123.fas.2.7.7.80.10.50.500.txt.html

Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NC_068216

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500

Length: 2064773
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29


File 1 of 2

Found at i:8633 original size:20 final size:21

Alignment explanation


    Indices: 8594--8635  Score: 59
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       8584 TGTGACTTGG

                    **           
       8594 CTTAAGAAGTAAAAGACCTTT
          1 CTTAAGAAAAAAAAGACCTTT

                                 
       8615 CTTAAGAAAAAAAAG-CCTTT
          1 CTTAAGAAAAAAAAGACCTTT

             
       8635 C
          1 C

       8636 CAACGTGATT


Statistics
Matches: 19,  Mismatches: 2, Indels: 1
        0.86            0.09        0.05

Matches are distributed among these distances:
  20    6  0.32
  21   13  0.68

ACGTcount: A:0.45, C:0.17, G:0.12, T:0.26


Consensus pattern (21 bp):   
CTTAAGAAAAAAAAGACCTTT

Left flanking sequence: Indices 8094 -- 8593
TAGTGCTCAATCTGTTACTTCCGATACAGAAGCTTACCTACCAGTATTTGCTTACCTAGCAGATG
CTTTTTCCGAAGTTTCCAGTTCATATTCACCTAGGCCAGCCTGTCTTCCAGGTTACCCAAGCCAG
CTAGTAGCCCGTGCACACCGCTCAATCTTTTCCCGCTTTTACCGTGTCAAGCTATTATCTAAAAG
CTTATTCTTTTGAAACCGCGCATACTTGCCTTAAACACCTATCCTAATTTATAGCCTATACCTGA
ATACCTTGCTTCTGCTTCAACTAAACCAGTTACTGAATCGTTACCAGTGACTGTATCCTCTCTTT
TTCAATGTTTAACACAGAAGAAACCTGTTCAGCTACTAAAAGCTTATCTTTCCCTATTAATCCAA
ACAAACCCTATCTGTTTCAGCCTATTTTGCTTTTTTTTATGCATCTATTGCCTATTAGACTTTCC
CTGGGAATTAGAAAACTAGCCTAGCTTAGACAACCTGTGACTTGG


Right flanking sequence: Indices 8636 -- 9135
CAACGTGATTTCTTCTGTTAAATAAGTCAATCTTAGGTTGAACTTGGAATTTCTTTTTCCACTAG
GCCCAGCAGCTGTGGCCGTGATACCTGTTGGATGGGAATTCTTCCCTTTTCCTATCAACTTTACT
GTAGTAACATGATCCTCATAGAGAACTGCTTCGATTGCATTGACCACAATCTACTACTTGTTTTT
TTTAGTCAGAAGTTGGGTTTCGAGAACACTGGTTTCGTTGATCGCCTTTTGGTCAACCCTTGACC
AGTTCCAGTTATGGTTGAGGTAGCTCAGCTACTTCTCTTCTTACTTTTTGGTCTTATCTCTCGCT
CAGATACTATATTATATCTAATGAAAGGCTCAAATCCATGCCGTTCAAAGCCAGTGAATGTTCCG
CTCGCTCCTTCCTTTCCGGATCGCTGCTGCTATTGATCAAATAACTTGCTTGGTGGGTTGTTTGC
ACTGCTTTTGCAATGGGGGATTGAAGGATAAGAGAAAGTACCATG



Found at i:28015 original size:20 final size:20

Alignment explanation


    Indices: 27990--28029  Score: 80
    Period size: 20  Copynumber: 2.0  Consensus size: 20

      27980 CTTTCTTATA

                                
      27990 AAATAATATATTTATATAGT
          1 AAATAATATATTTATATAGT

                                
      28010 AAATAATATATTTATATAGT
          1 AAATAATATATTTATATAGT

      28030 CAGAGGAAAG


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  20   20  1.00

ACGTcount: A:0.50, C:0.00, G:0.05, T:0.45


Consensus pattern (20 bp):   
AAATAATATATTTATATAGT

Left flanking sequence: Indices 27490 -- 27989
AAGCTCTCGAACCTATTCCTAAGTAAGTTTAGGATTAGGTTTCCGATCCGGTTGGTGTTCCGACA
TCCCGAATCGAGGTGGCTCTAAACTAAGGGTTGCCTACCTCTCTAGTTACAGAGAGAGGAGAGGG
GCCTCGTCGTCGTCCATTACCTAACCACTGTATTCGGATCATAAAGTAAGATTTATCCCTATCTT
TTAAAGAATAAGCTCCTTCACCCGCTGTCTCTAAATGCCCCCTCAACCAACCTCTGGGACTGAAT
GAAATCCTGAATTCGAAAAGAGTCAAATCCACTAAACCCCCTCTTCCGAAGGACTGAAGAAATAC
GTACAAATAATTTAGTTAGAGAGGGGAAAAGCATATGATCAAGCACCCAGAGAAGTTAAATAAGC
ACCAGGAAGAACTTGCGGTTGTCCTTACTCTTTGCTCTTCATAATATGATGCCTATGGTGGATGT
TCTCTTTTTTGGGATGAAGATGAAGTTTCTATCTACTTTCTTATA


Right flanking sequence: Indices 28030 -- 28529
CAGAGGAAAGGGAAAGGGTCTTTTTTCATAGTAAGCAAGAGCTGCTAGCACGGGATATGCATCTG
CTTGTTTGGGTAGGCCCAGGAAGAGAGCCAACAAGATAAGCTGCTTTTTAGGTTCAATTGAATAA
ACTCGTAAATAGTGGAATTGACGTATTTGTGTTGAATCTGCTTTCTTTCGTAGTATTTATTCCTG
GCTCAACCTCTCTTTATTAATAGACCAAGCTCCGCAAATACACATTGGAACATCCATCAGCCCAG
GACAGATATACTTCTTGAAACTTGGGATGCCTATTGTAAAGAATGCCCATACAGAAAAAATGTTG
CCCTAGAGTTTCTGCCCCGTTTTTTTTTAGTATTGTTTACATGGGGCTTGACATACCCGACCCGA
AATGGGTAGCTTTCAACGATACCCTAACCCTAAGTCAGGTGTACCAATTCACTAAGCTTAATACA
CACCCAATGAAGAACTCAGATTTATTTTTATTTCGTAGTTTATGT



Found at i:39514 original size:16 final size:16

Alignment explanation


    Indices: 39490--39520  Score: 53
    Period size: 16  Copynumber: 1.9  Consensus size: 16

      39480 AAACTAGACA

                            
      39490 TCAGACTATCAGGCAT
          1 TCAGACTATCAGGCAT

                *          
      39506 TCAGGCTATCAGGCA
          1 TCAGACTATCAGGCA

      39521 AGCAGTCAAG


Statistics
Matches: 14,  Mismatches: 1, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  16   14  1.00

ACGTcount: A:0.29, C:0.26, G:0.23, T:0.23


Consensus pattern (16 bp):   
TCAGACTATCAGGCAT

Left flanking sequence: Indices 38990 -- 39489
CGTGCGAGATAGGAGTGGTGGGTACGATCTCAATCGAAGGAAAATAGGTGTAGGTTGCGCTTTCG
CAATAGTGTAGTACTTGAGGCAGAATCCACCACCTAAGAATTAGGCATGATTGATACAAAGCTTA
TCTTTATGTAGACGGATAAGCGAGTCTCCAACCTTAGCTAGTTGTACAAGGCACACTGCCAAGGC
GTATGTATTAGCCAGACCTCTAAATTAATTACCATGATTCCCCATCAAAGAAATCCGTACCTTCT
CTTCCTAAAATCTCAACCAAAGCAAGTGGTGAACTTCCACAATGGTCGGCACTATCTACTCTTTT
CCCTCTATTGACTAGAGTCAAGAATTAATCCACATCTGCTGAGCCCTATTCTCTGGTATCTGCTG
ACCCTTCGTTTGTTGAATGAATTATACTTAGCGTACCACCATGGCATGGCTAATAACCATTGTCT
ATCTCTACCCACTTGAAAAAACTACTTGCTTTTTGAAACTAGACA


Right flanking sequence: Indices 39521 -- 40020
AGCAGTCAAGTAGGAGGGTGCCCATGAAGAGGTTGTCTTACACCGCACAGGTGCTGCATCATTAC
CAATATGGCAACGATGGCGGATGTTATCTTAATTAGAGGTTCACTTTCCTTGGTGGGGGTCTTTT
GCATGATAGATCAGGTGCCTATTGATACACCGAAAGAGACTAACGCTATGCTCCACTTTCTTACT
TTTATTCCTCAGCTCGCTTCAAAAAACTACATATTTTTGTGAGATATGGACCTGGGGTTCTCGTT
TCTGCGCAAGCTATTTAAAAACCTGCCTGCCTTCGGGGAGATGGGTTGGGTCATACGCGGGACCT
ACCCCGAGGAAGGAGGCTTGAGGCGCGCTAAATCAAATTGTTTTATCAACACGGGGTGGAGAAGG
CATTGCAATTTCCTGCTTTTATGATTGCTTCGATTCCTCTGATTCTTCTTCTGAGAGGAATTACC
AATCCTTTATTTTATTGGCTATGTCATCCTCTTTTTAGTAGATGT



Found at i:40627 original size:18 final size:18

Alignment explanation


    Indices: 40600--40635  Score: 63
    Period size: 18  Copynumber: 2.0  Consensus size: 18

      40590 AGTAGTGTTC

                              
      40600 GAGATAACAAGGCTAGAA
          1 GAGATAACAAGGCTAGAA

                 *            
      40618 GAGATCACAAGGCTAGAA
          1 GAGATAACAAGGCTAGAA

      40636 TGTCTTGTGT


Statistics
Matches: 17,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  18   17  1.00

ACGTcount: A:0.47, C:0.14, G:0.28, T:0.11


Consensus pattern (18 bp):   
GAGATAACAAGGCTAGAA

Left flanking sequence: Indices 40100 -- 40599
TCTTATGGCTATTGGCTTTCCAGTTTTCGACTCTCTGCTGCTTCTGGAGCTGCTTAAGCGCTTAA
CTTCTACCAAAGTTGGTATACATTGGATGGAATTAGAGTGGGCGTGGCTACCTACATCGGGCAAG
AATAGGAGTCGTATTTTGTTTTGTACTACCGAATAAGATAGCGAGAAATCAGATCAAGAATGGAA
CCAGTGGACCCTCCGACAGTACGAGCCCTTGTTCGCTTGGTTGCTCAACCCCTATCTCCCAGGCT
ACGACCTAGCGCATTGCCTTCGATGAGTCTATATCGGATGGGTGTTCAAGTCTTTTTAAAAACCA
GCCCATTCTAGTCTATCTGTCCTACTGCCTTTAGCTTCTTAATTGGAAGTGCAAGGTGGACCCAG
TGGGGGTGATTCCTTACAGCATGCTAGAGAAAAGAAGTTGACTGCTATACAGTTACCGATTCTGA
TTACTGTACTTTGGATTTCTTATTATCATAACATAAGTAGTGTTC


Right flanking sequence: Indices 40636 -- 41135
TGTCTTGTGTGCGAAATAGTGCCATTGGTTAGTGAAGTTAGCTGACAATCGTCATATCATATCCA
TAGTCTAAGGACTATAAAGAAGATAGTGAACCTGAGGTTGTGCTGTCTCCAATCCCACGAGTCCA
ATAGGAAGAGCTAGTCCTCTAAAGTAAAGTAGGCGAATTCTGGCTAAATAAAAGAAAAGAATTCT
TACTTTCACGGCCATCAAACATTCCAAGACATCTCTTCAAGACTATCCGACTCAGCTCTGCGTAG
GCAGAGCCAGGAACTAGATCCGTATCCCATGATCAGTAATCTTACAATTACACAACCACCAGATC
CTTTAGGTTTGTTCGATCTATCGATAACTGATAGACAGACGCCTTTGACACTTCCTCCAGGTGGA
GTTGATTAACACTCTCATGGTTGGCCGAGTACATACCATAGCGTATATCAAGTATCCAACCGCTG
ACGAATAAGGAAAGGAAGCCGCCTTAGTAAAACTAGATCTTGCTG



Found at i:60888 original size:31 final size:31

Alignment explanation


    Indices: 60850--60911  Score: 106
    Period size: 31  Copynumber: 2.0  Consensus size: 31

      60840 TTGTTAGAAA

                       *                   
      60850 CCCCGTAAAGCGGATAACTCTGTGCTCATTC
          1 CCCCGTAAAGCAGATAACTCTGTGCTCATTC

                                    *      
      60881 CCCCGTAAAGCAGATAACTCTGTGTTCATTC
          1 CCCCGTAAAGCAGATAACTCTGTGCTCATTC

      60912 TGAGCACAGC


Statistics
Matches: 29,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  31   29  1.00

ACGTcount: A:0.24, C:0.31, G:0.18, T:0.27


Consensus pattern (31 bp):   
CCCCGTAAAGCAGATAACTCTGTGCTCATTC

Left flanking sequence: Indices 60350 -- 60849
TTAGCAGACATCGTATATCTGCGCTTTAGTTTAGTTCATAGGACCACTCATTTTGGAGATAGCAG
GCAGTGAAAGAGGAGAAGCAAACAGCACAGCCTTTACCTACCCGGCACACTCAGTTAACACCTTC
TCAAGATGTACAGACCAGTCCAATCCCCCTTCTTTGAAGAACTTCTAGAATTAGTGCATTTCTTT
TCCAACCAGCAATACTTGGCAGAATCTCACTCCCCCCCCACGTTGCAGACTCCTGGGAACCTGTA
AAGTATGTGAGTTTGTAAAGTGAATGTAAATTAGAGTGTCAAATGTAAGTAGTCTAAAGGATGCA
GTCAGTATGTTGAATTCCTAATTCGTTTTTAAATAGAAGTGTAAATATGTCTGGTTCCCTACGTA
TCAAAAGTAAATTCTCCGTCCTCTTTTTTTAGTAAACCTCGGTAAAAACGTCCTACTCATGGATT
TCCTTCATACGACTTTATTGACGGCTTTCTTCCTTTTGTTAGAAA


Right flanking sequence: Indices 60912 -- 61411
TGAGCACAGCCTATTTTTTTTTTTTTATTTACAGCTTCTTTTCTAACTATTGATAATATAGTTGA
ATATAGGGAAATCCTACTTGTATTTGTAGCTTTACACGTATAATGTTCCGTCTTTCACTCTATAC
ATTAGGAGTTGATCGTCTTTTTCACTACTATACGGCATGTTGCGAGCGAAAGGAGTTTTACACGT
ACGTAGGCATGTTACGAAAAAAAAAAAGTATAAAGAGCTTTTATATCATAAATTTCCCTATAATA
GGCAGGTCGCTATCTTGATCTTGAACCAAGTTGCAGACAGATTCGAATCTGACTCCACAATCAGG
TTACATATTCCTTTGTCAAGCGCCAATGGAAGACCTTGCCTAAAAGCTTTACCCAGCAGCACCAT
AAATATCTTCTCTACTATATTGCTTTGCGTTCATCTTATTCGAATGCGCTACTATTCCTCAAAAG
TCTATCGAGAAAAGGTTGACTTTCCAGGCATATGCTAACGCCCTT



Found at i:61539 original size:21 final size:21

Alignment explanation


    Indices: 61515--61557  Score: 59
    Period size: 21  Copynumber: 2.0  Consensus size: 21

      61505 TCACTTCGAC

                 *               
      61515 TATGCTTTTTTACTTTACTTA
          1 TATGCGTTTTTACTTTACTTA

                       *    *    
      61536 TATGCGTTTTTCCTTTTCTTA
          1 TATGCGTTTTTACTTTACTTA

             
      61557 T
          1 T

      61558 TGGTATACTG


Statistics
Matches: 19,  Mismatches: 3, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  21   19  1.00

ACGTcount: A:0.14, C:0.16, G:0.07, T:0.63


Consensus pattern (21 bp):   
TATGCGTTTTTACTTTACTTA

Left flanking sequence: Indices 61015 -- 61514
TATAATGTTCCGTCTTTCACTCTATACATTAGGAGTTGATCGTCTTTTTCACTACTATACGGCAT
GTTGCGAGCGAAAGGAGTTTTACACGTACGTAGGCATGTTACGAAAAAAAAAAAGTATAAAGAGC
TTTTATATCATAAATTTCCCTATAATAGGCAGGTCGCTATCTTGATCTTGAACCAAGTTGCAGAC
AGATTCGAATCTGACTCCACAATCAGGTTACATATTCCTTTGTCAAGCGCCAATGGAAGACCTTG
CCTAAAAGCTTTACCCAGCAGCACCATAAATATCTTCTCTACTATATTGCTTTGCGTTCATCTTA
TTCGAATGCGCTACTATTCCTCAAAAGTCTATCGAGAAAAGGTTGACTTTCCAGGCATATGCTAA
CGCCCTTGTTGCTTAGTAGCATACGACTACTTATTCCAATAAAAATCACTCCATACGCATAAGGC
ACTACGCCTACGAAAACGGAAACATATGCCTACGATCACTTCGAC


Right flanking sequence: Indices 61558 -- 62057
TGGTATACTGAGTAAAGAGGTTATGCTCCGCTTTCTCTTCGCTTTCACAACCCAGAAGCTATTGC
TTGTCTGAGCTCTTATCTGATTGGACTTAGTAAATAAAGTATAGACTCTTAAGCAATTAGGGCTT
TTTCTTTTTGCTTATCCTCTTGTACTTACAAGACAAACTGCCATTTAACTGATCTTTTCGAATGA
GGAACAACATCCTTTTCTGATTAGTACTTTTATGCCGAAGCATTCTCCCCTTTCTTTGGATAACA
TCTTGTCGCCGTATTCCATTTTTTATAAGAAAGTAAGCGTAGTAAGGAAAAAGTAACCGTAGCAA
GGTAAAGGGATAAGCCTGTCCTACCAGCCTCAGCACGCCTGAGTGTTCTAGGTAATAAGGAATAT
TATACGTTTCTACAAGTCGGTTATCCGAGTTTGCCTTCTCTTATGATGCGGTTAACCCTACTATG
AGCTCTATGTCGTACAAGGCTGGGGGTGAAAAGTAGAATAAGATT



Found at i:61872 original size:20 final size:20

Alignment explanation


    Indices: 61847--61884  Score: 58
    Period size: 20  Copynumber: 1.9  Consensus size: 20

      61837 TTTTTATAAG

                   *     *      
      61847 AAAGTAAGCGTAGTAAGGAA
          1 AAAGTAACCGTAGCAAGGAA

                              
      61867 AAAGTAACCGTAGCAAGG
          1 AAAGTAACCGTAGCAAGG

      61885 TAAAGGGATA


Statistics
Matches: 16,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  20   16  1.00

ACGTcount: A:0.47, C:0.11, G:0.29, T:0.13


Consensus pattern (20 bp):   
AAAGTAACCGTAGCAAGGAA

Left flanking sequence: Indices 61347 -- 61846
GCGCTACTATTCCTCAAAAGTCTATCGAGAAAAGGTTGACTTTCCAGGCATATGCTAACGCCCTT
GTTGCTTAGTAGCATACGACTACTTATTCCAATAAAAATCACTCCATACGCATAAGGCACTACGC
CTACGAAAACGGAAACATATGCCTACGATCACTTCGACTATGCTTTTTTACTTTACTTATATGCG
TTTTTCCTTTTCTTATTGGTATACTGAGTAAAGAGGTTATGCTCCGCTTTCTCTTCGCTTTCACA
ACCCAGAAGCTATTGCTTGTCTGAGCTCTTATCTGATTGGACTTAGTAAATAAAGTATAGACTCT
TAAGCAATTAGGGCTTTTTCTTTTTGCTTATCCTCTTGTACTTACAAGACAAACTGCCATTTAAC
TGATCTTTTCGAATGAGGAACAACATCCTTTTCTGATTAGTACTTTTATGCCGAAGCATTCTCCC
CTTTCTTTGGATAACATCTTGTCGCCGTATTCCATTTTTTATAAG


Right flanking sequence: Indices 61885 -- 62384
TAAAGGGATAAGCCTGTCCTACCAGCCTCAGCACGCCTGAGTGTTCTAGGTAATAAGGAATATTA
TACGTTTCTACAAGTCGGTTATCCGAGTTTGCCTTCTCTTATGATGCGGTTAACCCTACTATGAG
CTCTATGTCGTACAAGGCTGGGGGTGAAAAGTAGAATAAGATTGCAATTCCTAAGTAGGTAGTGC
AAGATGTCAAAGACTCAGTCGGCTGTTCGGCAGGCAGGTTTGAATGCAAAAGATACGGCTACGTG
TTCGACAACTGGATATGTACTTTGCAACTAGAAAAACATGACCAACTTATACAACTCGACATCAT
GGAAATGCACCTGGGAAAGACGGTATCTCCATTCCATTCTCCCACCCACTACAACATCTAAAATA
TAGGGTAATCATCTAGAATCAAGCATTGACTTTCTATTGACTTAAGTCGCGCTATGCTAAGTAGA
CTACTGAATTATTGGAATTGATTGACTTGCCACTAACATACATAC



Found at i:72292 original size:17 final size:17

Alignment explanation


    Indices: 72270--72302  Score: 66
    Period size: 17  Copynumber: 1.9  Consensus size: 17

      72260 TTATACTAGC

                             
      72270 AGCTATGCTACATCAAA
          1 AGCTATGCTACATCAAA

                            
      72287 AGCTATGCTACATCAA
          1 AGCTATGCTACATCAA

      72303 TAGATAGGGG


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  17   16  1.00

ACGTcount: A:0.39, C:0.24, G:0.12, T:0.24


Consensus pattern (17 bp):   
AGCTATGCTACATCAAA

Left flanking sequence: Indices 71770 -- 72269
TACTCGCTAGAGCAGTATCCGTTTTAGTAACAGTAAGACTTGCTTTAGCTTTAGCTCTGTCTTTA
ATAACTGCATTAGGAATCCCTCTTTCTAGAAGTAGTAGCTAGCTATTGTAGCTGTTTGTTTTTCT
TCCTGCTAGAACTTTCTCAGTAGTTGCTGTATCAGTAGTTGTACTAGCTGTGACAGTAATATTAG
TAACTGAAAAAAAAAAGAAGGTACTTGAATTAAGTAAAAAAGGTAACCCCATTAAGTACCCCTCC
GTATACGTATAAGCTGTTGCTTTAGTAGCTCCTTGAGTATACGCAGTTGCTGGACGACTAGTGGT
TCTAGACTAAGAGACGCGTCCACGCCCTCATCACCGATTGCTACTTCGGGCAGACAATGCAGTTT
GGAATTCTTATTATTCCATTTCATATTCGAATATGATAACAAGTGCTGACCTATTCTCGTAGTGA
TGATGCAAGCACATCAAAAAAGGTTCCTCTTTTCTTTATACTAGC


Right flanking sequence: Indices 72303 -- 72802
TAGATAGGGGTATTCTTATATAAGAATATATTAACTAAACATGCCAATAAAGATATGCTAGCGGT
GGACGACAGTGGAATGAGAGTTCAAATCCCGAGCATTGAGTAGTGGGATTCGCCTCTTAAGAAAT
AGAATTTAGTTTAATGAATGCCCATATTTTATAGAATATATAAAGAAGGGTAGGGAGAAGTTCAT
GCAACAAGCCTTCGAGCCACGTAATCAAATGAAAAAAGACTAATCTAGCCAGCCAGGCTTTAATG
AGCGATGCTCAAAGTCTCCTATTCTTTATACTTTTTCCCATTCAAGTAAAGCTTCCCCGGAAGCG
CATTCAAGAGTCAGGGATGTTTGAAGCTAGCTCAGAAGAAAAGTCTCCGTATCCTAGCTCTCGAA
TATCCCCCCAGCCTTCGGAACTGTTTACAAGCCAGTGCATTAAAGTCAGTGAGAGTAAGTAGATG
AAGAAAGAGCCGGCTCTAGATAAGAGGGGTTGCACCTCAGACTTT



Found at i:89198 original size:17 final size:17

Alignment explanation


    Indices: 89170--89211  Score: 66
    Period size: 17  Copynumber: 2.4  Consensus size: 17

      89160 CTTTCATTTC

                              
      89170 GGTTTCGGTAAATTCTGG
          1 GGTTT-GGTAAATTCTGG

                             
      89188 GGTTTGGTAAATTCTGG
          1 GGTTTGGTAAATTCTGG

             *     
      89205 GTTTTGG
          1 GGTTTGG

      89212 CCGGCCCCCT


Statistics
Matches: 23,  Mismatches: 1, Indels: 1
        0.92            0.04        0.04

Matches are distributed among these distances:
  17   18  0.78
  18    5  0.22

ACGTcount: A:0.14, C:0.07, G:0.36, T:0.43


Consensus pattern (17 bp):   
GGTTTGGTAAATTCTGG

Left flanking sequence: Indices 88670 -- 89169
ATAGCGTCGTTGGATGCTCGTTCCTCTCCCTTACGCTCTCGCTCCTCTCCTTTCAGTCGAGCATC
TTCGCTCCTTTTCGTTCCACAATACCTTCTTCCTAATCTATTAATAATCAAGCAAGCTGGCTAAC
ACACCAAAAAAAAAGTTCAGGTTAACATTAAGATACGACTAGGTAGGGTTATTCTACCGTAAAAC
AAAGCTTCAATATATCTCTTATCTCTAATTAAGTCCATTTGAAGGAGGGACACGTGGCTAATGTG
GAAAAAGAGGATAATAAAATCTATATAAAGTCAAGGCGGCGCGGCGTCCGCCTTGGAGTCACATC
ATAAACCCGAATAAGAAAGAGCTTGTAAACTCTATTTTCAAGCATCCAATATCTCGTATTCATAT
TTCGTATTCAGCGTGTCTATTTTCAATTCGATTTGGTGTGTGTTGTGCTATTTCGCGATTCCATT
TTTGGATATTCTGGTTCTATTTTCTATGTATTATGCTTTCATTTC


Right flanking sequence: Indices 89212 -- 89711
CCGGCCCCCTCTAGTGTGCCCACTATTTACTATTTTCATTAGCCCGCCCTTTGGCACGAGTTTGG
AAGCTTCTGGTTCTTGAATGGAGCAAACAAATGCTTAACACGAACATGAATCGATGTTACTTGAG
TCCTAGGACTAGCGGAATGGTAAGGCCCTATTTTACTAGTGAATGCTTTACGAATCGCTTTTTCT
ACTATTTTCCAGTGAGGTCACAAGGGAGTTTACAATGTCGGTCGAATTTCTTCTACTCGAAAGGA
GTTGGACAATAACTAATAGATTCCGATAAAGAAATGCCAGTACTTAAAATCCGGCTCCTGAATTG
GATTCCACCGTAGATTTATCCCCGACTTATTAATCTGATTGCAACCTTGATCGAACGCTACGCGC
CTGCTTTCATTGCAGGTAACGGAATCCTGGACCTTAACCTTATTTCTCGCGGATGGAGAGGGATT
CGAACCCCCGGTATTAAAAAAATACTTCGGTTTTCAAGACCGACT



Found at i:100581 original size:17 final size:17

Alignment explanation


    Indices: 100559--100592  Score: 50
    Period size: 17  Copynumber: 2.0  Consensus size: 17

     100549 GGGAGGAATG

                   *         
     100559 AATACTACTTATGGCTA
          1 AATACTAATTATGGCTA

                      *      
     100576 AATACTAATTCTGGCTA
          1 AATACTAATTATGGCTA

     100593 CTATGCTATT


Statistics
Matches: 15,  Mismatches: 2, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  17   15  1.00

ACGTcount: A:0.35, C:0.18, G:0.12, T:0.35


Consensus pattern (17 bp):   
AATACTAATTATGGCTA

Left flanking sequence: Indices 100059 -- 100558
ATGCTTGCTTCTCCTCGACCTACCTCTTCGGTTCACTAATTCTTTTTCCTTCCTCCGCATGCTCT
GTCGTCAACTAGAGCTTTTGGGTGGGCATAGGCTAGCACTTTGATTTAGCCTTGGATGTGCTTGC
CTAGAAACCGTGAAGTAGTGAAATGCTCCTTTTCACCGGTTTTATTGTCAATTCCTTTTGCCTTT
GCCATACAAATCATTAGGAATACAATAAATGCTTGGGCTCTTACTTACCTACTCTACCTAAACTC
ATACTTCCTTTCTCTATGCTTTAAACTAGCATAACAGTCTTTCTTACACAAACTACGGCGCATAA
CAGTTATTCAACTGAACCATCAACTCCTACCTTCTCTCTGATCTACTCCTCCTCTATTCTCTCTA
TGGATACAAAAAAAAAAGCCAATTAAACCAATTAAGTTATGCCTAAAAAGATAGATAGAATACAA
ACTCTAAGCTACAATGCTCTCAATCCTACAATGCTGGGAGGAATG


Right flanking sequence: Indices 100593 -- 101092
CTATGCTATTCATGGAGCAATACCGATAAAGGTAACGTTAAGCTGTTATCCGATAAAGAAATCGT
GAAGCTTTTAAATGCAATGGGTTTACCTGTCCAAAGCAAAAGCAAGGGTTTAGCTTTCAAGGTAA
AGGTAATTCCTAATGCTCTCCACAAAAGTGAAGCAGGAATGGGCAAGCTGCAGAGGAACCTACAA
ACTCCTAGCCTCTCTTTTCCCTATAAAACCTAGAGAAACTCCTCTCTTTACTAGCTAGCTGAACC
CTACTCTCTGGACTTACCAAAAGCAGGAATCTCAAAGCAGAATCTATCTTTTAAGGAATAATATA
TGGAAATACGGAATCTATGCTCTACTAATCTTTAGAAGCTAACCACCATTACTATTGTACTGAAA
CCCTAACCTTTACTCTACTTAAACTCTTTAGAGCTCTGGATAGGTAAAGGAATCTCTGCTGAAGA
GGAAACTCCATGGATCAATCAGAGTAAACACCATCCTACTCTGCC



Found at i:112681 original size:16 final size:16

Alignment explanation


    Indices: 112660--112692  Score: 66
    Period size: 16  Copynumber: 2.1  Consensus size: 16

     112650 TTACCTCCTA

                            
     112660 AGGTATCTATATGCCT
          1 AGGTATCTATATGCCT

                            
     112676 AGGTATCTATATGCCT
          1 AGGTATCTATATGCCT

             
     112692 A
          1 A

     112693 TTGCTTTCTC


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  16   17  1.00

ACGTcount: A:0.27, C:0.18, G:0.18, T:0.36


Consensus pattern (16 bp):   
AGGTATCTATATGCCT

Left flanking sequence: Indices 112160 -- 112659
TCAAAATAAGAAATAAGAATTGTGGTATTGCTTTCTGCTCGCTCTGTCTTTCTTTCTTGCTTTGG
TTTGAGTAGCTTTTGTCAGTGATACACTACTAATGTTACGAGTGAAAAGGGATGGTATGCTTTAA
ACACTGATTTTATTGGTAGCTAGGGAGGGTTTTAACCTTACTACTTCCGAAAGTACTGGATTAAT
AAAGTACACTACATTCTTTTCTTCATAACTTAATTCTACCGCTGCGCACCTTGTCAACTAGGCAA
GAAAGAACTTGCTTGTTGAAACTGATTCTAGCTTTACAAACTACACTAATGAAGTTAGAAACTAC
ACTACTCTCTCCTTACTACAACCTTTTCTTTAGAAGACAAGCGACGGAAAAAACTTGAAACACTG
AACAACTTGTTGGGATTGAACTATTTGCTTTGTTCCTATCTCTTCTATTAGTTAGGCATCTATCT
CTGCTTCCACATACAACTTGAATTTCTTACCTAGCTTACCTCCTA


