Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_068217
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 1678054
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
File 2 of 2
Found at i:1284170 original size:13 final size:13
Alignment explanation
Indices: 1284152--1284178 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
1284142 CTTTCGACTT
1284152 ACTTACATTCAAA
1 ACTTACATTCAAA
1284165 ACTTACATTCAAA
1 ACTTACATTCAAA
1284178 A
1 A
1284179 AGTCATACTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.48, C:0.22, G:0.00, T:0.30
Consensus pattern (13 bp):
ACTTACATTCAAA
Left flanking sequence: Indices 1283652 -- 1284151
CACGAAGGAGCGAGCCAGACTACAAAATTGAATAGTGCCAGAACGAATAGCTTAGCACAGGAACT
TACCATCGATCTTAAGTTTTCTCAGGAAGAGGTGCTAGATCTAGCCGCCCGACCTTTTCTACTTC
TCCCCAATCAAGAGCGGCTAATCTCAGTACTTGTTACACTATTAAAGAACTTATGGTCCAGTCTA
TAGAGAAAAATCCTTTAATACCTGACTTGTAGTGGATTTCTTTTTGGAAGTTCTCTCGCCTGCCT
ACCTAAGAAAAAGCTTTCTTTCTCCTTACCGTGTTTGTGTTATTCCTCGTAAGCAATTCCTTTTC
TTGTTCACAGAGCTCTCCTCTCTCGGGGCCTATTAGTTTGAGAGCCGCCTTTACTGACAGCTGAT
GCCAAAGTAGTGCATTCTCCCCAGCCTTACTAAATGCGTGAACAGTTGGATAAGATTGGTTGGAT
TTACCCACTTAGACTAAGTCAAAAAGACTTACTGACTTTCGACTT
Right flanking sequence: Indices 1284179 -- 1284678
AGTCATACTTACTTATAAGGAGACATACATAGATGTCAAAAGAGAGTTTCTTCTCACCTTCCTTT
GGAATGGCGCATCAAAAGCAAGAGTCATAACAAAATGAAAGAGAGGAATGAAAAGAGTCAGCAGG
CGCGCAGCGAAGTATCCTCCTTTGGTTGGAGAAAAAAGATCACAGCTACGTTCGTAGTCAAAATG
ACCAGCGTCGTTACGTCCAATCAGTAGTGTTCCAACCCCTGTCCATCTTTCGGACGAGAATCTTC
GCTCTCCACATCGGCCATCTGATGGAGAGAATTGTTTTCCCGAAAAGGGCTCGCCTTCCGTAGCT
CGTGCTTTCTTCTTAAGTACCCGCACGCAAAGAATGAAATGCAAATAAAGAAGACGAAGTACTCC
TTTCCTAACCCCCCAGGATTCAATCCAGCCCCAAGCCTAGTCCTACTAGTAGGAAAAGAGTCAAC
TCGACTGAGACTTGACTACGCCGAACTGATAGATAGAACAAATAG
Found at i:1293729 original size:21 final size:21
Alignment explanation
Indices: 1293703--1293744 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
1293693 TCTTCACTCG
1293703 ATTCCGACTTGACTTAGCTTC
1 ATTCCGACTTGACTTAGCTTC
1293724 ATTCCGACTTGACTTAGCTTC
1 ATTCCGACTTGACTTAGCTTC
1293745 CTAAATTAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.19, C:0.29, G:0.14, T:0.38
Consensus pattern (21 bp):
ATTCCGACTTGACTTAGCTTC
Left flanking sequence: Indices 1293203 -- 1293702
TACCAATTCTGAATCCGACAAGCAAGCACGAGCAGGGGCATCTGATACTTCTTGACTAAGGCTTT
TTTTTTGGTACCCTGGGACTGGTTGACTGGCTGGAGGATATGCCGTATTTATTGCTCGGTTTGAA
ATTCTCAAATGAAAGAATTCTGGAAAATCAGGATAATTCGTTGGATCTCCCGATACTGTTTTGGC
TTATAACGCTGGGTACCTACACACACGACTCACTAAAGCGGTTTAAGGAAAAGAGAAGAATCCGG
TTCTTTAACCCAGTGAGTAACTACTAATGTTGCGAACGAAAGGCCTTACTTTCAATCATTTGTAA
GCAAACCGTTGCCGCGTTTCTCCCTCTTTACTGCCTTAATAGGGTATTTTCTATGCTGACAAGCC
TACTTTGTTATTTCTTATCATTGCGCTTCTGCAGTCCACTGATCTTGGCCTTGGGTTGGTATCTT
TCTCAGAGATGATATACCTTTCAGATGCGAGTCTATCTTCACTCG
Right flanking sequence: Indices 1293745 -- 1294244
CTAAATTAATGTTCTATTATATATCCAATTGCCTTTGAAATCCATTTCACTGTGTCACTCCTTCC
TCTTCGTTTTCCTATACTGACTTTGTAAGACGATTCGAAAGAAGAACATGGGTGGGGCAAGCTCG
GGATGAGACTTCTCAATTGATCCTAGCAGCTATGCTACAGAAATAGATGTCTTCACCCGGGACTC
AACATGCCACTGCACCATATGCTAGTGTTGGACTCCATACAAGGATGTGTTCGCAAGCACTCTTT
GCAGCTCCGCGAGTCTATCTCGCTGAGAAAGATGAAAAGCGTCAACCCGTAGTGAAAAGTAACCA
GTCTCTTGGCACAAAAGAGAATTACTCAAGCATACTCTGCTGCATTGAAAGCTCGTGGTCGGCCT
ATGCTATGATATCCAGTTCTCCTTGCTTGCGACGTCAATGCCTCTCTAAATGCTCTGGAACAATG
GGTTTCCAATTTCTCAAAATTCTTCTCCATAGGGTGAGAAGGTAA
Found at i:1308809 original size:33 final size:33
Alignment explanation
Indices: 1308763--1308864 Score: 186
Period size: 33 Copynumber: 3.1 Consensus size: 33
1308753 CCAACTTATG
**
1308763 GCTCTTTGGGCTCTACACGTGCCGTAGTTACTC
1 GCTCTTTTTGCTCTACACGTGCCGTAGTTACTC
1308796 GCTCTTTTTGCTCTACACGTGCCGTAGTTACTC
1 GCTCTTTTTGCTCTACACGTGCCGTAGTTACTC
1308829 GCTCTTTTTGCTCTACACGTGCCGTAGTTACTC
1 GCTCTTTTTGCTCTACACGTGCCGTAGTTACTC
1308862 GCT
1 GCT
1308865 GGGTTGGGGA
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 67 1.00
ACGTcount: A:0.12, C:0.30, G:0.21, T:0.37
Consensus pattern (33 bp):
GCTCTTTTTGCTCTACACGTGCCGTAGTTACTC
Left flanking sequence: Indices 1308263 -- 1308762
TTGTCACGATGTCTACGTACTAGTGAATCATCCGAGCTCAGAATCCATCTCGTTTATAGAGTTTG
CGTCTGGTTGTGTGTCTAGTATAGAAATAGGAGTGCTACGCTTGTGTCTTTCAAAAGACCCCGTC
GGGAACAAGTAGATAAATCGATTTATGTAGTAATCCCATTGCACAGTGGTTGAGAAAGGATCATG
CTCTACCCATCGCTTCTGTCCCTATCCTATAGCTCTTCGGCCAGTTTCTCATTCCATATCTGTCG
CCTTCCTGAAGCAGAGTGAATTCCCTATCTGTGAGACCACCCTCTATCAGTCCTACGGAGTGTCA
AGGCATGCTTAACATATTCGATAAGTGACCATGCTTCAAACACATAGGCGGTAAGAGCGAAGTCG
ATGAGGCACCTTAAATGAATCTCTATTCTTTGTATTTTGATTGTATCCGATGCGCGCGCCCGCCT
CAAATCGCATTGTAGCCTGTTTTGGTATCGTTTCTCCAACTTATG
Right flanking sequence: Indices 1308865 -- 1309364
GGGTTGGGGATTTCGAAGTTGATGGAATTCTGACCTTTCCATATCAAAATATTTAGCCTCATCGA
AAGATGACTTTTCTTACCTATTGAATGGATTAGACTTCATAGGGAGTCAGTCTGTGCAGCAGAGA
GCGAGTGTTGGCTACCCGGTGCCAACGCATCTACGAGTTGTCCGCACCTTATACAAGGGACCAAC
TTGGAAGTTCATCCGTCCTTCATGTTCGCTGGTGCCGACTACCGCCTTGCATGTAGAGATGCCTC
CTTCTCTTCTGAAGGAGGGCAAGAGTGCAACAGAAAGTTCTGCTGTTAAGCATAGTAAAATTAAT
AGAAAGTGACGCCTATTCGTATAAGAGGGGTACGAATGGGTGAGATCCGCACTTTTTGTAGGTTT
GTTTGGACCGAGGCCCGGGCAATTCACGAGTAGTAAGGGGCGGGAGCAAGATGTGGCTGCGGGGC
TTGCTCAATGGGCTTTCTTCAACCCCTTTGAAAATCCTGATTTGT
Found at i:1336013 original size:20 final size:21
Alignment explanation
Indices: 1335988--1336028 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 21
1335978 CACGGAGCGA
1335988 AAATATGCA-AGTAT-ATGATG
1 AAATAT-CAGAGTATGATGATG
1336008 AAATATCAGAGTATGATGATG
1 AAATATCAGAGTATGATGATG
1336029 GTTTTTACGT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 2 0.11
20 11 0.58
21 6 0.32
ACGTcount: A:0.44, C:0.05, G:0.22, T:0.29
Consensus pattern (21 bp):
AAATATCAGAGTATGATGATG
Left flanking sequence: Indices 1335488 -- 1335987
TTTACGAAAGAGAGGTTAATTTCGACTTTACTACTTTCCAGCCAACGCACTCTAGTCAAATTGAA
GGAAATTGTTTGGCCCCTATTATATTTCTTTATTAAGGGAGGGCACGTTGAATCAAAGTTTTTCT
TGGTGAGGTCTGGTATGGGCATGTACTGGGTAGTACCTAATTAAAGGTTTAGTGGGTGCTTAATT
CCCGGCTACTGTACTGCTCTGCGATACCACTCAGGGCTATATTTCATACTAGTCAAAGCGAGTCT
CATCTTCATATTCTGGGTATGATGTTGCTGGCTACTCCTTGGTATAGATAAAGTTATGTCCCGAC
GTATGTCTGAACTCTATAAGAAAGAAGTTCCCAGTGAGCTGCGCTTAAAAAGCCAGGGTAAGACG
ATCGGCACGAACAATGTTGTCGACTATGTTGATGATCATGGAGTCCCTTCATTGGGGTGCGCTCC
CTTTTCGTGGGGTTTTCTTTAGTTTAGACACAAGGCACGGAGCGA
Right flanking sequence: Indices 1336029 -- 1336528
GTTTTTACGTATATTTGGCCGTATTCCCTGATCCTTGACAGGTGTGTGTCGCATAAGTATATTTC
TTCGAATGAGAAGTGGTTCTTCTTTGTCGTCATCAGCAACAAGGCGTAGAGCTTTACCTGAATTT
GGGTTTGGACTTTGATAAGCAGAAAAACCCAACTTAAGAAATAAGTGAGTTTAGCATGTTAAAGA
AGCAACGGTAGGTGAGCATAAAAAGGAGTCTTGTTTGTGCTGAAATAATTAAGAACGCTAGATAC
TTCTCTCTATCTTGTCAGAAGACTGCGCAGGTGAATTGCTACTTTGTACTGTGCCCTGCCCTGTA
GGAACAACATCTGTATGAGTGCCTGCCAAAAAAAGTCAACACTGATTCTGGTGCGCTTTCAAGTA
GTACCAAATTGATTGCTAAAGATCGTCGGCGTAAACGGAATTGATATAGACTATATATAAGAAGT
CTGTCTAAGAATGTTCCTAAAGGAATCCAACTGGGCAAGAAAGAT
Found at i:1348915 original size:12 final size:12
Alignment explanation
Indices: 1348898--1348922 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
1348888 TGCAGCTCAA
1348898 TCCGTTGCTTGT
1 TCCGTTGCTTGT
1348910 TCCGTTGCTTGT
1 TCCGTTGCTTGT
1348922 T
1 T
1348923 AGGAGCAAGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.24, G:0.24, T:0.52
Consensus pattern (12 bp):
TCCGTTGCTTGT
Left flanking sequence: Indices 1348398 -- 1348897
ATTCTTGGACCTTGCTTCTGAATATTTTGACTTTTCTATGCTGTGTCTTAGGAACCTTTTCAATA
CGGTCCGGATTGCTAGCTTCCGTTCATAGTTTTGCTACAGATGATACACGAGGAAAATTTTTATG
GTGGTTCTTCCTTCTAATTACAGGCACATCTATGATTCTTTTCTACCAGATGAAGCGGCAGGCGT
CGGTCCGTAGAACCTATAAAAAGGAGATGCTTGTGGCGCGAAGTACTATTGCGCACTTACGTCAC
TCGGCTCGCGCGCAACCCTGCCCTCCCGTTATTTTATGGCAGAATTGAGCTTCTGGCTGGGTTGG
TTATTAAGAGCCAGCAATTGGTTGCCGGATTTCATCCCATCCGTAGCACTTCGGAAGTCACTGTA
GCGTGGCTGAATGTAGAGCAGTCCGCGACGGAAGCCTTTGATCAGTGAAAGAGCAGAAGCAAGAA
AACTTTAGCGCGTGCGAACGCGCAACGACGCGCAGTGCAGCTCAA
Right flanking sequence: Indices 1348923 -- 1349422
AGGAGCAAGCCAAAGAAAGAGTTCATTCACGCTTCGCCCTCCGCCCCCCCGCCTATAAAAGCGAG
CTACAGGAGCGAGCCTAGGAAACTGGCTTTAGTCATTAATGGTCGGATTGCAACATGGGGACCCG
TTTTTCGGTATGCGTTGCGAACACTTTCATTTTTAGCCTCTCATCTTCTTTGGAGAAGCTCAAAT
AGAACGGATAGAGCAGATGGTACAACTACAGAACTTCTTCTTTTTCATTACTTCCATGGTCGTGC
CTTGTGGCACGGCAGCACCCCTACTATTTCAATGGTTTTTTAGTAGAGATGTTTCCACTGGTGCC
TCTTTTTTCAATGGTACTATAATTCCTATTCCTATCTCTTCATTCCTTTTTTTGGTCTATCTACA
TTCAAGGAAATTCATACGCTCCATGGACAGAGCAAAAAGTGGAGTGTTGGTCAAAGCAAGCCGCC
CTATTCTATTACCAGACCAAATTGGTAGAAACTCATCCGCCAGAA
