAAAGTGTCTTAAATCCCGCTGCGGTGGCATTCGGTCGCTCTTTGGTCAACTACCTACTA
CGGAGACCGTGGTTGTACCGCTTTATTTCATAACCTCACGGAAATCACTTCAAATAACCCCACTA
GAGCAGTTCTTAGTAGATTGGTCATTACCAGCCTCTCAGTTTGTATATTGACTTCTATCTCCTAT
ATAAACGGAAGTGATCATAGTTGTGTGTTCCAGGAAACTTCTTTGCACATGGAACCGCAAGAACG
AGGAGACTGAGAGAATTAACATTGCATTCACAGGAACGATGGAGCCCATCACCTTCACCTTCCTT
ATAGAGCCTTTAATCGTAAGGAGAGGGGGCATTTAGCAGCACTGTTTTCTGAAATTTCGTAAGAA
AAGCAACTTTAATACGTCCGAAAAGTCCCACCTATGTGTTCGTGC
Right flanking sequence: Indices 127903 -- 128402
GTGTGTGTTCGTGTCATAGACACGTTCATCGAGGCCGTGGTCGAGAAGGCTTTCGGCCGCGGGAG
TGGTGGGAAAGGTGGCGGGCCCCCTCTCAATGGCATTGAGATACTTTGGAACTAATTCTCTCTGA
AAGAAAGAAATTTGAAGATGTTTCAGAATATAAGAGATTTCTATTTAAACTTACAAATAAAACAC
AGGCCGAAGAGTGCTCTCAGTCCACGAGGGCATAAAAAGAATCCGACGCAGACTAGTATCGGGAT
TGACTCTCCCCTCTTTTTCCTAAAGCAGGGTTTACTTTTTGTCCTGAATAGGTAGCCCATATGGG
ACGTACCTTCTTAGGTATTGGTGCGTTAAGGTTGAATGGGGGGGGTGTAAAAAAAGACAATTTGC
TTCTCCTCAAAGGAAGTCATATGCTCTTTTTTAAGTGTGGTGTCCTCAACCTTCCCTAAAGTAAA
GGTAGGATCATGGATCCCATTTTATAAGAAGGCTGTGTAGTCTAA
Found at i:128596 original size:20 final size:20
Alignment explanation
Indices: 128571--128610 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
128561 ATTGACCCGC
128571 AATTTCACTTATCTGTAAGT
1 AATTTCACTTATCTGTAAGT
128591 AATTTCACTTATCTGTAAGT
1 AATTTCACTTATCTGTAAGT
128611 TCGCTAGCAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.30, C:0.15, G:0.10, T:0.45
Consensus pattern (20 bp):
AATTTCACTTATCTGTAAGT
Left flanking sequence: Indices 128071 -- 128570
TTCTATTTAAACTTACAAATAAAACACAGGCCGAAGAGTGCTCTCAGTCCACGAGGGCATAAAAA
GAATCCGACGCAGACTAGTATCGGGATTGACTCTCCCCTCTTTTTCCTAAAGCAGGGTTTACTTT
TTGTCCTGAATAGGTAGCCCATATGGGACGTACCTTCTTAGGTATTGGTGCGTTAAGGTTGAATG
GGGGGGGTGTAAAAAAAGACAATTTGCTTCTCCTCAAAGGAAGTCATATGCTCTTTTTTAAGTGT
GGTGTCCTCAACCTTCCCTAAAGTAAAGGTAGGATCATGGATCCCATTTTATAAGAAGGCTGTGT
AGTCTAAATAATGGGAGATACCTCTTAGTCACTGTTTCGAACTAATCATTCAATGAATGAACTTC
AAAGGGGGTATTTGAATGTGTAGAGGTCGGAGCTTCCTCTTACTACCATCGGTATCTTATTCAGT
GGATTTTCCAGCTCATAGATGTTCTTAGTCACTATATTGACCCGC
Right flanking sequence: Indices 128611 -- 129110
TCGCTAGCAGTCAAGGAGGATTTGGTTTGTTCGGAAAAGGAGTGCGGATCCAATAACAAGACGCC
CTTCTATAGCTAATCGCGGTATCTTCTCGAACGGTTAGAAATGACTATCTGCTTCTGTTACAACT
AAGTAAAATCCTCCCTGATTGAAAGACTAAAAGAACTACGAGGTGCAACTCGTAGCGGGCTTTAT
CTCATTTGAGAGTGAATTCTGCCATTCGGACAACTATTACATGCCAATCTCGGAATCCCCCTTTG
TAGCTCCGGTCTACGGCTCCTAATCAACTACACAAGTTCGCCATTGACAAAGTGTTCAGCGATTG
GGGCCCCCTTTAATCATATCATTCTTCTAGAATGTGAAATAGGCCATTGAGGTACTCACTGGGGA
TCCTTGAAATTCGCTCTGGAAGTCCGTTTTTCTCGCCTGGTCCGCACGCGACGAACCAAGAGTCA
GTGCCGTGAGGTATAGAAAACTCTATATAATGAATCTCTTGGCTT
Found at i:131812 original size:12 final size:12
Alignment explanation
Indices: 131795--131837 Score: 70
Period size: 12 Copynumber: 3.6 Consensus size: 12
131785 GGTACATGAA
131795 CTTCATTATCCT
1 CTTCATTATCCT
131807 CTTCATTA-CACT
1 CTTCATTATC-CT
131819 CTTCATTATCCT
1 CTTCATTATCCT
131831 CTTCATT
1 CTTCATT
131838 TTCCACTCTC
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
11 1 0.03
12 27 0.93
13 1 0.03
ACGTcount: A:0.19, C:0.33, G:0.00, T:0.49
Consensus pattern (12 bp):
CTTCATTATCCT
Left flanking sequence: Indices 131295 -- 131794
TTCCATATACTCCAAGAGTTCCTTCTTATTCATAATCAGATTAGACACTTGGACGTCGCCATGTT
GTATGGATCCTTTCGAACCTAATTGAGGACTTAAAGTCTTTGCTAAAGTATCCAGACTACTAGGG
AGAATACAGATAGAATCTCTAAAACGGAAGACCCGTTTCTTTTTCCGAAAAACTATTAACTCGTA
AAGCTTATTGTTCCTAAACATAGGTTTGAAGGTGTACACATCTTGATGAGATGATAAATATTTCA
GTAGTATAATTCCATCGAATCGTGAGAGGTTATGAAAGTAAACCGTTCGACACTTTGTTTCAGAA
GCCACCACCTCTAAACGCTTGAGAAAGTTGAACAGCATTTGATTACTCCTATCTTTAAAATTTTT
ATTTAGAAATAAAGCATCTTCACTGAAATAAGTTTCATCAATTGGATGATCGACACCTATAGCAT
CACCAGGCCTAACCACTAAGAAACCAGCTGCGTAAGGTACATGAA
Right flanking sequence: Indices 131838 -- 132337
TTCCACTCTCTCCAGAACTGTTTCCATATCTGCAACAATGAAAGCCCTCCTTTCCTTACTACTAG
GTTTGAGCGAAGTTACATAATCAGGATAGCGACGACCCTTACTCTTATATATTGTTTGAACTTCA
GGGGGGGCCGAAATGCCGGCACTCATTATTTTCCAAACTTCTTTTTCAATGTCATCGCACTCTAA
CTCTAACTCTTTATCCTCCATACCAACCATATACACTCGAATGAATAAACCTAAGAGTATTCCAT
CCTCGTATTCCTCAGCTTTTTTGATTATATCTTTCAGAATTCTATCATATATTCCCTTGTTAACA