Right flanking sequence: Indices 112693 -- 113192
TTGCTTTCTCGCACCACTCTACTTGCCTACAAGTAATAACTCGAGATGCCAACTCTTTTACTAGC
TAAAGCAGTGCTTGCTTTGTAGTACTAAAGCATTTGACTTGCCTAAGAAACCTCGGTTACACCTA
TCTCGGTAATAAAAATAACTATCTCGGCCGTAACCTTGCTTCTTTAAAGAAAACTCTATGAGTTT
CTTAAAAAAAATAGGAAAAAATAAAGAAACTACTTACTTTTCTTGCTCCCCCATGCCCCCTTTCA
TATGAGCACTCACTACACTGCCCGCTACCTTACTTTCTTTGCCAGGTCTTTCTTTCCTTCCAAAC
ATGACTTTCTTGCTCATTGAGGTCTTCTTTCCTAGGGAGCTCAGCACGATGTTACTTAAAAGATC
ATTATTAGATTGGAGTTGCTAACTAATATGATAATAAAAGAGAACTCCTTCTTTGTATTGGTCTG
CCCGTCTTTACTTGATTGATAAGTAGTTTTTAATATGAATGAGTA



Found at i:116834 original size:35 final size:35

Alignment explanation


    Indices: 116782--116851  Score: 122
    Period size: 35  Copynumber: 2.0  Consensus size: 35

     116772 CACATGCCCC

                                               
     116782 TTTACCAATGCTAGTGCTAGCATCAGACTTGAATA
          1 TTTACCAATGCTAGTGCTAGCATCAGACTTGAATA

                *       *                      
     116817 TTTATCAATGCTGGTGCTAGCATCAGACTTGAATA
          1 TTTACCAATGCTAGTGCTAGCATCAGACTTGAATA

     116852 ATAATAATAA


Statistics
Matches: 33,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  35   33  1.00

ACGTcount: A:0.30, C:0.19, G:0.19, T:0.33


Consensus pattern (35 bp):   
TTTACCAATGCTAGTGCTAGCATCAGACTTGAATA

Left flanking sequence: Indices 116282 -- 116781
GCTCCTACTCTCCTCAGTAAGAAAGTGTTCTATTTAATAATGTGAGGGAAGTTTCATTTCATTGG
AAAGAAAGTATCTGTGGTGGGTGGTTTTCTTTCTGCGAGTAGTCAAAGCACTGAAGAAAAGCAAA
GAGTCGAGTGAAATTCCAATATGCTGCTACTTGTTTTCTCTTTTCGGCAGATCGCATCCTCTTCA
GTTGACTTTGTCTTCTCTCTCCTATGCTACTGGAGCTACTGGATATGTACCTCCGTCTGATAGAC
TAGACCAAGGGGGGGGATGCTCAGAAAAAAATAAGAGTATTCTTTTGGAAATCCGAAGGAGAAGG
AGAAAGAAGAAAACACCAGCCGTACCGCCTTGGCTGATCTTCCCCCGATAGATTCCACGGTGGTT
GCTCAAGAATTGACTGGGCCGGTATTCCCTTCTGAAGTGCTAATGCAGTCCGTGTCTTCACATCT
GCGGTTGCCGAAAATAAGACTAAAGAATAAACCTTCACATGCCCC


Right flanking sequence: Indices 116852 -- 117351
ATAATAATAAACATGAAGTGGTGCAAGGGAGAATAAAGAATCCATCTCGTTGTGAAAAAGGAGAC
CCTAAATCAGATAAGGGCGGAAAGCGCTACCTGGGGCGCGTGCGAATCGAAGAAAGTGTGACAAG
TAATGTGGCATTAACATTTAACTGATTGGCCTGGCCACTCTATTTAGCTTTCCCATCTCACAAGG
CAAGTCTATAAATTTGGGTAAGAAAGATTGCTATTCCTTGCGTCGTGTTGAGTTCTGGCTTCTAG
GGCGTAGTCAAGATAAGATTACTCTTTCCTTGGAGCCGGATTGAGCTTATCGTCTCCGAATCTTA
CTCAAAAAGAGTCTATTCTGCGGACGCAGAGGAAGAAATCCTTGCTGGGTAAGAAGATGCTGACT
TTACCGTGGAAAGACTAGTTCGAGGAAAGCCTTTTATTATCTACTTTCTTAGCTCCCTTGTTCGA
ATCTACCGTTCGTGCGTGACCCGGAGCAGGTGGATTTACTAGAAA



Found at i:130149 original size:16 final size:14

Alignment explanation


    Indices: 130127--130168  Score: 52
    Period size: 12  Copynumber: 3.0  Consensus size: 14

     130117 GACTTAGAAC

                          
     130127 TGACTACTTGATTG
          1 TGACTACTTGATTG

                            
     130141 CTAGACTACTT-ATT-
          1 -T-GACTACTTGATTG

                          
     130155 TGACTACTTGATTG
          1 TGACTACTTGATTG

     130169 GGGGGGTGAT


Statistics
Matches: 24,  Mismatches: 0, Indels: 7
        0.77            0.00        0.23

Matches are distributed among these distances:
  12    8  0.33
  13    4  0.17
  15    4  0.17
  16    8  0.33

ACGTcount: A:0.24, C:0.17, G:0.17, T:0.43


Consensus pattern (14 bp):   
TGACTACTTGATTG

Left flanking sequence: Indices 129627 -- 130126
AGTATCAGAACTTCCGTAGGTTTCTACTCGACATGCCGGAAGAAGAGAAAGACCGCATTCGAAAA
TCTAAGTATCGGTCCTAAACTCTTTTGTTTCGGGGGAAAGGTGGGCGTGGGCTTTCATCGAAATC
AAGAGAGAGGCTCGGCTGGCGAGTCTGTATTACTTTCCTCTTTCCCCCAAGAACCTTCCCAAAAT
ACACTCCGCTGTCTGTCCGTTATAGTTAATACAGGTCTGAGCTCAATAGGTCATCCAATCTATAC
ATTTCGATAGAGCTGCCTTTACCTTTCAGTACTTACTTCAGATACCTCCAGTGCACCATATCATA
TGCTTTTTTTCGAAATCCAGTGTTATGCTCTCTACTTTGCTTCCTCCATCAAAGGAAGCTATTGC
ACGAAGCCGTCTAAAGTTCCATAAGACTAGAAGGCGAAAGAGAAAGATAGGAAAGGCGTAGCCAA
CTTTCATATAGAAAACTTGGCTTTTTTATGAATTGGACTTAGAAC


Right flanking sequence: Indices 130169 -- 130668
GGGGGGTGATCCATTGACCTTCTTAAGAGCACTTTTGACTATTCTTTGCTTTCGAACCTGCTTAC
TGGATTTTACTTCTGTTCACAACTGTAAAAAATAAACTAGACATACCTACCTATGTTCATACTTA
TACTTTTTGGACTCGTGCCTTACCACTTAAATAGCAAATGCCCATGCGGTTGTCTACCTCTGCTA
CCAAATACCTATCCTGCGTTAACAACTACTTTCAACCTGGGCGTACACGCAGAAGCCTTACTTTG
TGGAACAAGCTACGAACCAGGTGCGAAGCGAGTTCCCGAGTAAGTAGCTCAAAAGAGGGAAATCA
AGCAAGCGATCGTAGGTACGCTATTTAAGCAGATTGGTGTGGAACTCTATTCTCCGCTAGAGTAA
GAGTTATTGTGTAGCCAGGTGAACCAGCCCAATTCCAACCATTCTGTTAGTGTGAAGTGTACTAA
GTGAGAGTTCTGCTTTCATTATCTTTCTCACTAAAAAAAGGACCC



Found at i:143886 original size:15 final size:15

Alignment explanation


    Indices: 143866--143899  Score: 52
    Period size: 15  Copynumber: 2.3  Consensus size: 15

     143856 GCTATCCGAA

                            
     143866 GTATTCCATTTTT-TC
          1 GTATTCC-TTTTTCTC

                           
     143881 GTATTCCTTTTTCTC
          1 GTATTCCTTTTTCTC

                
     143896 GTAT
          1 GTAT

     143900 CATAGTAAAT


Statistics
Matches: 18,  Mismatches: 0, Indels: 2
        0.90            0.00        0.10

Matches are distributed among these distances:
  14    5  0.28
  15   13  0.72

ACGTcount: A:0.12, C:0.21, G:0.09, T:0.59


Consensus pattern (15 bp):   
GTATTCCTTTTTCTC

Left flanking sequence: Indices 143366 -- 143865
TGTGAGTTTGTCGCAAATATCACACGTTAAAGCAAGCCAAATTGTGAGAAATGCCGTATCTAGTG
AGTGCTTTCTTTTTATTCTGCTCTTTCGTCAGAAGATAAAGCCCGTTGGTTTGAAGAAACGGCTA
TCACCTTGCTTGCTTTCCATATGCCACTCCTGCCTCCTGTCTTTCCTTTAAAAATCGCTTTTCTT
AAAGAAAGAGAAATTCCAACCGTATAGGTTGGAATGTTTTCCCTTACTTCACTGGCGGGGAAAAA
GAAAAAGAAAAGAAGTTCACTGTCCAAAAGAGGCAGACATCTAGCCTTTGGCTCCTTGCTTTGCC
GGGGATATATAAACAATATTCGTTGCCTTCCTCCCCTGAGCGGAACTCATGGTCGGTAAGGCTTT
CCTTGAGAAAGTCCGGACTCTTCTATATGGGAGGACAGACGGGCATTCTTTTTTACAGCAGCACT
GAAGGGAAAGACAGTGACGGCAGCAAGCTCGGTGCGCTATCCGAA


Right flanking sequence: Indices 143900 -- 144399
CATAGTAAATTAGTATTCTCCCAATAAAGTAACTGATAGGGCCAATGCAGTAGAACTTTACGGCG
CCAATGCATTCTTTCGTTACGTCGTCATGTTGAGATTTCCTCCACCTATTCCGAAACATCCATCG
TACCTACACCACTCCCCATGCACATTTCTTACTTAATACCGAATTCTCCATATCCGGGCTTAATC
CGGGTGAAGGTTTTATGCTTATTTCAAAGAAGCACTGGCTGGTAAACGAGCTTTCTTTTGCTCGT
AACGTTAGTAGTTACTCGCTGGGCGTAGCTTCTATGTTATATTATCAGAAAAAAAGAATTGGATT
TTCTCTTTTTTCTACAACGAATGATACCTACTGAACAATTGGATAAACTGGCCCTATTATTAGGC
TTCGGTATGAAGGTTCGGTACATCGGGGAAAAGCGAAAGGAGCCATTATGAAGTGCCTCTTGTAT
AGCTAGAACCTCCTCTTTCTAAAGATTCGGGTACTTTTTTTGAGC



Found at i:158169 original size:20 final size:20

Alignment explanation


    Indices: 158144--158184  Score: 73
    Period size: 20  Copynumber: 2.0  Consensus size: 20

     158134 TCCCCCCGTA

                         *      
     158144 GGATTTCATCTCAGTAGGTT
          1 GGATTTCATCTCAATAGGTT

                                
     158164 GGATTTCATCTCAATAGGTT
          1 GGATTTCATCTCAATAGGTT

             
     158184 G
          1 G

     158185 TGGTCTTTCT


Statistics
Matches: 20,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  20   20  1.00

ACGTcount: A:0.22, C:0.15, G:0.24, T:0.39


Consensus pattern (20 bp):   
GGATTTCATCTCAATAGGTT

Left flanking sequence: Indices 157644 -- 158143
AAGCCATTAATTATATATATGGTTGGGTTGCCAAGCCGAGGAAGACTTTCTTTACGCGAGAGATG
TTTTCCGGATCATACGGAGATTTTCTCAGTCTCACCTTTCACCGATTCCGTCTTTTGTCCCACCG
TGTGTCATTTCAATTGAATTCCAATTCTGTTCCCTGAGATCAGTACGAACTGAGAGATGTGAAGA
ACTAAAGCAGCACATATATTTTTATGAATGTGATCGCCGCGTCTTTAACGTACCTTGGGCTAGCC
AGATCTTTCCATGCTTCTTCACCCCGGGGTCCCTCCCTGTATTCCACCTCTCGGTAGGGGGAAAC
CCATTTCTACTAGCAAAGCAATTGCAGCCTCAGAAGGTGGTGGACCCGCCAGACGCGAACCACTG
CTACCACTCCCTGTGTTTTTCACCTCAACCCCAGAGTACACATGCCTCATGATAGATGTCAATGC
ACTAACAAACTCCAAGTTGCACTCGGCACATCACCTCCCCCCGTA


Right flanking sequence: Indices 158185 -- 158684
TGGTCTTTCTCCAATCGATCTATACCATCCCCGATTACCAGAATCTCCCTCTCTTCTTTCTACTT
AATGTTCATCCTCGTCACTGAGCGGATCATCTATCACAACCTCCTTATTTTTATTCTTTTTTTTG
GCGCTTGCCGCTAAGGAAGAACTTCTGTCTCAAAGAATTTTTTATAAGAATAAATATAGAAAAAT
AGAGTCAAGTTTTATTTTATTTGATTGGAAAAAAAATATATTGTATGAACACTCAAATGTGTAAT
ACAGTCGTACTGTATGCGTTTCTAATGTTTTGAATAGAAAAAAAGGATTTCCTGAACTGAATCTC
AGTAAAACCAAATCAAGCAACCTGATTTATCTTTTGATCGCAACATCAAATCTAGGTTCAAACAA
ATGGCAGATTGTAGGTTTATTTATTGTTTTTTATTTCTTATTCTAGGAATTCTTAGATTAAGACC
GATCTTTTCGTAGGTTCAATTCCTACTGGATGCACGCTAATGGGA



Found at i:174431 original size:20 final size:21

Alignment explanation


    Indices: 174392--174433  Score: 59
    Period size: 21  Copynumber: 2.0  Consensus size: 21

     174382 TGTGACTTGG

                    **           
     174392 CTTAAGAAGTAAAAGACCTTT
          1 CTTAAGAAAAAAAAGACCTTT

                                 
     174413 CTTAAGAAAAAAAAG-CCTTT
          1 CTTAAGAAAAAAAAGACCTTT

             
     174433 C
          1 C

     174434 CAACGTGATT


Statistics
Matches: 19,  Mismatches: 2, Indels: 1
        0.86            0.09        0.05

Matches are distributed among these distances:
  20    6  0.32
  21   13  0.68

ACGTcount: A:0.45, C:0.17, G:0.12, T:0.26


Consensus pattern (21 bp):   
CTTAAGAAAAAAAAGACCTTT

Left flanking sequence: Indices 173892 -- 174391
TAGTGCTCAATCTGTTACTTCCGATACAGAAGCTTACCTACCAGTATTTGCTTACCTAGCAGATG
CTTTTTCCGAAGTTTCCAGTTCATATTCACCTAGGCCAGCCTGTCTTCCAGGTTACCCAAGCCAG
CTAGTAGCCCGTGCACACCGCTCAATCTTTTCCCGCTTTTACCGTGTCAAGCTATTATCTAAAAG
CTTATTCTTTTGAAACCGCGCATACTTGCCTTAAACACCTATCCTAATTTATAGCCTATACCTGA
ATACCTTGCTTCTGCTTCAACTAAACCAGTTACTGAATCGTTACCAGTGACTGTATCCTCTCTTT
TTCAATGTTTAACACAGAAGAAACCTGTTCAGCTACTAAAAGCTTATCTTTCCCTATTAATCCAA
ACAAACCCTATCTGTTTCAGCCTATTTTGCTTTTTTTTATGCATCTATTGCCTATTAGACTTTCC
CTGGGAATTAGAAAACTAGCCTAGCTTAGACAACCTGTGACTTGG


Right flanking sequence: Indices 174434 -- 174933
CAACGTGATTTCTTCTGTTAAATAAGTCAATCTTAGGTTGAACTTGGAATTTCTTTTTCCACTAG
GCCCAGCAGCTGTGGCCGTGATACCTGTTGGATGGGAATTCTTCCCTTTTCCTATCAACTTTACT
GTAGTAACATGATCCTCATAGAGAACTGCTTCGATTGCATTGACCACAATCTACTACTTGTTTTT
TTTAGTCAGAAGTTGGGTTTCGAGAACACTGGTTTCGTTGATCGCCTTTTGGTCAACCCTTGACC
AGTTCCAGTTATGGTTGAGGTAGCTCAGCTACTTCTCTTCTTACTTTTTGGTCTTATCTCTCGCT
CAGATACTATATTATATCTAATGAAAGGCTCAAATCCATGCCGTTCAAAGCCAGTGAATGTTCCG
CTCGCTCCTTCCTTTCCCGGATCGCTGCTGCTATTGATCAAATAACTTGCTTGGTGGGTTGTTTG
CACTGCTTTTGCAATGGGGGATTGAAGGGCTGGCTTGCCTTCCTG



Found at i:178501 original size:29 final size:29

Alignment explanation


    Indices: 178468--178561  Score: 82
    Period size: 30  Copynumber: 3.2  Consensus size: 29

     178458 CAATTCAATC

                                         
     178468 CGATCCAGTCGTTTTTAGAGCTAGTTCCT
          1 CGATCCAGTCGTTTTTAGAGCTAGTTCCT

                   * * *    *     * *    * 
     178497 CGATCGCGGACCTTTTAAGA-CCAATTCAAT
          1 CGATC-CAGTCGTTTTTAGAGCTAGTTC-CT

                           *              
     178527 CTGATCCAGTCGTTTCTAGAGCTAGTTCCT
          1 C-GATCCAGTCGTTTTTAGAGCTAGTTCCT

                 
     178557 CGATC
          1 CGATC

     178562 GCGGACCTTT


Statistics
Matches: 46,  Mismatches: 15, Indels: 8
        0.67            0.22        0.12

Matches are distributed among these distances:
  29   14  0.30
  30   23  0.50
  31    9  0.20

ACGTcount: A:0.21, C:0.27, G:0.19, T:0.33


Consensus pattern (29 bp):   
CGATCCAGTCGTTTTTAGAGCTAGTTCCT

Left flanking sequence: Indices 177968 -- 178467
AGTAGAAAGAATCGCATGAAATCCTTTGATAACACGGATTCCTATTTCTCCATCATACCCCATGA
TCGAGACAATTGGCTGAATCCCGTGAAAGCATTTCATAGAAGTTCTATGATATCTTCTTTTTATA
AAGCAAATGGACTTCGATTTTGGAATGATCTACATCACTTTTGGTTCTGGGTCTCTTGTAAGAAA
AGATTTCCCTTTTTTGTGGAAAAAATTCGTATCAATAATGAGGATCTTACATATCGAAAATTCCT
CAATATCTCATTTATTCGCAACAAAATAGTTTCTTTGTACGTCGGTCAAAAAAAACATTTTGTTT
TGAGTCTTTCTGCAAGGGTATCTGACATAAACATACCTCAGGATCAGGATTTTCCAAAAAGTAGC
GACAAAAGAGAGAACTTGTACAAATCTTTCATGTATAAATTGTATCAAAAATTCTATAATAGATT
CTATACATCTTTCATTTTTCCAAGAACTCTTTATGCAATTCAATC


Right flanking sequence: Indices 178562 -- 179061
GCGGACCTTTTTAGATTGGAAAAAACTTTTTGGCAATCTTTTTCAGATATGAATCGATCTGATTC
AAAAATGAAGAACTTGCATCAGTATCTCAGTGTCAATTCAAACATGGACTGTGGATCAAATCCAT
GTTCTGAGAAATCTTTACCATCCGGAAAGAAGGAAAAAAGGAGTCTTTTTGGTTTTCGAAGTAAA
AAGAAATACGTTAAAAAAAGAAATATCAAAATAATCAATAAAAAAAAACTTTTTTCTGTAAAACT
TTTCGAAGGGAATATTGAAGAAAATATTATTTACTTAGAATGGACTATTTACAAAGAATGGCTGC
TCACGATCTTTACTACGAGCGGGTTCAAATATTTCAGATTCATCCTTTCCGAGATTTTTTCCTAT
TTTATATTCCCAACCGTGATATCCAAAATTCAAGATATTCTGGATATACCATGGGTATATCTTGA
GAAGATTTTGATGAAATGGACTCTGATAAGTGAGAAGATTTTGAT



Found at i:178551 original size:60 final size:60

Alignment explanation


    Indices: 178458--178572  Score: 212
    Period size: 60  Copynumber: 1.9  Consensus size: 60

     178448 ACTCTTTATG

                                    *                                   
     178458 CAATTCAATCCGATCCAGTCGTTTTTAGAGCTAGTTCCTCGATCGCGGACCTTTTAAGAC
          1 CAATTCAATCCGATCCAGTCGTTTCTAGAGCTAGTTCCTCGATCGCGGACCTTTTAAGAC

                      *                                            
     178518 CAATTCAATCTGATCCAGTCGTTTCTAGAGCTAGTTCCTCGATCGCGGACCTTTT
          1 CAATTCAATCCGATCCAGTCGTTTCTAGAGCTAGTTCCTCGATCGCGGACCTTTT

     178573 TAGATTGGAA


Statistics
Matches: 53,  Mismatches: 2, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  60   53  1.00

ACGTcount: A:0.22, C:0.27, G:0.18, T:0.33


Consensus pattern (60 bp):   
CAATTCAATCCGATCCAGTCGTTTCTAGAGCTAGTTCCTCGATCGCGGACCTTTTAAGAC

Left flanking sequence: Indices 177958 -- 178457
CTCATCCCATAGTAGAAAGAATCGCATGAAATCCTTTGATAACACGGATTCCTATTTCTCCATCA
TACCCCATGATCGAGACAATTGGCTGAATCCCGTGAAAGCATTTCATAGAAGTTCTATGATATCT
TCTTTTTATAAAGCAAATGGACTTCGATTTTGGAATGATCTACATCACTTTTGGTTCTGGGTCTC
TTGTAAGAAAAGATTTCCCTTTTTTGTGGAAAAAATTCGTATCAATAATGAGGATCTTACATATC
GAAAATTCCTCAATATCTCATTTATTCGCAACAAAATAGTTTCTTTGTACGTCGGTCAAAAAAAA
CATTTTGTTTTGAGTCTTTCTGCAAGGGTATCTGACATAAACATACCTCAGGATCAGGATTTTCC
AAAAAGTAGCGACAAAAGAGAGAACTTGTACAAATCTTTCATGTATAAATTGTATCAAAAATTCT
ATAATAGATTCTATACATCTTTCATTTTTCCAAGAACTCTTTATG


Right flanking sequence: Indices 178573 -- 179072
TAGATTGGAAAAAACTTTTTGGCAATCTTTTTCAGATATGAATCGATCTGATTCAAAAATGAAGA
ACTTGCATCAGTATCTCAGTGTCAATTCAAACATGGACTGTGGATCAAATCCATGTTCTGAGAAA
TCTTTACCATCCGGAAAGAAGGAAAAAAGGAGTCTTTTTGGTTTTCGAAGTAAAAAGAAATACGT
TAAAAAAAGAAATATCAAAATAATCAATAAAAAAAAACTTTTTTCTGTAAAACTTTTCGAAGGGA
ATATTGAAGAAAATATTATTTACTTAGAATGGACTATTTACAAAGAATGGCTGCTCACGATCTTT
ACTACGAGCGGGTTCAAATATTTCAGATTCATCCTTTCCGAGATTTTTTCCTATTTTATATTCCC
AACCGTGATATCCAAAATTCAAGATATTCTGGATATACCATGGGTATATCTTGAGAAGATTTTGA
TGAAATGGACTCTGATAAGTGAGAAGATTTTGATGAAATGGACTC



Found at i:179051 original size:33 final size:33

Alignment explanation


    Indices: 179014--179090  Score: 145
    Period size: 33  Copynumber: 2.3  Consensus size: 33

     179004 GGGTATATCT

                                             
     179014 TGAGAAGATTTTGATGAAATGGACTCTGATAAG
          1 TGAGAAGATTTTGATGAAATGGACTCTGATAAG

                                             
     179047 TGAGAAGATTTTGATGAAATGGACTCTGATAAG
          1 TGAGAAGATTTTGATGAAATGGACTCTGATAAG

             *         
     179080 TAAGAAGATTT
          1 TGAGAAGATTT

     179091 CAAATCTTCA


Statistics
Matches: 43,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  33   43  1.00

ACGTcount: A:0.38, C:0.05, G:0.26, T:0.31


Consensus pattern (33 bp):   
TGAGAAGATTTTGATGAAATGGACTCTGATAAG

Left flanking sequence: Indices 178514 -- 179013
AGACCAATTCAATCTGATCCAGTCGTTTCTAGAGCTAGTTCCTCGATCGCGGACCTTTTTAGATT
GGAAAAAACTTTTTGGCAATCTTTTTCAGATATGAATCGATCTGATTCAAAAATGAAGAACTTGC
ATCAGTATCTCAGTGTCAATTCAAACATGGACTGTGGATCAAATCCATGTTCTGAGAAATCTTTA
CCATCCGGAAAGAAGGAAAAAAGGAGTCTTTTTGGTTTTCGAAGTAAAAAGAAATACGTTAAAAA
AAGAAATATCAAAATAATCAATAAAAAAAAACTTTTTTCTGTAAAACTTTTCGAAGGGAATATTG
AAGAAAATATTATTTACTTAGAATGGACTATTTACAAAGAATGGCTGCTCACGATCTTTACTACG
AGCGGGTTCAAATATTTCAGATTCATCCTTTCCGAGATTTTTTCCTATTTTATATTCCCAACCGT
GATATCCAAAATTCAAGATATTCTGGATATACCATGGGTATATCT


Right flanking sequence: Indices 179091 -- 179590
CAAATCTTCATTTAGTACAGCTACTCCGAAAAAAGACTAATCTGTCTCGAACAAAGACTGATTCT
TTTAATGGGTCTTCTCCTTTTCTTTCTTGTACATTTTCATTATTCTTCTCATATAGGAATAAGTC
ATTTATATCGGCTGAGTTCCTCTTTTCAATTATTTTCCTTCTTCTTTTTGCTGGATATCTCGCTT
GTAGAGGTCTTACCTTCATTTGCAAAACCTGTCGTCAGTTATTTCTAGATTTTGAAAAGATCAAA
TCTTGGGCAAATCCATCATGCTTCATGGAGTTGGAAAAACTTAGGGATAGGTATCCTATATCTTC
TTTCAGGTCAGAGAATTTAGAGGATCCCTTTCCAGTTATTTTCCAGGATCCCATTGGATTTATAG
AGAATCCCCGTCCAGTTATTGCTATTCTGCAAAAATACTATGTTATTCTGGAAGAATACATAGGA
GAATTCTTCAATTTTCTGATAGAACTAGGATACCTACTACTTTTT



Found at i:180390 original size:15 final size:15

Alignment explanation


    Indices: 180370--180400  Score: 62
    Period size: 15  Copynumber: 2.1  Consensus size: 15

     180360 CTTCTATTCC

                           
     180370 TTTTGATGTTGATGA
          1 TTTTGATGTTGATGA

                           
     180385 TTTTGATGTTGATGA
          1 TTTTGATGTTGATGA

             
     180400 T
          1 T

     180401 AGTGGCGATA


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   16  1.00

ACGTcount: A:0.19, C:0.00, G:0.26, T:0.55


Consensus pattern (15 bp):   
TTTTGATGTTGATGA

Left flanking sequence: Indices 179870 -- 180369
AGTACAGAAAAAAGGATTAATGAAATTCTATGGAGTTTGACTCAGAGTAATCTTTTAGATGAAAT
AGTGGAACAACCTGGATCCAATTATTTACGGTACTTATTTGAAATGCAGCAAAAGGATCTATTGA
ATTATGAGTTCAATAAATCCTGTTTAGCGGAAAGACGGATATTTCTTGCTTATTATGAGACAATA
ACCTCGTGGGGGACTTTTCATTTGTCATCTCGTCCAACCCCCTTTTCGCTTCGCTTAGCCCCGTA
CCCTTCTAGGAGTGTTTTAGTGATAGGTTCTATAGGAATTGGGCGATCCTATTTGGTCAAATCCC
TAGCGAAAAATTCTTATCTTCCTTTCATTAAGATATATCCGCTCGAGTACCCGTATTTATACGAT
TACGATTGCGATTTTTACGAGGAGTCTTTTTGGTCTTTTTTGGATGGTGAATCATATTGGGTTGG
AGGTGAATTCGAAGAATGTGAGGATGAGAGTATTACTTCTATTCC


Right flanking sequence: Indices 180401 -- 180900
AGTGGCGATATTGCTAAGAATATTAATTTTGATAAGATTCTTTTCAATATGACACAGGATAGGCT
AACTAGCAATAACCCATTTTATTGGGATATGACCGTGCAATTCGATTTGGCAAAAACAATATCTC
CTTGTATAGTATGGATTCCAAACATTCATGATCTGGATCGGGATGAGTTGAGGTATTTATCCCTC
CATCTAGAAGAGAGCTCTCTTTCCAATTCCAAGGATCGTCAAAGATGTTTTACTAGAAATATTCT
AGTTATTGCTTCGACTCATATTCCCCGAGAAGTGGATCCCGCTCTAATAGGCCTGAATAAATTTA
ATACATTCATTAAGATACGAAGGCTTACTATTCCAGAACAACGAAGGTACTTCCGGATTCTTTCA
TATACTAGGGGATTTGGCTTGGAAAATCAAATATTCGATAGTAAGAAATTTGGGTCTATAACCAT
GAGTTCGAATGCACAACATCTTGTAGCACTTAACAATGAGGTCCT



Found at i:182473 original size:13 final size:13

Alignment explanation


    Indices: 182455--182481  Score: 54
    Period size: 13  Copynumber: 2.1  Consensus size: 13