Found at i:1365030 original size:14 final size:14
Alignment explanation
Indices: 1365011--1365038 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
1365001 TCGGCTGGGC
1365011 ATGGAATATAGATA
1 ATGGAATATAGATA
1365025 ATGGAATATAGATA
1 ATGGAATATAGATA
1365039 GTAGTAGCTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.21, T:0.29
Consensus pattern (14 bp):
ATGGAATATAGATA
Left flanking sequence: Indices 1364511 -- 1365010
TCTTGCTTGTTCTCGCTACGCGCCTCGTAATAGCCATAAGTTGGATAGGTATTTCCTAGAACGCC
AAGCGCAGGTTTAGTTTACTCGGCAAGGGTGAGATAGGGATGTGTAATAGAATGTATTTGATTAG
TTTACAAAGAAGTATAGAAATGAATAAATTGAAATCAAAAATAGGGAAGAAGCAAGTCTCAATAC
GTACTTGCCAAAGCCAATACCAGTAAGCGAGCGAATAGGTATATGAGAGTTTCGGCTAAGAAGTA
GGAAGCTTCGGCTAAGACTAGAAGAGAAACTGGATAAGTTGTCTCGAGCGAGGTGTAGATCCATG
AACAGGACTAGCATGAACATATTTGACAAAAGCAGTAAGAAGTGTAATGTCAAAAGTGTCATTTA
CTGGAAAGGCAGGGTACGCAGTCCTTTCAGCAGGATAAGTCACAAGGAAGTACTTGATCAGCTAG
GTTCCACCGAGGCAAGAACTGGTTGAGCTCGATCATCGGCTGGGC
Right flanking sequence: Indices 1365039 -- 1365538
GTAGTAGCTGGGCCTTCTTTGTTCTACACATGGCGTAGTTACTCACTGGCGCAAAGCGGTAGCTT
TACACGGGCCTAAAGGGAGTAGGCAGAATAAAATAAAAGTACGAAAAAGTAGAATTGAAAAAGTA
GGTGGCAGAAACCGAGGGTGATACGTGAGGAGAGAGTGTGTTTGGTTTTTACAGACACTTGGTTT
GAGTATGCTAAAGCAGCCATATTAGAAAACAAAATTGTCAAAGAACTCATTGGAATTGTGAAAGC
CTTCAAGTGCTCTAGGAATCGACTTCAAAAAACGCCCTCTTGAAGAGCTACTGAACATGCTAGAT
ACTCGACTCCCATAGTGGAAAGCGCTATACAAGACTTCTTCTTGCTACGCCAAGAAATAGCACCG
CGACTCAGCGTATCCTAATGTCGACTTGCGTTCGTTCATCTGCATCACCTCCCCAATCGGGCATG
TAGTGTGCTATACCCTTCAGATATCTAAGAATTCTTTTTACCGCG
Found at i:1371626 original size:20 final size:18
Alignment explanation
Indices: 1371585--1371621 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
1371575 AGAAATATTA
*
1371585 AATAAGAATGTGTGAATC
1 AATAAGAATGTGTGAACC
1371603 AATAAGAATGTGTGAACC
1 AATAAGAATGTGTGAACC
1371621 A
1 A
1371622 GAATACACAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.46, C:0.08, G:0.22, T:0.24
Consensus pattern (18 bp):
AATAAGAATGTGTGAACC
Left flanking sequence: Indices 1371085 -- 1371584
ATTTCATTATCTATTGTGTTAAGGATGTGTCTATGGCTCATTGCCTGTATGTGAAGTGGAATTAA
GAGCTAATCTGAGTAATCAAGTTAATGAGTGGGAATTTTAGTAAGAGGGACTAATTTCTTAATGT
TCTAATCATAGGAAAAATGTAGGAATGTGCTAATAAAGTTCCTAATGTAGAAGTGTGCTAATCAT
ATCGTGGGTAATGGGTAATGTGTTAAAGTTAGAATCAGCCATATATCACCAAGCTTTACTGCTTC
GATAGACACATATTCAAAACAAAGACAGTTTCCCATACACTATCGACTTCTTTTTCATTCACTAA
CTGCAAAGGAAGTAAATAAGAAAAAATATTAGGTTACTGTTTGAAGAAATAAGGTTTATTTTTCC
ATTCCGATGAATATGTAAACCAAAGAAAGGATAAAGAACTATCTATTGATTTCTCACTTACTGAT
CGGTAAGTCAAATAATTAATAAGTAAGAAGTAATAAGAAATATTA
Right flanking sequence: Indices 1371622 -- 1372121
GAATACACAACCCAAAGAAATAATAAACTCGAAATTCCAAAGAAGAATATTTTGGAATCTATTTG
AAACTCCAAATTCAACCAATTATGTGTCATTTGTCTTCTTCAGTTTGTCATTTATTACGTACGCC
TGATTTTAATGTAATCGGGACATGATAGAATTCCTTCCTTGTACGAAGCCTGCCTACCTACCTTG
GCCATTCTTTTTATTACAGTCGATGTATATCTGTATGTGCTGCTATTTGTTTGATCAACATTCAA
AATGGAATATGTCTGCGCGCGCGGATTCTTAGCAACGAAAATGCCCTAAGTACGTATGGATCTAA
TTGATTGCTAAACGGAAGGAACGATCTCTGTCGAAGATTCTCATTCTGAAGCTGGTGCCTAGCTC
TGGCAGGATGGATGGGAGCATACCTATTAGAAGAAGGCCCTGGGAACGACATTCTGTAAAACTTG
CTTTTGAGTGGGGAAGGAATAAGGTTATTCTTAAATAGTTCAACA
Found at i:1420536 original size:17 final size:17
Alignment explanation
Indices: 1420514--1420547 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
1420504 CTAATAATAT
1420514 ATATCGCAGAAAATAAC
1 ATATCGCAGAAAATAAC
1420531 ATATCGCAGAAAATAAC
1 ATATCGCAGAAAATAAC
1420548 CAAAAATAGC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.53, C:0.18, G:0.12, T:0.18
Consensus pattern (17 bp):
ATATCGCAGAAAATAAC
Left flanking sequence: Indices 1420014 -- 1420513
ACATATCTTCTCATCTCAACACTAGTTAGTTCATCACATACAGAAGAAGAATTGATAATGTTATA
TCTTTCTTAGAAGGAGGCAAACTTCAGAGAGTGGGTCGCCTAAGGTAGAGAATGCGAGAATATCA
AAACTGTTAACGTGGGTAGCATGGCTTGGATTAACTATGAAGTTCTCGTTTTCTGTATATAAGTT
CTTTTGCTTGAACATATCGATGATATAGTGTGCCATGATTGCATCTACTCATTATGTGATTGCCG
GACCTGGAGCGTGGATAGCAAGAACTCAAACGATCAGCGACTGAGTGTTCATCATCATCATCATA
ATATGAAGATGCGCACGCATCGGCAGACACGGGAAAAGCGCACTTTAACAACAATAGCGTAGCTT
CTTATTACTTACTGCCCGGAACGCACAAAGCGCTTTGGACGATACGCGCAGCACCTCTTACCGGT
GAAGACAGTAGGGCTAGCTAAGTGAGTAACTATACCTAATAATAT
Right flanking sequence: Indices 1420548 -- 1421047
CAAAAATAGCGCTATAAACCATACAGAATCGAAGCGAAACCCAGCCTTGCCCAAGGTGTGTCAAG
CTTTGAGAAAAAAGATATAAGGAGAAGGGGGTATCATTGTTAACCCAGTGCCCTTTTCCCAAGCC
TGTAAAAGAGTCTAGTCAGTAAGCTGACACAGTTCGGTAGGTAGGGTCGGTACTGTGACATGCAA
ATATAATGTACGGCGGCATGAAAATGGAATTTTGCAGTTAGAGCGCTAGGATACATAAGAAAAAA
GCAAGGGAAAGCCCATTGCATTGGAATCCTTTTCCTATTACCGGCTTTGGTAGATAGGAAAATTC
TACTAAACAGCTACTATATTGATGCTGGTATGGGTCATTAGTTCTATGAAACTATGTGGAACAGG
TCGGACATATATGCCTATGGTGTTCTGCTTCTAGAACTGCTAACTGCTCTTGAAAGCTTACTTGA
ATTCTGATAAGGAGAAGGAGGAATTCAAAGCTACGTACGAAACTA
Found at i:1434194 original size:14 final size:14
Alignment explanation
Indices: 1434175--1434203 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
1434165 GGGCGGAGCA
1434175 AGCTAATTGACTGT
1 AGCTAATTGACTGT
1434189 AGCTAATTGACTGT
1 AGCTAATTGACTGT
1434203 A
1 A
1434204 TGTGCCCTTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.31, C:0.14, G:0.21, T:0.34
Consensus pattern (14 bp):
AGCTAATTGACTGT
Left flanking sequence: Indices 1433675 -- 1434174
ACGACGAGTTCTTTTTTTCCATTATAGAAGCTATGTTTTCAAAATAAATAGCATTGTTTTGAACA
ATTAATTAGCAAGGGGTGCTTACATCAAGATACTTTGTAAGGTTTTGGCAAAATAATAACTGTTT
ATTATACATATAGGAGAAGCATGATTGAAGAGTAGTTGAATGCATTATTAGTTTTAGGTTATGAT
AGTTTCATGTCAACTTTCAGACTTATTCTATTATAGAAAATCTATGTAGTAGTACTCAGCGATTA
TTGTTATTACTCTCATTTTTGTTTGCTTGGTGGCTTGTACCACTTATTATACCTAATTGATTTTC
ATAACTTATGGGGGCGTGCGCCCCTCCTCTCAGATCCCCGGACTACCTGCGGTGTAGCTGGCAGC
ACTCGTCCGCCAACCTGGAGGCAATTCGCTCGATTCGATCTCAACCTTATCCAGCGCGGGTATCT
TGCTTAGGACACTTTGCTTTTCTATCATACTACAAGGGCGGAGCA
Right flanking sequence: Indices 1434204 -- 1434703
TGTGCCCTTCCAACCAGGTGTGTCGATTTGAGTTTGAGATTCAATTGGTTTTGGGGTTGTTTGGA
AGGTCGGAAAGGAAGGACTGTAAAAAGCAGATAGGAGTGACGGAACCGGCGTGGATCACAGAAAT
GCGGCGAGTGCCCGGAAGAACTAAAGGCCGATAGAGTTGTTGTGACATGCCATGAACCAAGTTCG
AATTGGACTAGTGCCAGGTACAAGAATGAGTGGATTGCCCGAAAGAGGTGAGTCGCCCAGAAAGA
CAGAGTGGAGTGGATTTACAGATACTAGGACCTGAATGACTAGTGACAAAAGCCATTACGAATGA
CTCGATCGAGTCCCGAGAGACAGAAAGATTGACGGGAAGAAATTCCCCCATACAGATAGAGGCGC
CTATAGCCTTGCCTCTGGCTTTTCCGCCACTTTTCATCTGCATTCCCAGCCTTTATTCACTTCGC
TGTGTTCTCAATTGGTTAGTTGATGAATGAGAGGTAGGTGCATAA
Found at i:1439927 original size:22 final size:22
Alignment explanation
Indices: 1439902--1439944 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
1439892 CTCCATTTAC
1439902 ACTTTGAAT-AAGCACATTACCG
1 ACTTTGAATAAAG-ACATTACCG
1439924 ACTTTGAATAAAGACATTACC
1 ACTTTGAATAAAGACATTACC
1439945 TATTTCTTCA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 17 0.85
23 3 0.15
ACGTcount: A:0.40, C:0.21, G:0.12, T:0.28
Consensus pattern (22 bp):
ACTTTGAATAAAGACATTACCG
Left flanking sequence: Indices 1439402 -- 1439901
CTGTAGTTCAGAGCTTTTCGCCTTCTTTGGCTTTTCATTTCAAAAGGAACGCACCTTAGCGTCGC
CTTGTCCTTGTATTAGAACTTGACACGTATTAGATAACAAATGAATTTCACACAGAAAAGAAAGG
AAATAAATCCATTAGCTCCTCTTGGTTTACAAGATCCAATGATTGTTAACACAACAAGTACACCT
AAAGAGAAATACTTGATCTCTCTAACAATAGCAGATAACGATCAACCCATTCACGACAAAGAGGA
ACTATTTTCAAAAGTTGGTTCAATGTTTATTTGTTCACTCACGTGTTCTAATAGCAGTGGAGTTT
ACTTCAAGCGTCACCATCATGTTTTATTGTCTCTTGCTTCACCGCTACAATGGAGAAACGTGGAC
GCTACCATTCGAAAATCATTTCATTCGTGTAATGTTCTGCAAATTCAATCATTCTTTAAAGCACT
TCAGTATATTCTTTCAGTGAAGAGCTTTAGGGGACCTCCATTTAC
Right flanking sequence: Indices 1439945 -- 1440444
TATTTCTTCACCACACTAAAGAAATAGTAGCAGCTCGTGCACCAATGTTTTTAGCACTTTAGGAC
CATAACCTACTGAGCCAAAGAAGGCCGATTTACTATTTCTTTACTAAACGAATTATGACACTACT
TGCACATACACTGCCATACTACCATAGACAAATCTATCCCCTACCACGGACTAGGCACGGAGTGT
TGAAGAAGCAGCAGGTCAGCCAATAAAATAGAAAGGGGAAGCTACGTCCCAGCGGTCAGAGTGGA
CCAGTGATTGTATCACCAGAAATGACCAGAGAACTGCATTATGCAAGTCAAAACCCCGCCTGCTG
TGGCTCCACCTGCTTTAACTTAACTCCAAGTGTAACTTATACATACTCCAAATCCCCCCTCCCTC
ATTTACTATATGACACCTCACTATGAGCGTAACCAAATCAATCCAAAATAGAAGAAAGAAATCGG
ATCAACCTAGGAGCGTAAGAAATAATAACGAAGTCCAGCAGCAAG
Found at i:1459399 original size:20 final size:20
Alignment explanation
Indices: 1459374--1459418 Score: 72
Period size: 20 Copynumber: 2.2 Consensus size: 20
1459364 AGACTGAAAG
* *
1459374 ACTCCAATTTTTCTCGTCTA
1 ACTCCAATTATGCTCGTCTA
1459394 ACTCCAATTATGCTCGTCTA
1 ACTCCAATTATGCTCGTCTA
1459414 ACTCC
1 ACTCC
1459419 TAGAATCCCC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.22, C:0.33, G:0.07, T:0.38