TTACCACTATTTTCATATAAAGGAATAGCGTTCCCTATTGTAAAAACAATATTTCCTTCCTTATT
AGGTAATATCATATCATAACCTACTGTAAAATGACCGGACGTAAACCGTCTAGGGTACACAAATT
TAGCTAACTGTAGCATTACTGCTAATGCTATCAATTCAATATATA
Found at i:133903 original size:15 final size:15
Alignment explanation
Indices: 133883--133912 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
133873 AAACGCCGCG
*
133883 TTCACACGTTCCGGT
1 TTCACACGCTCCGGT
133898 TTCACACGCTCCGGT
1 TTCACACGCTCCGGT
133913 GTATCAGCAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.13, C:0.37, G:0.20, T:0.30
Consensus pattern (15 bp):
TTCACACGCTCCGGT
Left flanking sequence: Indices 133383 -- 133882
GCATATACAGAGTTTTCACGAGCTTTCTATCTAACATAGAAGCTATGATATTATACTTTACAGTA
TCAAATTTCTTATTCAAGAACAGAAGAAGTTCCTCTCGTAGAGACGCATACAAATCGTGGATTAC
CCCGTCATGAGACGGTATTAGATTCGTTAGCCTAGCCAGCTCTACATTAAGTAGATAATACCCCA
TTAATTGATAAGCACTAGCCGATGCATCTTGAGTCAAAGGATTAATAAAGAAATTCCGAACTCTT
ACTTCAGTGGAAAATCTTTCGTTGAAAATATATTTCGATATATACTGAAATGGATCACTAGCTTT
TGTAACCCATTGAATTAACTCTCCGTCTTTTTCTTCAAAAAGATATTTATCATACATGTTCATAT
TCCAGTTAAAAGCTTTCTTATTTGATGGAAATTTTTGAAACTTAAAAGCAGTACTAGCAGCTATT
TCCTGTCTTTTTCCCCAGCTGCCGGACGGTGATAAAAACGCCGCG
Right flanking sequence: Indices 133913 -- 134412
GTATCAGCAAATACAATTAAAGATTTAGCCAAATCACATCCATGAAAATGCATCCCACCAGGGCG
GTATATTCTACCACGAAAGTCCACGAATGCCGGCAGATAAAATGTCAACTCTAAATACGCCGTCG
CTATACGTAATAAAAATCCCTCTGACCTAGCTCGTTGTACCATTCTACTTAATTCAGTTAATAAT
TTGTTAACCCCGGCTATCCTTTGTATATCAGCATCTTTGAAGTGACATTGTCTCAATAGCTCAGA
CGCTTTTAGCATATTAATATTTGCTAGACGTCGATCTGCAAGCAGTCCCGCCGCTTCTAATGCAT
TACGATTTTTATTAATAAATCTCAACATTGTATTGTTTATCTTAAAAGCAACCGACTGAAGAGTA
TTTAATGCGTAACACATCTCTTCTTCATTATCAACGAGGATATAGTAATTATCAATGTCATGAGA
AGATAATATACGAAACCTATTATAGGCATCGCCGTGTAGTCCACT
Found at i:136366 original size:46 final size:47
Alignment explanation
Indices: 136298--136388 Score: 175
Period size: 46 Copynumber: 2.0 Consensus size: 47
136288 TATTAGGTCC
136298 TATTTATATCCCCTAAAGTGATCCGATAATGTTTAATGACTTTTTAA
1 TATTTATATCCCCTAAAGTGATCCGATAATGTTTAATGACTTTTTAA
136345 TATTT-TATCCCCTAAAGTGATCCGATAATGTTTAATGACTTTTT
1 TATTTATATCCCCTAAAGTGATCCGATAATGTTTAATGACTTTTT
136389 TATAGAAAGA
Statistics
Matches: 44, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
46 39 0.89
47 5 0.11
ACGTcount: A:0.30, C:0.15, G:0.11, T:0.44
Consensus pattern (47 bp):
TATTTATATCCCCTAAAGTGATCCGATAATGTTTAATGACTTTTTAA
Left flanking sequence: Indices 135798 -- 136297
AGGAAGTAAGCATATTAGCTTTATTTTTTCTAATGTCGTTCGTTTCAGAAAGTTGTTGTTCCCGA
AACAGGGCCATCACCCCCACGATGACGTTTTTTTGCTTTTTGCACCAAGTTACTTACGGCTATTG
AACCACACTATCTTATGAAACCTACTTTTCCTTATGAAACCTACTTATATCATTAATATGAATAT
GTAATAGCTTCTGTCAATACCTCCGTAGCCTTACCCTAGATATTTATTACAACACCATCAGATAC
TTCAAAATCTATGAATTATCATATAGGTTGTTGACAGGCTAATAGGTTTTACGTTTCTTAGGAGG
GTTTTTTCTCTATAGATAGCCCCGTTATATAGATCAATAACGTGTTATTCTCTATAGATAGACAG
TTTTTTTTCTTTATAGACTGATCGTTATATTTTTTATTTTATCGTCAAAGCATTACAACAAGGAA
TGAAATAGCTCGTGTATAAAGGAGAAAAGAAGTCTTATTAGGTCC
Right flanking sequence: Indices 136389 -- 136888
TATAGAAAGAAGAGAACCAAAGGAGAAGAGAACTTCGTATTTTTATTTTGTTCTACTAATTATCC
CGCGCAGCCTCAACCGACCATGGCATTGCATCCTTATGCTCTATAAGAGTACAATGGTTCTCTGA
CTTAGGAACATGAAGTCGATCCGGACTTTTAAAAAAGTTCTCTTAGGTTCTTAGTAGCAGTCGGC
GACCTTTTCTTCTTTTACTTCACATAGCTTTTCGTCTCCTTGATAGCAGGAAGTTCTCCAAAAGT
ATGAAAAGCTGGAGGACTTTGTACCATCCATTCCAGTGTGGTTGAATTCTGTTCAACAGCCCAAG
GACTTGGAGCACATCTTTTGTTATTTCCACTGCTTGAAGTGATTGTTACGACCACGAAGAAACAA
CAAATCCCAACTACGGATATATAAGAGCCAAAACTGCTAAGGGCATTCCATCCAGCGTAAGCATC
TGGATAATCTGGAATGCGACGTGGCATACCCGAAAGCCCTAAGAA
Found at i:145235 original size:39 final size:39
Alignment explanation
Indices: 145192--145270 Score: 140
Period size: 39 Copynumber: 2.0 Consensus size: 39
145182 CGATTTTCTA
* *
145192 TTCACTCATGATCTGGCCTGGTCGACTCGATCATGATAT
1 TTCACTCATGATCTGGCCTGGTCGACCCAATCATGATAT
145231 TTCACTCATGATCTGGCCTGGTCGACCCAATCATGATAT
1 TTCACTCATGATCTGGCCTGGTCGACCCAATCATGATAT
145270 T
1 T
145271 GAAGGATGGG
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.22, C:0.27, G:0.19, T:0.33
Consensus pattern (39 bp):
TTCACTCATGATCTGGCCTGGTCGACCCAATCATGATAT
