123.fas.2.7.7.80.10.50.500.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NC_068217
Parameters: 2 7 7 80 10 50 500
Length:  1678054

Tables:   1   2   

This is table  1  of  2  ( 161 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
310--353	22	2.0	22	86	0	61	54	13	13	18	1.71
6822--6854	16	2.1	16	100	0	66	12	12	24	51	1.73
21891--21953	20	3.2	20	65	13	58	22	14	17	46	1.84
35598--35660	22	2.7	22	82	9	72	44	12	17	25	1.84
35999--36065	28	2.4	28	94	0	116	37	13	17	31	1.89
36292--36350	27	2.2	27	96	0	109	18	27	10	44	1.82
36669--36714	24	1.9	24	82	8	58	10	32	6	50	1.63
40945--40972	14	2.0	14	100	0	56	28	21	0	50	1.49
62652--62694	21	2.1	20	82	4	50	34	2	51	11	1.51
63258--63300	22	2.0	22	95	0	77	30	16	18	34	1.93
70103--70155	24	2.2	25	86	3	72	45	5	35	13	1.67
72801--72860	21	2.9	21	97	0	111	23	25	18	33	1.97
76236--76275	20	2.0	20	100	0	80	5	35	0	60	1.19
83653--83701	24	2.0	24	100	0	98	42	12	12	32	1.79
83655--83707	24	2.2	24	93	3	88	47	11	9	32	1.71
93665--93708	22	2.0	22	95	0	79	31	11	31	25	1.91
104013--104050	13	2.8	14	88	4	51	52	0	42	5	1.24
111412--111439	13	2.2	13	100	0	56	28	14	0	57	1.38
116966--117013	24	2.0	24	88	8	71	20	22	14	41	1.89
151462--151505	22	2.0	22	86	0	61	54	13	13	18	1.71
157974--158006	16	2.1	16	100	0	66	12	12	24	51	1.73
174390--174424	16	2.2	16	94	0	61	34	14	31	20	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
179058--179101	13	3.6	12	90	6	63	20	38	9	31	1.84
179064--179102	13	3.0	13	92	0	69	17	38	12	30	1.88
180140--180171	12	2.7	12	90	0	55	50	9	40	0	1.35
188136--188177	21	2.0	21	90	0	66	30	4	33	30	1.78
221865--221908	23	1.9	23	100	0	88	25	22	43	9	1.82
231208--231232	13	1.9	13	100	0	50	8	28	24	40	1.83
238189--238244	18	3.1	18	86	2	76	25	19	14	41	1.89
238196--238247	18	2.9	18	91	0	77	23	23	13	40	1.89
246438--246480	21	2.0	21	86	0	59	37	18	9	34	1.83
294077--294135	30	1.9	31	93	3	102	33	10	18	37	1.85
308394--308438	19	2.4	19	92	0	72	35	11	31	22	1.89
319128--319194	32	2.1	32	100	0	134	34	28	14	22	1.94
326828--326863	18	2.0	18	88	0	54	25	30	13	30	1.94
336295--336319	12	2.1	12	100	0	50	20	24	48	8	1.76
350075--350131	30	1.9	30	88	0	87	35	22	22	19	1.96
356141--356171	16	1.9	16	93	0	53	29	16	29	25	1.96
366768--367109	74	4.6	74	100	0	684	15	31	23	30	1.95
371009--371216	72	2.9	71	80	8	242	29	13	20	36	1.91
380464--380524	25	2.4	25	88	0	104	26	26	16	31	1.96
381655--381690	18	2.0	18	100	0	72	22	16	11	50	1.77
384201--384235	17	2.1	17	100	0	70	37	22	11	28	1.89
387494--387532	19	2.1	19	100	0	78	35	25	23	15	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
387537--387572	12	2.9	12	87	4	54	58	16	8	16	1.61
392135--392210	28	2.7	28	87	4	100	21	31	14	32	1.93
392157--392212	28	2.0	28	100	0	112	21	32	14	32	1.93
392797--392831	16	2.1	17	89	5	54	25	8	28	37	1.85
418731--418775	22	2.0	22	83	8	56	26	15	28	28	1.96
429687--429723	18	2.1	18	100	0	74	21	27	16	35	1.94
450274--450322	23	2.1	23	100	0	98	24	24	10	40	1.86
456738--456807	32	2.2	31	89	2	104	40	14	15	30	1.87
456854--456879	11	2.4	11	100	0	52	15	26	0	57	1.38
496356--496416	29	2.1	29	84	6	79	26	16	14	42	1.87
496488--496524	19	1.9	19	94	0	65	40	18	18	21	1.91
496637--496684	25	1.9	25	95	0	87	25	6	20	47	1.73
500738--500778	17	2.4	17	83	0	55	39	2	36	21	1.67
539810--539843	16	2.1	16	100	0	68	44	11	17	26	1.83
539989--540030	20	2.0	21	90	4	68	26	7	40	26	1.81