Consensus pattern (20 bp):
ACTCCAATTATGCTCGTCTA
Left flanking sequence: Indices 1458874 -- 1459373
CCTATGAACAGAAACTCCCTTCTGGGAGAGCATCATTCCATGCCTTCGAGTCTTTTTTGTCAGCA
ACCTTGTGTAAGAGTAAAGACCAGTGAAAGCTACTGCTACTTACTGCGGGCGGGTAATTATACTT
ACTAAATTACTAAAAAACAGCGCATGAGCCATGTTCAAAAATCAGATTCTGAGGAGCTTCCCTTG
GTTTCAATATGGCTATCCCAAACAATCCAAGAAATAGGCAAGAACGAGCAATAACGAAGGAGCAA
GGAGAGGGCTGTGTCTTAGAATACTTTTCTTGATAATATGCACCTTCCTTTTGAACCATCATCTT
TGATTCAATTTTGAATCGATCTGTCTTGACGTCAGGGACTCGCCTGAAAAGAAACTTCGCCCCAG
TAACGGTAGAGGAGATATGAGGGAGTTGCGTTACATCGCCCCGGGGGGATATGTTATCAGTGTTC
AGTATCGCCAAAATCCACTTTTCCTGCCATTTGAAAGACTGAAAG
Right flanking sequence: Indices 1459419 -- 1459918
TAGAATCCCCGACGGAATCAAACTGGTTTGCTTTCAACCTCACTTGCTTTTTACCAAATTCCATA
GAAGCAGAAAACCCTCACTTTACTTTCTCAAAAGATTGCTTGACCAGAGGCATATAGCATAAATT
TGCATTTTTCTTACAACTAAAACCGTCAGAAAAGCAAAAACTCCAACGCCCGCCACTCCCGACAC
AAGCAAGAGAAGGAAAACGGCTATTGAATTGCTCTTGAACTTTCATTACCCTAAAGGCGCGAAGC
GGTGCCGCCCTCTCATGTACATAATTTTATCTCTCGCCACGGTCGGTAAAGACTGAATCTTAGTC
TCATACTCAACTCTAAGATCTCGTAATGGTATGAGAGTATAGATTACCCTCGTAAGCTCTTTGCT
TTTACTAAGTTTGAGGGGTGTTATATATTTTATATAGCTACGCTTAATATATCCCATCTTCCTTG
TTTGGGTTCTCTCTCGTAACAGAAGGTACGGAGTGATTGATTAGC
Found at i:1466971 original size:23 final size:23
Alignment explanation
Indices: 1466937--1466981 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
1466927 TAGTGTAATA
1466937 ACTATGAAAGCTACCTACTCTTG
1 ACTATGAAAGCTACCTACTCTTG
* *
1466960 ACTATGAGAGCTCCCTACTCTT
1 ACTATGAAAGCTACCTACTCTT
1466982 TCAGTGACAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.27, C:0.29, G:0.13, T:0.31
Consensus pattern (23 bp):
ACTATGAAAGCTACCTACTCTTG
Left flanking sequence: Indices 1466437 -- 1466936
CTCTTTTCATTTCATAATCATGATTGACTTCACAGACTGGTTGCGATAATCCATATGATATAGAA
ATCGTGGCAGGGAACGACACCCTCCTATTCTCTTAGACTGCATGGGGGGATATAAGGATGGTCAG
ATTGAGAGCATTGAGCATTGTCGTGAGCCTCTCCTACGGTTATTGGAAATGGTTGGCATACTTTC
AATTTCCCTAAAGAGCGCATTCCTTTTTATTAAAAAAGTTGAAGTTGTTGCGTTTTCAGGTAAGT
TTCAAACAATACAAGTTCAAGTCGTGTATCAAGTAGCGCGAAAGAAACCAAATAAGATTGAAGAC
TCACGGACATGCCCTAGAGCGAATGGACAGGCCCAATCAAGCAACTCGGTCTTAATTAGTATGCT
TACTCAGTGCTTCAAAAGTCTTTGGTTTCGTTTTCATAGGGCAAAAACACCTTCAACCAGGGACA
GTAGTGGAACCCAGATTCGATTCAACGAGTGGCAGTAGTGTAATA
Right flanking sequence: Indices 1466982 -- 1467481
TCAGTGACAAGCAAGCCTCCCTCTTTCGAGAAGCAACTCTCTCTCTAATACCTACCTTGTAGTGC
TGTCCGAGCGATGAATTCCTATTTCTAATCTTGTTGGCTTTCCTGAGTCATTTCAATTTATTCAT
TTATTTATTGCGCTGGTACGCGTATTAGTAGTTATTAGCCATGACTTGCCGCATGAATGCGGGTA
ATAGAAAAGTAAGTTATCCTCAAAAGTATAGTCGTTCAGTTTCAATTGACACAGCTTCTTCGGCA
TGGGCTCTAGAAGTGTATAGCCCCGTTATCCGCCGATCAGCATGTTATTTCCAAAATCAATATGT
TAGTTACTTTTCAATTTGCTATTTTTGTTTGCAACTCTTTCATAGATTCAGCACATCCTCTTCTA
TCCCCTGAAGTAGTTCAAAAGCCTTATTGCGAAATCAACCCACTTTAAGAGAACCCCAAAATGAA
GTTAAGTTTTCCGCGAAATCTATTTCAGTGCTGTTTTTGTTAGCT
Found at i:1473353 original size:23 final size:23
Alignment explanation
Indices: 1473299--1473344 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
1473289 CATTAGAAAC
*
1473299 AGAGCTTAATATGGGTAGCTATT
1 AGAGCTCAATATGGGTAGCTATT
1473322 AGAGCTCAATATGGGTAGCTATT
1 AGAGCTCAATATGGGTAGCTATT
1473345 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.30, C:0.11, G:0.26, T:0.33
Consensus pattern (23 bp):
AGAGCTCAATATGGGTAGCTATT
Left flanking sequence: Indices 1472799 -- 1473298
CCCCTCCGATACAAAGGATAGGAGTTGTCTCCCTGAAGGTCTCGTTGAACTGCTTCGGAGAATTG
AATCTTGACCATTACCATCACCGGTATCACCTCCATCTTGACTAGACCCAGCATCACCATCACTA
TTACCAGACGGGCTATCACCATCACCATCATCATCATTGTTTCCACCATCATAAGCATTGTCCTG
ATTTTCGGGAATCTACTTTTATAAGGAAGAAAAACAAAACCATCCTCAAGAATGCTGCTCTCAGC
ACCATACATAAAGTTCAAGTTGAGACAATTTATTCTATGATACGAGTCAAAGCAGGTGGGTGTAT
TCCAAGCACTCGAAGGAGAGGAGCCTTTTCCTAGTTCAGAAGATCTTAGCGTTACTGGTCCCTGG
GGAAATAAAGTCTTCCCATTCAAAGACACCATAAGTCATGTATTTCGCAAGCATTTTGTCTTCGG
GTAATGGTTTAGTTGATCGTTAAGCGGGGTGGAAGCATTAGAAAC
Right flanking sequence: Indices 1473345 -- 1473844
CTAAGTCAACTAAATCGTATAAAGGGCAATGGTTAAGCGCCAACAAACAAGCATTCTTTAGTATG
TATTCAAAGAAGGTTCGATGTTATAGCACTGGCATAGACGAATATTGCTTGCTTGCCTGATGTAT
GCTATTTACATGAAAAAGACAAAAAGCGTCCCTCACAGTCCAAAGTGATAAGCTGAAGAAGAGTA
GTGATAAGCTGAAGAAATTACCTTACTGAGTAAACATTTCTTCTTTACAACCTCCAAACACACGA
TTTAGGAGATGTCTTTTGGAGTGCCCTATTCGCAGTGGAACCCTTCTGTTACTGCTACGCCCTTG
GCTTCTTTTATGTAGTGTCGTGATTAAGCTACCTATATGTTTGCTGTCTGAAACAACGTTCTAGC
TTGTGTATTCTGATCACACACTGTAATTCTGTAAGGACACCTTTCTTCACAATTGAGATGAATTA
TACAGGAAAACAGAAGAGGGCGCTAAGAGAGTGCAAAAGTATGAA
Found at i:1476810 original size:12 final size:12
Alignment explanation
Indices: 1476793--1476817 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
1476783 TTGGTATCCT
1476793 TATATGCTTCAA
1 TATATGCTTCAA
1476805 TATATGCTTCAA
1 TATATGCTTCAA
1476817 T
1 T
1476818 GGGCGTGGCC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.16, G:0.08, T:0.44
Consensus pattern (12 bp):
TATATGCTTCAA
Left flanking sequence: Indices 1476293 -- 1476792
GTAAGCTCAAATTGGAAAACCACAACTATTGAATCAACAAGGCTTTCCCCGGGGAGTAATCACAC
TTTTTATTATTATCCACGTCTGCTAGATTATTGTCCGAGATGGAGGTCGCGTAGTGAGGTAGGCC
CTATGTAAGGATCGCCTTTCGCTACCTAGAGTTCTCTCTCCTGGGTCAAGGAAAACTTTCGCTTC
CTAAAGCAACGTCCTGACTTAGATGGTGTGTTCCCCAATCCAAACTCGGATCAGTTGGCAGGCAG
GTGGATTCTGTGCCTGACTACGAAACTCTAAGCTATTATTCGATCTCGAAGAAATCCAGCCTTTC
GGAATAGAAATAACCAATCTTCTTCTTTTTTAGAATTCCTCCTATATTGAGTCTTCAGTTAGTAA
ATAGGTCAAATGTGCTATAGCGAATTCGGCGAGGAGGTAAAGAAAGATTTTCCTTTATTCTCTTT
TGGGTAGATAAAGATTTGGTATACTAATGGTATCTTTGGTATCCT
Right flanking sequence: Indices 1476818 -- 1477317
GGGCGTGGCCATTTCTATTTACTGGTTAGCCTCAATCAAGGCTACTTGACTTAGTGGAGTCAAAA
TTCGCGCTTTTTCTTCACTTTCCGCTCAAGTGAGTCGCACTTCCACCTCACCTAATGAATGTGCC
GCCTGCCGTACGTAGGTGCGCCGTACACGCCTTTTTTCCATTATCCGAGTCCACACTAAGGGGTA
CAATCAGCATTTCAATGCTTACTAGAAAAATGGGATTCCTAGACTAAACTCGTCAAATACTAGTG
GCTGATAGTACTCTTCAACATAAGCCTGATAAGTCCAAATTATCATCTTTATCTTCACATATTTT
TTAGCAGTGCAAATAGCAAGATTCCTTCAGTTTGCTAGACAAAAGCCAGCAGAGAGTTGTCAAGC
CAAGTCAATATACATAGGTATATTCTTATTTATAGGTCGATTAAGAGTAGTAATGGGTGAACTTC
TTTATCTATAGACTAATAAACTGAGTTGTATAGAAAGAGCCAAAC
Found at i:1478379 original size:22 final size:23
Alignment explanation
Indices: 1478336--1478392 Score: 73
Period size: 22 Copynumber: 2.5 Consensus size: 23
1478326 GACTGTGCTT
*
1478336 ACTTGACCAGTACTACCTGACTG
1 ACTTGACCAGGACTACCTGACTG
1478359 ACTTGACC-GGACTA-CTGGACTG
1 ACTTGACCAGGACTACCT-GACTG
*
1478381 ACTAGACCAGGA
1 ACTTGACCAGGA
1478393 AAACAACACT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
21 2 0.07
22 17 0.57
23 11 0.37
ACGTcount: A:0.28, C:0.28, G:0.23, T:0.21
Consensus pattern (23 bp):
ACTTGACCAGGACTACCTGACTG
Left flanking sequence: Indices 1477836 -- 1478335
AGAAGGTGGAATAGCCTTACAAGATATAAATGAGAAGAAGATGGAACCGTCAGCCGCATCAACAC
GTGCTTTTACTTTAGCTGATGACTACTTTAATGAATATAGATCGACACAAGGCTGGGTGCAGATC
GCTAGAAGCTAGTAGATGGTTCACTTCCCAAGTGAGATGACTGGCCAAAAAACTTGGCATACTTC
TCGTAAACTTGAAAGTCAACATCTTGACCAGAATCGGTCGATACTGATCCTCCCGCCTATGAGAC
TTTAACTGAAAGACGTGCGTGCTGCCAATGCATCAAGATATTTATTTGTATTTGCCACACGCAAC
GAAGATATTGAAACCAATACGTAGGATCCAAGGAAAACACATGCCTCAGTTTACTTTGAAAGTAA
CCGGAATCCAACTTTCCGACTTACCCAACTGTATAATTCCTACCTTTTGCCTATGGGAAAACCGA
AGGAATGAATATGCTTAACACTTACTAACAAAAACGACTGTGCTT
Right flanking sequence: Indices 1478393 -- 1478892
AAACAACACTACAGTGGTTCATAAACCGGAGCCTCTCTTACAGTCCCAGTCTCTAGGTCCAGTTC
TGGTTGAACTAAAGCACCAATAGCTGTAAGACTAATTCCTTTTGCTGGCGGAAGAAAAGCAAGTG
AAAGTCAGCAACTACTCCAAACTTGACAACTAAGGAATGAGAGTAGATACCCTGGCCTCTATTAG
CCAACATGCCCCTGCTATGAAAATGCCAATTCACTAGCAAGGGTGAAACGTCGAAGCAATGTACA
CGCTGTCGGGTTCATTTGGTATAGGCTTTCAAACAAGAAACTACTATAAAACTTGCAGGAAAACA
CATGTTTGGTGTGGCAGCATATAGCTCGACTTTCCCATCTCCAGCTTGAAATGATAATAGATCGG
GTTCAGCATAGAAAGGGAGACCAATAGCTCACTTGTGAAGAAACCGCGTATCACAAAGAAGAAGT
AGATTCAAAATTCTCATCTCCGCTTATGCTCTAGCTTGCTTGGGA
Found at i:1481551 original size:28 final size:28
Alignment explanation
Indices: 1481519--1481575 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
1481509 CTGGAAAGAG
1481519 AAGAATTGTGCATCGAGTAATATCATAT
1 AAGAATTGTGCATCGAGTAATATCATAT
1481547 AAGAATTGTGCATCGAGTAATATCATAT
1 AAGAATTGTGCATCGAGTAATATCATAT
1481575 A
1 A
1481576 TAGTAAAGTC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.40, C:0.11, G:0.18, T:0.32
Consensus pattern (28 bp):
AAGAATTGTGCATCGAGTAATATCATAT
Left flanking sequence: Indices 1481019 -- 1481518
TCAAAACCAGATTGCTTGTCTGTTCGGCATGAGTGATAACAAGAAAGAGTACTGTTGTCAATTTG
TACATTTGCTTTGATACAAATATCCTTTCAATTCTTTTTCAGCGTGCTGTTGCTTGGCCCCATGC