     182445 GGCGAACAAC

                         
     182455 CAGAGTAGAAAAA
          1 CAGAGTAGAAAAA

                         
     182468 CAGAGTAGAAAAA
          1 CAGAGTAGAAAAA

             
     182481 C
          1 C

     182482 GGATTCATTC


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   14  1.00

ACGTcount: A:0.59, C:0.11, G:0.22, T:0.07


Consensus pattern (13 bp):   
CAGAGTAGAAAAA

Left flanking sequence: Indices 181955 -- 182454
TCTTCATATATAGAAGAAGACAGTTGGTTCCATAAGGGAGAAAAGTACTACGAATTGTTGGGGCG
TCGTCAGAGATGGCAAAGAAGACTTAGAATCAATAGTTCCTTATCTAAAGGATCTTTCTCCTCTC
ATATTCTGTTCGAGAGTTATCAGTATTTAGCGAATCTGTTCCTATCTAACGAAAGGCTATTGGAT
CAAATGACCAAAATATTGTTGAGAAAGAGATGGCTTCTCCCGGAGGAAATGAACCATTTGATTTG
TGGAACAGGAGAAAGATTTCCCATTCCTTATCCGTAAAGATATGTAGCCATGAAAAAGGGAAAAG
GCCTAGCGTGGAAGAGGATTGGCCGGGTGGTTGGTAGAGTCGTGGAAACACTTGTTTATTCGATA
TTTTGGACCTTAGTTCATACAAGCATAAATTTCAATCTTAGATCAAAGCACTATGTACGGATGAT
ATAAACTGCCTAAACAAGAATTCCTTTCTTGTTTAGGCGAACAAC


Right flanking sequence: Indices 182482 -- 182981
GGATTCATTCGGATCGACATGAGGGTCCAACTCCATTGGATTGCCAGAATCCATCTTGTATATTT
GAAGCAGGTTGACCCCCGTGCTTCTCTCATGGTACAACCCTCTTCCTGCTGAGCTGAGCCCCTAT
CTCCTCGGCCCACAGAGGAAAAATGTAAGGCTGGTGCTCAAAATTCATTACGGAAGAAAGGACTC
ACAGAGCCAGGATCACTAGGGGGATCACTAACTTCTACTAAAACGAATACTAATATAATAGAAAA
GAACTCTTTTTTCTGTATACTTTCCCCGGTTCCATTGCTACCGCGGGCTTTACGCAATCGATCGG
ATCGTATAGATATCCCTTCAACACAACATAGGTCATCGAAAGGATCTCGGACAACTCACCAAAGC
ACGAAAGCCAGAATCTTTCCGAAAGTTGATTCCTATTTCAAGAGTGCATAACCGCATGGATAAGC
TTACACTAACCCGTCAATTTTGGATTCAATTGGGGATTTTCCTTG



Found at i:234064 original size:18 final size:19

Alignment explanation


    Indices: 234041--234093  Score: 65
    Period size: 18  Copynumber: 2.9  Consensus size: 19

     234031 TTATTATCCC

                               
     234041 CTACTTTGGTAAGCGAAT-
          1 CTACTTTGGTAAGCGAATA

                         *  *  
     234059 CTACTTTGGTAAGTGATTA
          1 CTACTTTGGTAAGCGAATA

                *            
     234078 C-ACCTTGGTAAGCGAA
          1 CTACTTTGGTAAGCGAA

     234094 CTCGTAAGGG


Statistics
Matches: 29,  Mismatches: 5, Indels: 2
        0.81            0.14        0.06

Matches are distributed among these distances:
  18   28  0.97
  19    1  0.03

ACGTcount: A:0.28, C:0.17, G:0.23, T:0.32


Consensus pattern (19 bp):   
CTACTTTGGTAAGCGAATA

Left flanking sequence: Indices 233541 -- 234040
GTTGGCACTCACTGGTATTCACGGATATATGCTAAGACTAGTTGGCATAGGTAGCTTGGTATAGA
CTGATTAGCATGGTATCCAAGTAGATAGTAAAAAGAGTAGCGTTATAGGCAGCTTGGTTGTGAAA
GAGAACCTATATAGATCGATTGGGTAGTAGTAGTTCAGTCAAAAAGTAGTAAGAGTTGCGGATAA
GAACTGGTTCTGTTATGCTAAAGACAAGATCTTTCTTCCAAAAAGTGCAATCTGATGTGTCAGCT
TTCGGGTCAAGCGAGGATTATGCAATGCAAGGGCGGAGCTTTTTTATTGTTTTTAAGCTTAGAAG
TAAGTGGAGTGTTTTACTCCCACTTTCACCGGTCACCTCAAAGTGTTAGACGCCAGCTCCCTATG
GGCACCTTTTTACCGCCCGCGAGCACACTGGGCCTTTTCCAAGCAAACGTATCCGAGGTTTATCC
CTTTTGCGCATTTGGGCTATGAAAGAAAGGCCTACTTATTATCCC


Right flanking sequence: Indices 234094 -- 234593
CTCGTAAGGGGCAGATCTAGATGGGAATCTCGCTTCTTACTTTTAGCCAGCTCTAGGAGTAACAT
AGCTTGATTGATGTCGTAGTTCCAAAAGAACGGATCCTAATCTTCACCTACAATCTGTCTGAACC
CGGGTCAACCATTGAGAATCTACCCTCAAACGCGTTTTTCCTTACATATTAAACCACCCCATTAG
TACATGAAAGCAGTAGCCACTACCACTGCAAAGAGGCTCCTTTGAGATGGTAATACGCGAGCACT
GGGCTGGCAAAATCTTGCTTTTCTTTCTCCTGTAGATATAGAAAGACCAAAGTCAGTCTGAGGAC
GATTCACTTCACAATATCTTGCACGCCACACGGGCACGGCATAGCTCTTGTCAACTAGTCTTGCT
TTTTTATGGCTGCCAAAGTTATATCTTTTCTCTACTCCTTTTTCTTGTAAGTAAGTTCCGGCTTA
TTCAAGTAGTAGTGCGGCTCCTTCAATCACTCGCTCTCCAATGGA



Found at i:245839 original size:20 final size:20

Alignment explanation


    Indices: 245811--245853  Score: 77
    Period size: 20  Copynumber: 2.1  Consensus size: 20

     245801 GGAATCCTCT

                *               
     245811 ATTATACATTACAATACTGC
          1 ATTAGACATTACAATACTGC

                                
     245831 ATTAGACATTACAATACTGC
          1 ATTAGACATTACAATACTGC

               
     245851 ATT
          1 ATT

     245854 TAACTCTATA


Statistics
Matches: 22,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  20   22  1.00

ACGTcount: A:0.40, C:0.19, G:0.07, T:0.35


Consensus pattern (20 bp):   
ATTAGACATTACAATACTGC

Left flanking sequence: Indices 245311 -- 245810
ATGAAAGTGGTACACCGATAAGGGATCAAATTAGGTAGGGAGATCATGACGAAATATCTCAAACG
CGTGATCAAGCTATCGCTCCTAGGCAATAGACCGGTATAGGGCTTGATGCTTTAGACAGGGACCT
TCGGCCTTAGGGAGGACACTGACATTGGTAATTCTACGATAGGAATCAGCTGCTGAGGTAATCTT
ACCAAACAGACGGGACACTCTCACTGGAATAGGCCTTTGGAAAGAATACTACTCCATACGACTTC
AGGCGGAACTTACGGAGATTCAACTTCTCCACGGATATGACCTGGGCAGGGGGCATATGACGAAT
ACATACAAAAGTGATCAAACCAGTCTTACAGAGCAGTAAGTGAATGGGCAAAGTTACGTGGCTAG
TGGACTCTCTTTGGTTTGGGGGGCTGAAATCCCACATTGGACATAGGAATACTGGATTTTACATG
CAAATACCCTATTTTCTAATACTCTATTGAACGTGGGAATCCTCT


Right flanking sequence: Indices 245854 -- 246353
TAACTCTATATTACTGCAGTAAACATTTGCCTACTAAAATGACACATTTGAATACTTTAATTCGA
CAGTAGATTACTTGGAATTCCAACTTGACGCCGATCGATACACTTACTCACAGTGAGACTTGCCT
GCCAATATAGAGATCTCGGGTAAGATGCTTTAGATACACACATTTCCGGAATTAGGCGCCTGACT
CTTGGGATTTATGACTTAGTAATTCGCTTGGAATGGGACTGACACCAACCGGCAGATGAAACTTT
TCATCAATGAACTTGACTAAAGCAATAAACCTAATTCGTCACCTCTATGGTATACTGAGGAGATT
ATCTAGAAACCCTTGGGGGGATTTTCAGGAACTCCTACATGATCCTCCGGAACAACAATCACGGC
AACAACAGTATGGGAATGGCAAATAAATACTATACAGATAGTTGACTCTCTTTCCTTGCAATTAT
GTATCTTCGAATGCTTCTTTCAGACTGTAACTTATGGACTGTTTG



Found at i:246496 original size:16 final size:16

Alignment explanation


    Indices: 246475--246511  Score: 65
    Period size: 16  Copynumber: 2.3  Consensus size: 16

     246465 TTAACATTCG

                        *   
     246475 GACTATGATTTAGGCA
          1 GACTATGATTTACGCA

                            
     246491 GACTATGATTTACGCA
          1 GACTATGATTTACGCA

                 
     246507 GACTA
          1 GACTA

     246512 CCTTCTGACT


Statistics
Matches: 20,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  16   20  1.00

ACGTcount: A:0.32, C:0.16, G:0.22, T:0.30


Consensus pattern (16 bp):   
GACTATGATTTACGCA

Left flanking sequence: Indices 245975 -- 246474
GACTTGCCTGCCAATATAGAGATCTCGGGTAAGATGCTTTAGATACACACATTTCCGGAATTAGG
CGCCTGACTCTTGGGATTTATGACTTAGTAATTCGCTTGGAATGGGACTGACACCAACCGGCAGA
TGAAACTTTTCATCAATGAACTTGACTAAAGCAATAAACCTAATTCGTCACCTCTATGGTATACT
GAGGAGATTATCTAGAAACCCTTGGGGGGATTTTCAGGAACTCCTACATGATCCTCCGGAACAAC
AATCACGGCAACAACAGTATGGGAATGGCAAATAAATACTATACAGATAGTTGACTCTCTTTCCT
TGCAATTATGTATCTTCGAATGCTTCTTTCAGACTGTAACTTATGGACTGTTTGAAGTATTCCAC
ATACTTCACCTTCTTTCAGTGTTTACTAACTCAAGCTAGAATACTTGGGTTTGAAACAAGTCTTG
CTTTTAAGAAGTCTAAGAAAACCCTGATTTCTACATTAACATTCG


Right flanking sequence: Indices 246512 -- 247011
CCTTCTGACTACAATACACATGGGCACTATGATTGACACTTGAATTAACTCACCTTTTCGACTAT
AATTCCTAAAATTCTATCAAACTTATTGAATTTTTTCTTAGTTTCTTTAGATTATTTACACTATA
ACACTTTGGGGCAAGACTTTAGGACACTTTACCATTTGACTTTAAACACACAATCTGCTACCTAG
CCCTGAGATACTTATCACATTTTCACGAATTTGTAGGGACTTCCTTAAAAATTATCTTCACAATA
CCAAAGGAAACGCACTGGGAATATCCGATCTCACCCTTAGCAAGGGAAGAGTAAACATCCTATTA
CAAGCGGATAGACGACGATTTCACCAAATATGACTGAGACGAGAGAAAACTTACTATCCGAGATT
ATTCTCCTTAATTTCACTCAGTTGACATACACACTTCGGGCTTTCATTCCTCAATCCACTTCTTT
GTTCTATTCTTTCATATACCCTTACCCGGATGCCTAAAAGAAATA



Found at i:247702 original size:20 final size:20

Alignment explanation


    Indices: 247677--247741  Score: 112
    Period size: 20  Copynumber: 3.2  Consensus size: 20

     247667 CTTAAACCAC

                                
     247677 GAAAGGCTTACTTTTGCTAT
          1 GAAAGGCTTACTTTTGCTAT

                                
     247697 GAAAGGCTTACTTTTGCTAT
          1 GAAAGGCTTACTTTTGCTAT

                     *          
     247717 GAAAGGCTTGCTTTTGCTAT
          1 GAAAGGCTTACTTTTGCTAT

            *    
     247737 AAAAG
          1 GAAAG

     247742 ACAGGAGGGA


Statistics
Matches: 43,  Mismatches: 2, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  20   43  1.00

ACGTcount: A:0.28, C:0.14, G:0.22, T:0.37


Consensus pattern (20 bp):   
GAAAGGCTTACTTTTGCTAT

Left flanking sequence: Indices 247177 -- 247676
TGGCACTCCCTCCGCAACATCCAAATTTGGTGTACTTGAGAACAAGGAGACGTTATCCACCAAGG
CGGTTGTTTACCAATCATTGACAACTCAAGAATTTGAAGAAAGGAGTTTGCAATTGATCTTGTCG
GTGCTGGCCTAAATCAAAGCCGAGAGCGGGGGCATAAGTACGTTGGTAGAAGTGAAGCTAGTGAA
GGATGAAGATTTAAACTGTTGAGTATTGTGTGACTTTCATAAAATGACAATAGTTCGTTCATTGT
TCCTTATTCGGGCGGGCTTCATGTCACTTCTTATCAAAGGCCATCCCAACAGGGAATTAATGTAA
CACTTGGATTGAAACTTCACTACAGCATAACATCCGCAGTCTGTCCATGAAAGCGGCTTAATCAA
TGTTTGTTTATTTTAGGTCTATGCCCCTCCCACACTGAAAGTCTATGGTCGCCCCTCCTACACAG
AAAAGTCGGTAAGTAAGAACTTGTGCTCCCGCCGCCTTAAACCAC


Right flanking sequence: Indices 247742 -- 248241
ACAGGAGGGAAAGAAAATCCAACCAGCATTTCCAAACTACTCTATCTAATACGTACGGGTGCTAT
CACTCTTAGCAAACTTGCCGGGTGCTATCATTCTTAGCAAACGCTCCGCGCCTTACTTCGTAATT
TGTAAAAGCTTCTCGAAATTCATTCTTTAGGGCCTGTTAAGTAAATCAATTTCATGCCAACATCG
GCCTATGTCTTCATTACTAGAAAAGAAAGCAGGTTCAGTTCCTTTCTTCTTCGAACTACTTGCTC
CGCATTTTCTTCTTCCCTAGTCTCTACCGTAGTCATTTGAATGGGAGTACTCCTTTTGCATGATC
GCAGTACTTCTCACGGATAGAGCTTCACAAAGCTTTGAGCACTCTTCTCTTCACTCTTCTCTTAG
AGTGTTTATACTCGAACTGCATTGCTTCCACATAAAGGAATATAAAGAAAAGAGGACTTTGATCA
TCATCATCAGTCGAAAGAGAGATATTGCTAGAGAGGGTAGAGTCA



Found at i:248757 original size:16 final size:16

Alignment explanation


    Indices: 248736--248768  Score: 66
    Period size: 16  Copynumber: 2.1  Consensus size: 16

     248726 GCCTTCTTTC

                            
     248736 TTTATATGCAAGCAAA
          1 TTTATATGCAAGCAAA

                            
     248752 TTTATATGCAAGCAAA
          1 TTTATATGCAAGCAAA

             
     248768 T
          1 T

     248769 GGGACCGACT


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  16   17  1.00

ACGTcount: A:0.42, C:0.12, G:0.12, T:0.33


Consensus pattern (16 bp):   
TTTATATGCAAGCAAA

Left flanking sequence: Indices 248236 -- 248735
GAGTCATCTTTGAAGTAATGTCTACTCCCTCTTCTTAGCAGTAAAAATGCCTACTCCTCTTACCA
GGAAATATATTGAGGCTGAAGCAAACCCTGTTTCCAGCCAGCTCTCATATGAAATTATTTAATAT
CTCAGGTAGTTAATTAGATTCGTGACATATTTACATATATGTATATGCCGTGCTAAAGCGAACGA
ATGTATGCTGTGCTAAAGCGAAGGGAATCTCAGTGGAAGACTACGCTGAATGGAATCTGAAGCAG
ACAAAAAGTTGAAGATAAAGAGAGAGACCTGGAAGGTTTGAAACGAATCACATGCGCCGCCCGCC
GCCTGCTTACAAGAGACAGAGCCAATGCGAAAAGGTAATGCTATTTGATAAATCTCTAGTAGTTT
TCATAGTCTGGAAATCTTCGTAGCAATACATTCATTAGTACATAAGAGAGCAAGAATTCCAAATA
CGTAACTATTCAAAAGAATCCACCAAGGGAGCTCAGCCTTCTTTC


Right flanking sequence: Indices 248769 -- 249268
GGGACCGACTTCTTTTTTAGTAAAGACGCATTACATACATTTCGGGATCTTTTTATATCTTCTCT
CTTTAATGACACCTTTTTCTCAAAAACAAGGAAATTCACTCAATCAAAGCAATCCAAGTCCACCT
ATTTCCCAAGCCCGAGTCTATCAATTCCAATATCCTACTTGTTGACCTGGCGCGCACAACACAAG
GGTTTCCTATATCTAGGAAAATGGGCCATACTTTATCTCGAATTCTCCCCTTTTCTTTTTCCTCT
TGCTTTAGGTGAATTACCACCGACCGGTGCTTGGATCTTGTCCTGTGCTTGTACTGGATTCCACT
AAAGTTTAAGATGAACCTTTGTTATTGATCAGGTAGTTTCTTTCCTCAGCTTCTAGGCTAGGCAA
TCCCTATCTTCTTCGCCTTAGCAGGCAGGCTTTTAGTTGCACAAGACTGGCGCGGCACTGGCGTG
TAGTAAGGAGAAAGATGTGTTTAAAAAGCATGGCAATGCCTCCGT



Found at i:289284 original size:31 final size:31

Alignment explanation


    Indices: 289248--289412  Score: 330
    Period size: 31  Copynumber: 5.3  Consensus size: 31

     289238 TATTTAGTAA

                                           
     289248 AGTTCCTCGCCTTTTCACTCGGAACATTAGT
          1 AGTTCCTCGCCTTTTCACTCGGAACATTAGT

                                           
     289279 AGTTCCTCGCCTTTTCACTCGGAACATTAGT
          1 AGTTCCTCGCCTTTTCACTCGGAACATTAGT

                                           
     289310 AGTTCCTCGCCTTTTCACTCGGAACATTAGT
          1 AGTTCCTCGCCTTTTCACTCGGAACATTAGT

                                           
     289341 AGTTCCTCGCCTTTTCACTCGGAACATTAGT
          1 AGTTCCTCGCCTTTTCACTCGGAACATTAGT

                                           
     289372 AGTTCCTCGCCTTTTCACTCGGAACATTAGT
          1 AGTTCCTCGCCTTTTCACTCGGAACATTAGT

                      
     289403 AGTTCCTCGC
          1 AGTTCCTCGC

     289413 TGGGTGAATG


Statistics
Matches: 134,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  31  134  1.00

ACGTcount: A:0.19, C:0.30, G:0.16, T:0.35


Consensus pattern (31 bp):   
AGTTCCTCGCCTTTTCACTCGGAACATTAGT

Left flanking sequence: Indices 288748 -- 289247
TTCATCATGCAAAGTAATAAGTAAAATCAACATGCTATTGTGCATTTTACAGTACCTTTTATGAT
GTTGTCCCCGCAACAATGAAATAATCCCGTTCTTCCTCTGGAATGAAATCTCGTCACATCTCTGA
CGCTGAATTTAATAATTTGAGACCAAAGAATAAATTTCGAGCATAAATACCAGACAAAATAAAAA
ATTAATATTATACTCCATTTTGCAGAGAATTACCATCTGGGTAGATAGCAGATGCACCGGCACAC
CCAGAAAGCCAGTTGAGTTCCTTCTTTCTGAGTATGAAAATTAGACCGACCAGGGACTGCATGAA
AAAATCAATACCCCCGATAAGAAAGGACGACCTGCAGAAGGAAAGTCAGTCTCATTCGTTCCTGC
CGCCCTAAGGAATTTCATAAGCAAGGTAAGATGAAGTAGTGAGCCGGGCGGGCATGCAAGGAGTA
ATTCAGTATAAAAACCAGCCAGCCCTAATTTCTCGTATTTAGTAA


Right flanking sequence: Indices 289413 -- 289912
TGGGTGAATGAAGCAGTTCTCTCTTTAAACTATTATCGTCACTAGCGAATCTAGTTGAGTTGGCG
TAAGATCAAGAAGAACGGAAGCCTATCTTCTTTCTTTGTATGTATCGAGACCAGCAAGAGCGAAG
AAAGCAATAAATAGAATAGAAGTTCCTTAGTAAAGAAAGTATAGCCTCAGAAGGAAATTCTGACT
ACACCTAAAAAGGATCCTATCGATCAGTCTAGGGGAGCAATCTCTCGCCAGAAGTGGTGGTGACA
TGTTGGTGGCAGGCGAGCTTAAAGCTTAATTTCTTCTTTTGTACTTCCATTCTAATACCGCTGAT
ACAACAGATAGGCTTTGCAACCTTATAACGGAAAAGGGGCTGCTATTAAGACTACTTCAACTACA
GGCTTAATCTCTACTCGCAATCTTGTGATGTTCCTTCCGCTTATTAATGCTATAGAAAGGACTAC
TGAGAACTACAATGAAAAAGCCAATCGATACGAGCGTTGTTGGGT



Found at i:290799 original size:18 final size:18

Alignment explanation


    Indices: 290776--290813  Score: 58
    Period size: 18  Copynumber: 2.1  Consensus size: 18

     290766 GAATAAACAA

                              
     290776 TCCAAGCGAGCTACGGTG
          1 TCCAAGCGAGCTACGGTG

                    *     *   
     290794 TCCAAGCGTGCTACTGTG
          1 TCCAAGCGAGCTACGGTG

              
     290812 TC
          1 TC

     290814 TAGACTTCCT


Statistics
Matches: 18,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  18   18  1.00

ACGTcount: A:0.18, C:0.29, G:0.29, T:0.24


Consensus pattern (18 bp):   
TCCAAGCGAGCTACGGTG

Left flanking sequence: Indices 290276 -- 290775
CTTGCTTGGGTTCGCTTAATAATACGTATTAAACGACAATGCGAGTAACAAAGCTTCGATTCTTC
ACTCCTATTACTAGCTTTGAAACTGCTTGCTTCCTTGGTCAAACTAAGGATACAACATATCGAAT
TAGCAAGGCGATACGAAAAGCGTACTCTTGAAAATCCGATGTCCTACTTTTATTGTTATGTGAGC
TACTAATAAGGTGTCAACGACAACAAGAAACTAGAATGAAAAAAGGCAATCCAGTCTGGAAGAAT
AACTTGCTTGACATCATTCAGGTCTCTGTCAAGGATTTGCTTGAGTGAAATCGCCTATTTCAAAA
AGGTATTGATTGAAATCAATCAAGTCTGGTACAAGTACTTGCTTGATTTTCATGAAGTCTATTCT
TTACCAACGGAATTGGGGGATAGAAGCTTGGTGCCATGAATTCTTTTTGTTGGTACTCTCTCTGG
TAAATAGCCCAAAGGAATAAATAATCCAGGTACAGGAATAAACAA


Right flanking sequence: Indices 290814 -- 291313
TAGACTTCCTAGTACTCTCTATTAAACCAAGCGAGCTACGGTGTCCAAGCGTGCTACGGTGTCCA
GTAGGGGCGTGCGTAGGTGTCCAAGCGTGCGTAGGTGGACAGTAGGGGCGTGCGTAGGTGGATTT
CTATCATTGGCAATATATTCGGTACTAAATCCGGAGTCAAATATCCTTAACTGAAGCTTAAGGTA
AGTACAGCTATTGAGAGAAAACATCCACATGTTACGTACCTAGCCAGCACGAAGATGAAAGCAGA
GTCAAAACCCCACGCCACCGTCGAGAGTCGTGCCGAATAGCCCCTGAGCAAGTCAGAGGAAGACG
AAGAAGACATGTGAAGTGTCCCAATAAGCAGACCAGTATATCGATTATTTTCCCTAGAAGGGGTC
AAAAAGTGTAACCAGTGAGTAACTACTAATGTTACGAACAAAGAAGCTCTCTATTTGAAATTGGT
TAATTTGACTCAGCTGACATAGGGAATGTGTGCATTTTGTCTCTA



Found at i:290863 original size:18 final size:18

Alignment explanation


    Indices: 290840--290878  Score: 69
    Period size: 18  Copynumber: 2.2  Consensus size: 18

     290830 CTCTATTAAA

                              
     290840 CCAAGCGAGCTACGGTGT
          1 CCAAGCGAGCTACGGTGT

                   *          
     290858 CCAAGCGTGCTACGGTGT
          1 CCAAGCGAGCTACGGTGT

               
     290876 CCA
          1 CCA

     290879 GTAGGGGCGT


Statistics
Matches: 20,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  18   20  1.00

ACGTcount: A:0.21, C:0.31, G:0.31, T:0.18


Consensus pattern (18 bp):   
CCAAGCGAGCTACGGTGT

Left flanking sequence: Indices 290340 -- 290839
CACTCCTATTACTAGCTTTGAAACTGCTTGCTTCCTTGGTCAAACTAAGGATACAACATATCGAA
TTAGCAAGGCGATACGAAAAGCGTACTCTTGAAAATCCGATGTCCTACTTTTATTGTTATGTGAG
CTACTAATAAGGTGTCAACGACAACAAGAAACTAGAATGAAAAAAGGCAATCCAGTCTGGAAGAA
TAACTTGCTTGACATCATTCAGGTCTCTGTCAAGGATTTGCTTGAGTGAAATCGCCTATTTCAAA
AAGGTATTGATTGAAATCAATCAAGTCTGGTACAAGTACTTGCTTGATTTTCATGAAGTCTATTC
TTTACCAACGGAATTGGGGGATAGAAGCTTGGTGCCATGAATTCTTTTTGTTGGTACTCTCTCTG
GTAAATAGCCCAAAGGAATAAATAATCCAGGTACAGGAATAAACAATCCAAGCGAGCTACGGTGT
CCAAGCGTGCTACTGTGTCTAGACTTCCTAGTACTCTCTATTAAA


Right flanking sequence: Indices 290879 -- 291378
GTAGGGGCGTGCGTAGGTGTCCAAGCGTGCGTAGGTGGACAGTAGGGGCGTGCGTAGGTGGATTT
CTATCATTGGCAATATATTCGGTACTAAATCCGGAGTCAAATATCCTTAACTGAAGCTTAAGGTA
AGTACAGCTATTGAGAGAAAACATCCACATGTTACGTACCTAGCCAGCACGAAGATGAAAGCAGA
GTCAAAACCCCACGCCACCGTCGAGAGTCGTGCCGAATAGCCCCTGAGCAAGTCAGAGGAAGACG
AAGAAGACATGTGAAGTGTCCCAATAAGCAGACCAGTATATCGATTATTTTCCCTAGAAGGGGTC
AAAAAGTGTAACCAGTGAGTAACTACTAATGTTACGAACAAAGAAGCTCTCTATTTGAAATTGGT
TAATTTGACTCAGCTGACATAGGGAATGTGTGCATTTTGTCTCTATAAGGGGGCAAAATGTGTAA
CATTCCTCTCTATTTGACATGAACCAATTTAACTCAGCTGACTTA



Found at i:290897 original size:23 final size:23

Alignment explanation


    Indices: 290862--290938  Score: 85
    Period size: 23  Copynumber: 3.6  Consensus size: 23

     290852 CGGTGTCCAA

                                    
     290862 GCGTGC-TACGGTGTCCAGTAGGG
          1 GCGTGCGTA-GGTGTCCAGTAGGG

                                   
     290885 GCGTGCGTAGGTGTCCA--A---
          1 GCGTGCGTAGGTGTCCAGTAGGG

                         **        
     290903 GCGTGCGTAGGTGGACAGTAGGG
          1 GCGTGCGTAGGTGTCCAGTAGGG

                         
     290926 GCGTGCGTAGGTG
          1 GCGTGCGTAGGTG

     290939 GATTTCTATC


Statistics
Matches: 46,  Mismatches: 2, Indels: 12
        0.77            0.03        0.20

Matches are distributed among these distances:
  18   15  0.33
  20    1  0.02
  21    1  0.02
  23   27  0.59
  24    2  0.04

ACGTcount: A:0.14, C:0.18, G:0.47, T:0.21


Consensus pattern (23 bp):   
GCGTGCGTAGGTGTCCAGTAGGG

Left flanking sequence: Indices 290362 -- 290861
ACTGCTTGCTTCCTTGGTCAAACTAAGGATACAACATATCGAATTAGCAAGGCGATACGAAAAGC
GTACTCTTGAAAATCCGATGTCCTACTTTTATTGTTATGTGAGCTACTAATAAGGTGTCAACGAC
AACAAGAAACTAGAATGAAAAAAGGCAATCCAGTCTGGAAGAATAACTTGCTTGACATCATTCAG
GTCTCTGTCAAGGATTTGCTTGAGTGAAATCGCCTATTTCAAAAAGGTATTGATTGAAATCAATC
AAGTCTGGTACAAGTACTTGCTTGATTTTCATGAAGTCTATTCTTTACCAACGGAATTGGGGGAT
AGAAGCTTGGTGCCATGAATTCTTTTTGTTGGTACTCTCTCTGGTAAATAGCCCAAAGGAATAAA
TAATCCAGGTACAGGAATAAACAATCCAAGCGAGCTACGGTGTCCAAGCGTGCTACTGTGTCTAG
ACTTCCTAGTACTCTCTATTAAACCAAGCGAGCTACGGTGTCCAA


Right flanking sequence: Indices 290939 -- 291438
GATTTCTATCATTGGCAATATATTCGGTACTAAATCCGGAGTCAAATATCCTTAACTGAAGCTTA
AGGTAAGTACAGCTATTGAGAGAAAACATCCACATGTTACGTACCTAGCCAGCACGAAGATGAAA
GCAGAGTCAAAACCCCACGCCACCGTCGAGAGTCGTGCCGAATAGCCCCTGAGCAAGTCAGAGGA
AGACGAAGAAGACATGTGAAGTGTCCCAATAAGCAGACCAGTATATCGATTATTTTCCCTAGAAG
GGGTCAAAAAGTGTAACCAGTGAGTAACTACTAATGTTACGAACAAAGAAGCTCTCTATTTGAAA
TTGGTTAATTTGACTCAGCTGACATAGGGAATGTGTGCATTTTGTCTCTATAAGGGGGCAAAATG
TGTAACATTCCTCTCTATTTGACATGAACCAATTTAACTCAGCTGACTTAGGGAATGTGTCCATT
TTTTCTCTATAAGGGGGATAAATGTGTAACCTTCCTCTTACATAT



Found at i:290898 original size:41 final size:41

Alignment explanation


    Indices: 290853--290938  Score: 138
    Period size: 41  Copynumber: 2.1  Consensus size: 41

     290843 AGCGAGCTAC

                                   **                 
     290853 GGTGTCCAAGCGTGC-TACGGTGTCCAGTAGGGGCGTGCGTA
          1 GGTGTCCAAGCGTGCGTA-GGTGGACAGTAGGGGCGTGCGTA

                                                     
     290894 GGTGTCCAAGCGTGCGTAGGTGGACAGTAGGGGCGTGCGTA
          1 GGTGTCCAAGCGTGCGTAGGTGGACAGTAGGGGCGTGCGTA

                
     290935 GGTG
          1 GGTG

     290939 GATTTCTATC


Statistics
Matches: 42,  Mismatches: 2, Indels: 2
        0.91            0.04        0.04