Left flanking sequence: Indices 144692 -- 145191
GCCCACACCTGTGTAGAGTAGATCGTTCAACACCTGCGGCACAAACCCATTTTTGACCTATTGGT
CCTAGTATCATAGGCGACCGAACGGCCGCCCCCTAATTACTAGACCAACCTGCTATAATAATTCC
ATAAACACCTAGCGAAGATATGGCAAACAAATAAAGTAGCCCTATGTTCGAATCTGACAATACCA
TACCATAATCAAAAGGTACAACGGCCCGAGCAACCAGACTTAACATAAATGTAGTCACTGGAGCC
ATTCTAAAAAGGGAGAAATTAGCACTACTTGGTGAAATAGGTTCTTTTAGAATCAATTTCAAACC
ATCCGCTAGAGGTTGTAACAATCCGAACGCTCCCACTACATCAGGACCCTTTCGACGTTGCACAA
AAGCCATTACTTTACGTTCAGCTAGCACTAAAAAGGCTACTCCTAGTAGAAGTGGTAGAATTATT
CCAAGTATTTCGGCTGGAACAGCTATGTACGTTTTCGATTTTCTA
Right flanking sequence: Indices 145271 -- 145770
GAAGGATGGGACCTTTTCTCGAAAAACTCCGGATCGAGTTGAAGGTGGTGCAACATCGAATCTTG
TTACCTTACTTCGAATGGAATCTTAGCCCGCCTCACTTGCTTTCTGTACTGCATAAGGTTCTGAA
AGAAAGTAAAGGGATTTCCTTCTAACTAGTGGCTGAGAGTAAGCAAGCTACCTTCATTCAACAGA
TTTGTGGTTGAGTCAATAAGGGTCGGGAATCTTTGCTCTTCTCTTTTGCATTTCCGCTGCCTGCG
TTCTTCTTCGTGTCCGTCCGTATCGCAAAGCTGGTCGACGCCAGCTGTAATGGTTCATTTCGGGA
GTTTGAACACCATCCCAAAAATACAACCCTGTCAAAGGTATCTAACCTTCCTTCTGAGTGGAAAT
CCAATCCCGTTTTGTCTTTTTTGCATAAAAACCAAGCTAATATAATATATATATATTTCTTTTAA
ACCCGTTCTTCCGACCCCTCCAAAAATGACCTTCTCCAGTGTTAC
Found at i:149865 original size:18 final size:19
Alignment explanation
Indices: 149842--149877 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
149832 AAGAAACAAC
149842 CACCTGC-GTTTGGTGCAG
1 CACCTGCAGTTTGGTGCAG
*
149860 CACCTGCATTTTGGTGCA
1 CACCTGCAGTTTGGTGCA
149878 TTCTTCTTTC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 7 0.44
19 9 0.56
ACGTcount: A:0.14, C:0.28, G:0.28, T:0.31
Consensus pattern (19 bp):
CACCTGCAGTTTGGTGCAG
Left flanking sequence: Indices 149342 -- 149841
GTTCCAGCTCTATCTTATGGTCCACCGGCCTTCTCGGCGTAAGGGTCTTCGACACTCAGGCGTGA
CATCCTCAAAATCTCTTGTCGGGATCGTGGAACTATCGCTCGAGAAGTAAGTAAGCTGCTTCTTC
TTTAGTCAATAGGATAATCGTTCTTATTAGGTCAGGGGCGGCCGGCCCGGGGGTTACCCGCGATT
GGTAATGGCATAACCAGAAGAGGGGTAGAGGTGACAAGGTTACGCCCTGGGTAGCGCAGCGCATC
TGTTTTGGGTACAGAGGCGACGAGGGGTGCTAACCCGGCCACCTAACCCAGCGGGTCAGGGGCGG
GCCGGCCATAGGTTCGAATCCTGCCACCTTTCTTGTGGATCATCTTATGGTTACCGGATGATGGG
AATAACAAAGCAGCAATTATGAAATGAGCACGAAATGTCAATATATGAATTGTTTCATTATTCGT
TATTTCCGGGTCTTTTCATTGCATTCACTTACAACAAGAAACAAC
Right flanking sequence: Indices 149878 -- 150377
TTCTTCTTTCTTTCCTTGGTCTTTCGTTCCGTCATATTCCTAATAACTTATCCAATTACAACGTA
TTAACCGCTAATGCACCTTTCTTTTATCAAATCTCAGGGACATGGTCTAATCATGAGGGTAGTAT
TTTATCATGGTGTCGGATCCCAAGTTTTTATGGATTCCTTCTTTGTTACCGGGGTCGACCCCAAA
GCCATAATGTCTCAAAACGAGGAGGCCATAGAGAAACTTTTTTTTATTCCTTTGTCTCGAACTTC
GTGAAGAACTCCATTCTATCTCTCCCTCGTTACGAAGAAAAAAGTGGTGGTGTTGTACACCGCCA
GTTGTACACTCCCTTCGTTCTACGAACCCTTGTTGATTCTGAACTTCCTTCGCGAAGGAACCGGA
CTTTTGACGGGCTAGCCCTTTTTTATGCGCCGCTTTACCCTGAAAGGAAAAAGAGTTTTGCTCCT
CTGGGCGCTAGGCGCTCCCGTGCTTCGCGAGAAGGAAAAAGGATT
Found at i:167621 original size:15 final size:15
Alignment explanation
Indices: 167601--167630 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
167591 TGCATATTGT
*
167601 GTGTGAGCGAATGAG
1 GTGTGACCGAATGAG
167616 GTGTGACCGAATGAG
1 GTGTGACCGAATGAG
167631 CTTGTCGGAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.27, C:0.10, G:0.43, T:0.20
Consensus pattern (15 bp):
GTGTGACCGAATGAG
Left flanking sequence: Indices 167101 -- 167600
CCACTTCAAATCTTCGTTTTCGAGAAGGATAATCAACTCCGCAAATATCGATCAAAACTTGAACC
CTTGTATAGGTATGCAATTTAAGAAAGCACAATAATTGAAATGGGTAGTCCGTATTGGTATCAGA
TCTATTCCCATGTTCCGATCTTTCCATTTTTTTTACCCATTTCTTAGGTAAAGTCTCCCAACTAT
ATTTGAAAATGAATTGGTTATACATAATGATTAAGATTCACTTGTAGTTCCGCTTCTTGCTCTAA
AAAAGAAGAAAGACTTGTAAGAAATCGCCGGTTGGGTTGGTCCAACCAAGAAAGACATGGGAATC
TTTGGGCATCTCACAGGAAAAGGAATTCTTTTCGATCTTGTAGCCACGGCACTGAACACCCATCC
AATCTCGATTGAAAAAAGAACTCAAATAAGCCAGTGAAATTATTCACTCCCTTTGTGAAAGTTAG
AATCGCACTTTCACAAAGATCGATTCATTTATCTATGCATATTGT
Right flanking sequence: Indices 167631 -- 168130
CTTGTCGGATCCGCCGCTTCTCAGGGGACTGAGTCTATTTACGAAAAAAGAAGCGGAACGAACGA
TTCTTCCTTTGTTGAGATAGAGTCGACAGACTAAGCACCAACTGGATCGCCTACGGCACGCACAA
AGACATTTGAAACTGGCCATTCACAAAATGAACTCCTCTTTCAAGAGAGAAGGGCGCCAATAAGA
CAAATTGAATCAAGAAATGCACTTTTCCAGGAGAAGGAGAAAGATAAAGCGGGTTGGGCGGGAAC