ATAATTCCACAATGCATTCAGGTCATCAACGTACTCCCAAAAATACATAGGAAGAGTGCAATCAG
CCTTGGCAAAAAGAACAAGAGAAAAAAGGTACATAGTTCACATAGAGACCCCTTCTTCCGGAGTG
GCAACAGCAGACTGAGATAACTCAGCAAGTAATACAGCCGAAAACTTTTCCCACGAAATAGTTCC
CTTGTTCGGGAAAAGCCGCCTTTTTTGTTCTACACAGACGAGTAACTACTAATGTGGTCTTTTTG
TTCGTAACATTATACGTTACTCACTGAGTGAAAAGAGTAGTTACTCACTGGAACGAATAGTTAGA
CAAGAAGGAAAAGAGTTGGCAGGAAATCGAATCTCCTGGAAAGAG
Right flanking sequence: Indices 1481576 -- 1482075
TAGTAAAGTCAAAATTCACTCATTAAAAGATGACAGTTTTAGTAAGCGCGGGTGTGGTCCATCAT
CGGAAGTGAAAGGTTGAGGAGAAGTCATTCAGTAGGCTTTGGCTCATTCAGTAGGCTTTGGCATT
GAATAAGCTCTTTTGGATAATACACTTCTATGGTTTTGGCTACTAGTCCACGTGCAGCCTTACTT
CCTTTTTGACTTTCTTGATGCTATGGGCAAATAGATATCCCTTAAATACAGTGCTACCTCAGCTG
CGAGGCAATGGCGAATGTTTGCGAGAGAGGACTATGGGCAAAGCTATGCTAAAAAGTAGGTGGGC
GACAACATGGCCCTTGCCAACTCTTGACCTTAGATACAACGCACCTGCCGCTTAAGCATATCTCA
AAAGCTCGCGGGAAGAGAAGGATGGACTTACTATCAAATGCATCTCCGCGTTATCCGCTTCCCAC
ACTTACACACCAATAGAAGACAACAGAGCAGAGGTTACGTAAATA
Found at i:1481689 original size:19 final size:19
Alignment explanation
Indices: 1481665--1481702 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
1481655 TGAGGAGAAG
1481665 TCATTCAGTAGGCTTTGGC
1 TCATTCAGTAGGCTTTGGC
1481684 TCATTCAGTAGGCTTTGGC
1 TCATTCAGTAGGCTTTGGC
1481703 ATTGAATAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.16, C:0.21, G:0.26, T:0.37
Consensus pattern (19 bp):
TCATTCAGTAGGCTTTGGC
Left flanking sequence: Indices 1481165 -- 1481664
TTCAGGTCATCAACGTACTCCCAAAAATACATAGGAAGAGTGCAATCAGCCTTGGCAAAAAGAAC
AAGAGAAAAAAGGTACATAGTTCACATAGAGACCCCTTCTTCCGGAGTGGCAACAGCAGACTGAG
ATAACTCAGCAAGTAATACAGCCGAAAACTTTTCCCACGAAATAGTTCCCTTGTTCGGGAAAAGC
CGCCTTTTTTGTTCTACACAGACGAGTAACTACTAATGTGGTCTTTTTGTTCGTAACATTATACG
TTACTCACTGAGTGAAAAGAGTAGTTACTCACTGGAACGAATAGTTAGACAAGAAGGAAAAGAGT
TGGCAGGAAATCGAATCTCCTGGAAAGAGAAGAATTGTGCATCGAGTAATATCATATAAGAATTG
TGCATCGAGTAATATCATATATAGTAAAGTCAAAATTCACTCATTAAAAGATGACAGTTTTAGTA
AGCGCGGGTGTGGTCCATCATCGGAAGTGAAAGGTTGAGGAGAAG
Right flanking sequence: Indices 1481703 -- 1482202
ATTGAATAAGCTCTTTTGGATAATACACTTCTATGGTTTTGGCTACTAGTCCACGTGCAGCCTTA
CTTCCTTTTTGACTTTCTTGATGCTATGGGCAAATAGATATCCCTTAAATACAGTGCTACCTCAG
CTGCGAGGCAATGGCGAATGTTTGCGAGAGAGGACTATGGGCAAAGCTATGCTAAAAAGTAGGTG
GGCGACAACATGGCCCTTGCCAACTCTTGACCTTAGATACAACGCACCTGCCGCTTAAGCATATC
TCAAAAGCTCGCGGGAAGAGAAGGATGGACTTACTATCAAATGCATCTCCGCGTTATCCGCTTCC
CACACTTACACACCAATAGAAGACAACAGAGCAGAGGTTACGTAAATAAGGGTTTCGTATATAGG
ACAGCATCGTTAGTAGCGTTTACAAGATTAACGCAGGGACTTCGGTACTAGGCTTCGAACGATTC
TGACCCAACCTAGAGTTGCCTCTCTTCCTCTCATAGAGGGACCCT
Found at i:1485396 original size:27 final size:27
Alignment explanation
Indices: 1485358--1485409 Score: 95
Period size: 27 Copynumber: 1.9 Consensus size: 27
1485348 ACAGTGGAAG
1485358 CAAGTAAAGCAATATGACACTGGCTCA
1 CAAGTAAAGCAATATGACACTGGCTCA
*
1485385 CAAGTGAAGCAATATGACACTGGCT
1 CAAGTAAAGCAATATGACACTGGCT
1485410 GAGCTGAAGA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.38, C:0.21, G:0.21, T:0.19
Consensus pattern (27 bp):
CAAGTAAAGCAATATGACACTGGCTCA
Left flanking sequence: Indices 1484858 -- 1485357
TGATCCATCAACTCGTGGCTTTACATTGAGAACAAAGCTTTGCCGAACGAGCTTCTTTTATTGGA
ACGAGTCTATACAGCTTATTAGACGACAAAGCTGCTTGCTTATCGGCTGTTGTAACCATTGAATC
CGATTAGCTACGATCAATGAGAATCTAGTAGTATAGCTGCAGACAACAAAGTAGCTGTAACGTGA
ACTGCGCTGTGCTCATCAAAGTGTAGGAATTACCGTGCTGAATGAGAAAATCCCATTCCCATTTC
ATTTGTGAGGCAAAACCTCCCTACTTTAAGGCGCAAGAGAATAGGACTGGTGGGAAGAACAGGTT
GAGTCCCTTGGCATTTTTTTTCCTTAGGATGGTGTGTGGAGGTGCCTGTTAGTCCAGTCAATGCT
GAGCCGTACAGTGTGTAACAGGGTAAGGGTTGTTCTGGTATGCGGAATAAAGGGATGATAAGGAA
CTAAGTAGGGAAGAGCTCTCCTTTGAAGTACTCTAACAGTGGAAG
Right flanking sequence: Indices 1485410 -- 1485909
GAGCTGAAGAACAAGTTTCTAGCTGGTGCCAGTTGCTATCCAGAGTGTGCAGATTAGCATAAAGT
TGCAACTTATACTCCACAGCCCCAGTGTAAGAATGCTTTTTCTTACCAGGTATGGATTCTGTTCT
CAATGCATTTCCCTTTATCCAGCCGAAGTGGAACTGAGTTCAATTTTGTATACTTTAAACATGAA
CGTAAGTGTGCCGTAGTAAGAATGCCCTTGAAAGGTAAGTAAGTGAAACCAAGTGAAAGAGATCG
GGCCTTGTTCCACAGCTCCTCCCTTACCGCTTTCTTCTCTTCTAGAGAAGTAATAAGCTGCCTGT
TCCCTTTTTCACTATATGCTATACTCTCACAATGGTAAGAAGCTTTGGTTGTAACGGATTAGTGC
TCTTTGTGGATAAAAGGTATGCTTGTCTCTGTATGCTTTTCTTGAAAGAATGAAGGATTCCCTGT
GGAATGTCAAAATCCCGGAAGCCAACGCTTCACCCTTCACAACTT
Found at i:1489008 original size:33 final size:33
Alignment explanation
Indices: 1488966--1489031 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
1488956 TCTTATAATA
1488966 TAAGTTGATTTCTTTCCAATCCATTCCACATTG
1 TAAGTTGATTTCTTTCCAATCCATTCCACATTG
1488999 TAAGTTGATTTCTTTCCAATCCATTCCACATTG
1 TAAGTTGATTTCTTTCCAATCCATTCCACATTG
1489032 AACTAAAATG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.24, C:0.24, G:0.09, T:0.42
Consensus pattern (33 bp):
TAAGTTGATTTCTTTCCAATCCATTCCACATTG
Left flanking sequence: Indices 1488466 -- 1488965
GGGGTATTTATTGAAAGATGCGTAATAAAAAGCCGAAGCATTTGGTAGCTTTGCCAGAGCACAGG
ATAGAACATAGTAAAAAGCACGGCTGGCTAGTAGAGTTCTTGTCATTTATCAAGCTAGTGCTGAA
GCTTCTGTTTTCACTTCTTTTTTTCATAAACTCATATATAGTGTAGTTTGTATGATTAGTTTTGA
TTATTTGGAATTGGTTCGCTACGCCCTTTTTGTTTCTCAATCTACCATCAAGACAAAGCGGGCAC
TATGGTGAGACGTGAAAACACCCGATCCCTTTCTGACCTCGATATGTGAAATCGTCTTGCGCCAT
ATGTACTGAAATTGTTCGGGAGACATGGTAAAAGCCCGCCAGAATAGTGTATCAAAAAAATACAC
TCACTTGTTTTGATCACTTGGTAAGGGTAGGAAAAAGCGAGGTAGGTCTTTGGGAGGCGAGACCT
ACTAATGGGGAAAGACGTCAGGTGGGGTTTTGTTTTCTTATAATA
Right flanking sequence: Indices 1489032 -- 1489531
AACTAAAATGGGTTATGCTTAACACTGGGAAAAAAGCAACGAAACCAAATGATCCGCATTTCCCG
GAACGGAATGAGAAGAAAAAACCGATCCGTGGATCGATTCTCATGTTCCTAAAGGAACAGAATGA
ACATGACGAAAAATGCGCAATAATACAGAGAGATTTCGAGGTATCACCAAACTTTGGTGCACCTT
TAGTACGGTAGTAGGCTTCTTTTGGAACAAACCTTAGCTAGCCACTAGTGGAGAATAAACTCCTG
ATTTTGGTTTGGGGACATGGGTAGGTTGGGTACCCAATGGGTTTCTACGGAAAACCGCTGATCTA
TTCTTGCGCTTGGGTCCATCGACACAACGCCGGGGATGCGAGCAGGTAGGTCCCCACAAGGCACC
TTTCGTTATTGCTTGACGGGCTATATATATAAGGCCCGGAAGGCCTATTCCGCTCTGGAAAGGCT
TCTATCTTCACTGAAAGAAAGATGAACTCCAGCCGCCAGGGTAGT
Found at i:1503886 original size:16 final size:16
Alignment explanation
Indices: 1503865--1503895 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
1503855 TACCTCCTAA
1503865 GGTATCTATATGCCTC
1 GGTATCTATATGCCTC
1503881 GGTATCTATATGCCT
1 GGTATCTATATGCCT
1503896 ATTGCTTTCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.19, C:0.23, G:0.19, T:0.39
Consensus pattern (16 bp):
GGTATCTATATGCCTC
Left flanking sequence: Indices 1503365 -- 1503864
TTTGACTCCGGCATAGTTTTTTTTTTGAACATGTCAAACTCCCATACCCATACTACTTTCTGACT
TCGACTTCGATCCAGTGAGTAACTACTAATGTATAGAGTGAAAAGGGATGGTATGCTTTCAACAC
TGATTTTATTGGTAGCTAGGGAGGGTTTTAACCTTACTACTTCCGAAAGTACTTGATTAATAAAG
TACACTACATTCTTTTCTTCGTAACTTAATTCTACCGCTGCGCGCCTTGTCAACTAGGCAAGAAA
GAACTTGCTTGTTGAAACTGATTCTAGCTTTACAAACTACACTAATGAAGTTAGAAACTACACTA
CTCTCTCCTTACTACAAACTTTTCTTTAGAAGACAAGCGACGGAAAAAACTTGAAACACTGAACA
ACAACTTGTTGGGATTGAACTATTTGCTTTGTTCCTATCTCTTCTATTAGTTAGGAATCTATCTC
TGCTTCCACATACAACTTGAATTTCTTACCTAGCTTACCTCCTAA
Right flanking sequence: Indices 1503896 -- 1504395
ATTGCTTTCTCGCACCACTCTACTTGCCTACAAGTAATAACTCGAGATGCCAACTCTTTTACTAG
CTAAAGCAGTGAAACAGGCTCCCCAAAGAATGAGAATCGAGTTGGGGGAAAAGGTCACTGCCGAG
GCCGGTAAGCTTATGGATGCCGCTTTCATCCGAGATGAATAAAATGCCGACTGGATTGCCCGTCC
CGCTCAAGAAGAAGAATGGGCAGATACGAGTCTGTGTCGACTTCCGAGACCTCCATGCAGCATGC
CCTCAAGATGATTTGACCCTGCCGATCACTGAAGTCATCATAGACCACACCTCATCATAGGAAGC
AAAGCTCCCTTCATGGATGGGTCCTCAGGCTACAACTATATCCTCATTTTGAAATAGGATTAGAA
GCTCACCGCGTTTCGCACACCCATCGGAATCTCTTGCTCAAAAGTAATGTCCTTCCTTCTCCTCT
GACGTTTTCTATCCCTAGAAAGTCTGTCTTTTCTTTAAGGTTTTG
Found at i:1509696 original size:16 final size:16
Alignment explanation
Indices: 1509675--1509706 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
1509665 GACTTTGTTT
1509675 TTCGGTACTGAAATAG
1 TTCGGTACTGAAATAG
*
1509691 TTCGGTACTTAAATAG
1 TTCGGTACTGAAATAG
1509707 GGGTTTCCTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.31, C:0.12, G:0.22, T:0.34
Consensus pattern (16 bp):
TTCGGTACTGAAATAG
Left flanking sequence: Indices 1509175 -- 1509674
GTATCAGATGGATAAGAAAAGTTTGTCCGATTAAGATGATGATGATTCCGATGATGAACCCGCTT
CAATTTAAGATGTCTCAGATTTGAAATAATTAATATCTTCCTGTTCCCTAATTATCATCCGGCTT
TAGACCTTTACCTAGAATATTTCATTCTGCTTGATAATGGTTTAGTTATTGCTATTAAATGTGCA
TAATGTTCTGCCCCTTGTATTAATTTCATCCTCACTTAGTGTCTTACGTAAGACATAGGGCCCAT
GCCCGGCATACCGGCTGATTTGGCTTTGGTTTGTTTCATGTTACTTAGTCTCCATTTGAAACAAG
GCTTCCCCTTCTATTCCGCGTACGATATTTCTTGTCCGATAGTGCTTTTCGTTCGTAACATGCCT