Matches are distributed among these distances:
  41   40  0.95
  42    2  0.05

ACGTcount: A:0.15, C:0.19, G:0.45, T:0.21


Consensus pattern (41 bp):   
GGTGTCCAAGCGTGCGTAGGTGGACAGTAGGGGCGTGCGTA

Left flanking sequence: Indices 290353 -- 290852
AGCTTTGAAACTGCTTGCTTCCTTGGTCAAACTAAGGATACAACATATCGAATTAGCAAGGCGAT
ACGAAAAGCGTACTCTTGAAAATCCGATGTCCTACTTTTATTGTTATGTGAGCTACTAATAAGGT
GTCAACGACAACAAGAAACTAGAATGAAAAAAGGCAATCCAGTCTGGAAGAATAACTTGCTTGAC
ATCATTCAGGTCTCTGTCAAGGATTTGCTTGAGTGAAATCGCCTATTTCAAAAAGGTATTGATTG
AAATCAATCAAGTCTGGTACAAGTACTTGCTTGATTTTCATGAAGTCTATTCTTTACCAACGGAA
TTGGGGGATAGAAGCTTGGTGCCATGAATTCTTTTTGTTGGTACTCTCTCTGGTAAATAGCCCAA
AGGAATAAATAATCCAGGTACAGGAATAAACAATCCAAGCGAGCTACGGTGTCCAAGCGTGCTAC
TGTGTCTAGACTTCCTAGTACTCTCTATTAAACCAAGCGAGCTAC


Right flanking sequence: Indices 290939 -- 291438
GATTTCTATCATTGGCAATATATTCGGTACTAAATCCGGAGTCAAATATCCTTAACTGAAGCTTA
AGGTAAGTACAGCTATTGAGAGAAAACATCCACATGTTACGTACCTAGCCAGCACGAAGATGAAA
GCAGAGTCAAAACCCCACGCCACCGTCGAGAGTCGTGCCGAATAGCCCCTGAGCAAGTCAGAGGA
AGACGAAGAAGACATGTGAAGTGTCCCAATAAGCAGACCAGTATATCGATTATTTTCCCTAGAAG
GGGTCAAAAAGTGTAACCAGTGAGTAACTACTAATGTTACGAACAAAGAAGCTCTCTATTTGAAA
TTGGTTAATTTGACTCAGCTGACATAGGGAATGTGTGCATTTTGTCTCTATAAGGGGGCAAAATG
TGTAACATTCCTCTCTATTTGACATGAACCAATTTAACTCAGCTGACTTAGGGAATGTGTCCATT
TTTTCTCTATAAGGGGGATAAATGTGTAACCTTCCTCTTACATAT



Found at i:303851 original size:19 final size:19

Alignment explanation


    Indices: 303827--303864  Score: 76
    Period size: 19  Copynumber: 2.0  Consensus size: 19

     303817 GGCCTTAGGC

                               
     303827 GTTCACTTCCTTGTCTAAA
          1 GTTCACTTCCTTGTCTAAA

                               
     303846 GTTCACTTCCTTGTCTAAA
          1 GTTCACTTCCTTGTCTAAA

     303865 AAAAGGTTCT


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  19   19  1.00

ACGTcount: A:0.21, C:0.26, G:0.11, T:0.42


Consensus pattern (19 bp):   
GTTCACTTCCTTGTCTAAA

Left flanking sequence: Indices 303327 -- 303826
ATTCTTTCCATCCACCATCGCCATCGAGCCCTGGCTGTAGAGTTTCTAATCGCAATGGGTTTCTG
TTTTATTTGGATTTTCCATTCGCTTCGCTCAACCCTGATCTGGATAGATAGCTCGGCTTCTATTA
GCTGATAATGGATGTTTTCAAGGAAAGATTTCGCTATACAACAACAATGAACTCACTTCTGATCA
AATTGGATGAATCGGTAATCTTTCTCTGTCTTGTGAGAGAGAGGCACTTGCTGTATTGAGAGCGG
GTGGGTGAAATACATTAAGCGAAATCGGTTGTTATGTTTTTGAAAAGAGGAGCTTTTTCACAAAG
CGGGTAAGTCCGCAAGTGCGCAAGCCCCAGTGAACAAGTAGAATATATATAAGGCACATGAGGCG
CGCAGCGGTCAGAAAAGTATGCATGGTCGTCCTACACCTGAAAATAAAGCCTTCGATAGTGGTTA
GAGGCCGCTCAGGGTCCCATCTTCTATTTTGAAGAGGCCTTAGGC


Right flanking sequence: Indices 303865 -- 304364
AAAAGGTTCTATAAGGGCCTCTCCACAAGCAGAAAAAAGACGAGTTCCAGTAGTCTCAGCTCTAT
TTTTGTTTCATCCAACGCAGCCAGCAAATGGTCCGCTCTCTCTTCTCTATCGAAGGTTGAGTCTT
TTATGCATCGAACGTCACTAGCTGTTAAAGGCTGTTCTCGAGTTGAAATGTAGGAAATCTTCTTC
AGTCTACAATCAGGCATGCTACATTGTATAGATTTACTATTGAACTACGCACCGGAACTTTCAAT
TATAGTTTCTTCCAGTGAGTAACTACTGTGTAGAAAAAAAAATGCCATACCACCTTAGCGGCCTA
TATACTATTTTAGTAAAAGTAAGTTGGGGTGATCGACAGGCTTTTCTCCGTTTTAAGACCTTGAC
CAATAAATATTTATACAGAGGGCTTTATCCCGGCGCAGTTTATATAAATCGGATATGGCGGTTCA
GATTCTCTTATCTTCTCACCCGAACGTAAATGGGCTTGGGTTTGG



Found at i:339007 original size:14 final size:14

Alignment explanation


    Indices: 338953--339008  Score: 53
    Period size: 14  Copynumber: 3.9  Consensus size: 14

     338943 ACCCAAATTG

                      *   
     338953 CTACAGTACCAC-C
          1 CTACAGTACCGCGC

                              
     338966 GCTACAGTAATCCGCTG-
          1 -CTACAGT-A-CCGC-GC

                          
     338983 CTACAGTACCGCGC
          1 CTACAGTACCGCGC

                        
     338997 CTACAGTACCGC
          1 CTACAGTACCGC

     339009 TCAATTTACC


Statistics
Matches: 36,  Mismatches: 1, Indels: 10
        0.77            0.02        0.21

Matches are distributed among these distances:
  13    1  0.03
  14   23  0.64
  15    2  0.06
  16   10  0.28

ACGTcount: A:0.25, C:0.39, G:0.18, T:0.18


Consensus pattern (14 bp):   
CTACAGTACCGCGC

Left flanking sequence: Indices 338453 -- 338952
AACTAGTTTTTTCATTCATATAGTTATTCACCCCAATCAGGGAAATCCTTAAATACACCTTCATT
ATGTAACAAAGGCAATCTTGGTATGGGATCATGTCGACGAAAAACATATCTATTTGGAATAGAGA
CAATGCTGGGTTCGTTACTCGTTCTACAAATGTTTGATGTACTCTTGACCGTGGGTCCGAGAAGT
TATCATAAAACAACGCGTCAAGAATACCATAACGAGTCAAACCGTTAGTAGCACATCAAGAGACA
TAAGCCTTGAATCCCTGTAGGGGAAAAAGGAAGGAGACTCTCGTTACTCTTTCTGTCCTCTTCAT
CATTCTCGTGAGTAGTTGTAGTTTCAGTTTCACAGATAATAGTTTCCAGAGCATCCAGCATAGCT
CTCTGGAGCAATACTTTGATGTCGCTAGTTTCTTATCACTATCTCCAGAACCTTCTCCATCTACT
CCTCTTGTTATCTTATCATCTTCTACTTCTTCAAAACCCAAATTG


Right flanking sequence: Indices 339009 -- 339508
TCAATTTACCCGGATAAATCTCGGGTTTGCTGTTATGGTTGTAATGGACGACTCGAGTACAACCC
ATAGCCATTTCAACGTGTAAGTTCGCTTTTTAATGTAAACCTCTCGAGATCTCAGTAATTCTCCT
TTTTCGTTGGTACTTTGATAGGGAAGAAAGCCGCGCTTCATCCTGGGAAAATACTTAATTATCTA
TTACATAGAAGAGGTGAGAAAGGCAAAGCCTATATGGTATGAGTTTATGATCAATCTCTTTTTGC
CCCGGGAGTAATTTCTCTATTTAAGTAGAGCGAGTCTATGATGTATCTTGTGGTGGCTCGCTCCG
GGCCAACCACCCTAATTCGATAGAAAAAACGATCAGTTAGGATGGAAAAACTGACCAAACGACAC
CTAGCGAGGAGAGGAAGAAGTTCTGATGGGAAGGTTAAATCTCCAAATTGATGGAGGAGTTCGGG
TTTTTATCAGGTTTTAGGATGAACCCACAGAAGTCAAAGATCTGG



Found at i:353493 original size:27 final size:27

Alignment explanation


    Indices: 353455--353510  Score: 112
    Period size: 27  Copynumber: 2.1  Consensus size: 27

     353445 AAGAGACATT

                                       
     353455 GCTAGAGTCATCCATGAACTTATTTTA
          1 GCTAGAGTCATCCATGAACTTATTTTA

                                       
     353482 GCTAGAGTCATCCATGAACTTATTTTA
          1 GCTAGAGTCATCCATGAACTTATTTTA

              
     353509 GC
          1 GC

     353511 CGAGCCCTTC


Statistics
Matches: 29,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  27   29  1.00

ACGTcount: A:0.29, C:0.20, G:0.16, T:0.36


Consensus pattern (27 bp):   
GCTAGAGTCATCCATGAACTTATTTTA

Left flanking sequence: Indices 352955 -- 353454
GAAGGGGGTGGTCAGAGATTTGAAGGCGAGAGAGCAAACTTCCCTGTCCGGAACTAAAAAGAGGG
ACGAACCTAGTCAACTTGTTATGACTTCAAGGATACATGACTAAAAGCATGTCACGAAATAAAAA
GGTATAAGAACTCTCCCGAAGAAAGCCACATGGGCGGGCGACCTGTAAAGTCAAATTGATAGGCG
GACGATCAATAAACTACTTACTTTCATCTACTATCTACTATTCCTCTGGTCGCCCGCCGGGAACA
GCTATGGATGATGCTGAATCCTACACTTAATCGTAGTAGTTTGGTTCCTCGGCTTGGCGCTACAC
CATTATTTTGAATCAATGGACCCGTAACAAGTCTAGTTCAGGCAATCGGCTAGAGGCGCGAAGCG
ATCAGGCCTTCCATGGGACAGTGCACTCTTTCTCCCGATCTACTTACCACCCACTTCTACCCATA
GATTGGTGGGGTTCGCCTAAACCCTGTGCCTAACGAAGAGACATT


Right flanking sequence: Indices 353511 -- 354010
CGAGCCCTTCTTTCTGCAGCTATGAGGTAGAATTGAACAAGCCGTGCACTTGTCACTGATACTAT
CCCTCAGCAGGATAGCTTCCTTTGTAGAACAACCTTTATCTTTCGAGCTAGTACGTAGCTTAGCC
GGCTATTAGTCCTGCATTGGCAAAGAAAAGTGAGTGGGGGAGGTATGAAAGAAAGGGATGGGCCC
AAGAGACATGGGCATGTGGATGAAGTCGATTCGGCGGATCTTGTGTAACCAAGCCCATCAATGAT
CAGTCGGGCTTTGTGCCCACTTTAGGAAAGATCAGCAAGCTGGTGGGACTTCTAAACCCGGGACG
TATACTTCTTTCTTAGTACTGCGTATCACCCGCCCAGTCCGGGTCTAAGGCAATAAAAATAATAG
CTTTGCTTTTATCGCCCATGTATGTGCTTGTTCGTTCATACTAGAGTAGGGTAGTTAGGTCGAAG
CCCAGCCTTGTTTGGCTTACCCGAGGATACGTATTTCGTTTTCAC



Found at i:368875 original size:34 final size:34

Alignment explanation


    Indices: 368820--368885  Score: 80
    Period size: 34  Copynumber: 1.9  Consensus size: 34

     368810 AGAGTTCAGA

                          * *                 
     368820 GTGTCAATTAAGTATATTGTGTAAAGAGTGATCC
          1 GTGTCAATTAAGTAAAATGTGTAAAGAGTGATCC

                                   *  *      
     368854 GTGTCAATGT-AGTAAAATGTGTCAATAGTGAT
          1 GTGTCAAT-TAAGTAAAATGTGTAAAGAGTGAT

     368886 AAGAGTGAAA


Statistics
Matches: 27,  Mismatches: 4, Indels: 2
        0.82            0.12        0.06

Matches are distributed among these distances:
  34   26  0.96
  35    1  0.04

ACGTcount: A:0.33, C:0.08, G:0.24, T:0.35


Consensus pattern (34 bp):   
GTGTCAATTAAGTAAAATGTGTAAAGAGTGATCC

Left flanking sequence: Indices 368320 -- 368819
TTCAACTCCTTTCTCATCAAAGTATGTAAAAATAAGAAGTATGCAAAGAGGCACCATAAAGAAAT
GTGCAAGGTTCGTCATAAAGTGGAAGTAAACCATGTCGTGCCAAAAAGAGTAAACTAAAAACCGT
GGGAACACTGAAAGTGACGTGCATGGTCTGGTGCAAATGTTGAGTTGTCCCCATGTCGAGATTCA
ATTTGGATACTTTGTGGCAAGGAGTGAAATAAAAAAAGGAAAAGTACGGACATTCTATGGGAAAG
GATAAAAGATAAAGTCTCTGGATTTCTGCTCGAATTTGTGTTGACTAAGAAAGTAATCACTAGGT
TTATTGTTCCTAAAAGAGTAAGATTCAAAGTCGAGTCCCGAGTCAATATGCAAGAAGTAAGTGCT
AATAAAGCAGTTTCAAAAGAGTAAGATAGAGAGTAGTTGGAAGAGTAAATGTGTGATATAGTGTA
CTGAGTTCCGAGTGTCAATTCGTTGCAAAGTGTCAAGAGTTCAGA


Right flanking sequence: Indices 368886 -- 369385
AAGAGTGAAATCTGTAACTAATGAGAAGAATGCCAGGATAGAAATCGTTAACTATTGTAAAGAGT
GCTAAGAGTCCATTAGTGATCTTTCGAAGATGGGTTATCAAGAAGAAACCTGTTGGAAGTTCCTA
AGAAAGGTTCTACTTTGACGCCGCTAGTTGATCGATTACGTCGTACCCTCTCTATATTACACCCT
AACGCCGCAGATTACTATCCCCCACGGACTTTTCTTATCCAGTATCAGCCTAAGCTAACCACTTG
ACTCCCCGAGCCTACCTATCTATCCTACCCATGAGAATCTCAGAGGTCCTACTCCTCACTGGGTA
AAGGTTAAAGCATTTCTTAATTATTCAAAGGCTCCAAACATGGACAAAGACAGAATGCGCGTATA
TATGTATGATGCTTTTCTGCTCACAAATATTAAAGCCCATCTACCTTTGAATGGGCACCTCTACT
TGAAGCCAGTAAAAAGTTGTGCATGATGTTAGTGTCGACAAGATA



Found at i:404363 original size:31 final size:31

Alignment explanation


    Indices: 404328--404388  Score: 122
    Period size: 31  Copynumber: 2.0  Consensus size: 31

     404318 GTTCTGATAA

                                           
     404328 CCTTTGAACTCGTAACATTAGTAGTTACTCG
          1 CCTTTGAACTCGTAACATTAGTAGTTACTCG

                                          
     404359 CCTTTGAACTCGTAACATTAGTAGTTACTC
          1 CCTTTGAACTCGTAACATTAGTAGTTACTC

     404389 ACTGGGTACA


Statistics
Matches: 30,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  31   30  1.00

ACGTcount: A:0.26, C:0.23, G:0.15, T:0.36


Consensus pattern (31 bp):   
CCTTTGAACTCGTAACATTAGTAGTTACTCG

Left flanking sequence: Indices 403828 -- 404327
TACCTCCCTGGGTGGGTGGAATGCTAAATCCATAAATTCACAGAGGTAAATGAAATTCGTTAAAG
AAAAACTTGAATCAAAGCGATCCAAACCAAAGGAAAGTTAGTCCAGTCTTCTATACTCGAATCAA
TCTACTTACTAGAAGAAATCTCCTGGCTAAGAGTCAAATCTTCTTGATAGTAAAATCTATTGCAA
TCCTTATCTTTCGGGGAATTCCGTCAATCCTAGAAGCAAGGCAATGCAGACAAAATGGGGTTATA
CCTTTTAACACTCACCGATCCTGTCTCGTCCGGTCACAGCTCGTGCATCTTCTTATTATGACTAG
TCTCCTCCTTGCCATTCTCATCAACGTCGCTGCTTTCCTATTGGGGTTTTTACTCTGATCTCGAT
GGTGTTAGAGTGGCTTTTGCCTAAGCTGCCTTTCAAAGCTTTCTTGCAGGGTAAAGAGCTCGGGC
GGGATAGGGTAAGATGTTGAAGACTTCTTCTCTTTGTTCTGATAA


Right flanking sequence: Indices 404389 -- 404888
ACTGGGTACATAGAATTTCTTGTTAACTGCTTCCTTCTCTTGTCGGGGTAGTAAGCATACGTTTG
AAGACCGATTGGTCTGTCCATTCGCTCTAGGATTCACCCAAGAAGAAGGTGTGGACTACTTTGAA
ACATATAGCCCGGTTATTAGACCAACTACCATTCGGTTAGTTCTTTCTTTAGCTCTCTCTCTTGG
CTGGTCAATCAAACAACTAGATGTGCAAAATGCCTTCTTGCATGGGGATTTACAAGAAACGGTTT
ACATGTCCCAACCTCCGGGCTTTATTGATTCATTATACCCGACACATGTATGCCGTCCCAAGAAA
GCTATCTAGGGTTTAAAACAATCTCCACGAGCTTGGTTCTCTACCTTAAGCTCTGCTCTCATTTC
TTATGGCTTTCATCCTTCCAACTATGATCCATCTCTTTTTGTCTACCATCTTCATGGGTGCACAA
TTGTGGTTTTAGTCTATGTGGATGATATCATCATAACTAGCAATA



Found at i:412788 original size:32 final size:32

Alignment explanation


    Indices: 412747--412811  Score: 121
    Period size: 32  Copynumber: 2.0  Consensus size: 32

     412737 CCTTTCATTT

                                   *        
     412747 CAAAGCTTAGAATCAGATAATAAGGACAATTA
          1 CAAAGCTTAGAATCAGATAATAAAGACAATTA

                                            
     412779 CAAAGCTTAGAATCAGATAATAAAGACAATTA
          1 CAAAGCTTAGAATCAGATAATAAAGACAATTA

             
     412811 C
          1 C

     412812 CTGCGAAGGA


Statistics
Matches: 32,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  32   32  1.00

ACGTcount: A:0.51, C:0.14, G:0.14, T:0.22


Consensus pattern (32 bp):   
CAAAGCTTAGAATCAGATAATAAAGACAATTA

Left flanking sequence: Indices 412247 -- 412746
AAGGCGCACTTTTCTTATTCTAGTTAAACAACAATGCCTTCTTTCTGATATGAAGGAATTGGATG
CTCAATAGACTCCTCTACCTAATATGTAAATAGACGACGACTCCTTTACCGAATAAGGAGATTCC
ACCCTTTTCTATCTTCCTTCTCTTTCTAACTGTGTTTCTCTTAGGCTGCTATCATCCCTTTTTTT
AGCTTCTTCTCTGCATCCGCGTAAGGCCCTTCCTTTGTAGCAATTTGTGATTGGTAGGACCAAAG
TGAAGGTCTTCTTCCCGTAAAGTAGTCCCTTTGGATGATTCCATGCTTTATGTAGGCTTTGATAC
CCTTCCATTCTATAAGTAAGTCGGCAGCACCTACAGCACTTATACAGGTTTCGGACTTCTTTATT
AGAAAGAGTACCTAGAATTAGACAGATTGTACGGAGGAGAATCTAGAGAGTGAGCTGCTCAAGAA
GATAGGTGTCTACGGGAAATCTCGTATGGATCATACCTTTCATTT


Right flanking sequence: Indices 412812 -- 413311
CTGCGAAGGAAACCTTGCTTGCCTGCCCTCATTTATTTAGCAATATAAATTATATCTTATTACAT
AGGCAGACAGTTACTCACAGAGCCTGCCTAACTAAATACCTAGAGTAAGAAAGTACATTGAACAG
GTCAATGTATGCATAAAGACAGTAAAGACGAGTATAAATGCTAAAGAAGCATCAGTATGCCCAGT
TCAGTTTTGAAAAGTCAAAGCACCCTTAGTAAAAGTAGCCATTTCTTTAAGTAATAACTCATTCG
GGGAAATACAAGAATAAAATGCCTTGGAAAGACTGTATCCTTTCCTATTCCAGGCAAGCATGACA
GAAAATGACAGAAGCAAAGCAGGGCAGTGAGCCGCAGTCATGGCTTTGTGAAGGGGAGTTGGTAC
CTGAACTAAAGTCAAAACATATGATAAGCTATATTCCTTATCTGTTAACTGCATTTTTTTGCAAA
TGGTTTTCTCTGACTTGTTGTTTGAAACTTTATGCTTTTGTCTCT



Found at i:447651 original size:14 final size:15

Alignment explanation


    Indices: 447632--447660  Score: 51
    Period size: 15  Copynumber: 2.0  Consensus size: 15

     447622 TTACTTGATA

                           
     447632 TTTCAT-TTTTTTTT
          1 TTTCATATTTTTTTT

                           
     447646 TTTCATATTTTTTTT
          1 TTTCATATTTTTTTT

     447661 GTTAGCGCAT


Statistics
Matches: 14,  Mismatches: 0, Indels: 1
        0.93            0.00        0.07

Matches are distributed among these distances:
  14    6  0.43
  15    8  0.57

ACGTcount: A:0.10, C:0.07, G:0.00, T:0.83


Consensus pattern (15 bp):   
TTTCATATTTTTTTT

Left flanking sequence: Indices 447132 -- 447631
ATGCAAAAAAACACACTATTTACGAAAAACGAAGCAATGAAAATAATAAAAAGTGAAGGCGCGAA
GCAATGACCTGAAATACGCTCAAGAGCCTATCTAGCTTACTTTCCGTACCCGGAACGGATTGGAA
GGCATACCATACCAACATGCAAACAATAAGTAAAACTACTTATGTTGTCTACTTTCTCTAAACAA
CTCGTTTTGATACTTGATAGGATACAATGCCTTGCTTCTAAAGGTCAACTACTTGATTTGATACT
CGCTTTGCAGGCATAATATGTTATTGCTTTGATTCAGGTACGCTTTCCTACACTACTTGACCGGT
GAAAGGAACGGAAAAACAAAACTATAGTATATACGTGAAAAGCTCCACTATATAAGCAATTAAAG
TATTTCTCAACAAGAAAAATCCTTCAAGCACGCCTGCAAAGGAAAGCTTATAAGGAAAGACGGAG
CCAAGAGAAACTGCTTTATTTTGAGCATTCTCTCGTTACTTGATA


Right flanking sequence: Indices 447661 -- 448160
GTTAGCGCATCAGTTTGCTTTCTTCTACTTGACTTATTTATTCCTCACTTTCGTCAGCAGTTCAT
TAATCCTATTTCCGGCACGTTACTCACTCAAGCAATTCTTTAGTGCCTTTCTAATATAAATTCAA
AGTACTGCTCTCTATCCTGGCGCAAGCAAGCGTTCTGAATGCCGTGAATTTGCTTAATCAGACAA
AGCTGTTGAGGAATATAATATAAGAAAAAGAGGCCCTGCAATACTTTTTTTAGAAACCAGAGGCA
GATGCCTATGAGAAAGGAGTGGGTGGACATGAATCAAAAAAATAAGCTGTTTAATCAGAATAAAG
AAGGAATTCAAAAGATGCGTTAGTTTCCGCTTTCTTGTTCAGAGCGAGTTTTTCTTTCCTTATCT
ATTCTTATATAAGAGTATAGTAGCGGGAAAAGGAAGAGAGCTGTAAAGGCGTTCATCAAGAGAAT
AAATACCCTGCTAAAGTAAAAACCCTGCTGTTAGCAAGTTTCGGG



Found at i:450537 original size:17 final size:17

Alignment explanation


    Indices: 450511--450548  Score: 67
    Period size: 17  Copynumber: 2.2  Consensus size: 17

     450501 CCGAACTACC

                             
     450511 TATTCCTCTTGTATTCG
          1 TATTCCTCTTGTATTCG

                 *           
     450528 TATTCGTCTTGTATTCG
          1 TATTCCTCTTGTATTCG

                
     450545 TATT
          1 TATT

     450549 GTGAATTGCA


Statistics
Matches: 20,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  17   20  1.00

ACGTcount: A:0.13, C:0.18, G:0.13, T:0.55


Consensus pattern (17 bp):   
TATTCCTCTTGTATTCG

Left flanking sequence: Indices 450011 -- 450510
TCATTTCTTCCTTATCCTTGTCAAAGACCTTCCCGGACTGACCCATCGTGGTCGATACGTGACTA
TCGTGACGACTAGGACGGCTGTTTTTGGCCAGGCTGGACCCAATGATGCACAATCAGGCGATGTG
CTAAGCGATCGTATGTGATTCGGGATTTAAAATCTCCGGTGGGGTAGGATTTTCCCTGGAGTTTT
TTATGAGTTGGAGCGGGAGATATTTGAGAATTCGGCATTTCGTTATGATCGCACTGTCCACTGTC
ACCAAGTAAAAGGGAGCTAGGTTCTTCGACCGTCCATCACATCGTAGCAAGACCCTTCTCTATCC
ACCTATGTAGGCATGCTAATTCTTTAATACCAATTATTCCAATCCGGTGGCAGCTCGCTCTAAGG
TTCACCTCTTTTGGTTGACACTTTGAAAACCAAGGACCGTAAAAAACCTATTCCACATACTCGAC
TCGAGTTAATGATATGTTCAAAAGCAGAGGGTGAACCGAACTACC


Right flanking sequence: Indices 450549 -- 451048
GTGAATTGCATTGCTGTTCATTGTATTGCTTTCCTAAGCCCCGCAGGGAGATATAGAGCTATTCG
TATTGTACAGTGCTGTACATTGCATTGAACTAGAGCTGTTTCTCCTCCGCTTCTACGCGCCCCAG
GGACTTTCGTCGATTTTCCATCCCCTCTATCAATAGTAGAGCTGACACCTGGAACTAGAATCGAG
TTGCACTTCGCGCTTCTCCTCCAACTCTTGGTCTGGCGTCTACAACTAATACTTACTCCTCTTCC
CCCGAACTTTCCTCTATATCGTATGCGGGGACTTCCACTTCCGTTAATCCTATGGTTGGTTGCTA
CGCCCCTCAACATCCACTCTGCTTACAATTAAGAAAGGCACTGAACAAATCCAAATTAGCTAGCG
CACAGGTCGGTCTGTTTATTACAAATAAAAAGTGTAAAAAAGAGATAGAGTTCAATGAAGATGCT
GGTATGCCGGCCTTCCAGAGTGAAAGGTTTTAGTTGCCGCTTCGA



Found at i:457686 original size:17 final size:17

Alignment explanation


    Indices: 457664--457706  Score: 86
    Period size: 17  Copynumber: 2.5  Consensus size: 17

     457654 GCCACCCGGG

                             
     457664 TAAATATTTCTCAAAAA
          1 TAAATATTTCTCAAAAA

                             
     457681 TAAATATTTCTCAAAAA
          1 TAAATATTTCTCAAAAA

                     
     457698 TAAATATTT
          1 TAAATATTT

     457707 ATCCTTTCTG


Statistics
Matches: 26,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  17   26  1.00

ACGTcount: A:0.51, C:0.09, G:0.00, T:0.40


Consensus pattern (17 bp):   
TAAATATTTCTCAAAAA

Left flanking sequence: Indices 457164 -- 457663
CGAAGCTCCAGACCTCCTACTACTCCTAGAGTGTTCAAGCTCGCACGAGTCTTTCATCGTGGACT
GCTTGGGTGCTGCTTATTGGATCAGGTACTGGATCACAATCCCATCCCTTCGTTCGGCCCATTCC
TTTTTTTTTTTCACATATTTAAGTAAGTCTGATTTATCAACAAGTTGATGCTTGCCCCCGAAAAA
TCCACCTCAACTCTCTTTTGACTCTACCTACCTACTTATGTCAAAGCGAAGAAGGCAGCGGGAAA
GAGGTGAAAGATATAGGCGAAAGGCAAAAAGGTGGTGCGGTGTGCACCAGGCCACCCTTACCGCC
GCTAGAAGGTTTTGAAGTTACAGCTGAAAGAAGCAATTTGACTCCTCTAGCAAAACTCTTAAGAG
GGCCCAGATTGGAATCAGATTGGATTTTACTTCGAACATGCGCATCCATTAATGAAATTAATGTA
GAAACCCGTTCGTCCCGTGCAAGATAACAAAAGAAGCCACCCGGG


Right flanking sequence: Indices 457707 -- 458206
ATCCTTTCTGGAAAGTGGGCAACTGATTCCGTTAGGTAAGCTTTGAAAGTAGGTCTTGTCTTCTT
GAAGTTGAAAGGGCGGAAATGTCATACCCCGGACCCGAGCATACATATCCCGCCGACACAGCATA
GAGAACTTCTTCCCAGATCTGGCTTAATTAAGTGCTCATTGTTCTTCAAGTGCTGATTCCTCTGG
CAAATAGCATTCACTGCCAAACAGAAAGATAAGCTACAGACAACTAAAGGCTACAGACAACTAAA
GAAAACAAATGAACAAATGAGAAAGCTAGTGCGTCGCAATAAGAAGTGAACTGATTAACGAGAAG
GTGCTGCTTCTGTAGTGCTCATAGCTTCTTTCAAGCAAGTGCTTCTTGTTTCAAAGCGTATTTCA
CTACGTTCACTGAATTGCTTATTTGTATTATTGTTAGTAGTGAACAAATGAACAAGCAAAAGCAG
ATCATTAAAAGAAAGCAAGTGCGCGTATTTCCCTGAAAAGTCAAA



Found at i:457956 original size:17 final size:17

Alignment explanation


    Indices: 457934--457967  Score: 68
    Period size: 17  Copynumber: 2.0  Consensus size: 17