AAGAAGTGGGGAGTTTCATGTTTTGGCGTTCCAACAATTTCACATGTTCCTAAAATCGGCATTCA
TTCTATTAAGTTACTCTCAGTTCCGAAATCTGCCATTGTTCCACTTCCGGCTGATAAAAAAAATG
AAGGGGCACTTCTTCCTACTAAAGAAGCAGAGGCCATAGAGACATAGGTGGTTTAAGAACCAATC
CGGAGCGCTCGGAACCAAAAGCATCAGTATCAGTCCCCCAGTTGC
Found at i:168600 original size:13 final size:13
Alignment explanation
Indices: 168582--168607 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
168572 ATGGCTATGT
168582 TTTGATAGAATGC
1 TTTGATAGAATGC
168595 TTTGATAGAATGC
1 TTTGATAGAATGC
168608 ATTGCCTGTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.08, G:0.23, T:0.38
Consensus pattern (13 bp):
TTTGATAGAATGC
Left flanking sequence: Indices 168082 -- 168581
AATCCGGAGCGCTCGGAACCAAAAGCATCAGTATCAGTCCCCCAGTTGCAGTTTATTCTATTGAT
CTAGAGCCAGCTAGAGTTCAGATGGAGGCAGCAGAAGCAGTGGTTGAAGACCCGATTAATCAGTG
GAAGCAGCAGCCCACCAGAAAAAGGGGCAGAGCAAGCAAAGGCACCACCATCTCTACAGCATTCG
TTTCAACAGAAAAGGCCGAGTCAGAGGCGGGTAGAGCAGAAGCCGGGAAGGCAGAAGCTTCACCC
ATTTTAGTCGACCCAGAAAAAAGTAGCAAAGGGAGGCAGCATCCAGTGGATCAGCGTCAAAGGCG
GATTGAATCAGATCCAATTGACCCAGTGGGCGGATACAGCTGCATCTAAGCTAATGTAAGTTGTT
GATTCAGCTCAGTAGTTGACCCAGCCAGAGCACCTATTGAACCAGTCCTAGAAAGCATCCCTGTT
GTTTCGAGGAGGCGTTCCTGTTTATGTTACGAGAAATGGCTATGT
Right flanking sequence: Indices 168608 -- 169107
ATTGCCTGTTGTTCTTAGCATCCCTCTCTCACGAAAGATGTGCTCTAGTCTTTTTGGTTTTTTTA
GAAAGGTTTTACCTCCCGACCCGTATACTATGCAAAGGCAAAGAGATATTATATATAGATATATA
TATCGTGGAGGGGATCATAATCAGGCGCCAACGGCGGCTCGATAGGCGTCCATGCATAGCTCAGC
GCCTAAGAAAAGTTGCAGTACTTGACCGAGTTGACTCATCAGTCGTAGTTCTACCAATTTCTATT
TGTGATTCAGTTGAAGAACCACCAGTTTTTTTCACCACTTGCAATCCGAGTAGCAGATCCAAATG
CTTAGCTACCAGTAGCATCCGATACAAAGATCCATCCTTTGCATTCCCCTCCTTTAGAAAGAGTA
GTTGCCCCGCCCCTTTTTGCATGGTTTCAGGGCGCTTTGAGAAATAGAATATCTTATGTTCTCCT
AATATCGACAGGCAAGTTGCCCATTTCTGTGTGCTCTAGGCTTGA
Found at i:179825 original size:15 final size:16
Alignment explanation
Indices: 179783--179825 Score: 52
Period size: 18 Copynumber: 2.6 Consensus size: 16
179773 TCCTACCTTA
179783 ACAGTCGATCATGCGCTC
1 ACAGTCGATCATGCG--C
*
179801 ACACTCGATCATGCG-
1 ACAGTCGATCATGCGC
179816 ACAGTCGATC
1 ACAGTCGATC
179826 TGTCCATCCC
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
15 9 0.39
18 14 0.61
ACGTcount: A:0.26, C:0.33, G:0.21, T:0.21
Consensus pattern (16 bp):
ACAGTCGATCATGCGC
Left flanking sequence: Indices 179283 -- 179782
GAAGTACCCTGAGAGGGAAGGGAAGGATGTGTCTGGTGGACAAGTACCTTAAGTGACAGTTCAAT
CAGAATCTTAATAAGAAAGAATAAGTAAAGGAAATCGTTTTGTGTCCATCTACGGCGTCTCAAAG
AAATTTTGATTATAGGTCCAGATGTGGTAGAAAGAAGGGCTTAAGACGGATAAGGAATAGTAAGG
CTTTGGGTCAACAAGACAAGCCCCGTACGCCAGGTTGTTGTCTCAGATTCATTCTGCAGATGCGG
AATGGGAACTCAATCCTTTTGAAAAACAGGTCTTTGTGGCTGAATAGGCGAGAGCTACCTTCAAC
CATTACACGGGCTTGCTTTTCTTCCATTCCGAACTCATAACCGGAAACCAACAAACGCGGATGGC
TTTCACTCTTCTTTCTTTGCTTTTGACTTTTCATTTTTTTTTTTAATCGGGACAGCCCAGAAAAT
AGTCTGAACTTCTTTCAGAACCTCTTTGTTGAAGGTCCTACCTTA
Right flanking sequence: Indices 179826 -- 180325
TGTCCATCCCACTGGGAGGTGAGGTTGTCCAATTTCAATTTTGTGCCGCTCGTTGACATCTAGTT
TTTTTCGGTGTGATAGATCTTCCTTCGGTTCTAGTCAAGTATGGCAGCTTGAGGCCTCCTATTTC
ACCCATTGGGAACTCTAATCAACTTTCATTTAACGGCAGGCGAGAAAGGATAGCGAGAAAGGTGG
AAGGGCGGTTTGCTCCCGTTTCGGGGTTCTCTTGTGGACTGGCTGTTGACCGGCCTTTGCCTGTC
GTTGGAGTTAGCGGGATTAGAGGTTGAAGAAAACCGGTGCTTTTAACTTAAACGGATTTTCACAG
GATCGGAGCCTTTCGGAAATCCTCCCGCTTCACTTGAGCGATTGACGCAATCCAAGAGGAAGAGG
AAGTCAAACCGTGATCGGGCTTGCCTTGAAGGCTCTTGTCCGGGTTCTTTCTTTCAATGCAAGTT
GCCTAATCTGAAATCGGCGTTCTTAGCTGTCCGTGGAGTTCGAAT
Found at i:203817 original size:21 final size:21
Alignment explanation
Indices: 203791--203832 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
203781 AGCTTACTCC
203791 GTTGATGAGCATGGTTCTGAA
1 GTTGATGAGCATGGTTCTGAA
203812 GTTGATGAGCATGGTTCTGAA
1 GTTGATGAGCATGGTTCTGAA
203833 AGAAAGCAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.24, C:0.10, G:0.33, T:0.33
Consensus pattern (21 bp):
GTTGATGAGCATGGTTCTGAA
Left flanking sequence: Indices 203291 -- 203790
GGGTTTCGTGTTCCTGTGATGGTTCAGCAGGTTCAAATAAATAATTTTAATCATAAACAATGTCA
TCAGTATCGGAAGTTACCTCAAGTCTTTCCTCAGGAGTCGATTGGGCGAGCGGAGTAGGAGAAGG