ACGTTACTCACTGGGATAAAAAACAAGGATCACATCCCCCTATTGCTTTCGTTTTCCAAATAGAT
TTCTGATAAAGATGGGACCCACTCCCCCAAAACTAGACTTTGTTT
Right flanking sequence: Indices 1509707 -- 1510206
GGGTTTCCTAATGGAAGAATCAAAGGATTCCCTTGACCAATGGTTGTATGAGTCATCACCCTAAA
TATTCAAGTAGGAGCCAGGAACCGTAGCCGCAGAAGCCACATTCGAAGGGAAGCAGCAGCTATAG
GAATCACATCAGGGGCGTAGCGGTGACTAGACAAATCCAATAAGAACTTAGGGCTGGGTTCTATT
CCCTTACCGAGAGGGGGGTGAAGGCTCGACTTTCATTACAGTAAAGGAATGAAACATACCTTGCA
ACCATTACAGCTAAAAACGAGGGAGAGGCCTAACGCAAATCAAGTGGCTCCTTAGGTAGTCCATA
GGTAGTAAACGGTGACTCTATTGACACCGTGAAAGGATAGAGTTGAGAAGGTAGACCGTGTAGCT
CAATCGATAGGGAAAGGGTGGAACCAAGTCTACTGGTTGGATAATAAGGTCTTTTTCTTTACCCA
AGTGGGAAGGGCGGACTATTTTGGAATTGAGTTGAGTCTGATCCC
Found at i:1511309 original size:13 final size:13
Alignment explanation
Indices: 1511291--1511315 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1511281 AGCATCCAAG
1511291 ATTTCGTATTCAT
1 ATTTCGTATTCAT
1511304 ATTTCGTATTCA
1 ATTTCGTATTCA
1511316 GCGTGTCTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.16, G:0.08, T:0.52
Consensus pattern (13 bp):
ATTTCGTATTCAT
Left flanking sequence: Indices 1510791 -- 1511290
ATATTGAAATTGACCGGCTCGTCACACACACTAGAAATCATAGCTCTAGCACAACGAAAGTATAC
CCACGAAATGTAAGGGGCAAGACCAATTTCCCTTGAAAACCCAATTGGCCATAGATAGTCAGCTC
AAGTCTTCTTTTCTTGTATGGGAAAGGCGAAGCTCTCAAGGCTTGCTGTGGAGGGAGGAAAAAGC
ACACCACAAGATTTATTATGTATAAGTTCAAATCAGAAATATCCAATAGGTTAGGTTTTGTACTG
CTACAAAAGACAGCTCGCTCGGAGACGAGCACAGTACCCAGCCCACAAGACTAACGTCTACTGGG
CCCAGCCATACCAAAGGAAAGTCAAGCTATTTCAAGAAGAAGGTACACTTTTAGGTATAGGAAAA
AGAGGATAAGAAAATCTATATAAAGTCAAGGCGGCGCGGCGTCCGCCTTGGAGTCACATCATAAA
AACGAATAAGAAAGAGCTTGTAAACTCTATTTTCAAGCATCCAAG
Right flanking sequence: Indices 1511316 -- 1511815
GCGTGTCTATTTTCAATTCGATTTGGTGTGTGTTGTGCTATTTCGCGATTCATTTTTAGGATATT
CTGGTTCTATTTTCTATTTATTATGCTTTCATGTCGGTTTCGGTCAATTCTGGGTTTTGGCCGGC
CCCCTCTAGTGCGCCCACTATTTCCTATTTTCATTAGCCCTTTGGCACGCGTTTGGAAGCTTCTG
GTTCTTGAATGGAGAAAAAAAATGCTTAACACGAACATGAATCGATGTTACTTGAGTCCTAGGAC
TAGCGGAATGGTAAGGCCCTATTTTACTAGTGAATGCTTTACGAATCGCTTGTTCTACTATTTTA
CAGTGAGGTTTTTCACAAGGGAGTTGACAATGTCGAATTTCTGCCTCTCTACTCGAAAGGAGTTG
GACAATAACTAATAGATCCCGAGAAAGAAATGCCAGTAAATCCGGCTCCTGAATTGGATTCCACC
GTAGATTTCTCCCCTACTTCTTAATCGGATTGCAACCTTGATCGA
Found at i:1522436 original size:19 final size:19
Alignment explanation
Indices: 1522412--1522449 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
1522402 TAGCCATTCC
*
1522412 AGCTATGTGTATATCCCTT
1 AGCTATGTGCATATCCCTT
*
1522431 AGCTATGTGCCTATCCCTT
1 AGCTATGTGCATATCCCTT
1522450 TTTAACACAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.18, C:0.26, G:0.16, T:0.39
Consensus pattern (19 bp):
AGCTATGTGCATATCCCTT
Left flanking sequence: Indices 1521912 -- 1522411
GTCATTCCTCTCATTGGCAGTATGGAGTGAGTTGCGTAAGTAAGTTTCCTATCAGCGGGATTCAA
TAAGTAGGATGAACCCATATCCAAAAGTAATCAATGGGATTTTCTTCTAACCTTGCTGTGTTTAC
GCCCTGTGAAGCATATAAAATATATACAGGCAGTAAAAAACAAGTAGAAGAAGAGTAGTTCAACG
TTTTATTGCTACAAGAAAGTGTAACAAGGACAAGTTTCCTTTTGTATAAAAAATTGACAGGTGAA
TTTAATGCTCTAAGAAACTTTCCCCTGTGAGGTAATTGGAGGGTCGGAAGATAGAATTTGATCCT
TTATTCAAGAAGTACCCTCTCCTCTGGTAGGCAAAGAGGCATTCCAAGAACTCACTCCTATGGTA
AAGCAAGAAAAAACCTGTTATTAGCAATGTTTGTTTAGTTTTCTCTCTGGTCTGCTTACCTAATT
TCTTTTAGAGCGCACCTACCTGTTTTTTACTTGTATAGCCATTCC
Right flanking sequence: Indices 1522450 -- 1522949
TTTAACACATCAACCTTTTACTGCTTATCTTGTCTATTTTATTACCTTTACTGCTTATCTTGTCT
ATTTTATTACCCTCAACAACTACTTAGTTTAGCCCTACTCACCTATTCCGACTTCTACGCGTTAC
GCCATTTCGTTCAAAGAAGCCTGTCTCGGTTATCTTGACTGACCTCTGCTTCTCCTTTTATACCG
CTTTACCTATTCCTCACAAGCCTATCTAAGGCAAGGCTACCGCTCTAACACTCAGAAATCCTTTC
ATTCCTATCTTCTTTACTATAAAAAGAACTCAGTGTATTTCCGAGAAAATCTTCTTGATTTTTTG
TGTAGCTATATTCTACCTACCAACTACTACTTGCCTTGTCTCATGCTTGCTTTAAAGCCTGTCTC
GCAACTCATATCAGCCAGCTTTTACGAGGGTAAAGAGCCCTAGCTGTTTCGGAAGCACTCCCAAC
TAAGAGTTTTGCTCCATGCGACTGTATTCCATGTAACATATCAAA
Found at i:1522501 original size:30 final size:30
Alignment explanation
Indices: 1522466--1522525 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
1522456 ACATCAACCT
1522466 TTTACTGCTTATCTTGTCTATTTTATTACC
1 TTTACTGCTTATCTTGTCTATTTTATTACC
1522496 TTTACTGCTTATCTTGTCTATTTTATTACC
1 TTTACTGCTTATCTTGTCTATTTTATTACC
1522526 CTCAACAACT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.17, C:0.20, G:0.07, T:0.57
Consensus pattern (30 bp):
TTTACTGCTTATCTTGTCTATTTTATTACC
Left flanking sequence: Indices 1521966 -- 1522465
GCGGGATTCAATAAGTAGGATGAACCCATATCCAAAAGTAATCAATGGGATTTTCTTCTAACCTT
GCTGTGTTTACGCCCTGTGAAGCATATAAAATATATACAGGCAGTAAAAAACAAGTAGAAGAAGA
GTAGTTCAACGTTTTATTGCTACAAGAAAGTGTAACAAGGACAAGTTTCCTTTTGTATAAAAAAT
TGACAGGTGAATTTAATGCTCTAAGAAACTTTCCCCTGTGAGGTAATTGGAGGGTCGGAAGATAG
AATTTGATCCTTTATTCAAGAAGTACCCTCTCCTCTGGTAGGCAAAGAGGCATTCCAAGAACTCA
CTCCTATGGTAAAGCAAGAAAAAACCTGTTATTAGCAATGTTTGTTTAGTTTTCTCTCTGGTCTG
CTTACCTAATTTCTTTTAGAGCGCACCTACCTGTTTTTTACTTGTATAGCCATTCCAGCTATGTG
TATATCCCTTAGCTATGTGCCTATCCCTTTTTAACACATCAACCT
Right flanking sequence: Indices 1522526 -- 1523025
CTCAACAACTACTTAGTTTAGCCCTACTCACCTATTCCGACTTCTACGCGTTACGCCATTTCGTT
CAAAGAAGCCTGTCTCGGTTATCTTGACTGACCTCTGCTTCTCCTTTTATACCGCTTTACCTATT
CCTCACAAGCCTATCTAAGGCAAGGCTACCGCTCTAACACTCAGAAATCCTTTCATTCCTATCTT
CTTTACTATAAAAAGAACTCAGTGTATTTCCGAGAAAATCTTCTTGATTTTTTGTGTAGCTATAT
TCTACCTACCAACTACTACTTGCCTTGTCTCATGCTTGCTTTAAAGCCTGTCTCGCAACTCATAT
CAGCCAGCTTTTACGAGGGTAAAGAGCCCTAGCTGTTTCGGAAGCACTCCCAACTAAGAGTTTTG
CTCCATGCGACTGTATTCCATGTAACATATCAAAAGCGCAGCCTACACTGATTCTATTCCCTAAG
AATAAACTGCTCCTCTAGAAGAAGGCGCTTTATTACAAGCTATGA
Found at i:1526413 original size:25 final size:27
Alignment explanation
Indices: 1526364--1526419 Score: 89
Period size: 26 Copynumber: 2.1 Consensus size: 27
1526354 CAAGTATTTT
*
1526364 TTTTGAACGGTGCCTACTTTCCTAT-G
1 TTTTGAACGGTGCCTACTTTACTATGG
1526390 TTTTGAACGGTG-CTACTTTACTATGG
1 TTTTGAACGGTGCCTACTTTACTATGG
1526416 TTTT
1 TTTT
1526420 CTATTCTAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
25 11 0.39
26 17 0.61
ACGTcount: A:0.16, C:0.18, G:0.20, T:0.46
Consensus pattern (27 bp):
TTTTGAACGGTGCCTACTTTACTATGG
Left flanking sequence: Indices 1525864 -- 1526363
GAGTTCTGGTCAAAATAGGCATTTGGTAGTACAGCTCAAATAGCGAAAGGCAATCCATTCTAAAA
GCTCATTCTACAATGAAGTACAAAGAAGTGTAAAGATTCAACCTATGCGAGCAGATTGCAGTCTT
TGCTAGGGTAAGCCCTAAAGGGGGAGAGTTCTCCCGGCCCTTTCTTTCCGACACCGTTTTGTGCT
CGACAAAAAGCACTTACAAGCAGTGTAAAGATTTTAATATGGTGATACCCGCAAGGCTCGCAGGA
AAAAGTGGCACAGATTTGTCCTAAGTTAAGTACGTGTATAATTTATCGAAAAAGAACTAAAACGC
TAGACATTCATTACCTTGTATTCTCTCTTTAATCAAATGAAATGAGCATCTTCCTCCTTAAGAGT
TGTGACTGCATTCTTTGAGCAGCTTAGGGAGCTAGCGAGTTAATGTAAGTTTATCCCAGCCAGTG
TAAGGAAAAGAAGAATAAGTGCTGCGAGGGCGAGACAAGTATTTT
Right flanking sequence: Indices 1526420 -- 1526919
CTATTCTAATAACTACACAACGCACTGACTCTTAGAAAAGAATACTCTTTTAGATAGCACTGGCA
CTTTCCATACTTTATTACTGGCGCACTTAGACATATTACCAGTTTCTCCGCTTGATGCTTTACCT
GAATTGGCTGGTAAAGTATTGTGTGAAGTAAAAGTACATAATACATGGAATTGACAACGTTTCCA
GTAGAATGGTTTTGAAGAGCGAGAACGGCAAGCAGAGTTTTGAAGGAGCCTCTTCCTTTTTGTTT
GTGCAAATTCTTCGTCCTTTTTTATTTAGCACTTCCTGTCTGTCTTTCTGCTTGTAACTCTTCGT
TCTGTCTTTTACTCGTGGGTAACATAAAGTCTAATTCTTTTTATACAGATGGATGCATAGAACAA
GTACGAATAAGAAATCTCAGAGGTCAGAGCGGATCAAAGATCAATAAGAAAAACGAAACCTAAGG
CTAATAGACACCATAAGCAAAAGGCTAAGACAAGAAGAGGTGTTT
Found at i:1529375 original size:20 final size:20
Alignment explanation
Indices: 1529350--1529390 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
1529340 TATGCCCCAG
1529350 ATCTAGGAATTGGTGCATTT
1 ATCTAGGAATTGGTGCATTT
1529370 ATCTAGGAATTGGTGCATTT
1 ATCTAGGAATTGGTGCATTT
1529390 A
1 A
1529391 ATTGAAGAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.27, C:0.10, G:0.24, T:0.39
Consensus pattern (20 bp):
ATCTAGGAATTGGTGCATTT
Left flanking sequence: Indices 1528850 -- 1529349
TTAGAGAAATCCCTAGTATCAAAGTGAACAGAAACACAATCATGTGTGATCTATTTCGATTTGTT
TTGCTTAGTCATATATTAAAATCTATCAGAACAGTATGGAAAACTAACAGAGGTAACCTCGAGAA
ATACCAACACATACTAAAGTAATACTCACTATTATAGCTTTTTCTAACAACTTGGACAGATTGCA
TATGGGAAAGGAATCCTTGCTTTCACACTTCACAGTCAAAGCCCAACATTACCATAACAGGCTAT
TTGATATGGCATTTCTAATAACTTGTTATGTCTAGGAGCAAGCTTCAAAACGTAAACAAACTTAC
CTCACCTGCATATCTGTTAAACATCAATTTGGTAAGGAGAACAACTGAAAGAAAAAATAGGACCT
TCCTTGGAAGAATCAAAACTCTGTACAAACTCTGTTGCAGTACGGTGAATGAATGAGGTTCTATG
TTGAATGCACGCGTGTTAGATAGCCGTCTGTATTCTATGCCCCAG
Right flanking sequence: Indices 1529391 -- 1529890
ATTGAAGAATACTCGATTGAATTTGTACGCAAACCACACATGATAAGCACAATATAACCGGGGTA
ATTCGCAATCAATAACTATACGGGTAGCATAAAGAAAAGAGTACCCTGAGTGAATTAACGTTAAT