     457924 AGAAAGATAA

                             
     457934 GCTACAGACAACTAAAG
          1 GCTACAGACAACTAAAG

                             
     457951 GCTACAGACAACTAAAG
          1 GCTACAGACAACTAAAG

     457968 AAAACAAATG


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  17   17  1.00

ACGTcount: A:0.47, C:0.24, G:0.18, T:0.12


Consensus pattern (17 bp):   
GCTACAGACAACTAAAG

Left flanking sequence: Indices 457434 -- 457933
ATATAGGCGAAAGGCAAAAAGGTGGTGCGGTGTGCACCAGGCCACCCTTACCGCCGCTAGAAGGT
TTTGAAGTTACAGCTGAAAGAAGCAATTTGACTCCTCTAGCAAAACTCTTAAGAGGGCCCAGATT
GGAATCAGATTGGATTTTACTTCGAACATGCGCATCCATTAATGAAATTAATGTAGAAACCCGTT
CGTCCCGTGCAAGATAACAAAAGAAGCCACCCGGGTAAATATTTCTCAAAAATAAATATTTCTCA
AAAATAAATATTTATCCTTTCTGGAAAGTGGGCAACTGATTCCGTTAGGTAAGCTTTGAAAGTAG
GTCTTGTCTTCTTGAAGTTGAAAGGGCGGAAATGTCATACCCCGGACCCGAGCATACATATCCCG
CCGACACAGCATAGAGAACTTCTTCCCAGATCTGGCTTAATTAAGTGCTCATTGTTCTTCAAGTG
CTGATTCCTCTGGCAAATAGCATTCACTGCCAAACAGAAAGATAA


Right flanking sequence: Indices 457968 -- 458467
AAAACAAATGAACAAATGAGAAAGCTAGTGCGTCGCAATAAGAAGTGAACTGATTAACGAGAAGG
TGCTGCTTCTGTAGTGCTCATAGCTTCTTTCAAGCAAGTGCTTCTTGTTTCAAAGCGTATTTCAC
TACGTTCACTGAATTGCTTATTTGTATTATTGTTAGTAGTGAACAAATGAACAAGCAAAAGCAGA
TCATTAAAAGAAAGCAAGTGCGCGTATTTCCCTGAAAAGTCAAAGCTGCTTATTGTGGAAAAGCA
AGCGGTATTTCTGGAAAGCACGAACACCACTCCTTCGCATTGGAAACGGTCTCTCTTTCATATTA
GAGTGTAACAGCTTCATCTACTGGACTATTTGTTGAAAAAGCAAGGGCGCGCAAAGAAAAAGGTG
GAAAGCTTCTCATATGTCGCTATTCCTATTATAACGCCATATTCAAACGTGTGTGGAATAGCATT
AGAACGTTGTAGAATCATTTCAACGCTAGATGATGATTGGGTTGA



Found at i:474745 original size:48 final size:48

Alignment explanation


    Indices: 474681--474783  Score: 143
    Period size: 48  Copynumber: 2.1  Consensus size: 48

     474671 AGAAAGAGGC

                                     *        *          *  
     474681 TGAGTAACTGGCACTGACTGATCAATTGGTATTGTCTCAGCAGAAGTT
          1 TGAGTAACTGGCACTGACTGATCAACTGGTATTGACTCAGCAGAAATT

                  *    *            *          *            
     474729 TGAGTAGCTGGGACTGACTGATCAGCTGGTATTGAGTCAGCAGAAATT
          1 TGAGTAACTGGCACTGACTGATCAACTGGTATTGACTCAGCAGAAATT

                   
     474777 TGAGTAA
          1 TGAGTAA

     474784 TTTGCACTAA


Statistics
Matches: 47,  Mismatches: 8, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  48   47  1.00

ACGTcount: A:0.28, C:0.15, G:0.28, T:0.29


Consensus pattern (48 bp):   
TGAGTAACTGGCACTGACTGATCAACTGGTATTGACTCAGCAGAAATT

Left flanking sequence: Indices 474181 -- 474680
GTTGTAGGTCTGACAACTGGACTGAAGGTGTCAAAAAAGTAAACTCCCTCCTCTTGATTGAATCC
CTTAGCTACTAAGCGTGCGTTGTATCTTTCAATGGAGCCATCTGGTTTCTGTTTGATTTTATAGA
CCCATTTACAACCAATGATCTTATGGTCTGATGGAGGAGGCACTAACCTCCATGTGTTGTTGTTG
GCAAGGGCATTAATTTCTGCTGCCATGGCCTTCCTCCAATCCTCAGATTTAGCAGCTTGAGTAAA
GCAAGTGGGCTCAGAAGTGATTGTTGTTGTATAGGCTACATAGTCTCAGAGAACAAGCGATTGCG
CCTGGTTTTATCTTTATATCTGGTAATCATTGCATGAGAAGAGGCAGAAGGATGAACATTTGTTT
GAGGTTGTGCTGCAGCATGAGGAGTAGGAGTGAGCTGTTGAGGAGCTGGCACTGACTGCTCAGTT
GTAGCAGGTTGAGCAGCTTGTATTATCTGATGAACAGAAAGAGGC


Right flanking sequence: Indices 474784 -- 475283
TTTGCACTAACTGGTCAGCTGGAGCAGGCTGAGCAGCACTGGAAGTGTCCAATAGCAGCAAGGAG
GAAGGTGGAACATAATCAGAAGAGACAGAAGAAGAAGATTTGACATGTTCTTTGAATGGAAACAC
AGTTTCATCAAAGCAAACATTCCTGGATACTAGTAACTTGCCAGTTGGTATGTGAAAACATCTAT
ACCCCTTTTTAGAATTTGCATAGCCCATGAATACACAAGGCATGGACCTGAGTTCAAGTTTATGT
GTATTGAGTGGTCTGGTGTGAGGAAAGCAAAGACAACCAATCACACGAAGGGCAGAATAGTCAGG
AGTTTTATTGAAAAGAGTGGTATAAGGTATGGATGTTGTAGATGAAGATGGCAATCTATTTATGA
GGTATACAATACTAGAGAATACTTCATCCAAAAATTCTGTTGGTATTGCTGCTTTGGACATTGTT
GATAAAGCCAATTCGACAATGTGTCGATGCTTTCTCTCAGATATT



Found at i:474802 original size:48 final size:48

Alignment explanation


    Indices: 474681--474805  Score: 142
    Period size: 48  Copynumber: 2.6  Consensus size: 48

     474671 AGAAAGAGGC

                           *        **        *          *  
     474681 TGAGTAACTGGCACTGACTGATCAATTGGTATTGTCTCAGCAGAAGTT
          1 TGAGTAACTGGCACTAACTGATCAGCTGGTATTGACTCAGCAGAAATT

                  *    *   *                   *            
     474729 TGAGTAGCTGGGACTGACTGATCAGCTGGTATTGAGTCAGCAGAAATT
          1 TGAGTAACTGGCACTAACTGATCAGCTGGTATTGACTCAGCAGAAATT

                   * *          *        
     474777 TGAGTAATTTGCACTAACTGGTCAGCTGG
          1 TGAGTAACTGGCACTAACTGATCAGCTGG

     474806 AGCAGGCTGA


Statistics
Matches: 64,  Mismatches: 13, Indels: 0
        0.83            0.17        0.00

Matches are distributed among these distances:
  48   64  1.00

ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30


Consensus pattern (48 bp):   
TGAGTAACTGGCACTAACTGATCAGCTGGTATTGACTCAGCAGAAATT

Left flanking sequence: Indices 474181 -- 474680
GTTGTAGGTCTGACAACTGGACTGAAGGTGTCAAAAAAGTAAACTCCCTCCTCTTGATTGAATCC
CTTAGCTACTAAGCGTGCGTTGTATCTTTCAATGGAGCCATCTGGTTTCTGTTTGATTTTATAGA
CCCATTTACAACCAATGATCTTATGGTCTGATGGAGGAGGCACTAACCTCCATGTGTTGTTGTTG
GCAAGGGCATTAATTTCTGCTGCCATGGCCTTCCTCCAATCCTCAGATTTAGCAGCTTGAGTAAA
GCAAGTGGGCTCAGAAGTGATTGTTGTTGTATAGGCTACATAGTCTCAGAGAACAAGCGATTGCG
CCTGGTTTTATCTTTATATCTGGTAATCATTGCATGAGAAGAGGCAGAAGGATGAACATTTGTTT
GAGGTTGTGCTGCAGCATGAGGAGTAGGAGTGAGCTGTTGAGGAGCTGGCACTGACTGCTCAGTT
GTAGCAGGTTGAGCAGCTTGTATTATCTGATGAACAGAAAGAGGC


Right flanking sequence: Indices 474806 -- 475305
AGCAGGCTGAGCAGCACTGGAAGTGTCCAATAGCAGCAAGGAGGAAGGTGGAACATAATCAGAAG
AGACAGAAGAAGAAGATTTGACATGTTCTTTGAATGGAAACACAGTTTCATCAAAGCAAACATTC
CTGGATACTAGTAACTTGCCAGTTGGTATGTGAAAACATCTATACCCCTTTTTAGAATTTGCATA
GCCCATGAATACACAAGGCATGGACCTGAGTTCAAGTTTATGTGTATTGAGTGGTCTGGTGTGAG
GAAAGCAAAGACAACCAATCACACGAAGGGCAGAATAGTCAGGAGTTTTATTGAAAAGAGTGGTA
TAAGGTATGGATGTTGTAGATGAAGATGGCAATCTATTTATGAGGTATACAATACTAGAGAATAC
TTCATCCAAAAATTCTGTTGGTATTGCTGCTTTGGACATTGTTGATAAAGCCAATTCGACAATGT
GTCGATGCTTTCTCTCAGATATTCCATTTTTTTGTTGGGTATATG



Found at i:501507 original size:22 final size:22

Alignment explanation


    Indices: 501482--501523  Score: 84
    Period size: 22  Copynumber: 1.9  Consensus size: 22

     501472 CGCTTCGCGC

                                  
     501482 CTTTGCTTAGCTTGAATAAGCG
          1 CTTTGCTTAGCTTGAATAAGCG

                                
     501504 CTTTGCTTAGCTTGAATAAG
          1 CTTTGCTTAGCTTGAATAAG

     501524 TAATTCACTT


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  22   20  1.00

ACGTcount: A:0.24, C:0.17, G:0.21, T:0.38


Consensus pattern (22 bp):   
CTTTGCTTAGCTTGAATAAGCG

Left flanking sequence: Indices 500982 -- 501481
TTGGCCTTCTCTGGGAGTGCTTCCCCAGTGTGAGTTACTGTGATAGCTGTGGGTGGGCATCCGAG
AATCGTTTTTTTCCTTGTGGAAAAGCACATTGAGCTCAGTTGCTAGGGCTAATTGCTTTAAGGAT
TGATCCCAGTGATACACTACGGCATGTGTCCTTTGTTCGCAACATTATACGTTCCTCGCAGGGCG
TAGCTTGTTTGTGAGTATAGGCCCTCATTCAAGTCCAGGAATAAGACTAGAAGAAAGAGAGGCAT
CTGGGTTGTAGGGAAACTACAAGTAAAGTAGCTCCTGCAGCCTTGTAGAAGTGTAGGTAAAGTAA
TAGAGCTCGGTTTTTCGAAAGAGACATCTGTATAGATAGGGCTAGGTGCTTAAGGGAACTTGGTA
AGGAAGGGTAAACTGGATAGCCGGCATAGGTAAGTAAGGTAGTTGTTATCACCACCGGATACCAG
GCAAAGAAAGCATTTAATATACGTTTTAATAAACACGCTTCGCGC


Right flanking sequence: Indices 501524 -- 502023
TAATTCACTTAGGAGTTTGACCTTAAACAACAGGGGAGGATCCTTTTTCTAGGACTGAGAGTGGC
AGGGGATATGCTTACACCACGCACTGTCCTATTCTTCACGAGAGACCAGATAGGCCTTCATGTGA
TTTTCAGGGCCTTTTTATGAGCCCAGTTGGTCGTAGTACTTTTTCTTCTGACTTCTATCTGTTAG
GTGTTGATATGATGGAGGGTCAGGGTTCTCCTGGGGTTCCTGGTCCGTTGAGGGTTCAGGGAGAT
TTGGAGTGGAGTCCTGGTCAGATTGAGTGGACCTGGTATGTTTTGTGCCGTCTTGGAGATAGGTT
GGGCAGAGTGCACTTGTTTGGAGGAGTTACTTTGGCACTCTTTGAGTTTTCTTGGGGTTCCAACC
TACTCAAGGCGATGACGACCCATTGGGACTATGTGCACAACACGTTTGTTTTGGAGGACCGTTGT
GCCACAGTCGATCTTCAGCAGATATCCCGTTTGTTGGGTGTCTCT



Found at i:505209 original size:22 final size:22

Alignment explanation


    Indices: 505181--505223  Score: 68
    Period size: 22  Copynumber: 2.0  Consensus size: 22

     505171 TGCTTGCTAT

                                  
     505181 CCGCTACACAGGCATATGAAAC
          1 CCGCTACACAGGCATATGAAAC

                        **       
     505203 CCGCTACACAGGGGTATGAAA
          1 CCGCTACACAGGCATATGAAA

     505224 TTCCGTGCCG


Statistics
Matches: 19,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  22   19  1.00

ACGTcount: A:0.35, C:0.28, G:0.23, T:0.14


Consensus pattern (22 bp):   
CCGCTACACAGGCATATGAAAC

Left flanking sequence: Indices 504681 -- 505180
GATTATTATGAACGGTAGTATGGGGTTGGTGATATGTATTGCTTAAATTACTAGGGTATCTGATT
TCAGGTAACTATGGAAGAAAGAAACAGAACTTAAAAATGAGATAGATAGACTGGACTCGGAAATT
GTGAAGGCGCAGCGGAATCTTTACATGGCCCTAAAAGGGATAAGTTTGATTTCTGTCTGCAACAA
TGTAGATGCACATGTTCTATTTATTGTAATTCCTGTTAAGAGGAAGAAAAAGGAAAAAGAACTCT
TAGACCCGCATCCCAGCCCCTTCAACCCCCAGGATTTTCATTCTATTTTCCAAGCCAAGCCGCCC
GGTTATTAAATCTATGCGAAAAAAAATGCCCGTATACACTACCTTCCTTGATAAAACCTGAATTT
ACTAGAAAACAAAACTAGAGCCGTTCACTAAACGAACATTTGACATATGTGCTAGAAACGACTCA
ATCCATTGCACAAGTATGCTATTTAAATAAGTCCATGCTTGCTAT


Right flanking sequence: Indices 505224 -- 505723
TTCCGTGCCGTTTGATGAAAAGAAAAGAAAGTGCCCCCCCTTTTTAGCCAACATTATCAACTCCA
TTTTGCACTTTGAATTGGTCAAAGCCAAAAAGATGATGAATATTTGGAGATAAGAAAGATAGGCG
GACGACTTTCCCATAAGGTCGTATGTTTACGTGAGCAGTAAGCAGCGGATCTCCCCCTTTTTTGG
GGGGAAAGCAGGTGGCCCTTCCCTTTTGGCGTCTTCATTCTGTCGACGGGACGAAAAAGCCTTCT
TCGTTCGGTTGGTCAAAGTGCTTTTCGTTTACCAGCGCGTAGGTAGTCAAAGTTCCTATGACCGA
GTCTTTCTGGCCCCTGTGAACATAATTTCTTAATGTATTAAAGAGGGCCTCTCTAACCGGTGAAA
AAAAAAGTGGTAGGTTTCCACTAACGGCTATTCCTGGCTCGGCTCCGATAACGCAATTCCGGGAG
GAGTCGGTAGTAGGGCACTGGATCCCTTCGGACCTGGAGAAGGTG



Found at i:544005 original size:15 final size:15

Alignment explanation


    Indices: 543985--544014  Score: 51
    Period size: 15  Copynumber: 2.0  Consensus size: 15

     543975 CTCTCTTTTG

                           
     543985 AGTAGTCTATCTAGT
          1 AGTAGTCTATCTAGT

                      *    
     544000 AGTAGTCTATTTAGT
          1 AGTAGTCTATCTAGT

     544015 GAATAGATAT


Statistics
Matches: 14,  Mismatches: 1, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  15   14  1.00

ACGTcount: A:0.27, C:0.10, G:0.20, T:0.43


Consensus pattern (15 bp):   
AGTAGTCTATCTAGT

Left flanking sequence: Indices 543485 -- 543984
CTCTTCAGTGTTCTACAACGGCTACTGGGACGGACATCAAGCCCCGAGACAACAGACATCTCTCT
TCAGGCAGAAAATGAATGGAACCGTCTCTCTCAAATTCAACAACTGGCACCACCGTTTGCTGATT
GTTTGGACTCCATTGCTTGGCGCTGGAACAATCCAAAATGCTTCACAACCTTATCAGCATACCCT
GCCGGCACCACTCTACCAAGCATTCCTACTTATATTAGGGCAATTCATTTGGAAGATAAAAGCTA
CTACAAGAGTGCTCATTTTATCCTTTATCCCTAAGTGGTGTTTCGGGTAAAAGGCATGGAGTACG
GGGGTGATTGTCTTCCTTCATTTATAGCGAGGTTTGCTTACTGTTCTTGTAGTGAATTGATGTTA
CGAATGGATAAACGAGTTTATTTTCCTCGTGTAGTGACATACCGAAAGTAATATTGCTAGCTGTA
GTAGTAAATAGCAGTAGTTCCACTCATTTCAGCAACTCTCTTTTG


Right flanking sequence: Indices 544015 -- 544514
GAATAGATATGTTGATATTGGAGCTGGTTGAACATATATATGGATATGGGATTTTCCACTATATG
GAAATATTTAATTGATAAACTATATAAAATAAGTTACTAATGCTTATAGTGGAACGATTGAATTG
ATACACGAACCTATAAAAAGAAAAGGGCGAATCCAGTCGAGACTGCTGGTTCAAATCAATAAACA
AAGCAGGACAATAGCGAGCAAAACGGAAAGTCTGTAGAGGAGGCCAGTCCAAATGAGTTATGGCA
CTTAAGGTATGGACACCTTAATGTGAATGGATTGAAGTTGCTTAATCAAAAGAAGATGGTAATTG
GTTTACCAGACATAGATGACATCGGGTTATGTGAGGGTGGTGTTTATGGTAAGCAATCCAAGCTG
CCATTTCCTAAAGATCCGGCAATGCGTGAAAAAAAAGGTGCTTGAGTTGGTGCACACTGATTTAT
GCGGGCGAATGGAGGTTGAGTCAATGGGAGGAAGCAAGTATTTCA



Found at i:550393 original size:16 final size:16

Alignment explanation


    Indices: 550372--550405  Score: 50
    Period size: 16  Copynumber: 2.1  Consensus size: 16

     550362 CTCATTCATT

                    *       
     550372 ATGTATGACAGCATGG
          1 ATGTATGAAAGCATGG

                        *   
     550388 ATGTATGAAAGCTTGG
          1 ATGTATGAAAGCATGG

              
     550404 AT
          1 AT

     550406 TGCTCACCGA


Statistics
Matches: 16,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  16   16  1.00

ACGTcount: A:0.32, C:0.09, G:0.29, T:0.29


Consensus pattern (16 bp):   
ATGTATGAAAGCATGG

Left flanking sequence: Indices 549872 -- 550371
TTGCATCGATGGGACGAAGGAGAATGGATAGGAATATGAAAGCTATCCCAATTCACGTATTAATG
ATAGGAAATCCGTTCTCAGGTTGTAGAGCTTACTTTCTAAGAAGAAAAAGGTATTTCGCACCTTG
CCCAGCCAGCATTATATAGATGTGGAGATTTTACCTTTTTCCCCTTTCAGTGTTAAATAGAACTT
CAAAAAAGCTAGGAAGAAAAAGGATAACAGATAGAAATGATACTAGAATCGAACCTTCAAAGTAC
CTGATCGGACCGGTACCTGCTCGTTATGCTACTGGACCTTCGCAGCATCTAAGTTTTCTGTTTAT
TTCATTGGTTTTTGTCGTAAATAGTGTCTTTCTGGTAGTGTATTATAGATATAAAAAAGGGAAGG
AGATTCGAAGTTTTTTTGCTAATTGTCGTTGGGATTTCGGAGCAGTAGGGCGTTTGTTTCAATAC
GCAGGTACGAAGCTATACCCAGGCCAACGGGGCTCCTCATTCATT


Right flanking sequence: Indices 550406 -- 550905
TGCTCACCGACATATCTTGTCTTGCGAATTTCCATAATTGGAGCTTTTCTTTTTCTCATTTCAAA
GGGAGGGATTTCTTTATTTCGTTCTCCTGCGATGTTTGTTTTTTCTAAGACGCCTGGATGCATAG
TAAAGTGCCAGCGGGATAAGTCGAAATGTGGAGAGGACGCCACCCACCACTTCATCTGTGCACGA
GCTTTTACCCGTGTATCCTGAGATGGTGTTAGTGTTCAGTCGAGCTATGATAGCTTTTCCTTAGT
CACCGATGTCTGAATTCAAGATCTAGTATTCCCCGCCCAAATGTGGGGTCCCGGTAAATAAGCCT
TACTTCATCTATCTTTAGAATACTTTCCCGGCAGAATCCGTGCCAGAACTCCATTTTATGCCATC
GGCACAAGTGCTACGGCTCACCTCATTTCTATACGAGATTTTACCTTATACGGTAACGAACGAGA
TGGATTATTTAAAAGATTTTCCACCAATGGCCCCTTCCTACTACC



Found at i:554076 original size:15 final size:15

Alignment explanation


    Indices: 554056--554085  Score: 60
    Period size: 15  Copynumber: 2.0  Consensus size: 15

     554046 TCCGTCCTAT

                           
     554056 CTATTCTTTCTCTTC
          1 CTATTCTTTCTCTTC

                           
     554071 CTATTCTTTCTCTTC
          1 CTATTCTTTCTCTTC

     554086 TCTTCGGGCG


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   15  1.00

ACGTcount: A:0.07, C:0.33, G:0.00, T:0.60


Consensus pattern (15 bp):   
CTATTCTTTCTCTTC

Left flanking sequence: Indices 553556 -- 554055
TCAGCTTGAGTGATAAGTTGATTCGAGGGGAGAACCCTTTGAAAGAAAACTGGACCAGGGAATGT
AGCGTAGTAGGAGATGAGCACGACCCTAACTATATGATGATATTACGCGCGGAAAAAGGATACTC
CACTCTAGGTAATATTCTTTCTTTCCTTAAAGGTTTCGGGCCTCCGCATAAACAGGACCGTAGCA
TGCATAAAAAGGAAATGATAAAGCAATCTATCTGGTCAACAGTACATCCTGCTATTCACGGTGCT
CAATGCGCCGCAGTAAGACAAGCCTCTTTCTGATTAAATGAAGTAGTAAAATGTGCCAGTGTTAA
TATCAAATATGAGCTCCAATATGCGTCCCACCACTTAACTTAAGAAAGAGTAGCTAGCAAGGCAA
AATCAACAACTAAAGAAAGAAAGCTGTTGTGGTATTTTCGTGTTTAGAATACGCACAGGTGAAAA
TTGCCTTTCCTATGATCCAATTCCAAAGTGCCAGGTCCGTCCTAT


Right flanking sequence: Indices 554086 -- 554585
TCTTCGGGCGAAAGAAGGAAAGCAATTTCATAAGTGAAGGCGTCCGCAGTGTTCTGCTTTTTAGC
ATTATCTGTAGCATTGTGCTTTTGTTTTGTAAATAGTGAGGCTATGAACTCAATCGTGGCCGGAG
GTGGTATAAAGATAAATGTAAAAGAAGGGTTAGCTAAAAGACCTTGTCTCAGGGGCCGGCCTACC
GTTCTTTCTTTCCCTATAAGGTCTCTCAGTTTCTCCTGTCTTCTATACTTCTTGCTAAAACCACA
TTTGAACAACGATCTCTTCCAATTCCCAGTTCACTTTGTCTTCGGGCTTTCATTCCTCAACTTCT
TCGTTCTCTTCATTCTTTTCTATCTCATTTGATCATAAATAGTGTCTGCTAACGCCCTTCGTTTT
TGGGAACATCAAGAGCTCCCCACCTAATCATGTTTGTTGGTTGGGAAGGAATTGGTATCTCATCA
TACCTACTAATTAATTTAGGGTTTAAACGAATTCAAGCAAATCAA



Found at i:571485 original size:26 final size:26

Alignment explanation


    Indices: 571456--571515  Score: 95
    Period size: 26  Copynumber: 2.3  Consensus size: 26

     571446 ACGTATCAGG

                                       
     571456 TAGGTAGGACTA-TTTTGCTTTATAGC
          1 TAGGTAGGAC-AGTTTTGCTTTATAGC

                    *                 
     571482 TAGGTAGGGCAGTTTTGCTTTATAGC
          1 TAGGTAGGACAGTTTTGCTTTATAGC

                    
     571508 TAGGTAGG
          1 TAGGTAGG

     571516 GTGTAATAAC


Statistics
Matches: 32,  Mismatches: 1, Indels: 2
        0.91            0.03        0.06

Matches are distributed among these distances:
  25    1  0.03
  26   31  0.97

ACGTcount: A:0.22, C:0.10, G:0.30, T:0.38


Consensus pattern (26 bp):   
TAGGTAGGACAGTTTTGCTTTATAGC

Left flanking sequence: Indices 570956 -- 571455
ATCTTTTAGCCTCAAGAGTATACTACTCTTTCAAAAAGGAAAGGCATTTTCGACTCGGGGACACC
CAATTTCTCTACAACATAAAATTACGCAACAGGAGGGGACAATATAAGATACTGAATAGGTGGCA
GGAGTGGAGTTAAGAAAAGCAAATCTAAGCAAAGTAATATTGTGCTTTTTCGTCTTTCATTTAAA
GCGCTTATGAACTGAACATTGCTTGCCTACTTACGATAGTGCTTGCCAGCAAGGTCAACTCAACT
TTCATTCGTCTACTTCACTCTTTTATAAAGTAGGCGGTAATACCTATCTATGAAAATAAGGGATG
TAATACCTATGACAAGGCGGCGGGGTTGCAATAGTTACCCACTAGGCAGCTAAGTAGTTCACGTA
GGAGAGCAATTATGGTTGTGCGGTTGATACTACTGGTGGAATAAAAAGGACGACAGGAAGGATAT
AAAAACAGTAGGCCTATCAGTAGCCAGGAGAGTAAACGTATCAGG


Right flanking sequence: Indices 571516 -- 572015
GTGTAATAACAAGTAGGCCCGACATAAATACAGTAGGCACACAGTAGCGAAACTGTAGGCGAGTA
AGTAAGCTAAGCTAGTATAAAAAGGACAGAGCGCGAAAGAGCTTAAATGACAGAGTGGGCAGAGC
ACCATAGAGCTATAGTAGAAAAAAAACCTGCCTAATAGAATAGTATGGTTATCCTGTCAGTAGGC
ATATCAGTAGCTATCGTAGAGAGTAGTAAAACTTAAGAAACTAAAGAGCGGGTATCTAATTAAGT
AAGTAGCAATCTCCCCGGTTCACAAGGTGTATGTAAATGCATTAGTCCTTCCCGAGATCTCTTCT
CTGTACATTGCTTCTTCATGTTCCTATTCAGTAAGCCCAGTAAAGAATTTATTATAATTAAGAAA
AAAAGGCTAGATAGATGGCTATTAGCTAACTAGGGTGGCTGGGGACTCCCTCTTTCTTCTGTTAT
ATCCGCTAATCGAAGTTCAAGTTTCTATTTTGTTAACTATGTAAG



Found at i:582425 original size:12 final size:12

Alignment explanation


    Indices: 582408--582432  Score: 50
    Period size: 12  Copynumber: 2.1  Consensus size: 12

     582398 ATATTATTAA

                        
     582408 ATACTAATAAAG
          1 ATACTAATAAAG

                        
     582420 ATACTAATAAAG
          1 ATACTAATAAAG

             
     582432 A
          1 A

     582433 ATTACTTTCC


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   13  1.00

ACGTcount: A:0.60, C:0.08, G:0.08, T:0.24


Consensus pattern (12 bp):   
ATACTAATAAAG

Left flanking sequence: Indices 581908 -- 582407
TTTTAAATAAGCCTGACCTACAACAAACATTAGTAAGCAGCTTCTTCTACGATCTTGACTTTCGC
CACACCCTCATCTTCTTCTGATGTACAAGGGCAATGGTCTCCCTTAGAAGTGCCAGCCAATAGAA
TGCAATATCGATGTGAAAGAGAAAAAGGCACGAAGTGTTGAATTAAGCCAACACTTTCCAACCAT
CCCTATAATATAATACAAATTTCTAGTTATTCCACGCACGCGCCTTCTTTTCAATAAATTAATCG
ATATGGACAAATAGAAAGTACCACCTCATTAGCAAGTCCGAAACCTGCTTATCTTACTAATGCTT
TCTTTTAATCTCTTTATCCCACCGGGCGCGGCCTCTAGTCTTGTTCCGAGTGGGTCTTTTCTCCT
TTGCATGTATATGGATCATATCTGACTTTCTTTTATGAAAAGGCCACTAAGGCGCGCAGCGAGAA
AGCATTCGGACGGCTAAAAGAACAAGAAGAAATGAATATTATTAA


Right flanking sequence: Indices 582433 -- 582932
ATTACTTTCCCTTTTTTACCAAAACTTTTTATTATTTCCACTACTTTACTTTACTAATTTATGAT
AGTAGATTCTGCTCCTCTCCTTCTGCATAGTAAGGTTATCATAATAGGAGATTTCATTAGGCTAG
TTATCTTTATCATAGAAGAGGTACCCAGGGATTTGCCAACTTCACACTGGCACCACCCTTGTAAA
GAGTCCCCTTGCTATATTGTGGATTCTTGATCATGCCACACACACGCCTTATTATCGACAAGACC
GTCTGTCACATTTAATATCGAAAAGCCTCAGTTTACAATGCAATATTTGCCCTTCATAAGCCATT
CTCCTGGGTCTTTTGGTAACGCACCAAAGAAATGCTCTTTCAACATAGAAAGGATTAGCCCCGGT
GGATAGCACAGATGATTTACAGTAGTCCCGATTGTCCATCTTACTCATCACCTATTTATTTTCCC
ACTTTACTTCCGGGCTTATGGCATTAAGCAAAGTAGATATATTTC



Found at i:609443 original size:15 final size:14

Alignment explanation


    Indices: 609425--609454  Score: 51
    Period size: 15  Copynumber: 2.1  Consensus size: 14

     609415 ACGGGTTAGC

                           
     609425 TCGAGTAGAGTGAGT
          1 TCGAGTAGAGT-AGT

                          
     609440 TCGAGTAGAGTAGT
          1 TCGAGTAGAGTAGT

             
     609454 T
          1 T

     609455 TATTAAATAA


Statistics
Matches: 15,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  14    4  0.27
  15   11  0.73

ACGTcount: A:0.27, C:0.07, G:0.37, T:0.30


Consensus pattern (14 bp):   
TCGAGTAGAGTAGT

Left flanking sequence: Indices 608925 -- 609424
ACTTTCATCTTCTTCTTAATAGAGTAGCAAACCCGGGATTTTGACATATGTAATCTATAATGCCA
CATATTTCATAGATAGTTATTATTTCACTGGCCCTTCTCTTGCTGGTGGGCCTTGCTGATTTAAT
TTAGAGGATGGCGGCTTTGGCTCTGCCTCTAGCTCTAATAAAGAAAGATTCTACCACTTATTCAT
TACCGGCACCTACTTCTAACTAACTAAGACTATTTAGGAGCAGTTTGTTTATAATGCAAGCAAGG
AGCAGAAAGACATGAAGGATGGAAGAATGCACCAATTTGACGTATACTTTACTCTACCTAATCGG
TCTTCATTCATCAACCCCAGAAGCTTATTCCTTCTTCTATAGGTCCTTGCATAGGTTGAGCGGAG
GATCTATTCGTTAGACTGCAGGGGGAGTCTATTTTTCCTTATTAGACAGGGTGAGTAAAGCAGTT
CCCGATTCCATATGAGAGTAGGGTTTTTCTTCGAGACGGGTTAGC