GGGCATAGTCGATGCTTCATTGGGTGGTGATTGATCGCCATGATTGCCATGTTCTTGTGGATCGC
CCGGTGAGTGGGGATCGATCGCTGCATGATGAGGTTCACTTCTGGGTGGTGGCGCTCGATCGCCA
TCTTGTTGGGGATCGATTGTCATGGCAAGAAACTTGGATCTTTGTCGCTCTTCTCTTCAATAAGT
TGTCTCTCCCCCTGAAAGGAAGGGCTAGGTAAGTAATAGGGCGTGTCCTCCTGAAAGGTGAGATC
CATAGTCACATAGAACTTCCGAGAGGGAGGATGATAAGACTTGTAGCCTTTCTGGGACGATGAGT
ACCCAACAAACACACATTTCAAGGCACAGGGATCTAGCTTACTCC
Right flanking sequence: Indices 203833 -- 204332
AGAAAGCAATACAGCCGGGTGGTATACGGAGGACGGATGGGACTTCATGGTGTGAGGTGAGGGCT
TCAAGTGGAGTTTGGAACTGTACTATCCGAGAAGGGACTCTGTTAATCAAATACACTGCAGAGTA
CAGAGCCTCGCCCCAGGGATAATGGGGTACATGCTGATCAATGAATAAAGAGCGAGTCACTTCCA
AAAGGTGATGGTTCTTGCGTTCTGCCACACCATTTTGTTGTGGAGAGTGGGGACAAGAGGTCTGA
TGGATGATGCCATGGGTTTTAAATAAAGTGACAAGTCTATGGTTGACATACTTCCCCCCGAGCGT
AGAACCTGTATAGATATGCACTAGATCAACTACAGTGTGCTCATCTTTATGCAACTCCTCTATAG
GAGGAGAGAATGGCGTGTCACGGACCACCTCCACATCAAGTTTTGTAGAATTGTAGAAAGAGCCT
TATTCATGGCGGTAGACTTCTGCAAACCCAAACCACCATGTTTAC
Found at i:237167 original size:37 final size:37
Alignment explanation
Indices: 237117--237194 Score: 156
Period size: 37 Copynumber: 2.1 Consensus size: 37
237107 TTTTGTTTTG
237117 TTGTTTTTTATCCTTGTATTGACTCTTGACTGTGCTC
1 TTGTTTTTTATCCTTGTATTGACTCTTGACTGTGCTC
237154 TTGTTTTTTATCCTTGTATTGACTCTTGACTGTGCTC
1 TTGTTTTTTATCCTTGTATTGACTCTTGACTGTGCTC
237191 TTGT
1 TTGT
237195 CAGGATCTGA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 41 1.00
ACGTcount: A:0.10, C:0.18, G:0.17, T:0.55
Consensus pattern (37 bp):
TTGTTTTTTATCCTTGTATTGACTCTTGACTGTGCTC
Left flanking sequence: Indices 236617 -- 237116
ATAGCCCTTTGACCCAGTTTGCTCTTCCATTTCTTAGTAGGAGTGCTCCTATGTTAGCAGGACAT
TTCGTGCAAGAACTAGGTTTGAGTTAGTGCACTAACTAGGTTCTTTTTTCTCCCCTAATGGCTCT
ATCTCTGAGTTCTTATTTCGCTCACTAGGGCAGAGGAGGGCTCCAAGCTATCTTGTTAATGATAA
GCCAGAATCCTTTCTTCTATTTTTTTCTTTATGTAATTTCCTCTACCGTTTGGGAGTGAGTTCGA
ATTACCTTTGCTTCGCAACCTTCTTCAAGGTTTCGGCCAGGAGAAGGTAGAGCGGATGTAAATGT
GTAAACAGCACCTGCCTTTCAAGTTGCACCGGCGAGGGCTTCTGCTGAGGCGGAGGTTATTACTT
CGGGTCTTCCTGATGCTTCCACTCCTCAAGTCAAAGTTGAGGTATGCACCTTCGTTTGCCTCGAC
TTTTCTTTCGCTACCCATTTCGGGCCTTCTTTTTCTTTTGTTTTG
Right flanking sequence: Indices 237195 -- 237694
CAGGATCTGAGCACTGAGGATCCACTTCTGGTTTCTCCGGATCATCCGGACAGAACGGCGCCTCC
GCGTGTGGACTCGGTAAGCACTTCTTGGCTTCTCTGGTCTGCTTGTGGTCTTTTCTCGACCATCT
TGTTTTATCCTCCCCCTTCCTTATTTGTGGACTTTCACCCCCGTTCAGGTTGGTGGGCGCCCAAG
GTGTTGGAAGTGCACTACTTTGGGAGATGAGATCAAGCGTCTTCAGGGCGAGAATCTTTCTCTCC
ATGACGAGCTGCTGAGTGTCCGATTGGCTAGTGAAGACCGAGCTGCAAAGCTTGAGGCAGAGCTC
GAAAAATCTTCTTTTGAGGTCAAACGCTGGTAAGGCATTGCCCGGCGCGTCAAGACCCAATTTTC
ACCAGAGTGAGGAGGAGGCCGTCATTACATATATGATGTTTAAAACCTATAATTCACGAACTTGA
AGTCTTTTGGCTAGAATCAATGGTGCAAAATGAGTCTCAAAAACA
Found at i:248095 original size:21 final size:22
Alignment explanation
Indices: 248069--248109 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
248059 ACTAAACCCC
248069 CTTTTTTTGTAC-ATTGAAAGA
1 CTTTTTTTGTACAATTGAAAGA
*
248090 CTTTTTTTTTACAATTGAAA
1 CTTTTTTTGTACAATTGAAA
248110 TTTTTCTTCT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 11 0.61
22 7 0.39
ACGTcount: A:0.29, C:0.10, G:0.10, T:0.51
Consensus pattern (22 bp):
CTTTTTTTGTACAATTGAAAGA
Left flanking sequence: Indices 247569 -- 248068
CCTGCCCTTTTCTTTCTGCATCCGTTCTTCTTTCAGAACCTTAGCGCTTCGCACTACGCCAGTAA
ACTACCACCTAGCCTTTAGTGGATTGCTACATGGAAGGCTCTACGCAATTCTTTTTTTCTTTATA
TATGCAATTTTTCAGCAGCATCCGATGAGATCCATGGAGCCATTCTTAGATAGCAAGAAGTGGCT
TCTCGCTTTCTATTGCCGATCAGTAACATTAATCAATATAATTAATTATGCTCTCTTAGTTTCAA
TGGACCGCTCTTCGATCCTTAGCACCACTGAATCCACACCCTAAAGAACAACAAGAGGAAAGATA
AATACCCTTTGTTGCCGCATCAGTTAACAAGCGACCCCGTAGAGCCTTCCATGTAGCAATGCTCT
TCCTTGGTTGAATGCCACGTTTTCCCTTCTTTTTTACTAGGAATTCGGCGGTCAGGTAAGTGTAC
CTACTTTCCTTATAATGCAAACCTTTTCGTATTACACTAAACCCC
Right flanking sequence: Indices 248110 -- 248609
TTTTTCTTCTCCTGTCACCTCTAGCCATCCTAAAGAGCGGGACTCCCAGAAAGGGGCCGTAAGGC
TAAGACTGATTCTTCCCTCTCTTATGATCTTTTTTCCGCTCTTGCCGATATCGATACGGTGGCAT
ATTCGGTAATAGAAAGAAAAGGACTTAAACCAGCAAGGTCCATCCTGAGCCAAGGGCATCTGGTT
AATCACTATCGCTCTGCAATCTAAAATATGAGTATTCAACCGAGTCAATTCAATCATCCGATACA