AAAGAATGCCTAGATTATACATCAACTGAAATAATTGAACCTAATAGGTTTCTCTCGTTCAGCCA
TCATTACTTGAAAACAAATAAGTAATCCACATGGTGACAATCGACAAACACAAAGCTAAACATAC
TCAAACTCAGATTGCATGCATTGCTCTCTCATGGAAGTAGAGTAGCATGTTGACAAACTAAACAA
TACCCTACCATGTTCTTTCGGGTAGCCACATTCTCAGACTGAAAGCTTACCCAAACAGTTTAGTT
TAATCTGCCCATTCAGCTTCAATAACACATTGAACTCCAAATTCAGCTTAATTACTTAATCTAAT
TTACCTATTCGCAATGGCGAGCATTTGCTTAGAATTGAAAAGGTT
Found at i:1530793 original size:41 final size:41
Alignment explanation
Indices: 1530736--1530818 Score: 166
Period size: 41 Copynumber: 2.0 Consensus size: 41
1530726 CAGGCAACAT
1530736 TACCTGCATGCACTCTTCTTCATTGTAAGAACACACTTCCC
1 TACCTGCATGCACTCTTCTTCATTGTAAGAACACACTTCCC
1530777 TACCTGCATGCACTCTTCTTCATTGTAAGAACACACTTCCC
1 TACCTGCATGCACTCTTCTTCATTGTAAGAACACACTTCCC
1530818 T
1 T
1530819 TGTTCAAACT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.24, C:0.34, G:0.10, T:0.33
Consensus pattern (41 bp):
TACCTGCATGCACTCTTCTTCATTGTAAGAACACACTTCCC
Left flanking sequence: Indices 1530236 -- 1530735
AGTATTAAAAGTGACTTATTCTACCTATGCATCGACTACTTTACGAGTTAACTTTTCCTCTTGCG
CACTGTTTCCTATCAAATTGTCTTGTTTTTCCTTTTCGATCATGCAATCTGCAATTAGTTACTAA
TACGCTTTCTTTCAAGAAAGAAGAAAAAGCAGCATTTGAGGCAAAATAACAAATCATGGAATCAA
TGTATCGAGCGAAGTTGCGCATAAAAGCACAGCTTCTACGTGAAAAAACTAATACTACCCAAATC
AATTACTTTAATATCGCAGCTGCTGTAGCTTTTTATAAGTCAGTGTGTTTTCAGGCTGGAAATCC
AAGTATATTATTCTCAGGTAGGTACACACCTTCTAAGCATTGCCGAGCAATTGCCTGCAAGAAAC
CATCAGTACGGAACATAAATACAGCAAAGCATCAAGACAGATCCATAAAATGCTTATTGTAAAAG
AACCACATGGTGAGTGACAAAGTAAAACACCCTGGCAGGCAACAT
Right flanking sequence: Indices 1530819 -- 1531318
TGTTCAAACTGAGCATTTCTGTAATTGGTATTATTTTGCTAAGCAAGAAAACTACTGAGCGTTCT
AACGCGCAACGGCTTTCGCGCAGTGCAGCCGTTGCTTGTTTGTGCTAACGCTTTCAGCAACGGCT
TTCGCGCTAGCGCTAGTGTGCTCAAGACAGAAAGTAGGAGTTTTGCATATAGGTGATTCCAACTT
TTCTCTCATTTGGTTGTGGGTTCATAATTCTTTCTTTAAGTGAGTAGGTGTCGGATTAACCAGAC
TGGTGTAATAAATAGTAATAGTTCTCTCTCGACTACCACATTTGGGCAACTAGAAAAGAGTTGGT
CATCTACGAAACAAGAGGTGTAGGGCATATGTATGGCAGGGGTCGGGGAATCTAGCCAATCATAA
GAGATGATACTTCAAACCATCTTGCGACAGATCTGGATTCCCAACGGTAACGGATTTCATAAGTG
TGTGCAAGACCTGCCTGATGAGCAGGATAATTTGTCGAGCATCCC
Found at i:1537534 original size:20 final size:20
Alignment explanation
Indices: 1537506--1537550 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
1537496 GAAAAGGGAT
*
1537506 ATAGAGAGACTGAGATATAG
1 ATAGAGAGACAGAGATATAG
* * *
1537526 ATAGGGAGACAGATATATGG
1 ATAGAGAGACAGAGATATAG
1537546 ATAGA
1 ATAGA
1537551 TAGTGAGATA
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.44, C:0.04, G:0.31, T:0.20
Consensus pattern (20 bp):
ATAGAGAGACAGAGATATAG
Left flanking sequence: Indices 1537006 -- 1537505
TCTGTGACTTCGAGACGGTTTTCTAGCCAAGGCGATTGGCGTATCGGAATCCAAGGAGAGTGAAT
TTCAATGCCACGACATAGTAGAAGGTTAAACATGGTTTATGATGGAAGACATGGAGTGAGATAGA
AAGCCTTGAACAGCATTCCATTTAGTAACTAGGAACCAAGGATGGAAGCATTGACCTATTCATTA
ACAGGCGATCTATTATCAACTACACTGCTACTAAGGAGGCAGGTGCTACCGAACGAAGCGTGCAC
ACCACCTTTATAGGCCACGAACAATTTTATAGGCACAACAGCTAGGATCCACGTCAAGGTTTTGT
TTCGACTGCATCTAGATGAATGATTTCCAGAATTCGAATCGGAAGAGAGAGCTGGTCATTCTACT
GCCACAAGGGATTTGACTGTTCCAGCCTTTGTTGCTTAGGACTCCACTTATACCGGATTCTCCCC
TAACTCCAGTCATTCACCAATTCTTCGATATGAATGAAAAGGGAT
Right flanking sequence: Indices 1537551 -- 1538050
TAGTGAGATAGAGAGATAGAGATCGATAGGTTGAAAGATAGATAGACTGGTACTCTTTAACCTTG
ATAGAGCTCGACACTTTACTATTCAAATTGGTTCTCGAGACTGGTAGTTAGATAGAAGAGATAGA
GGGCATATACTCTCAGAAACCGCCACCCCTGTTATTCTGGGAGTAGAGCACCTAATATATTACTA
CCACCTACATCCCTAACCATTATCCACCACCTAACAATCCATCTTACTATGACAAAAGTTTCGAC
TTTGCTTTTTCTTGTGTTAAACCCCTTGCCTCAGGCCAACCCAAAGACGGAAAAATCAAACACAC
ACCTACACTTTCAGTCTGCATTCCCGTATTCCCTAGTGGAGTTGAAACAAAACAAGTACGAAACT
GCCTGCGTATTAAGTAAGAAACAAGCTTTCACCCGCCCGCGTATTTGGTTCCATAGTTTGTGTTA
AAGCTGTCAACTCGGGAATTATCGTATCATAGTGGCTGCTTGCCG
Found at i:1582883 original size:15 final size:15
Alignment explanation
Indices: 1582863--1582893 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
1582853 TTTCTCATCA
1582863 ATGGTTTCAGTTTCC
1 ATGGTTTCAGTTTCC
1582878 ATGGTTTCAGTTTCC
1 ATGGTTTCAGTTTCC
1582893 A
1 A
1582894 ATCTGTTTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.16, C:0.19, G:0.19, T:0.45
Consensus pattern (15 bp):
ATGGTTTCAGTTTCC
Left flanking sequence: Indices 1582363 -- 1582862
AACATTATATCTGATAGAGATTCCATATTCACTAGCAGGTTTTGGTTAGAGAGTGGTAGGAGATT
ATCTTATTTTTATCCAGTTCCATGAACTTATCAGGGGAGACGATATCCGTGATTGTACTCTGAGG
ATTGATACCGAATCGACCTATGAGGCTATTCAGCACTACTTTCAATACAAATGAGACAAGGCGCG
CAGCGAAGAAGCTCTCACTTAGATTATGCTTTCCTAGCTATCAAACCTAGCGAACGAAAGAATTG
AGGATTTCATTTCAGTACTTGCTTAGGCCATTCACCTAGAGTTTTTTAGAAAGACTTCCCAGTGA
TACACTACCCAGCGAGTAACTACTAATGTTGCGAGCGAAAAGCCTAGCTCCGGGCATAGACTTTA
TGCTAAACCGCCGAGGGTCCCTGGAAGAAGCTTCAATGAATGGCGGAATACGATTCTCTTCCCTT
TGGAATAATAGACCACGTTCTCGTAAAGCTCTCCATTTCTCATCA
Right flanking sequence: Indices 1582894 -- 1583393
ATCTGTTTTATTGCTAATCATATGTTTGATTAACAGAATTCCATAAAAGCGTGAGAAGTTATGGG
GGTATAATTTCTTAGTCACTTGTTTACTTAAGTCAAGTCTACTAAACTGAATAACCATTTCCTTA
CTTTCTCCAAGAAGAAATAAGACTTGGTGTTACAGTGCTCACAACAAGCGCTTTGACGTTTTTAT
TGAAGTGAAAAGTTTTCCGACTTCATCTAGACTGGTTCGGTGTCATATTTACCTTTGAATTGAGG
AGTAGGCCTTAGACAGGCATTATTCGAATAGAGACCTTCAAGCACTTACTTATACCTGCTTTCAG
CGTATAAGAGATGAGATCCGGAGAGCTTTAAAGAAGAAAGACGGGCAGCGGCCATTCGTCCTTGC
TGAGACAGTAAAGTCTGCTGGCCGTGGTTAGTGGCTTGCCTACTCCGCATGCCGCGTGTACAGTT
CAATCCGTTTTTACCGGAACGAAGTGGTACCACATTGACTGTCTG
Found at i:1589772 original size:19 final size:21
Alignment explanation
Indices: 1589733--1589772 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
1589723 TACGTACGGT
*
1589733 CACTACACACTATCTATTATG
1 CACTACACACTATCTAGTATG
1589754 CACTACACACT-TCT-GTATG
1 CACTACACACTATCTAGTATG
1589773 TAAGTAATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 4 0.22
20 3 0.17
21 11 0.61
ACGTcount: A:0.30, C:0.30, G:0.07, T:0.33
Consensus pattern (21 bp):
CACTACACACTATCTAGTATG
Left flanking sequence: Indices 1589233 -- 1589732
GGGGCATTTTCCTGGGATTCTCCTCTCCCGAGTTTCCGTTTATTGATGCAATCTCACGTTTGAGA
AATATTATGAAACAGAATCTGTCGTAGGGAACAGAAAGAGCGGATGTTGTGGTTTAGGTTTAATA
TTGACTTGGGCTTCGGTGGCTTCTCTTTCTCCTACAACTGGGAGTAGCGAGTAGTTTCGTCGTCC
TTCATTCAAAGTAAACGAAGCAAAGGAAGGAGTTTTTGACTTGTGGTGCGTAGGACCGAAGTGAA
TACATGTGGAGTTAGCCAGAGTTTTCCATCAGGCTTTTCTTATTGGGTTGAAGAAAGCAGCCCTA
CCTAAGCTTTTATTCCAAAGAAGGTAGAGCTTTGTAACTGTCTCTTGCTGTTACGTACTGAGAAG
GAAGGTCAACCAACTATCTATTTAGTGCAACCGTTAAGATAGATAACCTCGCTTGAAAAAGCCAC
ATCTTCTTCGCTCGCTGCTATGAGAATAAGTCATTTACGTACGGT
Right flanking sequence: Indices 1589773 -- 1590272
TAAGTAATTTCTTTCGAGTTAGCTTCCGTTTGATTGACAGCCTACTGAATTTCAGGGAGAGTCAG
TCAGTCAGTTCGAGAGGATGAGCCTTTATTTAATATAGCCTGCAAGTGAGCCTGCCTCCCTCATT
CATGGGTAGCCCTTTTCGGATAGTAAGGTGAATCACCTACTACGCGCATTAGCTCATCTACTTGC
TAGAGGTCCAAAGCTTGCTTGATGTCCTTCCTTAATTAATATTCTTTCTTCACATAACTATATAT
AATGAGAAAAATCAAGACGAAATAATTCGACTTCGTTCGTTGCGTTGGTGTACATCAAAGGGAAG
GAATTCCTCTCATGAACAAAAGGGCCGCTCCGCTCGCTGACTTAGGGACAAAAGGGCCGCCCGCT
GACTGGTTGGCCTTGAGAAACCTGAACTTGAAAGGAGAAGCGGTAGAGCTAAACCCAGAGTTTAT
GTAATGGGTCGTGTTGTCGACTAGGTAATGAGTGAGTTTCCCACC
Found at i:1598949 original size:16 final size:16
Alignment explanation
Indices: 1598928--1598980 Score: 61
Period size: 16 Copynumber: 3.2 Consensus size: 16
1598918 CTCTGTATTC
1598928 TTCTTATCTTTTAGTA
1 TTCTTATCTTTTAGTA
* * *
1598944 TTCTTATCTTGTATTC
1 TTCTTATCTTTTAGTA
*
1598960 TTCTTCTTCTTTTAGTA
1 TTCTT-ATCTTTTAGTA
1598977 TTCT
1 TTCT
1598981 GTTCTATCAG
Statistics
Matches: 29, Mismatches: 7, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
16 18 0.62
17 11 0.38
ACGTcount: A:0.13, C:0.17, G:0.06, T:0.64
Consensus pattern (16 bp):
TTCTTATCTTTTAGTA
Left flanking sequence: Indices 1598428 -- 1598927
AATGAAATAAGAAAGGATGAGAAAGTATAAAGATATCTTACATTACGATAATATGCGTTATGTGA
AAAGATATAGTCGAGTGTGAGCACGCACTAAAGCTGACCTTGCTATAAACATCATGTGTTTCATA
AATACCTCATAACTTTCTATTCTGTCATAGGTGAAACATTCCCTGCTATCTTGTGTAGTTTGGTA
GAAAAGGTTCCAAGGGTGAGTTGTTTATTCCCGTTGAATGAGGACAAGCTTAGAACTCTTTCCCG
CCTTTTTGGATGTTAAGCACTACGTTCCATATTATTGGATTTGTAGTGAGTTCAAGTAGGGTTTG
ATGGAAGAAGGTTTACTTTTTCCTGGGATATTAAGTGGAGGGGAAATTCTAGAATACTCATCTTT
CAAATATGCTTATCGTAAAAGCTATATTCTAAGGAACTAGCTTAGGGAAAACAACAAGAGGAGCA
TTTCAATGTAAAGGCAAAGCATATATACCTCCTCCCTCTGTATTC
Right flanking sequence: Indices 1598981 -- 1599480
GTTCTATCAGACCAGTAAGATTCTCAGACTGGTTTTGATGTTGTTTATAGCAATTACATATCCTC
GAAGGCTAAGAAATACCAGCACAACCTCGAACTATAAATTAAAACACACTACTATCAAATAAGAA
TAATACACTAACCAAATACTCTGTTTATAAAAGTGAGAAGGTATACAAAGAACAAGTTCAAGACC