Right flanking sequence: Indices 609455 -- 609954
TATTAAATAAGAGAATAGTGTGAGTGAATTCCTATAAAAGAAAGGGGTAGTGACCTTTCATAGAA
GAGTAGTTCGTTCAATTCCTGAGAAGCAAAGCAATGCCTTTGTCCTTTCCCTTTCCCTTAGAAGA
GATCTCTGGAGTTCTGGCTTTGTATCCCTTTGCTTTGTATCCCTTCCGTAGAAGAGCTTTGAAGA
GAGAGCATAGAGGTAAAGAGAGCAGAGAGGGAAGCAATCTACCTTCATGAATCCAGAGCATTCCT
TATTGAGCCATAGACCATTGAGCCATAGACCTACCTTCTTTAATCAGAGCATAAAAGAAGGGGAA
GAAAGGAGTGGAAATGTAGAAAAAAATACTAATCCCTCCAGCCTGTAAGAGACCCTGTGTTGTAG
CACATTACAGTTCCTAAAGAGGCACAAGAGTTTGTAAAGAGCATTGATAAGAGTAGGAGGGTTGT
TTGAAGAGTAGAAGGGTTGTTTGTTATTCCTCTTTAACCCTTCAA



Found at i:609621 original size:15 final size:15

Alignment explanation


    Indices: 609601--609629  Score: 58
    Period size: 15  Copynumber: 1.9  Consensus size: 15

     609591 TGGAGTTCTG

                           
     609601 GCTTTGTATCCCTTT
          1 GCTTTGTATCCCTTT

                          
     609616 GCTTTGTATCCCTT
          1 GCTTTGTATCCCTT

     609630 CCGTAGAAGA


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   14  1.00

ACGTcount: A:0.07, C:0.28, G:0.14, T:0.52


Consensus pattern (15 bp):   
GCTTTGTATCCCTTT

Left flanking sequence: Indices 609101 -- 609600
GATTCTACCACTTATTCATTACCGGCACCTACTTCTAACTAACTAAGACTATTTAGGAGCAGTTT
GTTTATAATGCAAGCAAGGAGCAGAAAGACATGAAGGATGGAAGAATGCACCAATTTGACGTATA
CTTTACTCTACCTAATCGGTCTTCATTCATCAACCCCAGAAGCTTATTCCTTCTTCTATAGGTCC
TTGCATAGGTTGAGCGGAGGATCTATTCGTTAGACTGCAGGGGGAGTCTATTTTTCCTTATTAGA
CAGGGTGAGTAAAGCAGTTCCCGATTCCATATGAGAGTAGGGTTTTTCTTCGAGACGGGTTAGCT
CGAGTAGAGTGAGTTCGAGTAGAGTAGTTTATTAAATAAGAGAATAGTGTGAGTGAATTCCTATA
AAAGAAAGGGGTAGTGACCTTTCATAGAAGAGTAGTTCGTTCAATTCCTGAGAAGCAAAGCAATG
CCTTTGTCCTTTCCCTTTCCCTTAGAAGAGATCTCTGGAGTTCTG


Right flanking sequence: Indices 609630 -- 610129
CCGTAGAAGAGCTTTGAAGAGAGAGCATAGAGGTAAAGAGAGCAGAGAGGGAAGCAATCTACCTT
CATGAATCCAGAGCATTCCTTATTGAGCCATAGACCATTGAGCCATAGACCTACCTTCTTTAATC
AGAGCATAAAAGAAGGGGAAGAAAGGAGTGGAAATGTAGAAAAAAATACTAATCCCTCCAGCCTG
TAAGAGACCCTGTGTTGTAGCACATTACAGTTCCTAAAGAGGCACAAGAGTTTGTAAAGAGCATT
GATAAGAGTAGGAGGGTTGTTTGAAGAGTAGAAGGGTTGTTTGTTATTCCTCTTTAACCCTTCAA
GAACTCCGCCGCTTTACTTATCTTCTTTTGGCTCTAAGCCTTAGGTAGGGGATAAATCTGTCTTT
TATCTATCTTTTCAAACTATTCTTATTCTTATTTATGAGGTTAAACCTTATATGCGAAAGCAAGA
ATTGAACAGGCGCCAACAGCACTTGCAAGCTTCACTTCTTATGTC



Found at i:609736 original size:15 final size:15

Alignment explanation


    Indices: 609716--609745  Score: 60
    Period size: 15  Copynumber: 2.0  Consensus size: 15

     609706 AGCATTCCTT

                           
     609716 ATTGAGCCATAGACC
          1 ATTGAGCCATAGACC

                           
     609731 ATTGAGCCATAGACC
          1 ATTGAGCCATAGACC

     609746 TACCTTCTTT


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   15  1.00

ACGTcount: A:0.33, C:0.27, G:0.20, T:0.20


Consensus pattern (15 bp):   
ATTGAGCCATAGACC

Left flanking sequence: Indices 609216 -- 609715
CCAATTTGACGTATACTTTACTCTACCTAATCGGTCTTCATTCATCAACCCCAGAAGCTTATTCC
TTCTTCTATAGGTCCTTGCATAGGTTGAGCGGAGGATCTATTCGTTAGACTGCAGGGGGAGTCTA
TTTTTCCTTATTAGACAGGGTGAGTAAAGCAGTTCCCGATTCCATATGAGAGTAGGGTTTTTCTT
CGAGACGGGTTAGCTCGAGTAGAGTGAGTTCGAGTAGAGTAGTTTATTAAATAAGAGAATAGTGT
GAGTGAATTCCTATAAAAGAAAGGGGTAGTGACCTTTCATAGAAGAGTAGTTCGTTCAATTCCTG
AGAAGCAAAGCAATGCCTTTGTCCTTTCCCTTTCCCTTAGAAGAGATCTCTGGAGTTCTGGCTTT
GTATCCCTTTGCTTTGTATCCCTTCCGTAGAAGAGCTTTGAAGAGAGAGCATAGAGGTAAAGAGA
GCAGAGAGGGAAGCAATCTACCTTCATGAATCCAGAGCATTCCTT


Right flanking sequence: Indices 609746 -- 610245
TACCTTCTTTAATCAGAGCATAAAAGAAGGGGAAGAAAGGAGTGGAAATGTAGAAAAAAATACTA
ATCCCTCCAGCCTGTAAGAGACCCTGTGTTGTAGCACATTACAGTTCCTAAAGAGGCACAAGAGT
TTGTAAAGAGCATTGATAAGAGTAGGAGGGTTGTTTGAAGAGTAGAAGGGTTGTTTGTTATTCCT
CTTTAACCCTTCAAGAACTCCGCCGCTTTACTTATCTTCTTTTGGCTCTAAGCCTTAGGTAGGGG
ATAAATCTGTCTTTTATCTATCTTTTCAAACTATTCTTATTCTTATTTATGAGGTTAAACCTTAT
ATGCGAAAGCAAGAATTGAACAGGCGCCAACAGCACTTGCAAGCTTCACTTCTTATGTCAAGTCT
TATAGCTGGGGCGATGAAAACCATAGAAATGAGAGATCCGCTTTGCATTATACTACGGTACTTTA
AATCTTCTTTATCGCTTTCAGTCTTGGAACTGCTATGAAAATCTC



Found at i:609918 original size:20 final size:20

Alignment explanation


    Indices: 609893--609932  Score: 71
    Period size: 20  Copynumber: 2.0  Consensus size: 20

     609883 GAGCATTGAT

                    *           
     609893 AAGAGTAGGAGGGTTGTTTG
          1 AAGAGTAGAAGGGTTGTTTG

                                
     609913 AAGAGTAGAAGGGTTGTTTG
          1 AAGAGTAGAAGGGTTGTTTG

     609933 TTATTCCTCT


Statistics
Matches: 19,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  20   19  1.00

ACGTcount: A:0.28, C:0.00, G:0.42, T:0.30


Consensus pattern (20 bp):   
AAGAGTAGAAGGGTTGTTTG

Left flanking sequence: Indices 609393 -- 609892
GAGAGTAGGGTTTTTCTTCGAGACGGGTTAGCTCGAGTAGAGTGAGTTCGAGTAGAGTAGTTTAT
TAAATAAGAGAATAGTGTGAGTGAATTCCTATAAAAGAAAGGGGTAGTGACCTTTCATAGAAGAG
TAGTTCGTTCAATTCCTGAGAAGCAAAGCAATGCCTTTGTCCTTTCCCTTTCCCTTAGAAGAGAT
CTCTGGAGTTCTGGCTTTGTATCCCTTTGCTTTGTATCCCTTCCGTAGAAGAGCTTTGAAGAGAG
AGCATAGAGGTAAAGAGAGCAGAGAGGGAAGCAATCTACCTTCATGAATCCAGAGCATTCCTTAT
TGAGCCATAGACCATTGAGCCATAGACCTACCTTCTTTAATCAGAGCATAAAAGAAGGGGAAGAA
AGGAGTGGAAATGTAGAAAAAAATACTAATCCCTCCAGCCTGTAAGAGACCCTGTGTTGTAGCAC
ATTACAGTTCCTAAAGAGGCACAAGAGTTTGTAAAGAGCATTGAT


Right flanking sequence: Indices 609933 -- 610432
TTATTCCTCTTTAACCCTTCAAGAACTCCGCCGCTTTACTTATCTTCTTTTGGCTCTAAGCCTTA
GGTAGGGGATAAATCTGTCTTTTATCTATCTTTTCAAACTATTCTTATTCTTATTTATGAGGTTA
AACCTTATATGCGAAAGCAAGAATTGAACAGGCGCCAACAGCACTTGCAAGCTTCACTTCTTATG
TCAAGTCTTATAGCTGGGGCGATGAAAACCATAGAAATGAGAGATCCGCTTTGCATTATACTACG
GTACTTTAAATCTTCTTTATCGCTTTCAGTCTTGGAACTGCTATGAAAATCTCTATCTTCACTTC
AAACTACCTTCACTTCAAACTACTGGCTTACTTGAAATGTTACTTGTTACTTTCAATCTTATAAG
TGACTTTTCATGTAGGGTTCTACCGCTGAAACAGCAGAGCGTTTTTGGGAGAGATACACTACGGC
ACGTGTATCTCTACAAAGCGTAACATTGTTACTCACTGCCTACGA



Found at i:610270 original size:16 final size:16

Alignment explanation


    Indices: 610249--610280  Score: 64
    Period size: 16  Copynumber: 2.0  Consensus size: 16

     610239 AAATCTCTAT

                            
     610249 CTTCACTTCAAACTAC
          1 CTTCACTTCAAACTAC

                            
     610265 CTTCACTTCAAACTAC
          1 CTTCACTTCAAACTAC

     610281 TGGCTTACTT


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  16   16  1.00

ACGTcount: A:0.31, C:0.38, G:0.00, T:0.31


Consensus pattern (16 bp):   
CTTCACTTCAAACTAC

Left flanking sequence: Indices 609749 -- 610248
CTTCTTTAATCAGAGCATAAAAGAAGGGGAAGAAAGGAGTGGAAATGTAGAAAAAAATACTAATC
CCTCCAGCCTGTAAGAGACCCTGTGTTGTAGCACATTACAGTTCCTAAAGAGGCACAAGAGTTTG
TAAAGAGCATTGATAAGAGTAGGAGGGTTGTTTGAAGAGTAGAAGGGTTGTTTGTTATTCCTCTT
TAACCCTTCAAGAACTCCGCCGCTTTACTTATCTTCTTTTGGCTCTAAGCCTTAGGTAGGGGATA
AATCTGTCTTTTATCTATCTTTTCAAACTATTCTTATTCTTATTTATGAGGTTAAACCTTATATG
CGAAAGCAAGAATTGAACAGGCGCCAACAGCACTTGCAAGCTTCACTTCTTATGTCAAGTCTTAT
AGCTGGGGCGATGAAAACCATAGAAATGAGAGATCCGCTTTGCATTATACTACGGTACTTTAAAT
CTTCTTTATCGCTTTCAGTCTTGGAACTGCTATGAAAATCTCTAT


Right flanking sequence: Indices 610281 -- 610780
TGGCTTACTTGAAATGTTACTTGTTACTTTCAATCTTATAAGTGACTTTTCATGTAGGGTTCTAC
CGCTGAAACAGCAGAGCGTTTTTGGGAGAGATACACTACGGCACGTGTATCTCTACAAAGCGTAA
CATTGTTACTCACTGCCTACGAATCTGATAGCTGATACCTAGAAAGCCATTTCTACTTTTATTCT
TCTTGGTAATACGATCGAAACTAGCAAGCAATTCTACAAAGCAAAGGCAGTACGAAAAAGCTACT
CTCGAAACTACATAGCCAGCTTCTACTACTTTGATATCTTATTTGTGAGTTCCAGTCTTACTTTC
TACTTTATATCCTACTGGGTCAAACTCCTGATACGAAAGGGAAGTCTCTAAATCCCTAATAAAAG
TATGGAAGCGAGAACCGAGCTTAAGGCTTTGAATCTTAAATCTTCCTTTTAAGCAGCACTTCTGG
TATCCGCCTTTGACTCTTATAGCAGGGAAGCAACCTGCTAAGCAA



Found at i:628774 original size:16 final size:16

Alignment explanation


    Indices: 628753--628785  Score: 66
    Period size: 16  Copynumber: 2.1  Consensus size: 16

     628743 TTCGTTGGGG

                            
     628753 TTCAACAGATTTAGTA
          1 TTCAACAGATTTAGTA

                            
     628769 TTCAACAGATTTAGTA
          1 TTCAACAGATTTAGTA

             
     628785 T
          1 T

     628786 ATCTAACTGT


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  16   17  1.00

ACGTcount: A:0.36, C:0.12, G:0.12, T:0.39


Consensus pattern (16 bp):   
TTCAACAGATTTAGTA

Left flanking sequence: Indices 628253 -- 628752
TTGAGAGAATGCACGTAGCAATACTTGTGCAACAACATTCTGCGCCTGCATCTTTGCGCATCCCG
GGATTGAAACAAGGCCAGAGAGGTACCAGAATAGAAAAAATAATAATAAAAAGAGCGAGAGAAGT
CAACCGCACTAAAATACCAAACTTCCAATATAGCAATCCTGTTTCATGAAGAAACAGATAACACC
TTTCACATTATGTCCGATAAAGGGCAATATATGAAAATATACCTGATATACCCTGCCAGCCTTTC
AAGAAAGAATAAAAGAGAGTCCTAAACGCTGCCGCCTTTCAATCTGAGTTAATCCTAAAATTTTA
TTGAGAGATAAGAGCAGAAATTTCGAATAAAAAGAACAATAAAAGTAACTTACAAGCACTTTGAT
CTAGATCAGGCATAATGACCACAATGAGTACACTGCAAAAAGTTTTCATAGTCCTTGTGTTCCAA
AGATATTCATAATTCAAGAAAAAGCATCAGAGGCGTTCGTTGGGG


Right flanking sequence: Indices 628786 -- 629285
ATCTAACTGTCACGGAGTAATGGAAGGAGAAACTGAACAATAAAACAACGTCTTGGAAACGTCCG
TAATAAACGGCAAAACTTCAAAAGGACATAATAACCATTACGCTGAGGACGACAAAGGGTTGCAG
TGGGTCCAAATTGCATGAGTGTGCCTGATATAAATTCAACTGTGCTACGCCCAGGCTTAGTTAAT
AGAGCAATAATTGCAACATTGGGTTAAAACAAAAGAGTCTCTACTGCAGATTCAGGGGCCAATTG
ATGCGGGTAATCGAGGCGCATCACTGAAGTCAAATGATGCCAGATTAGGTCAACTTGAGTCAACG
TTGTGCAATTTCAGGGCGATTTCGGTTCAAACAATCAAACGAAAGATTAGTTACAAATTTGAGAA
TCAAGGCAAGCCCGATTGGTTAATAATCGTCTTTGTCGTGCCTTTTTTGTGCTAGTTGCGGCGGG
AACAATAAAGCCTTAATGAAGAACCGGGGGTCCACAAAAGGGATG



Found at i:631442 original size:22 final size:22

Alignment explanation


    Indices: 631414--631458  Score: 81
    Period size: 22  Copynumber: 2.0  Consensus size: 22

     631404 GGTGAATAAA

                       *          
     631414 TAGGTAATGTCTTTATTCAAAG
          1 TAGGTAATGTCCTTATTCAAAG

                                  
     631436 TAGGTAATGTCCTTATTCAAAG
          1 TAGGTAATGTCCTTATTCAAAG

             
     631458 T
          1 T

     631459 GTAAATGGAG


Statistics
Matches: 22,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  22   22  1.00

ACGTcount: A:0.31, C:0.11, G:0.18, T:0.40


Consensus pattern (22 bp):   
TAGGTAATGTCCTTATTCAAAG

Left flanking sequence: Indices 630914 -- 631413
AACTTGCTGCTGGACTTCGTTATTATTTCTTACGCTCCTAGTTTGATCCGATTTCTTTCTTCTAT
TTTGGATTGATTTGGTTACGCTCATAGTTAGGTGTCATATAGTAAATGAGGGAGGGGGGATTTGG
AGTATGTATAAGTTATACTTGGAGTGAAGTTCAAGCAGGTGGAGCCACAGCAGGCGGGGTTTTTA
CTTGCATAATGCAGTTCTTTGGTCATTTCTGGTGATACAATCACTGGTCCACTCTGACCGCTGGG
ACGTAGCTTCCCCTTTCTATTTTATTGGCTGACCTGCCGCTTCTTCAACACTCCGTGCCTAGTCC
GTGGTAGGGGATAGATTTTCCTATGGTAGTATGGCAGTGTATGTGCAAGTAGTGTCATAATTCGT
TTAGTAAATAAATATTAAATCGGCCTTCTTTGGCTCAGTAGGTTATGGTCCTAAAGTGCTCAAAA
CCTTGGTGCACGAGCTGCTCCTATTTCTTTAGTGTGGTGAATAAA


Right flanking sequence: Indices 631459 -- 631958
GTAAATGGAGGTAGTGAGTAACTACTCTTTTCCACTCAGTTCGTAACTACTCTTTTCAAAAAGCC
TCTCTTGCACTATAGAGCTACCCTCAAAACAGTAGCAACAAATCCTGCCAAATAATGGTACATAA
GTTGTTGAGCACTCTGACTCAGTATCCTATGATAGGATGGTTGCACAAAAAGATGTAAGTAGGAA
GGGGAAAGCTCTGTTGACAATTTGGATGCAACTTCAGGAGTTCGGGAGGATGGGGCAAGGAGTAT
GTAATGAAGTAAGAGGCGAATCTTTCTACTCTATGACACCCACTCTGCCCATCGCCTACTCTTCG
CTCTTTCTAGTCAGCTTTTTTATTTTCCTTATTACATGTTCATTACATGAGGATCAGATTGTATC
CTCTAAGGATTTAATTTTATACACAAGGGATCATTTTATTGTCACCATATAGTACACTTTGTTGT
ACAAATGTTCAGTACTGTTATCTTAATTCGTCTATTTATTACAAT



Found at i:638939 original size:17 final size:17

Alignment explanation


    Indices: 638917--638951  Score: 70
    Period size: 17  Copynumber: 2.1  Consensus size: 17

     638907 GCCTATATTT

                             
     638917 AGTAGCTGTATTGATAA
          1 AGTAGCTGTATTGATAA

                             
     638934 AGTAGCTGTATTGATAA
          1 AGTAGCTGTATTGATAA

             
     638951 A
          1 A

     638952 TGTACCAGAA


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  17   18  1.00

ACGTcount: A:0.37, C:0.06, G:0.23, T:0.34


Consensus pattern (17 bp):   
AGTAGCTGTATTGATAA

Left flanking sequence: Indices 638417 -- 638916
CTTATTTGTGGGGCCCCTAGTGCATAGTGGATCGTTAGTTGAATGAAGAGATTAATACTTGTCTA
CTTTTGGCCAGATGAGGGTTTCGACAATGCTCTTAGAGCAGAACTAGAGCTAGAGTAATAATATT
TTCTTTAATATTATATTACCAGTTTATAACCAGATTGAGCCTTATTACTCACCCGGCTGATCCAG
ATACAACAGAAGCGGATAACCCGAAAAGGGAATCGGATGGCAAATTTTGTATAAAGTGTGTTTAC
GAGAGGAATCCACTTTGTTTGACCCAGAATAGAAGTTAAGAGGAAGACTCGAAAGGTAGCCCATA
CTGCCGTACAGTAATGCATAGTGAGTTTCGGGTTGTCAAGGACTTGGCATCAAAGGTTTATGGGC
TGGTAAATGGCCCTGTGTTCGTAGCTTTCTCCTCTATTTTTTAAATATTTGACCCGGGAACCTCC
CTTTGGGTGAATGAAGAGTTATGTCTTAGGTTGTGGCCTATATTT


Right flanking sequence: Indices 638952 -- 639451
TGTACCAGAAAGGTAGCGTGTAGAGGCTTGCGGATAAGTGCAGAGAAGACATGAAACCCAGCGGA
TCGGCAGAACCAGATACAGATAGAGAAAAAAATACGGGTATAGCCTGGCACATTGACTCCCACTC
GACTTGACTCGAAAGGCGCATAGCTTCTAAAGCTGCTTGAGGGATTTTTGAAGTGATAGCTTCCT
GGGGCCTATCTCAGCTGAAAAACAACTCATTTAGCCTTCATTTATGTGTAGTCCACATCCAGAGG
AGGAGAATGCTCAAAGTGCAGAACTAGAGTCTTTTGCGCGCAGTTTCCGAATTGGGAAGGAAGTT
ATGAGAGAGAAGTAGCGGTTTTGATCCGTAGTTTTGGTTCGTGGACTGGCCTGGCTGAACCAGAG
AAGTCATAATTGTTCCGCCTATGAAAGAAGAGTGCCTCCGCACTTTCGGATAGGCCTATATTTTA
GATGGGTTGTACGGGTCCTATCTGGGCAGGGCAGTGGTGTGATTA



Found at i:644243 original size:11 final size:11

Alignment explanation


    Indices: 644227--644252  Score: 52
    Period size: 11  Copynumber: 2.4  Consensus size: 11

     644217 TTAGAAGTCT

                       
     644227 TCTTATCTCTA
          1 TCTTATCTCTA

                       
     644238 TCTTATCTCTA
          1 TCTTATCTCTA

                
     644249 TCTT
          1 TCTT

     644253 CAGGCTACTA


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  11   15  1.00

ACGTcount: A:0.15, C:0.27, G:0.00, T:0.58


Consensus pattern (11 bp):   
TCTTATCTCTA

Left flanking sequence: Indices 643727 -- 644226
GTGAAAGAAATCTATATCTTAGATTTGCATATGGGAACATATAAATATTACTCAGGGATAATCTA
GTTTAGCAGGCAAAAGGTCTATCGTATACAGTCTCCTAGCAAGCCATCCATTGCTCTCATCAAAG
GGCTAATCAGAAGAATGAAGATGAAGGGAAGTAAGCAGACAATTTCTTTCTTAAATAGAGGATTA
TCCTTCCTTCTAGTCTAGCTTCATAACCAAAGCTGGGTCTATGCCCCTCCTTATGAAGAACTCGA
ATATGTATATGCTAAAAGATGCTAGAAATAAATGCTCTATTTGTGTATAAAATTGAGATGCTATA
AAATACTAGAATTCTATGCTCTAAGAAAGCTCTAAGAAAGAAGCCTTTCCTAATAAAACTAGAAT
AGAAGCCTTTCTTTCCTCAGAGAAAGTAGAATAGAAGCCTTTCTTTCATCATAAAAATCTAATAA
TGCTAGTCTAATAAAGAAATAGAATAATGATAGTCTTAGAAGTCT


Right flanking sequence: Indices 644253 -- 644752
CAGGCTACTAACTAAGATGCTGTGCCTCATTCTCATAGTCATGCTTCTTCATGTTCATCTTCAGT
GTAAGTATGCTTCATGAACTTATGTCATCTCTTATATGAGATATGATGATACTTATGTATGAAAT
CTCTGATAAGATATGATGATAGCAATAGAATAGTGTCAATCCAATAGTGGAAAAGAGAACTAATG
CCTTATGCTAGAACCAATGTCTTATGATTGATGGTGAGGATTGTTATTAAGATCTATCTTCTAAT
AAGCAATGTGTCATCTCTTGTGATTAAGATCTATCTTTTCTGGGTAATATCGAATCTTATATATT
ATATACCTGTGATGCTAGCATTCAATGTGTATGAGTGTAGGATACTTTGATTGACTTGATTAATG
TGAAGGAAGCCCCTTATACCGAAGAACTAAAATACCCACTATCGATGAACTTTTTCTTGTCTCCA
AGCAAGGCCTGGACTATTTTGGTTAGTGCACTTCTCAGTTTCCAA



Found at i:673134 original size:24 final size:25

Alignment explanation


    Indices: 673079--673135  Score: 62
    Period size: 28  Copynumber: 2.2  Consensus size: 25

     673069 AATAGGCTCG

                      *     *           
     673079 TTCATAAATACAGTAAGTTTCCTACTCC
          1 TTCATAAATAAAGTAAATTTCCTA---C

                                     
     673107 TTCATAAATAAAGTAAATTTCCTA-
          1 TTCATAAATAAAGTAAATTTCCTAC

                 
     673131 TTCAT
          1 TTCAT

     673136 TAGCGCAAGC


Statistics
Matches: 27,  Mismatches: 2, Indels: 4
        0.82            0.06        0.12

Matches are distributed among these distances:
  24    5  0.19
  28   22  0.81

ACGTcount: A:0.37, C:0.19, G:0.05, T:0.39


Consensus pattern (25 bp):   
TTCATAAATAAAGTAAATTTCCTAC

Left flanking sequence: Indices 672579 -- 673078
ACCATCTGCAAAAGGGAGTGATACAGCATTTCCAGTTGAAGTTAGAGCAGTGCTTTAAAATGTTG
GGTGTGTCAAATACAACTCGTGTACAATCTTTGAGAAGGTATGCGCTCGCTCAGTAGCAGTGTCA
AATGTTAGATCTTTGTTTTATGTGTGCGGGTGTATCATAGGTGGAATCTGTGGACTCGGCTTCAC
CTTCGTTCTTCCCAAACGATGCCGTGTAATTTCCAGTGTAATGTTAGCTTGATGAGTTAGGGTAT
GATGTTGCTTGTTTTCTACCGGCCTCCTTCCTTATCGACTGTACCTTCCTTCATGTCAATGACTG
CCTTTTGCTAGTTACCATACTAATCCTGTTCACGCGAGGTTAGCTCACTCATTGTATTGAAGCCC
TTACTGTCAGAACCATCTGCAGTCGGGTATTTCTCTGGACTGCAAGATTCTCAAGACCAAAAACA
TCTTGAACAAACCGGGATCTCATTTTAACAAGCGGAATAGGCTCG


Right flanking sequence: Indices 673136 -- 673635
TAGCGCAAGCTTTTTATATATAGCTTTAGGTGCTTGTTGGGGTAGGGCTCTTCCACGGTCCTTAG
AAGTTCATCTACGACAGCAAGTGCCAACAACAACGCTAGTAGGTTTGTAGCCTCCTTTGCCCTCA
ATCTTTCTCGTATTCCTTGATCTTGCTCGTGGGCATGGGGTTGGAGATCTACCTTAGCAAAGCCT
TACAAGTACTCTGCCCCCTATAGTTTATTTTGGTACTATACCAGCATTTCCGGAGTCTTTTTGTG
TTCGCGCACATCTTTCTTCAAGTCAACGAAGCGTTTATCAAGCTGGCGGATACAGAATTGAAGTA
GCACTTGGCCAAATTGGGCATCCTTTTCTTCGGCTTATACAGCACACTATCTACATATATTGTAC
TACAACAAATTACACGTACTTTCTTTTTATACATATACTTCTCACGTACTTTTTATACATATACT
TCTCGTGCTACTGCTCCACTTTAGCTTATTCACCCGCTTACCCCG



Found at i:673904 original size:32 final size:32

Alignment explanation


    Indices: 673868--673929  Score: 124
    Period size: 32  Copynumber: 1.9  Consensus size: 32

     673858 TTGTCTTTCT

                                            
     673868 TTGCTTATGCCATGATATTCTTTTGATTCCGC
          1 TTGCTTATGCCATGATATTCTTTTGATTCCGC

                                          
     673900 TTGCTTATGCCATGATATTCTTTTGATTCC
          1 TTGCTTATGCCATGATATTCTTTTGATTCC

     673930 TCCGCGCCAG


Statistics
Matches: 30,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  32   30  1.00

ACGTcount: A:0.16, C:0.21, G:0.15, T:0.48


Consensus pattern (32 bp):   
TTGCTTATGCCATGATATTCTTTTGATTCCGC

Left flanking sequence: Indices 673368 -- 673867
ATACCAGCATTTCCGGAGTCTTTTTGTGTTCGCGCACATCTTTCTTCAAGTCAACGAAGCGTTTA
TCAAGCTGGCGGATACAGAATTGAAGTAGCACTTGGCCAAATTGGGCATCCTTTTCTTCGGCTTA
TACAGCACACTATCTACATATATTGTACTACAACAAATTACACGTACTTTCTTTTTATACATATA
CTTCTCACGTACTTTTTATACATATACTTCTCGTGCTACTGCTCCACTTTAGCTTATTCACCCGC
TTACCCCGACAACTTCTCTTTTTTACAATATACTTTTTGGTTTAGGTGGTACTACTTTACTTTAC
CGCTGACATGAATCATATATAGTGTTCTCCCATCACAGCTAGCCGACTACCATGGCATAGATTCC
AGGAGCAGCAAGTGCTCAAGTTCCAATTTACGTATAACCTAGGTAGGCTACTGGCACGACTTACT
CGCTTGGTACAACTGGACAATTTGGTGGAGTGTGATTGTCTTTCT


Right flanking sequence: Indices 673930 -- 674429
TCCGCGCCAGTCCCAGTTACTCTTCCCTAGCCTTTTTGTGGGAGAATGCGGAGCAAAACGAGTAC
CCAGCAGGTTAAGAGCCATTACTCGAGTTCAAATTCACTTCACAGGACATCACGGGAACGGGTGC
TCCTGCCACTCCGCTAGTATTTCCCAATGAGATTGCTCTCTAACGAATGAGCATGGATTCTCTTT
GTAGTAAGGTGGGGCTACATACCCATCAGGGAAGGAGGGATCTCTTTCTTGGCAAGAGGTTATGT
ATATGCGTGTCGACGATTTCAGCACGTCATTTATTTGCCATATGAGAATGTCCTGCACTCTCTTG
AGGAATAAAGAGTGTGTTTCCACTGAGCCTCAGAACTTGAATACCATGTATCGGGGGCTCATGAT
ATGCTATTTGAAGAGCTGGAGGAGTGGGATCTGGTAATATGACAGAGAAAGAACTCATGTCTGTC
AGATGCTATTTGAAGAAAATATCCTCCCGAGGGGATCGTTTCGAG