CCATTTGACCGGGAAGCTTCTCTTTCTGAGCGAGATTGCTAAGTCTTCTGACCTTCTCGTCGAAA
GACGTTCTAACGCATGCCTTTTTGGTCTGATACAGATAGAGAAATCATAAAAATATATCATATAA
CAGAAGGGGAGAAACCTCGCCGTAGGAAAGGAAGGGCAGTTACACTGCTCCTGGGATTGATGTGG
AATAGCAGCCGCCGGCCACTTAAAAGCGTCCCAAAGGTAGGGAGT
Found at i:255650 original size:18 final size:18
Alignment explanation
Indices: 255610--255652 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
255600 ACCGCCCTGC
255610 CATAGTCGCGAGTCTGTTT
1 CATAGTCGCGAG-CTGTTT
255629 -ATAGTCGCGA-CTGTTGT
1 CATAGTCGCGAGCTGTT-T
255646 CATAGTC
1 CATAGTC
255653 AACAAGGTTG
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
16 5 0.23
17 1 0.05
18 16 0.73
ACGTcount: A:0.19, C:0.21, G:0.26, T:0.35
Consensus pattern (18 bp):
CATAGTCGCGAGCTGTTT
Left flanking sequence: Indices 255110 -- 255609
CCTTGAATTTTTTTCAAGTGTCAGTAGCGGAACGTTCTGTCAATCGGGGAAGGTTTTTGGTGACA
ACACCTGGAGATATCAGAAGTGAGAATGCTGACATGAGTAACGATAAATCCTGTGAAAAACACGA
TCGCCTGCCAGTGGAAGGCTTTCTGCGTTCAGTCAATCTACGCAGAGTGAATCGGTCCCTAAGGA
ACCCCCGAAAGGGCTGCCGTCCGATGGGTACACGAAAGTGACGAAGTTGCTTTGACTACAGAACC
ATGCCTGTCTGTTGGAGCGAATTGAATGATCGGGCCGAGGGCAGCCCCCTCTTCCCCTCACTCTC
CTTTCCCTAATATGAACCTTGAGTCATCAAAGCCTTTCTGACTCGGCCTGGCCCGGGCGCCCTAC
GCGACTGGCGCTTCAAAAGGCGAAACTCTCGTCGTAGTTTGGCGACCTAAGGGGCCTTTACTCTT
TTGATTAGAGCAGGGGTCGCGAGAGAGCAGAGCGTACCGCCCTGC
Right flanking sequence: Indices 255653 -- 256152
AACAAGGTTGAAACTTCCAGGAAAAAACTTCGAATTGGGAGGGCGATCCTCCCGGTGAACTGACC
GTACCCCAAACCGACACAGGTGAACAAGTAGAGTATACTAGGGCGCTTGAGAGAACCATGTCGAA
GGAACTCGGCAAAATGACCCCGTAACTTCGGGAGAAGGGGTGCTCTCCTATCTTTTGATTAGGAA
AGCGGCACATACCAGGGGGTAGCGACTGTTTATTAAAAACACAGGACTCTGCTAAGTGGTAACAC
GATGTATAGAGTCTGACACCTGCCCGGTGCTGGAAGGTCGGAAGGAGAAGTGTTATAAGCTTTGA
ATGGAAGCCCCGGTAAACGGCGGCAGTAACTCTAACTGTCCTAAGGTAGCGAAATTCCTTGTCGC
ATAAGTAGCGACCTGCACGAATGGTGTAACGACTGCCCCGCTGTCTCCGACATGGACCCGGTGAA
ATTGAATTCTCCGTGAAGATGCGGAGTACCAACGGCTAGACGGTA
Found at i:257343 original size:15 final size:15
Alignment explanation
Indices: 257325--257399 Score: 50
Period size: 15 Copynumber: 5.1 Consensus size: 15
257315 ATCCTTCTTG
257325 CTCTTATCTTCCTCC
1 CTCTTATCTTCCTCC
**
257340 CTC-TATCCTT-CTTG
1 CTCTTAT-CTTCCTCC
*
257354 CTCTTATCTTCCCCC
1 CTCTTATCTTCCTCC
* **
257369 CTC-TAGCCTT-CTTG
1 CTCTTA-TCTTCCTCC
257383 CTCTTATCTTCCTCC
1 CTCTTATCTTCCTCC
257398 CT
1 CT
257400 GATGTAGTAA
Statistics
Matches: 42, Mismatches: 12, Indels: 12
0.64 0.18 0.18
Matches are distributed among these distances:
14 20 0.48
15 22 0.52
ACGTcount: A:0.07, C:0.44, G:0.04, T:0.45
Consensus pattern (15 bp):
CTCTTATCTTCCTCC
Left flanking sequence: Indices 256825 -- 257324
AACTGCAGCTCTGCGGGAAATCCTTCTCTATACAAGTTCTCGGAAGAGGTTTTAGAACAGAACTT
CGATAGGCGAGAGGTGTAAGCACCGCGAGGTGTGAAGCGATCTCGTACTAAACAACTTTACATAA
CTGAAAGAAAGTCAAACTATTACTGCAATTGCGGTCAGTCTCGATAACTCTTTAGTTGCCGCAAC
ATACTTCCTCATTAGAAATGACTACCACAAGAAAGAGAAGTGGAAGAAGCGGGGTAGAGGAATTG
GTCGACTCATCAGGCTCATGACCTGAAGACTGCAGGTTCGAATCCTGTCCCCGCCTAATCAAATA
AGTCAAATAACTTGAGATGCTTTTTTTGGTACTGTACAAGCTCTTAGGTAAGAAGATCTTTATTA
ACTGTAAAAAGTGTGTCCACTCATGTTTCAACTCGAGATGCTCACCTTCATAGGCAGCCTTAAGA
GAAGAATCCATTTCTAGTGGAAGAGGCTGGGACCTATCCTTCTTG
Right flanking sequence: Indices 257400 -- 257899
GATGTAGTAAGGAAAGTCATAGGTAGCTATCCTGATTCATTGCATCCTCTATGAGCTGTATGTAG
CTACTTTCTATCCAGCTATTACAGATAATAAGTAATTAGAGGGCAGCCACGCACTATTGGAAGAG
TTTCATCAAGAGTTAGGAACACTTTTTAAAGGAGGTTCTAATTCTTCCGTCTTTCTCTTTGACTG
CCTACACTTTCCTAATCTGGTTTATCAACTCTAGAGGTGAAACCCAGTCATCTGGCGTGTTGTGG
GACCATCTGGTACTCAGGATATACCATGAAAAAAAAGGCTTATCCGGAATAGCATTAGATCTATT
CGAACGTGAAATCGGTCCTGGGTTCAGCACTCAGAAAAGGGGTTAGCAATACCTCCAGTTACTGG
CCGTCTGCGACGATTGAGCAAGATTCTGAAAGAAACGACATATCTTCGCCATTGGAAATTTTGTA
AACCAGCGCTTACTTAAACCAGTACATGACTGGCTAATGGCTGTC
Found at i:257346 original size:29 final size:29
Alignment explanation
Indices: 257313--257399 Score: 156
Period size: 29 Copynumber: 3.0 Consensus size: 29
257303 AGGCTGGGAC
257313 CTATCCTTCTTGCTCTTATCTTCCTCCCT
1 CTATCCTTCTTGCTCTTATCTTCCTCCCT
*
257342 CTATCCTTCTTGCTCTTATCTTCCCCCCT
1 CTATCCTTCTTGCTCTTATCTTCCTCCCT
*
257371 CTAGCCTTCTTGCTCTTATCTTCCTCCCT
1 CTATCCTTCTTGCTCTTATCTTCCTCCCT