TATCAAGGATGAGTAAAAATAACAAAAGCTAAACATTAGAATCTAGTGAAGATACTCCAAAAACA
AGCTATTTTGGTAGTAAAGCATTAGAGAAAGATGAAATAGATGATTGAGTTAATGCAGCATTCAA
CTCACGGTATCTAGACAGAAAATCCCCTTTACCATAGCCTATGTGTTCACAGTAGGCAGTATAGT
GTTTGAAAAGTTGCTCCATGGACTCATAGAACCTCTTTTTATCAACTGACTTTAATTGCTTAGGT
AGCTTTATAAGAGCAGCCCAAGCTCTCAAAGTTTCTATTGGAATG
Found at i:1601532 original size:18 final size:17
Alignment explanation
Indices: 1601492--1601525 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
1601482 ATGCTTCTTT
*
1601492 TTCTTCTTTCCACTCAA
1 TTCTTCATTCCACTCAA
1601509 TATCTTCATTCCACTCA
1 T-TCTTCATTCCACTCA
1601526 CCTTCTTGAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 1 0.07
18 14 0.93
ACGTcount: A:0.21, C:0.35, G:0.00, T:0.44
Consensus pattern (17 bp):
TTCTTCATTCCACTCAA
Left flanking sequence: Indices 1600992 -- 1601491
CAAATTCCACAAGAGCATCTTTATTATCCAAAATAAAGGAAAGAACCTTACTATTGATCTGGAAA
CCCACATTTTGCAGTTGAGTAAGTGTGCCACTCAGACGCTCATGCGCTTTACTTGAACTAAACAC
AGCATAGTAGTGTTCAAACTCCTTTGATGATAGTAATTTGAAAGGAATACACATGTTATTGCTCC
CCGGGTTTAGGTATCCACCAACTATTTTCCCTAGATGTGCTACATTTCCGCTAGTAACCTTATTC
CATGCAACAGGAAGACAAATCATGGGCAACTTACTAGCATGAGGTAAAGATAATGTGTTGAACAT
AGGCTCCGAAAAAGTCCAGGATAGAGGAAAAACCTTATTACCACTCCTTTTGACACCATCAACCT
CGTGCTTTAATAAGCTTATATATAACTGATCGCTCAATCATGAACTCCACCAAATAGGATGCTAT
GCTGAGTCCAACCTTAGACTCGACATGCTCTTTAGATGCTTCTTT
Right flanking sequence: Indices 1601526 -- 1602025
CCTTCTTGAAGTTTTTCATAGATATTGAATACAGTTGCTTGATATTCATGAAAATCCTTATACTT
CTCCAGAATGATTCCCCGTCTACGAGGTATAACTACTTCCTTCATAAAGCAAAGATTTTTGTGAA
GTAAAGACAATAATGCAGAAGTGCGAACAAGTGAAGATTCCGATACCTCAGAGTATATCATAGAT
AGTGTCCTTAAGCAAACCATCTCTAAATCATATTGCTATAACGAATGTATAAACTGCTTATCTAC
CTCCTGAACCACTAGTTTGGAGTTAACCCTTACCTTTTCGGTAAGAATATATTCCTTAGCTGATA
CACGATCAGGATTTATAAGCAAACCCATAAGTTGAGGATACTTTTTATATGCCTCAGCTGGTTCA
GAGAAAGTGGTCAAAGACAGCATCTCGATCTTATGCTGAAGCTCTCTCATTTTACTTTCGTTACC
AACATGCTCTCTATTCATTTCTAAGTGATTATAAACCTCTTGAAG
Found at i:1621220 original size:18 final size:19
Alignment explanation
Indices: 1621193--1621265 Score: 69
Period size: 18 Copynumber: 3.7 Consensus size: 19
1621183 TCAACTTTGA
*
1621193 CTTTGCTTCATCTACCT-C
1 CTTTGGTTCATCTACCTCC
1621211 CTTTGGTTCATCTATTACCTTCC
1 CTTTGGTTCATC---TACC-TCC
* *
1621234 CTTTTGTTCATCTA-TTCC
1 CTTTGGTTCATCTACCTCC
1621252 CTTTGGTTCATCTA
1 CTTTGGTTCATCTA
1621266 GAATATGTAG
Statistics
Matches: 46, Mismatches: 4, Indels: 10
0.77 0.07 0.17
Matches are distributed among these distances:
18 27 0.59
20 2 0.04
21 4 0.09
22 1 0.02
23 12 0.26
ACGTcount: A:0.12, C:0.30, G:0.08, T:0.49
Consensus pattern (19 bp):
CTTTGGTTCATCTACCTCC
Left flanking sequence: Indices 1620693 -- 1621192
TTTCCACGTGAACAGAAACTCTCCAATAGTGGAATTGTTGTTTTTCCTACTCTTTTGCTTTGTCC
GCTTTTCATTCATTTTTATGCCTCACGAACATATATGCTTTGAACTTTGTCACTTCAGTGAACTT
CAGTTGCACACTCCTATCTATACGATCCGGTGATATAGATCCAGTATCGGCTTTAAGCTAAGCCA
TTCTCTCGCCAGAAAAGCTTGATGTTCCGAAGTGTAAGCTGCTAGATCGACATGCATTTAGCCTA
ATTCCATTTCTGTTGGCAAGGAATGAATGTTTCACACAATCATCGAAGGATACATAACATAGGCC
TATCCTCCTCTTAAGCCTTCCTTCTCTCCGCATAACGGTATAGTATGAACATGCCCCTCCTTGAA
ATAGTATGTCCCACAGTCGAGTTTAGTCAGAGTAGGGCTTTTCCTCCTGCGCGCGCTATCTATAT
GTTGACGTCCGTACGAAAGAAAGAGTGCACTTCAGTCAACTTTGA
Right flanking sequence: Indices 1621266 -- 1621765
GAATATGTAGCTTGCGAAAGCTCGGCACAGAGAATCCTAACTTCTCCTTAGTTAGAAAAGAGAAT
CCTTACTTACCCTTAGAGCACTCCTTCCTTACTTACTTATCCTTATATCACTTATCTACAATAGT
GTATTTCCTATATATATTACCGTAACGTAAATAGTCAATAGTGTAGTTATGACTTTCTTCCTTCA
GTACGTACTGTCGAGCAAGCAATAGTAAATGAATAAAAGGCCGAACGATGGTTGTCAATTCTAGG
AACGAAGGGTGTCAATTCAGGAGAGAGAGGTTCAGTTCTTTTCCTAAGCTTGGTCATGCTCTGAT
TAGATTAGTCTTTTGCCCGCCGTGAGTTCAAGTACGGTACGGCTTGGCTACTCGGTTCAAGTACG
GTACGGCTTGGCTACTCGCCTGCTTTATTGCTGTAGACTTGACTCGATCGAAAGCGTATGACACT
TCCACTTCAATACATAAATTTTTATCTCTATGATAATATGCTCCC
Found at i:1621237 original size:23 final size:23
Alignment explanation
Indices: 1621210--1621254 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
1621200 TCATCTACCT
1621210 CCTTTGGTTCATCTATTACCTTC
1 CCTTTGGTTCATCTATTACCTTC
* *
1621233 CCTTTTGTTCATCTATTCCCTT
1 CCTTTGGTTCATCTATTACCTT
1621255 TGGTTCATCT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.11, C:0.31, G:0.07, T:0.51
Consensus pattern (23 bp):
CCTTTGGTTCATCTATTACCTTC
Left flanking sequence: Indices 1620710 -- 1621209
ACTCTCCAATAGTGGAATTGTTGTTTTTCCTACTCTTTTGCTTTGTCCGCTTTTCATTCATTTTT
ATGCCTCACGAACATATATGCTTTGAACTTTGTCACTTCAGTGAACTTCAGTTGCACACTCCTAT
CTATACGATCCGGTGATATAGATCCAGTATCGGCTTTAAGCTAAGCCATTCTCTCGCCAGAAAAG
CTTGATGTTCCGAAGTGTAAGCTGCTAGATCGACATGCATTTAGCCTAATTCCATTTCTGTTGGC
AAGGAATGAATGTTTCACACAATCATCGAAGGATACATAACATAGGCCTATCCTCCTCTTAAGCC
TTCCTTCTCTCCGCATAACGGTATAGTATGAACATGCCCCTCCTTGAAATAGTATGTCCCACAGT
CGAGTTTAGTCAGAGTAGGGCTTTTCCTCCTGCGCGCGCTATCTATATGTTGACGTCCGTACGAA
AGAAAGAGTGCACTTCAGTCAACTTTGACTTTGCTTCATCTACCT
Right flanking sequence: Indices 1621255 -- 1621754
TGGTTCATCTAGAATATGTAGCTTGCGAAAGCTCGGCACAGAGAATCCTAACTTCTCCTTAGTTA
GAAAAGAGAATCCTTACTTACCCTTAGAGCACTCCTTCCTTACTTACTTATCCTTATATCACTTA
TCTACAATAGTGTATTTCCTATATATATTACCGTAACGTAAATAGTCAATAGTGTAGTTATGACT
TTCTTCCTTCAGTACGTACTGTCGAGCAAGCAATAGTAAATGAATAAAAGGCCGAACGATGGTTG
TCAATTCTAGGAACGAAGGGTGTCAATTCAGGAGAGAGAGGTTCAGTTCTTTTCCTAAGCTTGGT
CATGCTCTGATTAGATTAGTCTTTTGCCCGCCGTGAGTTCAAGTACGGTACGGCTTGGCTACTCG
GTTCAAGTACGGTACGGCTTGGCTACTCGCCTGCTTTATTGCTGTAGACTTGACTCGATCGAAAG
CGTATGACACTTCCACTTCAATACATAAATTTTTATCTCTATGAT
Found at i:1621538 original size:22 final size:21
Alignment explanation
Indices: 1621503--1621547 Score: 63
Period size: 22 Copynumber: 2.1 Consensus size: 21
1621493 ATAAAAGGCC
* *
1621503 GAACGATGGTTGTCAATTCTAG
1 GAACGAAGGGTGTCAATTC-AG
1621525 GAACGAAGGGTGTCAATTCAG
1 GAACGAAGGGTGTCAATTCAG
1621546 GA
1 GA
1621548 GAGAGAGGTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 4 0.19
22 17 0.81
ACGTcount: A:0.31, C:0.13, G:0.31, T:0.24
Consensus pattern (21 bp):
GAACGAAGGGTGTCAATTCAG
Left flanking sequence: Indices 1621003 -- 1621502
TACATAACATAGGCCTATCCTCCTCTTAAGCCTTCCTTCTCTCCGCATAACGGTATAGTATGAAC
ATGCCCCTCCTTGAAATAGTATGTCCCACAGTCGAGTTTAGTCAGAGTAGGGCTTTTCCTCCTGC
GCGCGCTATCTATATGTTGACGTCCGTACGAAAGAAAGAGTGCACTTCAGTCAACTTTGACTTTG
CTTCATCTACCTCCTTTGGTTCATCTATTACCTTCCCTTTTGTTCATCTATTCCCTTTGGTTCAT
CTAGAATATGTAGCTTGCGAAAGCTCGGCACAGAGAATCCTAACTTCTCCTTAGTTAGAAAAGAG
AATCCTTACTTACCCTTAGAGCACTCCTTCCTTACTTACTTATCCTTATATCACTTATCTACAAT
AGTGTATTTCCTATATATATTACCGTAACGTAAATAGTCAATAGTGTAGTTATGACTTTCTTCCT
TCAGTACGTACTGTCGAGCAAGCAATAGTAAATGAATAAAAGGCC
Right flanking sequence: Indices 1621548 -- 1622047
GAGAGAGGTTCAGTTCTTTTCCTAAGCTTGGTCATGCTCTGATTAGATTAGTCTTTTGCCCGCCG
TGAGTTCAAGTACGGTACGGCTTGGCTACTCGGTTCAAGTACGGTACGGCTTGGCTACTCGCCTG
CTTTATTGCTGTAGACTTGACTCGATCGAAAGCGTATGACACTTCCACTTCAATACATAAATTTT
TATCTCTATGATAATATGCTCCCATGATCTCTTCTGAAGCCTTATCTCCTTGGAATCGTATTGTA
TCAAATGCTAGACCATGCCTGGCTTTTTCGGTCAAGCAAGAGCGATAGCTGCTTCGGAGTCTTGA
ACCTTCTTTCACTTATTTCGCAGTGCATGTTTTGCAAAGCATTGGCATTCAGCGCATGTAACCTA
CTACATGGGGAAGCGTATGAAACCTACTACATGGAACCTACTCTTTGCTTACTTAGATAATATAC
TACCCGCCCTCTTTGGTGAGTTCTCTAATAGAAATAAACACTCTT
Found at i:1621658 original size:29 final size:29
Alignment explanation
Indices: 1621616--1621673 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
1621606 CCCGCCGTGA
1621616 GTTCAAGTACGGTACGGCTTGGCTACTCG
1 GTTCAAGTACGGTACGGCTTGGCTACTCG
1621645 GTTCAAGTACGGTACGGCTTGGCTACTCG
1 GTTCAAGTACGGTACGGCTTGGCTACTCG
1621674 CCTGCTTTAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.17, C:0.24, G:0.31, T:0.28
Consensus pattern (29 bp):
GTTCAAGTACGGTACGGCTTGGCTACTCG
Left flanking sequence: Indices 1621116 -- 1621615
AGGGCTTTTCCTCCTGCGCGCGCTATCTATATGTTGACGTCCGTACGAAAGAAAGAGTGCACTTC
AGTCAACTTTGACTTTGCTTCATCTACCTCCTTTGGTTCATCTATTACCTTCCCTTTTGTTCATC
TATTCCCTTTGGTTCATCTAGAATATGTAGCTTGCGAAAGCTCGGCACAGAGAATCCTAACTTCT
CCTTAGTTAGAAAAGAGAATCCTTACTTACCCTTAGAGCACTCCTTCCTTACTTACTTATCCTTA
TATCACTTATCTACAATAGTGTATTTCCTATATATATTACCGTAACGTAAATAGTCAATAGTGTA
GTTATGACTTTCTTCCTTCAGTACGTACTGTCGAGCAAGCAATAGTAAATGAATAAAAGGCCGAA
CGATGGTTGTCAATTCTAGGAACGAAGGGTGTCAATTCAGGAGAGAGAGGTTCAGTTCTTTTCCT
AAGCTTGGTCATGCTCTGATTAGATTAGTCTTTTGCCCGCCGTGA
Right flanking sequence: Indices 1621674 -- 1622173
CCTGCTTTATTGCTGTAGACTTGACTCGATCGAAAGCGTATGACACTTCCACTTCAATACATAAA
TTTTTATCTCTATGATAATATGCTCCCATGATCTCTTCTGAAGCCTTATCTCCTTGGAATCGTAT