542833--542889	26	2.2	26	93	6	98	26	28	14	31	1.94
579982--580021	20	2.0	20	100	0	80	30	0	15	55	1.41
605216--605246	16	1.9	16	93	0	53	22	9	25	41	1.84
606858--606914	28	2.2	26	84	9	71	42	14	17	26	1.87
627166--627190	13	1.9	13	100	0	50	8	28	24	40	1.83
636464--636492	12	2.3	13	94	5	51	44	6	27	20	1.77
644706--644742	13	2.8	13	100	0	74	24	13	32	29	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
646040--646065	13	2.0	13	100	0	52	0	15	0	84	0.62
657311--657387	36	2.1	36	97	0	145	37	23	10	28	1.88
662287--662314	14	2.0	14	100	0	56	42	14	7	35	1.73
669997--670106	34	3.2	34	100	0	220	44	14	27	13	1.83
688592--688636	12	3.8	12	94	5	74	15	37	4	42	1.67
701983--702021	20	2.0	20	94	0	69	38	12	28	20	1.89
712175--712223	24	2.0	24	96	0	89	2	24	10	63	1.37
740103--740156	27	2.0	27	100	0	108	7	29	7	55	1.55
740463--740517	18	3.1	18	79	10	76	27	20	16	36	1.93
766024--766062	19	2.1	19	90	0	60	43	20	15	20	1.88
766123--766189	31	2.2	31	100	0	134	37	14	17	29	1.91
766244--766309	26	2.5	26	100	0	132	27	4	39	28	1.76
768193--768227	17	2.1	17	100	0	70	28	5	31	34	1.81
771113--771153	20	2.0	20	90	0	64	21	12	24	41	1.87
780759--780807	24	2.0	24	100	0	98	26	16	20	36	1.93
818886--818926	20	2.0	20	90	0	64	9	31	12	46	1.74
823517--823555	15	2.4	16	83	12	53	38	20	12	28	1.89
853337--853417	42	1.9	42	85	9	112	45	8	12	33	1.72
854124--854154	15	2.0	16	93	6	55	32	6	41	19	1.77
884843--884888	22	2.1	22	91	0	74	41	10	23	23	1.86
922739--922801	29	2.2	29	100	0	126	44	6	23	25	1.77
925699--925740	18	2.2	19	83	8	50	21	19	9	50	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
932291--932320	15	2.0	15	100	0	60	20	13	20	46	1.83
961241--961270	15	2.0	15	100	0	60	33	20	26	20	1.97
961323--961395	25	2.9	26	80	8	80	32	8	20	38	1.82
961408--961441	17	2.0	17	94	0	59	14	23	11	50	1.76
962257--962290	17	2.0	17	94	0	59	14	26	23	35	1.94
971504--971542	13	3.1	13	85	3	53	69	17	12	0	1.19
977079--977103	6	4.2	6	100	0	50	48	0	16	36	1.46
977445--977485	19	2.2	19	86	0	55	21	9	21	46	1.80
989828--989865	18	2.1	18	90	0	58	23	26	13	36	1.91
992010--992039	15	2.0	15	93	0	51	40	6	10	43	1.64
1021048--1021109	31	2.0	31	100	0	124	38	9	29	22	1.86
1031779--1031832	28	1.9	28	100	0	108	37	14	27	20	1.92
1042348--1042388	21	2.0	21	90	0	64	56	4	29	9	1.53
1042990--1043058	34	2.0	34	91	0	111	47	10	34	7	1.65
1048233--1048307	35	2.2	35	83	11	93	14	13	14	57	1.66
1050898--1050932	18	1.9	18	100	0	70	40	14	28	17	1.88
1055860--1055903	12	3.7	12	84	0	61	43	34	4	18	1.70
1058533--1058603	18	3.6	18	71	17	61	0	38	14	47	1.44
1058689--1058727	10	3.9	10	93	0	60	10	43	10	35	1.73
1070412--1070443	16	2.0	16	100	0	64	18	18	18	43	1.88
1093394--1093438	22	2.0	22	83	8	56	26	15	28	28	1.96
1100558--1100584	13	2.1	13	100	0	54	29	11	29	29	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1123781--1123821	21	2.0	21	90	0	64	4	43	2	48	1.37
1188114--1188147	17	2.0	17	100	0	68	35	35	17	11	1.87
1190663--1190705	21	2.1	20	95	4	77	13	13	16	55	1.69
1200570--1200625	28	2.0	28	100	0	112	21	32	10	35	1.88
1214302--1214353	25	2.1	25	100	0	104	40	17	15	26	1.89
1249483--1249542	27	2.1	28	93	6	104	26	15	10	48	1.76
1249491--1249545	27	2.0	27	100	0	110	29	14	10	45	1.79
1249584--1249623	13	3.1	13	96	0	71	35	7	30	27	1.84
1274111--1274153	22	1.9	23	90	4	70	25	20	16	37	1.93
1280897--1280950	26	2.1	26	100	0	108	31	7	25	35	1.84

Tables:   1   2