257400 GATGTAGTAA
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
29 55 1.00
ACGTcount: A:0.07, C:0.43, G:0.05, T:0.46
Consensus pattern (29 bp):
CTATCCTTCTTGCTCTTATCTTCCTCCCT
Left flanking sequence: Indices 256813 -- 257312
TTGGTATGGAAGAACTGCAGCTCTGCGGGAAATCCTTCTCTATACAAGTTCTCGGAAGAGGTTTT
AGAACAGAACTTCGATAGGCGAGAGGTGTAAGCACCGCGAGGTGTGAAGCGATCTCGTACTAAAC
AACTTTACATAACTGAAAGAAAGTCAAACTATTACTGCAATTGCGGTCAGTCTCGATAACTCTTT
AGTTGCCGCAACATACTTCCTCATTAGAAATGACTACCACAAGAAAGAGAAGTGGAAGAAGCGGG
GTAGAGGAATTGGTCGACTCATCAGGCTCATGACCTGAAGACTGCAGGTTCGAATCCTGTCCCCG
CCTAATCAAATAAGTCAAATAACTTGAGATGCTTTTTTTGGTACTGTACAAGCTCTTAGGTAAGA
AGATCTTTATTAACTGTAAAAAGTGTGTCCACTCATGTTTCAACTCGAGATGCTCACCTTCATAG
GCAGCCTTAAGAGAAGAATCCATTTCTAGTGGAAGAGGCTGGGAC
Right flanking sequence: Indices 257400 -- 257899
GATGTAGTAAGGAAAGTCATAGGTAGCTATCCTGATTCATTGCATCCTCTATGAGCTGTATGTAG
CTACTTTCTATCCAGCTATTACAGATAATAAGTAATTAGAGGGCAGCCACGCACTATTGGAAGAG
TTTCATCAAGAGTTAGGAACACTTTTTAAAGGAGGTTCTAATTCTTCCGTCTTTCTCTTTGACTG
CCTACACTTTCCTAATCTGGTTTATCAACTCTAGAGGTGAAACCCAGTCATCTGGCGTGTTGTGG
GACCATCTGGTACTCAGGATATACCATGAAAAAAAAGGCTTATCCGGAATAGCATTAGATCTATT
CGAACGTGAAATCGGTCCTGGGTTCAGCACTCAGAAAAGGGGTTAGCAATACCTCCAGTTACTGG
CCGTCTGCGACGATTGAGCAAGATTCTGAAAGAAACGACATATCTTCGCCATTGGAAATTTTGTA
AACCAGCGCTTACTTAAACCAGTACATGACTGGCTAATGGCTGTC
Found at i:267198 original size:58 final size:58
Alignment explanation
Indices: 267108--267268 Score: 304
Period size: 58 Copynumber: 2.8 Consensus size: 58
267098 ATAATTCAGA
267108 TCAGAATAGTAGCTATCCAAGAAGCTCTCTAACGAGCTTTTGGATCTGTTTTTACAAC
1 TCAGAATAGTAGCTATCCAAGAAGCTCTCTAACGAGCTTTTGGATCTGTTTTTACAAC
267166 TCAGAATAGTAGCTATCCAAGAAGCTCTCTAACGAGCTTTTGGATCTGTTTTTACAAC
1 TCAGAATAGTAGCTATCCAAGAAGCTCTCTAACGAGCTTTTGGATCTGTTTTTACAAC
* *
267224 TCGGAATAGTAGCTATCCAAGAAGCTCTCTAACGAGCTTCTGGAT
1 TCAGAATAGTAGCTATCCAAGAAGCTCTCTAACGAGCTTTTGGAT
267269 TTCGTGTAGG
Statistics
Matches: 101, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
58 101 1.00
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.31
Consensus pattern (58 bp):
TCAGAATAGTAGCTATCCAAGAAGCTCTCTAACGAGCTTTTGGATCTGTTTTTACAAC
Left flanking sequence: Indices 266608 -- 267107
CCGCGAAAAATATGAAGGTGAACCACAATGAGAAACATACTTGCCCCATTAGCATGCATATAACG
GAGCAACCAACCCCCTTCAACATCTCTCATAATGTGTTCTACGCTGTTGAAAGCTAGATCCACAT
GAGGTGTGTGATGCATAGCTAAAAAAACGCCAGTCACTATCTGAATGACTAAACAAATACCAGCT
AACGGACCGAACCCCCACCAATAACTAAGATTGCTCGGGGTTGGATAATCTATCAAATGCTGATT
AAGTGTGGAGGATATCGGTTGTTTAAGAAGAGAGAATCGTTGGTTCCTTATAGTCATTTATCTTT
CCTATCGTGACAACTCTAGTTCCCTCACCCTTTTAGCGTTCTGGGGCCTTGCGCAGCTTTAGAAG
GGAGAGAATTTCAGGCGGTTAAAGTAACTCTCTCCAACCTTTTCTATCTACCCGGGCGTCAAAAT
GATATTTGCATTGGTTTGTCCAAAAAAAAAAATTGATAATTCAGA
Right flanking sequence: Indices 267269 -- 267768
TTCGTGTAGGTCCGCAACTCCTCAGAGGCCGCAAGGGCTTCAATCTCGGAGGGGGATTTCACATC
AATATAAAAACTTTGGGCCATTTTTTGGCCCAAATGATGGAAATCCGCCTCACGGAGCTGTGGAT
ACCTAGACATCACAGCCGACTTTTCGGCGTGTTTTTGGAGGTGCCGTGCCAGTAGAGCGGAAAAC
CGCTCGTTAGCAAGCACCCACTCATGGTATGGTGAGGCGGGCTGGGAGGGGCCCGCCTCATCGCG
GCTTGGGATGGTAGAACGTAGGGAATTGCTTTCCCTACTTTCGGATTCCGTTTCCGAAAAGGGCT
CTAACAGCACGTCGACCCCAAACGAATCCTCCCTCCACGAGGACGAGCTTGATGGGTCGGAGGGG
GCCGGAAGAGCTTGCTCCCCACCCACACACAAAATAAGAAATAAGCAGGATTTTACCCCGCTAAA
AAAATGTAAAAGGAAATACATTTTTACCAGGTGGAGCAGTATGGA
Found at i:267991 original size:12 final size:12
Alignment explanation
Indices: 267974--267998 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
267964 GGGCAAAAAG
267974 ACTATAGCCCTA
1 ACTATAGCCCTA
267986 ACTATAGCCCTA
1 ACTATAGCCCTA
267998 A
1 A
267999 GTAGATAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.36, C:0.32, G:0.08, T:0.24
Consensus pattern (12 bp):
ACTATAGCCCTA
Left flanking sequence: Indices 267474 -- 267973
CAAGCACCCACTCATGGTATGGTGAGGCGGGCTGGGAGGGGCCCGCCTCATCGCGGCTTGGGATG
GTAGAACGTAGGGAATTGCTTTCCCTACTTTCGGATTCCGTTTCCGAAAAGGGCTCTAACAGCAC
GTCGACCCCAAACGAATCCTCCCTCCACGAGGACGAGCTTGATGGGTCGGAGGGGGCCGGAAGAG
CTTGCTCCCCACCCACACACAAAATAAGAAATAAGCAGGATTTTACCCCGCTAAAAAAATGTAAA