TGTATCAAATGCTAGACCATGCCTGGCTTTTTCGGTCAAGCAAGAGCGATAGCTGCTTCGGAGTC
TTGAACCTTCTTTCACTTATTTCGCAGTGCATGTTTTGCAAAGCATTGGCATTCAGCGCATGTAA
CCTACTACATGGGGAAGCGTATGAAACCTACTACATGGAACCTACTCTTTGCTTACTTAGATAAT
ATACTACCCGCCCTCTTTGGTGAGTTCTCTAATAGAAATAAACACTCTTTCATTCAATTAAGTAC
TCCCTTTCGAGCGGATGAATGCAATTAGAAGAGGCCACATACATAATTAATATGGATATACGCTT
CCCTTTCGATATATGCTTATGGCTCTGGGTCTTTCTTTAACGGAT
Found at i:1628651 original size:13 final size:13
Alignment explanation
Indices: 1628635--1628660 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1628625 AATCAATTCT
1628635 TTTTCTTTTCACA
1 TTTTCTTTTCACA
1628648 TTTTCTTTTCACA
1 TTTTCTTTTCACA
1628661 ATGCACGTGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.23, G:0.00, T:0.62
Consensus pattern (13 bp):
TTTTCTTTTCACA
Left flanking sequence: Indices 1628135 -- 1628634
TAAAGAACTCCTTTGTACTTCTAGTAGGTCAAAAGGTTTGGTTTTTCTTTTCCTTTCTTTGGTTT
CGTTTTTTTCTCCTTGACGTCAGGGCAAGCCTATGAAAAGATTTGAAAATAGCACTTCATCGGCC
GAGAAGACTTACTTACGTATTTGAGTTCTAGCCCTAGCCCTATCCCGGAAGTGAAGGTGTGCCTT
TTACTCCAACAAAGGAATCCTCTTGCCAACAAAACCTATTTGATCTACGGGCCCTAACTGAAACT
AGGCCTAACTTATTATAGGAATGAACCGAGTCCAGAAAAAAAACACATCTTGGGTTAGGAATTCT
TGACTTTGTCTTCGGCTACTGAAAAGAGATCTCCTCTTATGTTCCTTTGTTCCCTGGGCAAAGAT
CCGTCGGAAGCGCAAACACATTTTCTTACCACGATAGATAGACAGCTATCTCGTCAAGCCTATTG
TTCCTAACCATTGGTTTGAACCTCTATTCTTTTTTAATCAATTCT
Right flanking sequence: Indices 1628661 -- 1629160
ATGCACGTGCTCAGTAATACAAGCTAACCTTATGTTAAAACATACTACAGAAATTAGTAATTCAA
CACTATCCATATATGAAGTTGGGCTCTCTAAGCGCAGTTATGCTTTGTTTCACCTTCCTCCCAGG
AGCGAGCTCATTGACACAGTACTGTATGAAGGGAATTCTTTTTTGGGCACACCAACAATGGCTAA
CTAACGAGTAATTAGAAGAAGTTTGCTTATTCTATTTTACGTTTCGTACGAGGAATTGGTTAGTC
GGTTATAGAGTTCTGCCTTGTTAATAGCAGATTAAAAGCAGGAAATAAGAATTCTACTCAGAAAG
AAGCACGGGCTATGAGATTAATTAGTTTATATCGGATTTGGAGTTAGCAAGTAAGACTGAAAGTC
ACAAATAAGCAATGTCGTTTATAAGCTATTAGGCAGGCTTGGCTCGTTTAGGGAGTTAGTAGGCT
TGCTCGCTTCGAGAGTTCCATTGATGTGGGTAATCCTCGTTACCA
Found at i:1632878 original size:15 final size:15
Alignment explanation
Indices: 1632858--1632887 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
1632848 CTCTCTTTTG
1632858 AGTAGTCTATCTAGT
1 AGTAGTCTATCTAGT
*
1632873 AGTAGTCTATTTAGT
1 AGTAGTCTATCTAGT
1632888 GAATAGATAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.27, C:0.10, G:0.20, T:0.43
Consensus pattern (15 bp):
AGTAGTCTATCTAGT
Left flanking sequence: Indices 1632358 -- 1632857
CTAGAAAATACGTAGACACATTCTACTTTTCTAGCTGGCACTTATTGTTACTACTTTGATTGGGC
CTTTTCTTGAAATTGAAATTAACTACTAAGCTTTTCCTTCCTTTAACGCATATTCGGTTTTGGTG
ATGATGGATATTGTGGTCGAATACTTTCAGTCTTCATTCCCGTATTCCCTCTACTTATCAATTGA
GCTACGTTCCTTGGGTAGAGTAACTTCCACCCTTCTTTTTCACTCCCTACTCAAAGTATTCTCTC
AGGTCTCACCTCTTCACCCTTTTTTACCACCACACCAGTACCGCCTGGTTCGTACATGCGCTCAT
CCCAACGCTCTGATTCTTCTTCCATAGTGAGGTTTGCTTCCTGTTCTTGTAGTGAATTGATGTTA
CGAATGGATAAACTAGTTGATTTTCCTCGTGTAGTGACATACCGAAAGTAATATTGCTAGCTGTA
GTAGTAAATAGCAGTAGTTCCACTCATTTCAGCAACTCTCTTTTG
Right flanking sequence: Indices 1632888 -- 1633387
GAATAGATATGTTGATATTGGAGCTAGTTGAACATTTCTATGGATATGGGATTTTCCACTATATG
GAAATATTGAATTGCTAAACTATATACAATCAGTTACTAATGCTTATAGTGGAACGATTGAATTT
ATACACCCGGAACTCCTGGAAGGATAAAAGGTAACACTTTACTTTATATCTCATTTATCTTTTTC
ACCCCCCATAACGCCAAAATAAACTGGAAAAATGTAGTTCTTCCCATCGATAGCTGTGGCAGCAG
CAACTACTCCCTTCCACTTGCCTTTCATGTGACACGCATCAAGAGCGATGTAAGGTCTACATCCC
TTGAGAAATCCGGTTACGCAAGCACCAAGAGCAACAAAAAACCGTTGACAATCTTGGTTCCCTGC
TACAAGTTCTGTTTCAAATTCCGCAATACTTTCGGGATTGATTTTCATTATCTCCCCCTTCAAAG
CTCTTATTTGGATAAAAGAATCGTTCCACTTTCCAAATCTCTCCT
Found at i:1641654 original size:21 final size:21
Alignment explanation
Indices: 1641628--1641669 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
1641618 TTTGAGGGGT
1641628 TGAGGGGTGCTCCGCGCATGG
1 TGAGGGGTGCTCCGCGCATGG
1641649 TGAGGGGTGCTCCGCGCATGG
1 TGAGGGGTGCTCCGCGCATGG
1641670 AGGAGCAGTC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.10, C:0.24, G:0.48, T:0.19
Consensus pattern (21 bp):
TGAGGGGTGCTCCGCGCATGG
Left flanking sequence: Indices 1641128 -- 1641627
TAAATGGAACTACTGAATCTATCATACTGCCTTCTTCTCAAACCACAGTGGATGTTCAGTCTTTC
CATTACCACGAGTCCATCTATAGAGTCCCCTTTCTGTATGAGTATATTTCTTTTCTTTCGCAACA
AATTGAGGATTCCTAAGCAAGAAATAGATCAGAAAAAAGGTCAACCGTTCTTCTTTAACTCGGCA
AGCAAAATGACCCCGTAACTTCGGGAGAAGGGGTGCTCTCCTATCTTCTTGATCCGTATATTTGT
TAATATTATGGTCGGTCATAGTTTAGTAAAGATTTTAAGTGGGTTTGCTTGGACTATGCTCTTTA
TGAATAATATTTTTTATTTCATAGGAGATCTTGGTCCTTTATTTATAGTTCTTGCATTAACCGGT
CTGGAATTAGGTGTAGCTATATTACAAGCTTATGTTTTTACGATCTTAATCTGTATTTACTTGAA
TGATGCTATAAATCTCCATTAAAACGTACTATCTTTTTGAGGGGT
Right flanking sequence: Indices 1641670 -- 1642169
AGGAGCAGTCTAATGCAACTTCCCCGGATGTAGACACGCCAGTGTCGAACCGGGTAAACAAAAGT
AGCGAACAGAAGGGAAACTGTGCTTACAATCAAGCGCTGGTTCGAATCCAGCTCGCTACTAAAAA
GAGGGGATACAAAATTACTTCATCATGTCTTTCTTTATTATCTGAATTTCTTAGATCTTTGTCTC
GATAGGTGCATATTCTATAGTATGACTTCTTTTCCCAATAGTGTAAAAAACTGGATGTGGTGAGT
AAGCACTCAGGTATTTTATCCTTTTCCTTATTACTTCTTCTTAAATGAATGAACTCACCAATTAA
GAAACCATAGATAGTGTGTCAGTTTTGACCAACTTCAAAAAATAAGTACTTGAAAATTTGTACTT
GAATAGCACATAGGGATAGAGAGAATAAGGCCGTCCCGTTGAGTTCGTCTATTCGCTCTTTCTTA
GACAGCTGCTTATAATAATAGGCTGGCTAGATGATGATTCGAATA
Found at i:1644805 original size:29 final size:29
Alignment explanation
Indices: 1644763--1644820 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
1644753 TGCTCCATAT
1644763 ATTTCTATTACTCATATTAGGGAAGGAGA
1 ATTTCTATTACTCATATTAGGGAAGGAGA
1644792 ATTTCTATTACTCATATTAGGGAAGGAGA
1 ATTTCTATTACTCATATTAGGGAAGGAGA
1644821 GGAGATCCTC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.34, C:0.10, G:0.21, T:0.34
Consensus pattern (29 bp):
ATTTCTATTACTCATATTAGGGAAGGAGA
Left flanking sequence: Indices 1644263 -- 1644762
TGATCATCAGCCAAGTGACTACCGTTTGGGTAGTAAAAAAGAGTCCATCTGTATCCACCAACTAT
GAATTCTGGGGACTCGATGCGCTCTCCTATATTCCGATCTACGTCGGTTGAATAGTCTTCGATGC
GAAATAGGTGGATCCCTCTCATTTCGTGGACTGGTCTGGTTGAGGTTGTTGTCCCCGTAGAGAAT
GTTCTTTTACCGAGGGGGTCCTTTTTGATTGGTGGATTTCCGAATTCGATTGACACGTATCACCC
GAAGACGTTCCGTTTTGCCAAGTCATACTTTGTTTTCCATATTTGTGGGACCGAGATGCTATTTA
CTATCGTCGACGACAGCAATATAAGCTCACGAAGGACGGTAAGAGTGCACCTTTTCTCACGCGAT
CGAGTTCAGCAAGGTACAGACCTAATCTAAGCAGGCCAAGTGAAAAGAATGGTCAACGCCTCTCC
AAAATTCGTACTATATGAACTTTTTCTTCTTTCTTTGCTCCATAT
Right flanking sequence: Indices 1644821 -- 1645320
GGAGATCCTCCTTTTTTCTTGTTAGGTCATATCTACTTCATCTTGCTCGCTTGCCCTTCAGAACC
AAGCAAGTTTGGTACGGTCACATCTACTTAAGCCTCGGCATCACTTTATTCCCGTGCGCATTAAG
CCCAAGAAGAAGTCTTCCCAGAAAATCAATCTTCGACGGGTTCAAAATGCTATAGATGGAGGTAT
GAGAGAGCTGGAAGTCCTAAATAGGATACACCTCCTCCCCTTGGCCAGTATCGGATAGAATTAGT
AATAGTGAATGGTCTCGCACTCACTGATAGTTGAAGTTGAAGAGGAAAGAATCTGCCAACCTGAG
TAAGATAGAAAGAAAGATGTTCTTCGAGGCCCAGGCTCTTTTCGGCCTAGCGAAGTCAGGTGAGG
CGAAGGAGCTTGGATTCCTGGATGCAAATCCTCCCTTTATATTCAAAAGAAAGCGGGGCCAGACC
AAAGTGCTATTGTGAAAAGAAGTTCTCCCACCATCTTCCATTTCA
Found at i:1656686 original size:27 final size:27
Alignment explanation
Indices: 1656642--1656695 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
1656632 GCAAAAGTGC
1656642 CTTCCTTATATCGATCTATGCGATCAA
1 CTTCCTTATATCGATCTATGCGATCAA
* **
1656669 CTTCCTTATTTCTTTCTATGCGATCAA
1 CTTCCTTATATCGATCTATGCGATCAA
1656696 GTAAGATAGC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.22, C:0.26, G:0.09, T:0.43
Consensus pattern (27 bp):
CTTCCTTATATCGATCTATGCGATCAA
Left flanking sequence: Indices 1656142 -- 1656641
AGGCCTAAGTAGCTGACTTTATAGGTAGCAGTGAACTCCTTGGTGAGTCGAGATTGTAATTCAAC
TAATCTCAGGTATAGTATATACTTTTAGCAAGTCTAATAACTTCTTTTCTCATAAGGTGAGGTGG
CACATATATATTGGGTGTATACTTGACTCATAAGTCTGCTTCTATTCTCCTATGATTAAACCCTA
TCGCATGTTAACCAGCCAGCCAGCAGTTCACACTTCAATATTTGTTTGCATTCCTTGCATGTCTT
GTTCAGTGCAGGCAGAGTCGTTACAGCGAAAAAAACCCTACCTACTTAGTTAGAAGCAAGCTGCA
TTCACCCAAGATTTCGTAGTTGAAAGTGGACCGACCTTAGCTAACCTCAATCCTCACCACTCGGC
GCACATCGTGGAAATAGACAAACTTACTGGCGGGCAGGCAAGCAAAACTCCTACGCTACCCCACT
TCCTATTCCTATACCTCTTGAAACACGGTGCCCAAGCAAAAGTGC
Right flanking sequence: Indices 1656696 -- 1657195
GTAAGATAGCTCTAAGCATGCAGCACAGAGTGCGGTATTTTGGAATCGGTTGAGAGAGGTAGAGA
GGTATTTCTCTAAGTATGCGCTAGGCTTAATTCACCTTGCCTTTTTCCTGTAGTAAGGAAAGAGA
GAATCCATCCCAAGAACCCTCTACACTCTGCTCCTTAGCACCTGAGATCTACACAGTACTGGCAT
CGCCTACTAATACTGTCCGCGGGTTGCTGTACCACTACCAATGCTAGGCTCTCCTGCTCGACTTT
GAAAAAAGAAATTACGACCCCCACTTTGATGTTTATGCTTCCACTATTTTGGACTATTTAGTGCA
ATGTTCTTTTTTTCCTCAGTGGGGCTCGCTAGCCTAAGTAAGTTTGTGTTTACGACCGATTCTAC
GAAGAGAGTAAAGCTTTCCCGGAGATCTCTTCTATTTGAGTAGCGAAACAATGACAAGAGCTTTT
TCCCTCCGAATCCAAGTACTGCCAGGGAGTCCCATTGAAACGCGG
Done.