Found at i:683862 original size:17 final size:17

Alignment explanation


    Indices: 683840--683880  Score: 55
    Period size: 17  Copynumber: 2.4  Consensus size: 17

     683830 TTAACTTTTG

                             
     683840 AGTAGGTTAGACAGTAA
          1 AGTAGGTTAGACAGTAA

                  *    *    *
     683857 AGTAGGATAGAGAGTAG
          1 AGTAGGTTAGACAGTAA

                   
     683874 AGTAGGT
          1 AGTAGGT

     683881 AACCTCCCGC


Statistics
Matches: 20,  Mismatches: 4, Indels: 0
        0.83            0.17        0.00

Matches are distributed among these distances:
  17   20  1.00

ACGTcount: A:0.39, C:0.02, G:0.37, T:0.22


Consensus pattern (17 bp):   
AGTAGGTTAGACAGTAA

Left flanking sequence: Indices 683340 -- 683839
CCCACGGCACCTAAAGAAGCTATACTCAAACAGCTTTCGTGGGTAAAGACAAATTTAAAACAGGT
ATGGGTAGGTAATTGCAAAACCCCTTTTACTTTGCACTCACTATCAAGGTATCTGGTCTCTATCA
TTGAAAGTACCTTTAGGTGTGGATGAGGACGAAGGTGCCGAGCTTACTGATCCTTTCCTGTACTT
GCATGTGGGTTGGGTATAACCTGCAAAAGATCTGACACAGGAAAAAGGATATGGGTTCCAGTTTC
TTACCTATGTTTATTAGGTACAAGGAGTTTAGGTTAGGAGGTTAGGTCAGTTTATTAGGTTAGGG
GAACTGGTTTAGGACAAGAGAACGGGCGAAGCTATGATTCCACGGTTTCTGTTAGACTAACACAA
TCAGTTCTATTACCAGCAGTACCAGATCAGTATCCGAGAGCAGAGCTTAATAAGAGGAGATCAGA
TAAGAGCTATTAACTTAATAATAGTTGTTCCGCTTTTAACTTTTG


Right flanking sequence: Indices 683881 -- 684380
AACCTCCCGCACGAGGGGAAGGGGGTGGCTTTTGAAATAGCTGTATTGGCGAAACCCCTTGGTTG
AACCTGCAAACACTCTGCAACAACTTATATGGTTCCGGGTACTAAGCTAGTCTGTTACGGATTCT
GTTAGAGTATTTTTTCATGGATACGATATATGGATTGTTTGTGACCTTAGCTTGTATTAACGCCC
CTAAAGAGATAGACTTTTACCAGTTATAGACTAATCCTTTTATAGACTACGACTATTCCTTGGCC
AATTCGCTCTGTAAGAGTGGCGGTTTTTAAGTTCTTTCTTCTACGCTGCTAGTATCAGTCTTAAC
CAGCTGAGCACCGGCAGCTAGTTTGAGTTAGAGAGACAGAGTTGGTAGGCAGGCTACTATTAGGG
ATTTTTTATACTTTTTATTTGTTGCCGGGATACTGTTTATATTACTGGCTTTTAAGTTAACCTTA
TATGAATCTTCCCTTTTTGGTGTAAGCTTTTTCGTGGCTTGTTAT



Found at i:741814 original size:12 final size:12

Alignment explanation


    Indices: 741797--741824  Score: 56
    Period size: 12  Copynumber: 2.3  Consensus size: 12

     741787 AATTTACAAC

                        
     741797 TAGGTAAGCAGA
          1 TAGGTAAGCAGA

                        
     741809 TAGGTAAGCAGA
          1 TAGGTAAGCAGA

                
     741821 TAGG
          1 TAGG

     741825 AGAAAGAAAG


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   16  1.00

ACGTcount: A:0.39, C:0.07, G:0.36, T:0.18


Consensus pattern (12 bp):   
TAGGTAAGCAGA

Left flanking sequence: Indices 741297 -- 741796
ATACATTCAGGCTTATCACTTAATAATGTGGTTTATTAGAAGAATACCATCGTTGCTCTATCTAT
CGTTTAATTTCTTTTGTTAACATTCCATTGAATTAATTTAGTGAGGCTTCCCACAACGACCTACG
ATTCACTTTACCTCGGGCGCAATGATACCACTCCAGGATTGATACCACTCAAGCATTCGCCTAAC
CCACTTATATTCCCTACACCCACTCTTCGACTTCCTTGCAGGCTTTTACAAGCGAGCGCATGCTA
GAATATACGGCTTTTATACTATACCGGGGGAATTGCTTGGGCCTCTTTTTGACGACCTAGTAATT
TTACTACTTCCAGCTGATAGGTCAAACACTTTATTACTGAAGAAAGAAGCCTTCCCCACAAGAAG
AGTCGGGACAACTGGGCTAGCAGAAATCCGGACACTTGAGCTACTGGACTAGTCATCATGGGCGG
CATGGCCCAAAGAAAAATACCGCACCGGTTAGAGAAATTTACAAC


Right flanking sequence: Indices 741825 -- 742324
AGAAAGAAAGGGCTGGCTGGCACGGGGGGGTACATAGACATAGAACACTCGCTTTGTTGAAGCTT
ATTTATGTAGGTAGGGGTAGTAGGAATAAGAAGTTTGTTTAAGCTACAGTGGTAGGAAAGCTGAA
GAAGCAAGAAGAAGGAATCCGATATTATTGCATTTTGGAAATAAAGCTGTGGGCCCGGGAAAACG
GCTTTAAAGAAAGGAAGCTCGCTCTTCTAAGTCAGAGTCTCTCTATTCTCTTTTTCTATTCGCAT
TCCCCGGAAATGAAATGCACCGCTATTCCCTGGAAATTCCAGTAAGAAAGATAAAGTCGAATTCA
ATCACTCCAACCGAGCGAGCAATTGTTCAATGTTCACTTCGATCATGTTCAACCTTCAGCTAGCT
ACCTCACACTCACTCAAATAGCAAAAGCAAGGAAATTTACTAATATATATATAATAGGCATTTAA
ACTACTTATTTTCTTTCAAAGAGTACAGGCAAAGACTAAGCCCAC



Found at i:773299 original size:21 final size:22

Alignment explanation


    Indices: 773270--773324  Score: 62
    Period size: 21  Copynumber: 2.5  Consensus size: 22

     773260 CACCGCTTAT

                *                  
     773270 TTCACCTTCTTTG-CTAGGATA-
          1 TTCATCTTC-TTGCCTAGGATAC

                                  
     773291 TTCATCTTCTTGCCTAGGATAC
          1 TTCATCTTCTTGCCTAGGATAC

                         
     773313 TTC-TCTTGCTTG
          1 TTCATCTT-CTTG

     773325 TAGAATTTTT


Statistics
Matches: 30,  Mismatches: 1, Indels: 5
        0.83            0.03        0.14

Matches are distributed among these distances:
  20    3  0.10
  21   20  0.67
  22    7  0.23

ACGTcount: A:0.15, C:0.25, G:0.15, T:0.45


Consensus pattern (22 bp):   
TTCATCTTCTTGCCTAGGATAC

Left flanking sequence: Indices 772770 -- 773269
AAGACGAAGAAAGCCATGAGGAATTCACGGAAGGAAGCTATGTTTGGTGCCAAGCCAGTATCCCA
ACAACTTGAATCTGTAGAAAGAACCCACCTCTGAGATTGCCTCTTTCCCACCAGATGCTTGAATT
ACTTTCTGCGAGTAAGCCGAGTAGGAGAGTTTTTGTGTGTGCGCCCTAGGTGGTAAGTGGTTAAA
TTAAATTGATCAACGCAAATACCCAAATACACTCTTTACAAAGAAACTGACCCTAAGTTAAGATG
GTCCTACCTACTTTGCAGTACTGCTTTTCCCCTTTCACTTCTGTCCTACTTCTTTTGTCAACTTC
GAAGTTGCTTACTCGTGTGAAGCTTTTGTCTACGTACGTCAGCGAGGAAGCTTTCTATGTATGAA
AAAGGTTCTCTTATCTTATTGGCGTGTCACTCAATCTTGGTTGTCTTTTTTGGAGTGTACTGGTC
GATCGTCTTCGAAGCTTGCTTGGTCAGCTTCTCAACACCGCTTAT


Right flanking sequence: Indices 773325 -- 773824
TAGAATTTTTCTTTCTTTCAAGTTGATGCCTTGCATGAGCACTGTAGCCCGCCTCCCTCAGGAGT
ACTCGTAATGTGGGTCTTCTAGCTCTTAAGTGCCCATCTCTCAGACAGAGGAATTTCGAACGTTT
TTCTGGGAAAGGAAGTACACGTACTCCAAGAAGTTCTTCGTTTCGGGGCCAATCAGTTGATGGGA
CGTGGGCAGTTTTTGGTAGGCCAAAGGATGTATCTTTTGTAGTAATTCCATCTCATTATCTTTGG
GCCGGCCTTCTTCCTTCGATTAGTGTAACTAGTGGGAAGTAACAATCCGTCTTGCCTGGCTGGCT
CCGATGTATCGGATACCATGATAAGAAAGCTCATAGGGCTCTGGCCAAGAATGCACCCGAATGCA
CCCGTGGGAAAAGTTCTTTACAAAAGCTTGTAAGAAATGAAAAGGAAGTTGGCAATACTTTATTT
TTTTCTGCCTAAGTCGTCTTCTTTATAATATTCAAGGGCTCGAGC



Found at i:780197 original size:18 final size:18

Alignment explanation


    Indices: 780174--780209  Score: 54
    Period size: 18  Copynumber: 2.0  Consensus size: 18

     780164 CATAAACGCA

                   *          
     780174 TCTAAGGTAAGCTACTGT
          1 TCTAAGGGAAGCTACTGT

                    *         
     780192 TCTAAGGGGAGCTACTGT
          1 TCTAAGGGAAGCTACTGT

     780210 AATATATATA


Statistics
Matches: 16,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  18   16  1.00

ACGTcount: A:0.25, C:0.17, G:0.28, T:0.31


Consensus pattern (18 bp):   
TCTAAGGGAAGCTACTGT

Left flanking sequence: Indices 779674 -- 780173
TAGAACCAAAGGAAGGGAGGGACTACTTCTTCAAATGAGCTGGGATGAGGTGATCCGAAGTGACA
CGTGTTAAATGATCATTTACGATATGAAATAAATGCTCATTTACGCTGCGCGCCTCACTTTCCAA
TTAATGAATTGGCGGGCATTGGCAATTAATGGACGGGCATTGCTGTGTTTGTGTTCAGTAAAGAA
GTATCTTTCTCTTGCTCTTATAATTCCCTTTGATGAAAAAAGTCATAGTCATATGTAGCTAGATA
ACAAAGTAGATCCCAAAGGTTCTCTCATGAAAGACAGTAACCGGGGCCACTTGCTACTTATCTAC
AGTAACTAACCGGAGCCCACTTGTATCTATACTATAATACGTGATTTCATTCGTTCTTTACACAA
TTAACAGTGACTTGCTACCAAAGAGGCAGGCGCATTTGCTGCTACAGTGAATTACGGATTGGATA
TGACAGGACATAAACTGATGCAACATGAAAAACGGCATAAACGCA


Right flanking sequence: Indices 780210 -- 780709
AATATATATATGTTATAAGAATTAATCGAATGGAGAAGCCGGTTAATAGATAGGTGAAGTTATCT
CCGCTTGCCTTTATCTTTTAACTCTCTAAGAAGAATGCGCCGGGTTAATTAATTACCTTATTTGT
ATGAGCAGTCTTTTTCCTATACAATATATACCCGATGCTTAATATGTGCGCGCGTAAGTGAATGG
ATGCTTTCAGATAAGCACTCAGATCAGACGAGCTCAAAAATAAAGTACTAATAAAGGAGGAATTC
GTATCATAGCTCCGCATCTTGCCGATGTAAACAAGAAACTTTCAAGCCAACAAAGAAAGAGCTTT
CCTACTATTAACTATTAACCTAATATTAACTATTAGTAATAGGGGACTACTTTGTTTTAGACCAG
TTTCTTCTTCCCCTTTCTCTTGGGTTCTCGTTAGCTAGCGGATAGATCCCGCCTCGGCAAGTCGA
TATAACATCGGTACTGCCAAAGAGTAACGTTTCTTTTTCTTGTCC



Found at i:780561 original size:18 final size:18

Alignment explanation


    Indices: 780535--780569  Score: 61
    Period size: 18  Copynumber: 1.9  Consensus size: 18

     780525 AAAGAGCTTT

                *             
     780535 CCTACTATTAACTATTAA
          1 CCTAATATTAACTATTAA

                             
     780553 CCTAATATTAACTATTA
          1 CCTAATATTAACTATTA

     780570 GTAATAGGGG


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  18   16  1.00

ACGTcount: A:0.40, C:0.20, G:0.00, T:0.40


Consensus pattern (18 bp):   
CCTAATATTAACTATTAA

Left flanking sequence: Indices 780035 -- 780534
ATACGTGATTTCATTCGTTCTTTACACAATTAACAGTGACTTGCTACCAAAGAGGCAGGCGCATT
TGCTGCTACAGTGAATTACGGATTGGATATGACAGGACATAAACTGATGCAACATGAAAAACGGC
ATAAACGCATCTAAGGTAAGCTACTGTTCTAAGGGGAGCTACTGTAATATATATATGTTATAAGA
ATTAATCGAATGGAGAAGCCGGTTAATAGATAGGTGAAGTTATCTCCGCTTGCCTTTATCTTTTA
ACTCTCTAAGAAGAATGCGCCGGGTTAATTAATTACCTTATTTGTATGAGCAGTCTTTTTCCTAT
ACAATATATACCCGATGCTTAATATGTGCGCGCGTAAGTGAATGGATGCTTTCAGATAAGCACTC
AGATCAGACGAGCTCAAAAATAAAGTACTAATAAAGGAGGAATTCGTATCATAGCTCCGCATCTT
GCCGATGTAAACAAGAAACTTTCAAGCCAACAAAGAAAGAGCTTT


Right flanking sequence: Indices 780570 -- 781069
GTAATAGGGGACTACTTTGTTTTAGACCAGTTTCTTCTTCCCCTTTCTCTTGGGTTCTCGTTAGC
TAGCGGATAGATCCCGCCTCGGCAAGTCGATATAACATCGGTACTGCCAAAGAGTAACGTTTCTT
TTTCTTGTCCACTGAAGCTATTGTAAATCGCTGCGCCCCTTCCATTCCAGCCATTTGACTTCCAA
TAGGGGTATCTAAACTAGACCTACTCCTGCCTCACTTGCATCGGTTGACTAGCGCATTCGGAAAC
CAAAGCTATGGCGGAAGTATTGAATCCGATTCTTAAAGAGTAGGAAATGGGGAAAATGGCAAATC
GCGAGACCAAGTCAGTGTCCGAGTACGGAGTAGTAAAACCAGCTCATTTCCATTCTTCATCTTCC
TTCTTTATTGAGAGTAGTCCTTCACAAGCTTTCAACAATGAATCAAATAGGAGGTTAATAGAGCG
CTAAGCCTCTTGTTGCTTGTTCGTGTAGAGCAGAATAAGGCTCAT



Found at i:800457 original size:21 final size:21

Alignment explanation


    Indices: 800431--800470  Score: 80
    Period size: 21  Copynumber: 1.9  Consensus size: 21

     800421 CGGTCCACCA

                                 
     800431 CATCAAGGTGATAGGATTCCG
          1 CATCAAGGTGATAGGATTCCG

                               
     800452 CATCAAGGTGATAGGATTC
          1 CATCAAGGTGATAGGATTC

     800471 GAACCTATGG


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   19  1.00

ACGTcount: A:0.30, C:0.17, G:0.28, T:0.25


Consensus pattern (21 bp):   
CATCAAGGTGATAGGATTCCG

Left flanking sequence: Indices 799931 -- 800430
CCCTTCCCTCACTAAAAGGGTATTCTACTCACTAACGCTTACCTCCCTAACAGGGTATTCAAATA
ACACTAACAGGGTAAGTAAGTCAGGGTATTCTCCTAAGTAAAGGGTATTCCCATAAGATACGTAA
AGGGTATTGGTTAAACAGGGTATGTATTCTCATAATCCTATATATTCGTTACATGAGAAGAGGAA
TCAATCAATAGTACTAAAAGAGTAAGTAGGACGAATCAAGCAATAAGGAAGTACTAAATGCAATC
TTGTCTTGTCTATTCTCTTTGTTCGGCACAACCGGTAATTCCGTACTGTAACTGACCTAAGAAGA
CTGTAAACTAAATACTGTTAAGAATACCGTCAACTAATAATACTTTATGTAAAAGAACTCAGTCC
AACCAAGGGAGGAAATATTAATACTTTAACGGAACTCAGTCCAAGGAGGACATGTTTCCTATTTT
CTTTGAACTCACTTTGTTCATTTAGATTGGCATTTCGGTCCACCA


Right flanking sequence: Indices 800471 -- 800970
GAACCTATGGGACAAAGTCCTACGAACTCTTTTCCCTAGGAAAGCCATCTTCACAACCTCTTTTT
TTAGTAAACACCGGTAAAAACGTCCTACCCTTCTTTGCCCTAAGTAAGTGCATTTTACAAATGAA
CTTTTGATGCCAGCCTATAGCCAAAGTAATAAAAGCGATTTTCCCTAATAAAGAACTTCACCATT
TCCACTTTTTGATGCCAGCCTATAGCCAAAGTACTACTTTTTGACTAAAACCGGCAAGCTCGTTA
GAGGGAAAACCGGAAGTATGCCAAAAAACACGGTGTTTGATAATTTTGCAATAAATTGGCAAGCT
CCTTAGATAGCAAATCCAATTATGCCATTTTTCCCGGTGTTTCATGCAAAAGTCAAAAACGAGGA
CTGTTTTGTTCCTTTCCATCCCATTATGCCATTTTTACCGGGGTTTACTACTTCCTTGGAATACC
CTTGATTACCGACATTTTGGGCATCTCAACTAGACCTATACCCAG



Found at i:802161 original size:30 final size:30

Alignment explanation


    Indices: 802127--802183  Score: 87
    Period size: 30  Copynumber: 1.9  Consensus size: 30

     802117 TATCTTTTGA

                      *  *                
     802127 CTGGCTCCTCGTACTAAAAGTAACATATGC
          1 CTGGCTCCTCATAATAAAAGTAACATATGC

                            *          
     802157 CTGGCTCCTCATAATACAAGTAACATA
          1 CTGGCTCCTCATAATAAAAGTAACATA

     802184 AACTTGGCAG


Statistics
Matches: 24,  Mismatches: 3, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  30   24  1.00

ACGTcount: A:0.33, C:0.26, G:0.14, T:0.26


Consensus pattern (30 bp):   
CTGGCTCCTCATAATAAAAGTAACATATGC

Left flanking sequence: Indices 801627 -- 802126
ACCCAACCAACCTATTTATGGGCAGTGCTTTCGGTTATAATTGCAACATACATCTTTTCTGGTTA
TGCACCATTGGTACGCCGGCCGCCGTTATGCACATTGGGTGTGACTCTGGCTTCACATACTACGA
CACATGCTACGACTATTAAGTTAATTTTTCTAATGGTTTGAGTCGACCTATATGCAAAACCCCTC
AAGTCCTTTTTCTTTTCCCACGGCTTGTGGACTTTGTCTTTCCACCCGGGCCCGCACGCGTAACC
TGCTTTTCATGCTTTTTCGGATCGAGATAGCATTTCCTAAAACCTTCCTCGAGCAACCCAAACAT
TCCAGTTAAAAAAAAAAAGTGCAATGATATAACGGAACATGCTATTTGAAACTACTAAGAATCTT
TCGTATTCAGCTAAGCTCAGGGAAAGAAGGATTTAGAAAAGTGTAAGTGCAGCAGCTCACTAAAG
CCCATTGACAAGGGATGGACCTGATTTCTTACTGCTATCTTTTGA


Right flanking sequence: Indices 802184 -- 802683
AACTTGGCAGTGGAGAAATACTACCACAGTGGAGAAATACTACTACATCTGTATCAGGGGTGCTG
TTTTCCAGATGAACTCTGATAAAACACCAGGCCCTGATGGCTTCCCTATGATCTTTTACCAAAGT
TTCTGGGAGCTGGTTAAGGAAGATTTGTGAAATTTATTTTCTGATTTCTATCACAATAGGTTATA
TATTGCTAGTTTTAATAAAGCTATCATATGTCTTATACCCAAGGTGACAGATGCTTCTAGAATAG
GAGATTTCAGACCCATTAGCCTCCTTAATTGCAGTTATAAGATCTTCACAAAAGTTTTAGCTAAT
AGAATGGTTCCTATCCTTAGCAGAATCATCCAGCCCAGCCAAAGTGCCTTTCTGAAGAAAAGGTA
CATCTTAGAGGGTGTAGTAGCAGCACATGAAATTTTACATGATATCCATAGACATAAGGAAAAAG
GAATGCTTCTCAAACTTTACTTTGAGAAAGCATTTGACAATGTCA



Found at i:827264 original size:14 final size:14

Alignment explanation


    Indices: 827241--827275  Score: 52
    Period size: 14  Copynumber: 2.5  Consensus size: 14

     827231 TTTGCTCCAA

                 *        
     827241 ACTTAGGGCAGACT
          1 ACTTAAGGCAGACT

                       *  
     827255 ACTTAAGGCAGGCT
          1 ACTTAAGGCAGACT

                   
     827269 ACTTAAG
          1 ACTTAAG

     827276 TCAATGTGTC


Statistics
Matches: 19,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  14   19  1.00

ACGTcount: A:0.31, C:0.20, G:0.26, T:0.23


Consensus pattern (14 bp):   
ACTTAAGGCAGACT

Left flanking sequence: Indices 826741 -- 827240
TCTATCTCTGTCTCGCTCCTTCTAGCTTCTTCTCTCTTATTCTTCCTTAGTACTCCTTCTCCTAG
TAGGAAAGAACTGCTGAAGCCTTCTCAGACATGCACCCCAGAGAAGTTTAGGTTCAATTAATTAC
TCGAGGGTGAGAGAGAGGCGTAGGACGGAAAAGCGGAATATAGGAGTCGAAGCTGAACCCTATCT
ATTGATGGACAGCTCACAATTCAATTTGAATCAAAAGCAGTTGACGACTTACCATGGACGAAGAG
CAGATTCGTGCCATTAGGGAATGGAGGTGGGAAAGGAGGATTCACCATAGAAAATTCTCTTAATC
ATATATAAATCTTAATTATATATTCCATATCACCAGTGTCAGATGTAGTAATGAGTTATGACAAG
GAAGGGCATGTATTAAACGAGAAAAAAGAGAAAAAAGAGAAGACTGGATTGGACTTAATGGATTG
ACTTGTAGATTTAGTTCATTTACTTTGTTTGTGCATTTGCTCCAA


Right flanking sequence: Indices 827276 -- 827775
TCAATGTGTCGGTCTTTTCCCACCATCGATCATACCTGCTTTTATCGAAGAGACCCGCCTTGCGC
CGCATTGGCTAAACCTTCTTGGCAGGCCTGCTTGCATTACTAGTCAAGAGTTCTTAATATCAGAA
GTTCTTTGGTACCATGAATTGCCCAGACGGAAGAGTCCCTCCTAAGGTGAGTGGTGCTGACGAAG
CAAGCGGTTGAAAAAGAAGTGCGGTGCTCCGGGCAGGGGACTTCATCACTCTCAGCCCATAGGGA
ATCGCATACACAAAGTGTAGTCTTATTGGTTGGGCCTTGTTTGGAACATTTGCTCATACATATAG
ATTACTCGCACGACGCTCGCATTGTCTGACGCGCATTTCCTCATAAAGAATCGACTACCTTTCAA
CCACTAGTGCGTTTTTCCGATTGAAGTGATAGAATTGCCGTATCTTTGAAGGGTGCTGGCATTGC
AAATCTTTTCTGTAGGGAGGTCAGGCTAGACAGAATGTGTTTTTT



Found at i:827859 original size:18 final size:18

Alignment explanation


    Indices: 827836--827873  Score: 67
    Period size: 18  Copynumber: 2.1  Consensus size: 18

     827826 TGAATAGATA

                   *          
     827836 TACTACTTAGCTTAGGCT
          1 TACTACTGAGCTTAGGCT

                              
     827854 TACTACTGAGCTTAGGCT
          1 TACTACTGAGCTTAGGCT

              
     827872 TA
          1 TA

     827874 TTTAAGTGAG


Statistics
Matches: 19,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  18   19  1.00

ACGTcount: A:0.24, C:0.21, G:0.18, T:0.37


Consensus pattern (18 bp):   
TACTACTGAGCTTAGGCT

Left flanking sequence: Indices 827336 -- 827835
TGCGCCGCATTGGCTAAACCTTCTTGGCAGGCCTGCTTGCATTACTAGTCAAGAGTTCTTAATAT
CAGAAGTTCTTTGGTACCATGAATTGCCCAGACGGAAGAGTCCCTCCTAAGGTGAGTGGTGCTGA
CGAAGCAAGCGGTTGAAAAAGAAGTGCGGTGCTCCGGGCAGGGGACTTCATCACTCTCAGCCCAT
AGGGAATCGCATACACAAAGTGTAGTCTTATTGGTTGGGCCTTGTTTGGAACATTTGCTCATACA
TATAGATTACTCGCACGACGCTCGCATTGTCTGACGCGCATTTCCTCATAAAGAATCGACTACCT
TTCAACCACTAGTGCGTTTTTCCGATTGAAGTGATAGAATTGCCGTATCTTTGAAGGGTGCTGGC
ATTGCAAATCTTTTCTGTAGGGAGGTCAGGCTAGACAGAATGTGTTTTTTTGAATTCGATGTATG
CTTGACTTCCTAGTGATTTATTTTCCGAATAGAATTGAATAGATA


Right flanking sequence: Indices 827874 -- 828373
TTTAAGTGAGGAGGACCATTCCAGTAAGTTAAGTAAGTGCGTGCGTGACTCTTTGCATTGGCATT
TGCTCGCCCTATTATATAATTCCCACCTGGCTGGCTGCTTTTTCTTGTCCGAATCGATGTTGCAT
TGACAAAATCCCTCTTTCTGAAACAAACTGGTATTCAAAGTGAAGGATAAAAGCCGGCTTGCTAG
CTCCCTTCCTAGCGAATTGCTTTCATTTCCCACGGGAGATGGCTTTCTTTTTACAAGTGGTATTT
CTTTATTCTCCATATTGGCATTGAACAGACAGAGAGAGAGAGCCCGCCCTCTTCCAATGTAGTAG
CCCAACTTCACATCCTTAACAACGGCGTAAACACTTATATAGGGGCAGCCGCAGGACGGGACCAA
TCCTTGGTCCGCCTAGTACCAGCCTAATAAATTCAAAGAAACTACACGGCTATATTATGTGATTC
ATAAAATGTTCTCTTTTTTCTTCTTTCTAGTAGTAGAAGAGTAGC



Found at i:828741 original size:26 final size:26

Alignment explanation


    Indices: 828712--828787  Score: 134
    Period size: 26  Copynumber: 2.9  Consensus size: 26

     828702 ATTTGACTTT

                         *  *         
     828712 TATCATATAAAGTTGATTCTATTATA
          1 TATCATATAAAGTAGAGTCTATTATA

                                      
     828738 TATCATATAAAGTAGAGTCTATTATA
          1 TATCATATAAAGTAGAGTCTATTATA

                                    
     828764 TATCATATAAAGTAGAGTCTATTA
          1 TATCATATAAAGTAGAGTCTATTA

     828788 AACAGTGGAA


Statistics
Matches: 48,  Mismatches: 2, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  26   48  1.00

ACGTcount: A:0.41, C:0.08, G:0.11, T:0.41


Consensus pattern (26 bp):   
TATCATATAAAGTAGAGTCTATTATA

Left flanking sequence: Indices 828212 -- 828711
CCTTAACAACGGCGTAAACACTTATATAGGGGCAGCCGCAGGACGGGACCAATCCTTGGTCCGCC
TAGTACCAGCCTAATAAATTCAAAGAAACTACACGGCTATATTATGTGATTCATAAAATGTTCTC
TTTTTTCTTCTTTCTAGTAGTAGAAGAGTAGCGCTACTCTACCCCACTACTGTGTTAATCAGTCA
TCTTCGCTCTCCTCGAGGCTTCGCTCCTCCTATCTTCAAAGCCCATTTTGGACTGGGCCTTTAAA
CCTTGAGAGTTCTGGCATCCATTTTCTTTGGAATCAGCCACACCTTTGCGTCCTGTTGAGAGTTC
TGACCTCAAGTGTCCCAGTCTGGAATTCCCATTTCTGCTCTGTCTTTTCCAGGAAGTCTACGCGG
CTTCTTTTGTTCGTAACTACTCTTTTCTTTTTTATCGTAAATAGTGTGTGAAATTGAATTTCATT
AAACTCATAAATAGTGTCTTGAATAAGGATTCTCGATTTGACTTT


Right flanking sequence: Indices 828788 -- 829287
AACAGTGGAATCAGCTAATGGTGTCTAACTTGTGATCGAGAAGGCGTCGACCCAAAGTGCCCTAC
AATAGCGTCCCGAAATGGGTCCGTAGTGGCCGGACAACCGATTCGCCATAAGATCCCTTGTGGGA
TTCAGTACGCTGAGCTTCACATATAGTTTTAAAATTCACTTTTGATCTATGCTTAACACATGCAA
GTCGTTTGTTCTTCCTTGTTTTTGTTGTTTGTCTTGTGCTCCGTCCAGTAGGATCATTCCATTCT
TGATTTTCGTTGGTAGAACCCACGCAATTAGCATCTGAACTCTCTGGACGGGATATCCTGCCTTT
TTCACTCGTAACATTATACGTTGCTGAGTTCAAAACCCAAGAAATTCTCTCCACCAAGAAATTCT
CTCCAGCAAGAAAACTACTGCGCCTAACGCGCACCGAGCGAGTAACTACGGCATGTTACGAGCAT
AAAATTGAGCGCAGGCAGCCGGTGCTTGTTGGTTACTGGGGGAAG



Found at i:829171 original size:17 final size:17

Alignment explanation


    Indices: 829149--829190  Score: 75
    Period size: 17  Copynumber: 2.5  Consensus size: 17