AGGAAATACATTTTTACCAGGTGGAGCAGTATGGAAATCCACAAATAAATTATAATATAAAAAAA
AAAGACACGGAGAAAGCCGTATCTTTTTTTCCAACGAAAAGCAAAAAGATTAAAAAGAATAACGA
GGCAGAGCCCCAAAATGGACAAGAGTAAGAGAGTTCTTCCCGCGGTTCCTTCTGATCCTAGAAAA
CGTCCGAAAAAACCTTCTACGGAACTACCGAGAAGGGGCAAAAAG
Right flanking sequence: Indices 267999 -- 268498
GTAGATAAAATGATTGTTTAGACAATGATGGATTTCGGGCAACAGAATGGATCAACGAACTGAAT
ACATTTCCAATACCGATAACAGCTCCCGCTGAAGCAATTGTAGCAGCCCCGGCACCTATTGATTT
TGCTCCTTCTAACATATCCTTTTTTAGAATTCTCCTCACGCTTTTTCATTACCAAAAAGGGTTTT
TTCATTAACAAAGTTTATGTCCTTCTTCATTCTTCACCAAACATTAACAAAGTTTATGTCCTTCT
TCATTCTTCACCAAAAAAGTGAAGATCAAAGACTCTTCCCCTCGTTCCACTTGTAATGCAAAGCA
TTCCTTTCGATCTTGTACTAAGGTACACTGAACACCGACGTAATCTAGATGATTAAAAAAGTGAA
CCAAGGTTTCATCATTGCAAAGGCAATAGGAACATGAGTTTTGAATAGACTCGCCGTATAAGATT
AGCAGCTATGTAATCTTTACAGCAGAAAGCTCCTAATTTTATTAG
Found at i:268250 original size:39 final size:39
Alignment explanation
Indices: 268196--268273 Score: 156
Period size: 39 Copynumber: 2.0 Consensus size: 39
268186 AGGGTTTTTT
268196 CATTAACAAAGTTTATGTCCTTCTTCATTCTTCACCAAA
1 CATTAACAAAGTTTATGTCCTTCTTCATTCTTCACCAAA
268235 CATTAACAAAGTTTATGTCCTTCTTCATTCTTCACCAAA
1 CATTAACAAAGTTTATGTCCTTCTTCATTCTTCACCAAA
268274 AAAGTGAAGA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.31, C:0.26, G:0.05, T:0.38
Consensus pattern (39 bp):
CATTAACAAAGTTTATGTCCTTCTTCATTCTTCACCAAA
Left flanking sequence: Indices 267696 -- 268195
GAAATAAGCAGGATTTTACCCCGCTAAAAAAATGTAAAAGGAAATACATTTTTACCAGGTGGAGC
AGTATGGAAATCCACAAATAAATTATAATATAAAAAAAAAAGACACGGAGAAAGCCGTATCTTTT
TTTCCAACGAAAAGCAAAAAGATTAAAAAGAATAACGAGGCAGAGCCCCAAAATGGACAAGAGTA
AGAGAGTTCTTCCCGCGGTTCCTTCTGATCCTAGAAAACGTCCGAAAAAACCTTCTACGGAACTA
CCGAGAAGGGGCAAAAAGACTATAGCCCTAACTATAGCCCTAAGTAGATAAAATGATTGTTTAGA
CAATGATGGATTTCGGGCAACAGAATGGATCAACGAACTGAATACATTTCCAATACCGATAACAG
CTCCCGCTGAAGCAATTGTAGCAGCCCCGGCACCTATTGATTTTGCTCCTTCTAACATATCCTTT
TTTAGAATTCTCCTCACGCTTTTTCATTACCAAAAAGGGTTTTTT
Right flanking sequence: Indices 268274 -- 268773
AAAGTGAAGATCAAAGACTCTTCCCCTCGTTCCACTTGTAATGCAAAGCATTCCTTTCGATCTTG
TACTAAGGTACACTGAACACCGACGTAATCTAGATGATTAAAAAAGTGAACCAAGGTTTCATCAT
TGCAAAGGCAATAGGAACATGAGTTTTGAATAGACTCGCCGTATAAGATTAGCAGCTATGTAATC
TTTACAGCAGAAAGCTCCTAATTTTATTAGGCACATCCAGGGACCAAATGCCCTAATCAGGTTCA
TTGCCCCTACTGCCTTCACACCCTCGGTGCCTTTCTTTTCTTAAGGCTCTTCCTTCAGCAGTGTC
AATCAGAGGCCAATGGTTGCCTATAGAAAGCGATTTGAATACTTTTTACAGGTTACTTGTATGTT
AACATTATTTCCTATGAAATAATAATTAAAAAAAGTAAATGATACGGATAGATTGACTCAGGAGA
AAGAAAACTTATAACCGACGTCAGCATTTTTCTTGTTACTCTTTT
Found at i:283866 original size:21 final size:21
Alignment explanation
Indices: 283841--283882 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
283831 CCCAGCGCAT
283841 TTTCTTCCCTTTTCCCAATAA
1 TTTCTTCCCTTTTCCCAATAA
283862 TTTCTTCCCTTTTCCCAATAA
1 TTTCTTCCCTTTTCCCAATAA
283883 GTCGACGACG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.19, C:0.33, G:0.00, T:0.48
Consensus pattern (21 bp):
TTTCTTCCCTTTTCCCAATAA
Left flanking sequence: Indices 283341 -- 283840
AAAGCTTGCCTTTCCTCTTGCCATTCGATCCGGGCCGTGAGAGCCCGGAACTCACGTTCCATTTT
GGCGCCTTGTTGCCGTTCATGATTGAGCTGAGCTTTGAAAGCGCTCAGTTCCGCCTCCTGGCGCT
CCAACGCTTCCTGGGTGTCTCTGAGCGCCGCCCAGGTTGCCTCTATCTCTTCCGCAAGCCCCGCC
TGATCCGGGGCATTGAGATCCGGAATGAGCGGCGGCGGAGCCCCGTTCAAATCGGGAATAACCGC
CGGGGCCGGCGCTGGGGGGGCGTCCGGACCCAATCCCGGGCCGATTGAAAGATAGAGAGGTGGGT
GCACGGCCGCCGGAATGAGTTCCCACCCGCGCCATTCCGGCGACAAAAGAAGGCAAAAAAAAGTC
GAGAAAAGGGCACACAGCCCCTTTGCGAGGAAAGAAAGGAAGATAAAGCGCCGGAAAATGGCGTT
ACACCATTTTGCGATTTCGAATAAACTGGAGTAGTCCCAGCGCAT
Right flanking sequence: Indices 283883 -- 284382
GTCGACGACGTTACACCATTTTGCCACTTCGAATAAACTAGAGTACATATAGGATACACCGGTAC
TAAAACCTTTTCTCAAAATATCTTCCAAACTGTTGGGGTCGTTGCTCCGGGTGTTGTTCCCCCGC
TGTGAAACCAGTCGGTTCCGTAGTTTTAGAATTCTGCTGATCCCAAGGAATCCATCTCCATCATT
GCATATGGGAATATAGAAAGTAAAGAGGAAAAGGCATGACCAGAAGAATTGTGTGAAATAAGTGA
ATTTATCCAGTTGAGGCATTCTTGATTGACAAACAATAATTCCCTCCAGAAAAGCAAGTTCCTCT
TACCTTCCCGTACGAGTAGTGAAGAACTATAGAGAGGTGTAGTTGGGTGTTGCCCAACGGAAAGC
ATGGGAAAGAAGTACCACAGAAACATTAGCCCAGTTTGAAAAGTCCAAAGAGCGCAGACTTGCCG
CGCGGCTTCTATTTTAGTTATTTATGTATGCTATTTTTCTTTTTA
Done.