     829139 AGTTCAAAAC

                             
     829149 CCAAGAAATTCTCTCCA
          1 CCAAGAAATTCTCTCCA

                             
     829166 CCAAGAAATTCTCTCCA
          1 CCAAGAAATTCTCTCCA

            *       
     829183 GCAAGAAA
          1 CCAAGAAA

     829191 ACTACTGCGC


Statistics
Matches: 24,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  17   24  1.00

ACGTcount: A:0.40, C:0.31, G:0.10, T:0.19


Consensus pattern (17 bp):   
CCAAGAAATTCTCTCCA

Left flanking sequence: Indices 828649 -- 829148
GTGAAATTGAATTTCATTAAACTCATAAATAGTGTCTTGAATAAGGATTCTCGATTTGACTTTTA
TCATATAAAGTTGATTCTATTATATATCATATAAAGTAGAGTCTATTATATATCATATAAAGTAG
AGTCTATTAAACAGTGGAATCAGCTAATGGTGTCTAACTTGTGATCGAGAAGGCGTCGACCCAAA
GTGCCCTACAATAGCGTCCCGAAATGGGTCCGTAGTGGCCGGACAACCGATTCGCCATAAGATCC
CTTGTGGGATTCAGTACGCTGAGCTTCACATATAGTTTTAAAATTCACTTTTGATCTATGCTTAA
CACATGCAAGTCGTTTGTTCTTCCTTGTTTTTGTTGTTTGTCTTGTGCTCCGTCCAGTAGGATCA
TTCCATTCTTGATTTTCGTTGGTAGAACCCACGCAATTAGCATCTGAACTCTCTGGACGGGATAT
CCTGCCTTTTTCACTCGTAACATTATACGTTGCTGAGTTCAAAAC


Right flanking sequence: Indices 829191 -- 829690
ACTACTGCGCCTAACGCGCACCGAGCGAGTAACTACGGCATGTTACGAGCATAAAATTGAGCGCA
GGCAGCCGGTGCTTGTTGGTTACTGGGGGAAGAGGAGTACGATATAAATATAATTTTACTTATGC
CGCCAGTACAAAGGAATCAAGAACTGGAAATTCAGATAGTTAATGAGATTGACAGACTAAATCAG
CCTGGACTCTATGAGAGTTCAATTCCATCTACCTTTTATGACAACCATCTGAACGAATTGAGCAA
GACACTGGATATCAGTCAGCAAGCATATGACTGGCACCTCCAGCATATTGCCGATCTTTTATCTT
TTTATAGCCAACAATCCGTTCTAGTGGAGACCTTAAATAATTTGTTTATTTCCCTACCATTTGAA
CTGCAGCATAAACTCATAATTGGCCCCGCCAAATCAGCAGCACTTCGTCTTATTTGCCATAGATT
GGATCCCACCTCCAATCCATTGACAAACCCTTTTTCTGCTGTTGC



Found at i:840931 original size:51 final size:52

Alignment explanation


    Indices: 840833--840933  Score: 168
    Period size: 51  Copynumber: 2.0  Consensus size: 52

     840823 CTTAGGAAAG

                       *            *         *                 
     840833 CAAGCAAGCCATTTATTCTCTTATTTAGTAAGCACGCAAGCCATTTATTCTA
          1 CAAGCAAGCCACTTATTCTCTTATGTAGTAAGCAAGCAAGCCATTTATTCTA

                                                              
     840885 CAAGCAAGCCACTTATTCTCTTA-GTAGTAAGCAAGCAAGCCATTTATTC
          1 CAAGCAAGCCACTTATTCTCTTATGTAGTAAGCAAGCAAGCCATTTATTC

     840934 ATTCTATCGG


Statistics
Matches: 46,  Mismatches: 3, Indels: 1
        0.92            0.06        0.02

Matches are distributed among these distances:
  51   24  0.52
  52   22  0.48

ACGTcount: A:0.32, C:0.24, G:0.13, T:0.32


Consensus pattern (52 bp):   
CAAGCAAGCCACTTATTCTCTTATGTAGTAAGCAAGCAAGCCATTTATTCTA

Left flanking sequence: Indices 840333 -- 840832
TGATAAGAGTTGTCTATTGTGTGTGTGTCCTCTTGCTCTTTGAGCGTCTTTTATCCTATAAGGGT
AATCAAAGAGAGTGGTGCTCTTGCTCTTCCAGTTCGTCTTCCTGTTCCTCTTCCTCTCTGTCTTT
GAGCGTCTTTTATCCTATAAGGAGCCAGTAAGTGTGTGGTACTCTCTCTGACGAGTAACCTTATT
TGCTTATTGCTACTAGACTATATAGATTGAAGCAAGCAGAAGAGCTTCAGACCTCAATCAAAGAT
CAGCTAGCAAATGCCAAAAATACACTATATAAGAGAATATAAAAAGGTTCGATGATCAATGGGCA
AAGTAAAAGCTCAGTTGACTATTGCCCGCTGGATAGGATTTTAGAACACACTCTGGACTAGGCGT
CTTAGTCATTCGGACGTACTCTTAGGTCTTGAAAGACAGACAATGCGCGCGCGAACTCATATTTA
TTACTCAGTCCGGGAAGGAAGCAGCAGCAACACTTCTTAGGAAAG


Right flanking sequence: Indices 840934 -- 841433
ATTCTATCGGCAGAAAGGAAGAGTGACAGAACTTACTTACTCTCCTTCAGGTAATTACCACGACC
TTAGGCAGGCCGGAGATTCTGAATTGGATCTGCCGCCCCCAAAAACTCCTTTTAAAGATGCATCA
GGTTCCATGAAATATACAGAAAGAGCAACTCACTTGAAAATTTCCTATTGCTTGCCGCCAATTCG
AAAGATAACTATACTGCCCACTTTAACCTGGACCATAGATTCTGGCTTGAGACAACATACGTACC
CGAGCGAGGAACGATTCCTTCCAGTGCGTGCTACTCTGTTGAACTCAGTGAGGAACTACCTTTTT
CACTCTATACATGCCTACGTTACTCGTCTGTGTCCTTTGTTCGCAACATGCCGTAGTTGCTCACT
GCACGAAAAGCACCGCAAATGTTTTACCATTCCGAAGAAGCACTGGTGACAGGGTGAGGAATAGT
AAGGGCTTGCTTCTCATGCAGGAAAAAACATGGCTTTTCTTTCCT



Found at i:851426 original size:21 final size:21

Alignment explanation


    Indices: 851402--851443  Score: 75
    Period size: 21  Copynumber: 2.0  Consensus size: 21

     851392 TCTTTACTTA

                                 
     851402 TATATAGAAAGAGGATTCCAG
          1 TATATAGAAAGAGGATTCCAG

                      *          
     851423 TATATAGAAATAGGATTCCAG
          1 TATATAGAAAGAGGATTCCAG

     851444 CTCAAGCCCC


Statistics
Matches: 20,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  21   20  1.00

ACGTcount: A:0.43, C:0.10, G:0.21, T:0.26


Consensus pattern (21 bp):   
TATATAGAAAGAGGATTCCAG

Left flanking sequence: Indices 850902 -- 851401
GATGAGTACAAGACAGACTGACTCAAGCGAGTACTTTCTGTGATGAGAGAGGAAAGCTCGACCAA
AGGGAAGCAGTTTGAGTGCGTGGTTTTTACACTTCTTGGAGCTTATTTCTAAGCCATGATCCTAA
CAGGTGGGCACTGACCTGGGGAGGGACTTACATAATAAATTTCATTTGGTAAGCTCTCTACTCGG
TGAATTCAACTCACTAACCTAAAGCGCAAAATTCCGGGTTGAATTGAAAGAAACCCACACTTCCA
AAGCCAAATTATTCTCAAGAAGGCTAAAGGTGAGAAATGGAAAACTTAACAGGCGGGTAAGTCAT
TATGCTACAGTAGGCATGTAGCAGTAGGCAGTAGGAGTCGAATGCTACTCCTAGCAAGGGCAATA
CCGAAAGCTAAGCTTGCGTTTCAGCCTGGCCCACTGGAGAGCTTATACCATAGACTCCCGAGAAA
TTAAGGTGTCTGTCGTCAGTCTATAGAGATTCGATTCTTTACTTA


Right flanking sequence: Indices 851444 -- 851943
CTCAAGCCCCTATTGTTTGCTCTTTCTTCATTATCATTCTTTTATTCCCTTTCCTCTTCTTCATA
TCTGACCCTGATCTTTCGCGAACAAGATGAAGCAGGGCAGGGCGGCCACCATTACCTTTGACCCT
ATTCACAGATTCTTCTAGCTATTACCTAGCATCTGTAGAGATTGATTTGTGGTACGAGCAATTTA
AGCTTGCCCCGTCTCTATAAGCTTTTCTTCTTGGTGCGCATTCTTACGCTTTTTCTTCGCATTCT
GACACTCTATCTTCCTGTAGATAGGAGAGGAGTCCACAGGGACGTATTTCTCCACCCCAGACCAG
AGATGCATTGCTTTCTGCGCAGCTAATTACCCAGAAATAGCGTATAAGACAAAAGAAAGGAATGG
ACATGCAAAGAACGGAATGGACATGCATTGAGTAAATTTATTCTTCTGAGCTTTTGTGGTGTATT
TCTTCCGGCAATCGCACTGGCGACGACTATTTATCAAAGAAATTC



Found at i:851845 original size:20 final size:20

Alignment explanation


    Indices: 851820--851860  Score: 73
    Period size: 20  Copynumber: 2.0  Consensus size: 20

     851810 GTATAAGACA

                                
     851820 AAAGAAAGGAATGGACATGC
          1 AAAGAAAGGAATGGACATGC

                  *             
     851840 AAAGAACGGAATGGACATGC
          1 AAAGAAAGGAATGGACATGC

             
     851860 A
          1 A

     851861 TTGAGTAAAT


Statistics
Matches: 20,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  20   20  1.00

ACGTcount: A:0.49, C:0.12, G:0.29, T:0.10


Consensus pattern (20 bp):   
AAAGAAAGGAATGGACATGC

Left flanking sequence: Indices 851320 -- 851819
GCCCACTGGAGAGCTTATACCATAGACTCCCGAGAAATTAAGGTGTCTGTCGTCAGTCTATAGAG
ATTCGATTCTTTACTTATATATAGAAAGAGGATTCCAGTATATAGAAATAGGATTCCAGCTCAAG
CCCCTATTGTTTGCTCTTTCTTCATTATCATTCTTTTATTCCCTTTCCTCTTCTTCATATCTGAC
CCTGATCTTTCGCGAACAAGATGAAGCAGGGCAGGGCGGCCACCATTACCTTTGACCCTATTCAC
AGATTCTTCTAGCTATTACCTAGCATCTGTAGAGATTGATTTGTGGTACGAGCAATTTAAGCTTG
CCCCGTCTCTATAAGCTTTTCTTCTTGGTGCGCATTCTTACGCTTTTTCTTCGCATTCTGACACT
CTATCTTCCTGTAGATAGGAGAGGAGTCCACAGGGACGTATTTCTCCACCCCAGACCAGAGATGC
ATTGCTTTCTGCGCAGCTAATTACCCAGAAATAGCGTATAAGACA


Right flanking sequence: Indices 851861 -- 852360
TTGAGTAAATTTATTCTTCTGAGCTTTTGTGGTGTATTTCTTCCGGCAATCGCACTGGCGACGAC
TATTTATCAAAGAAATTCATAAAGAGAGAGAATCAGACCCTTTGACTCACTTACTTAGGGCTGAC
TCACTGACTTAGGGGGAGGGAGTCCGCACAAGGCTAAACTTGCAAGTTTTAAGCATATAGAAAAA
GCATAAGTCAAGATCGAATCTGAATAATCTAATTAGTAAGGGCGAAGGACGGTGACCGCCTGCCA
CCACACAACAGTAGAGCTCTTTGGTGCCAACGCTTTATCAATAAAGGTTACTGTGAAGATTCGCT
TCTCTATACTACACAAGTTGAAAATAGAAAGAAAAAAGTGCTTTCAGTTATTATACTTCTTGATT
CTATGTAGATGGTAGAATGTAACTGGTAGAGCAATTAAGTCTTTTTAGATATGTAGATGGTAGAG
CAAGAAGTATAAGCCTATTTCAATGAGTGCTACTGGGGCATTCTG



Found at i:851992 original size:19 final size:19

Alignment explanation


    Indices: 851968--852004  Score: 65
    Period size: 19  Copynumber: 1.9  Consensus size: 19

     851958 TCAGACCCTT

                     *         
     851968 TGACTCACTTACTTAGGGC
          1 TGACTCACTGACTTAGGGC

                              
     851987 TGACTCACTGACTTAGGG
          1 TGACTCACTGACTTAGGG

     852005 GGAGGGAGTC


Statistics
Matches: 17,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  19   17  1.00

ACGTcount: A:0.22, C:0.24, G:0.24, T:0.30


Consensus pattern (19 bp):   
TGACTCACTGACTTAGGGC

Left flanking sequence: Indices 851468 -- 851967
TCTTCATTATCATTCTTTTATTCCCTTTCCTCTTCTTCATATCTGACCCTGATCTTTCGCGAACA
AGATGAAGCAGGGCAGGGCGGCCACCATTACCTTTGACCCTATTCACAGATTCTTCTAGCTATTA
CCTAGCATCTGTAGAGATTGATTTGTGGTACGAGCAATTTAAGCTTGCCCCGTCTCTATAAGCTT
TTCTTCTTGGTGCGCATTCTTACGCTTTTTCTTCGCATTCTGACACTCTATCTTCCTGTAGATAG
GAGAGGAGTCCACAGGGACGTATTTCTCCACCCCAGACCAGAGATGCATTGCTTTCTGCGCAGCT
AATTACCCAGAAATAGCGTATAAGACAAAAGAAAGGAATGGACATGCAAAGAACGGAATGGACAT
GCATTGAGTAAATTTATTCTTCTGAGCTTTTGTGGTGTATTTCTTCCGGCAATCGCACTGGCGAC
GACTATTTATCAAAGAAATTCATAAAGAGAGAGAATCAGACCCTT


Right flanking sequence: Indices 852005 -- 852504
GGAGGGAGTCCGCACAAGGCTAAACTTGCAAGTTTTAAGCATATAGAAAAAGCATAAGTCAAGAT
CGAATCTGAATAATCTAATTAGTAAGGGCGAAGGACGGTGACCGCCTGCCACCACACAACAGTAG
AGCTCTTTGGTGCCAACGCTTTATCAATAAAGGTTACTGTGAAGATTCGCTTCTCTATACTACAC
AAGTTGAAAATAGAAAGAAAAAAGTGCTTTCAGTTATTATACTTCTTGATTCTATGTAGATGGTA
GAATGTAACTGGTAGAGCAATTAAGTCTTTTTAGATATGTAGATGGTAGAGCAAGAAGTATAAGC
CTATTTCAATGAGTGCTACTGGGGCATTCTGGAAAGGTTCTCGCGGCACAACCTAATTGTTATCC
ATCTGCTTTCTTCTTTCTCGCAGGCTTCTTTTCTATGAATGAAGCTATAGATTCACTATCTTCTG
ATTTTCATTAGACCATTGCAATTACCGTAGGCAAGAGATGGAGTT



Found at i:856647 original size:21 final size:21

Alignment explanation


    Indices: 856621--856687  Score: 134
    Period size: 21  Copynumber: 3.2  Consensus size: 21

     856611 TGAGATGGAA

                                 
     856621 GAGGCGCCCATTCAACAAGAG
          1 GAGGCGCCCATTCAACAAGAG

                                 
     856642 GAGGCGCCCATTCAACAAGAG
          1 GAGGCGCCCATTCAACAAGAG

                                 
     856663 GAGGCGCCCATTCAACAAGAG
          1 GAGGCGCCCATTCAACAAGAG

                
     856684 GAGG
          1 GAGG

     856688 AAATTGGTGG


Statistics
Matches: 46,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   46  1.00

ACGTcount: A:0.33, C:0.27, G:0.31, T:0.09


Consensus pattern (21 bp):   
GAGGCGCCCATTCAACAAGAG

Left flanking sequence: Indices 856121 -- 856620
GGAACAGCTCGCAAAATTTCACCACCTTACCTACTTTATTGCCCCTAACTCTGTCCTGTACCTCT
ATTGAAACAGAAGGCTTTCATGTTATTTTATCAATTGGTTATTCCTCTCTTTTTGTATCTCTTTA
TCCAATTTCGGTCTCGATTAGTTTACAAGATTGAATGGCCAAGTCATTGAAAAGCCCTTTTTCGA
TTGTTTGCGGAGAATGTTGAGCCGGGGTAGAGGGTGTGTGTAGCCCATGGTAGATTCCAGCCGAG
AAGACCAGTAAAAGAGCAGGATAAAGAATGTCATATTTTTTGATCTGCCTAGTCCTCAAGATCGG
TTGTTGGTCTGTTGTTCGGTGCATTATTTTTCGTTGTATCTCACGAGTATGTCCCTCTTTAGTAC
CTGTAATGAAAGCTGCCCTACTTTGGCATAATTGGCACTCATCTTTGGTTGGCTTTTTTCTTTAC
CTTTTAGAGCAGGACCTCAATCTGCCTCCCGCCCTTGAGATGGAA


Right flanking sequence: Indices 856688 -- 857187
AAATTGGTGGGGATAATGATCCAAATGAGGAAAGTACCTTATTATTACAGGGAATTCGACAACGA
ATAGAGCAGTATATTAATGTAACAGGAAACATCCTTGGTTGGCCGGTAACGGCAGAGAATCGAAC
GCAAGCAGTCAATACCATAGTGTACGGCTTGGAGCTCGATACCTTCCAGGACGACCTACCGTTCC
TACAAGAATTCCATGAGCGCATCTCAGCTAATCCAGATCCAATGATTTGGGAACTAGTGAAAGAT
ATTTACGAACCCATGATGCAGATGGACGAGGACCAGAATAGCAGCTCAGGTAGCAACTGAGCTGC
TGAATGGGAGTCGTTCTTTTGTATCATAGGTTTGTGTTCTAGTTCATTTTGGGTATAAGAGGATT
AGGAGTACTTATTTGGTGTGTGTAGTTTCTCTGTCTTCCTGGGAAGGCAAATAGAGAGTACGAGG
CCGCCGTAGGGCAGACGGCGGGAAAGAGGAGTGGGTATGTGGGCC



Found at i:884617 original size:30 final size:30

Alignment explanation


    Indices: 884581--884641  Score: 122
    Period size: 30  Copynumber: 2.0  Consensus size: 30

     884571 ATTGCGCCGG

                                          
     884581 ATCCCCTTTGACTAGGAAGATCAGAATAAA
          1 ATCCCCTTTGACTAGGAAGATCAGAATAAA

                                          
     884611 ATCCCCTTTGACTAGGAAGATCAGAATAAA
          1 ATCCCCTTTGACTAGGAAGATCAGAATAAA

             
     884641 A
          1 A

     884642 AGGATCGAAC


Statistics
Matches: 31,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  30   31  1.00

ACGTcount: A:0.41, C:0.20, G:0.16, T:0.23


Consensus pattern (30 bp):   
ATCCCCTTTGACTAGGAAGATCAGAATAAA

Left flanking sequence: Indices 884081 -- 884580
CGAAGGGTTTTTGTGAATAATGGACTGGTCAGCATTACTCATTGGAAAGTTTCCCATGGTGATCT
CATATCTTTTCCTGAAAATGAGGCGAAAACCCGCAGTGAAGAAATAAGGAGATCTTTCTATATCG
ACATATTAGTTGGAAAAATCATAGGAAAATGCTTTCCGGGCATAATTTGGAGAAGAACCAAAAAA
GAATGGTTCCGCTTACTAAAAACAAAGAGGGGGTGCCGCCTACTACTCAAATCCTGCTTTTTGAA
AGAGTTGCGTTCTTCTATGCAAGAAGAAGACAACAAAAAAATAAAAAAGAAGTTTGGATCCGAAA
AAGTCCGCTTAGGAAGGTCCTTCGCTGAGCACAACAGAATGAAGAGGCATTTTTTTCATTTAAAA
TACTTCTTATTGAAGAAAAGGAAGGATAAAAAAAAATCTCTTTTTACTAAAAAAAGAAGTCCTTT
TGTTTCAAAGTCTTTGTTATATAAAAAATCGACCTATTGCGCCGG


Right flanking sequence: Indices 884642 -- 885141
AGGATCGAACTACCTACTCATTATTCGGAGGTGAATCATAGAACACTAAAAGCGGTGGTATCTTA
TGGACCTAACATAGGTTACATCCCTCACGACATAAGATTGAAAGATCTCAACCTTCTTCTTTGGA
GCGGAAACGGACGTGGTCAAAACATATAAGAAAAGAAAGGCATAGTCGCTCATAGGGGCATATCT
CTCCGGATGGAGGAGGAGAGTCTAGATAAATTTATAGAGAGTTCTATCTATATTATATCTCCTTG
GAGAGAAATACAGATAGGGATCCCCAACAATATAAATATCTGGAAAATGTGCACTTTTTTACTCT
TTCTTGATTTTATTAGACTTTTTGAAAGGAAACATCGTTACTGACTGAATTGGTCGGAGCGTAGA
TGAGCGAGCAGAGCCCAGTAAAGAGGTCAGACCGTCATAGAGCAGTCGACTAACTATAAGTATCA
GACTTATGGCCTGAGAGAAGGCAGTCTCTCTCGCGAAACATGGCC



Found at i:903793 original size:14 final size:14

Alignment explanation


    Indices: 903774--903804  Score: 62
    Period size: 14  Copynumber: 2.2  Consensus size: 14

     903764 GATAGATCGT

                          
     903774 TATTCATTCCATAC
          1 TATTCATTCCATAC

                          
     903788 TATTCATTCCATAC
          1 TATTCATTCCATAC

               
     903802 TAT
          1 TAT

     903805 AGTGAAAGAA


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   17  1.00

ACGTcount: A:0.29, C:0.26, G:0.00, T:0.45


Consensus pattern (14 bp):   
TATTCATTCCATAC

Left flanking sequence: Indices 903274 -- 903773
ATTTATACCCTTAATGGAGTACTTTATGAGCTCAAGGCTTTTTATACGAAGAGGACTCGTATTGT
ATTACGATATTCATTGAAGCTACTTCCCGGAAGCCTTTCTAATCTTGCGCGTAGTCTATGTCCTT
CACTAGGTATCAAGGGTGATGTAGATCATGAGTCACAGCTAGTCTACTTAGTCAATAAAAATATG
ACTTTGATTTTATATGTCGAAAATAAAATGACCATAAAAAAAATAATACGTAACATGGGTAGATA
GAAACCTTCAGAACATTCCTTATATGGTCCCCAACATACACCATGCAATGGCATTTCAAAAAGAG
TCAAAAATCAAATCGAAAGAAATCACGCAAAACGAACAGCGGATGAAGTAACTTGCCGAAGCAAC
GCTTTAAGAGCTTGTTCGATCCACTCTGTACTCTTTTGTACCTAACGCTTCCAACTTGGGGAGTC
CTTAGGAGTTTAGTACAAGGGACTCTAATAACAAAGATAGATCGT


Right flanking sequence: Indices 903805 -- 904304
AGTGAAAGAACGGAGCTTTTCTTTATTCAATTCTAGAAAAAGACTCCCCCGTAGCCCACTGCCCT
AGCAATCTGTCTGTGCGATAAAGTCCCTCGCTAGTTGGTAGATAAGTTCCTCGAAGAAGCGATGC
CCTCGATTCCCCGAATATTGCCGCGTTTACTTTAAGTACCACATTGCTACGGATTCTTACGAGTA
TCGTTGCAATCTACTTACTAATCTTTCGCTATACAGTATGTTGATACGAGCAGACTATTACGAAA
TTTCGTATAGAAAAAAAGGATTTTTGGAAATCAAAGTAATGTTAAAGTACTGGCTTACATCCACT
GTCCCCTTGAAATTCTTCCTTCTTTACCCTACACCTATTATCTAAAGATCGCCCCCTTTCGCTTG
AGAAACTAGTTTGGTAAAGTATGATTTTCTTTATTTACGTAGTCAAGTAAATAGTCATTCATGAA
ATGAATGCGAATTCCCTTATTCTCATGCCCCAAAAGGAACATGAC



Found at i:905987 original size:19 final size:19

Alignment explanation


    Indices: 905963--906001  Score: 78
    Period size: 19  Copynumber: 2.1  Consensus size: 19

     905953 GGGAGGTAGC

                               
     905963 CCTTAGCTGTTGGTGCGTT
          1 CCTTAGCTGTTGGTGCGTT

                               
     905982 CCTTAGCTGTTGGTGCGTT
          1 CCTTAGCTGTTGGTGCGTT

             
     906001 C
          1 C

     906002 ATTGCAGGGA


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  19   20  1.00

ACGTcount: A:0.05, C:0.23, G:0.31, T:0.41


Consensus pattern (19 bp):   
CCTTAGCTGTTGGTGCGTT

Left flanking sequence: Indices 905463 -- 905962
CTTCGGCAGATCTACCCCCAACCCTACACTGACTGCCTAAGGCGACCAAACAAGTGCTTCCACAC
AGCTGTTAACAAGTTTAACCTTAGGGGCCTCCTCCCCAACCTGAACTTTGTCTCATGTCTATGTC
CCGAAGGGCAGCTGTCATTCCGTATTTCCGAGTGACCTAATTGAATAGACAATTTCTGACGATAT
TTCGATTTCATTCCATAGGACTCGCTCGCTTTTGAATACTGATTTTATATCCTCTCTATCCTCTT
AGCGAGGCTGTAATAACCACAAAACTGGCCGCTAAGGTCGCCTTACTTTATTAGTATTTCCTCCA
CCATATCAGATAGATTACTTCTCGTGGACTAGCTTCCTTTTCTACGTTGTTATTCTTAGGGATCT
TCTTTATCCGAACCCGGCACCCATTCTTCATCCTTGCTCCTACTTTAACAACTATTTCATTCTTT
TAAGGGACCTGGCTTCTGTTTTATGGTAAGTACTGGGGAGGTAGC


Right flanking sequence: Indices 906002 -- 906501
ATTGCAGGGATGGTAATTGATAACAACAGGATTCCGAAACCAATCGACCATTAAAGAATTCATCC
AATTTTGGAACCTTCGAAGCTGCTTGAAGCCTTTAGGGGGCCCTCTCTTTCGCACTTTAAAGAGT
GTGTTTAAAGGGATGGATGTGCCCAGATCGATCTATTCAAATCAAATGCAAATAAAGAAGGGTCA
TATGACGAACTAACCATATCTATTTCTTACCCTGGCCTAGAGGTGCCAGGGCATATCCATTACTT
ATTATAGTCATTTGCCTCAGGTGAGTGTTCCTTGTTTCGAAAAGCGATATCGCGTTTGAGATTAT
CATTTTCCTCCCGGAGCCTTTTCAGTTCTTCATTCTGAAAAAACTCCAGATGATCATTAGTTGTC
TCATAGCGATGGGTAGTGAGGCTCACCCCCTTCAGCCATTAATAATGTAAATGATGTGTTATGAC
CACGCCGAACAATTGCGTATTACGCGTGTTCGACCCCACTAAGTC



Found at i:912215 original size:33 final size:33

Alignment explanation


    Indices: 912178--912242  Score: 112
    Period size: 33  Copynumber: 2.0  Consensus size: 33

     912168 TAATCAAGCA

                   *       *                 
     912178 ATAGATATAAGGCTATTAGTGATGAATTAAGAG
          1 ATAGATAGAAGGCTAGTAGTGATGAATTAAGAG

                                            
     912211 ATAGATAGAAGGCTAGTAGTGATGAATTAAGA
          1 ATAGATAGAAGGCTAGTAGTGATGAATTAAGA

     912243 AATATAAATC


Statistics
Matches: 30,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  33   30  1.00

ACGTcount: A:0.43, C:0.03, G:0.26, T:0.28


Consensus pattern (33 bp):   
ATAGATAGAAGGCTAGTAGTGATGAATTAAGAG

Left flanking sequence: Indices 911678 -- 912177
CTGCCCGTGGAACCAAGTAGCTCGACTTCGTGTGACGTGCTTGCTTTTGTCAATGCCATAGAGCG
GGATCGCAAAGGATGGATAGAAGCTGCCCCGCACTCCCTGGAGTTTGATTGCTTCAAAACTGTAG
TTACTCGCTGGATTGAAGCTACTACCGCGAAAGCCTATAGCGCCATCCCCCAGCCTCCCGGCACC
AGTTAACCGTTTCGTGTTGGCGGAACTGAACGAAGTTCATATTGATTGATAATGGATTGATCAGG
AAAGAAGGCGAAATGCATGAAAGATAGAGATAGAGATATAGGTAGGAATATTGCTATCTTTAAGC
CATGTGCAGATCAGGCGATCTTTAAGCCATGTGCAGATCAGAGAGTAGTGGACGTCGCGCAGCTC
TGTTAAAGGGATTCGCCTAGGCAGTGGAGGGATTATCCAGTATTTCGAACAGAAGAAAAGATTCG
CATAGAATCGATGTTTCAAGCTATGAAACAGAGGATAATCAAGCA


Right flanking sequence: Indices 912243 -- 912742
AATATAAATCCATAGATATAAAAATAGGCATTGCATTCTCTAGATCTCCTCCTGTAGGCAGTAGT
ACTATCTCTTTCTTTTACTTTCAGAGACCACTTCTCACTTTGTAAACGTAAACACCAAGATCAGA
GAGATGCTCTGGCCCTATCGCATATCTTTGCTTCCTTTGGTTTGGGTCTAGTTAGTGATGAGCCT
CCACAGGATTCGAGATGGCTAGCTTTCTATTGACTTGACTGTGGTGTGGTACTTCCTATGGGTGT
GCCAGATTGGATTTCTGGCTAGCTTGCCTTGCTTTCTCAAAGAAATCGATCTTTCCTTGTTGGTA
CTAGGGCAGGGCTGAACCCACCCCAGCCAGCGGGAAATCATTACTTTATCTGTTTCTGTGCTCAT
GAGAACTAACAACAGATCGTCACCAGCGTCTGCAAGTACACAAAGGAACTGCTGAGTTATGTCAA
AGCCGGTTTCATCCCTTGGTCATTATGTGAAAGTGTCATAGTCTA



Found at i:916521 original size:24 final size:24

Alignment explanation


    Indices: 916474--916521  Score: 62
    Period size: 24  Copynumber: 2.0  Consensus size: 24

     916464 AACCAGATTC

                               *    
     916474 CTATTCCACAAAAGCCTATGAGCT
          1 CTATTCCACAAAAGCCTATCAGCT

                            *        
     916498 CTATTCCTACAAAA-CGTATCAGCT
          1 CTATTCC-ACAAAAGCCTATCAGCT

     916522 AGTCCTTGCC


Statistics
Matches: 21,  Mismatches: 2, Indels: 2
        0.84            0.08        0.08

Matches are distributed among these distances:
  24   15  0.71
  25    6  0.29

ACGTcount: A:0.33, C:0.29, G:0.10, T:0.27


Consensus pattern (24 bp):   
CTATTCCACAAAAGCCTATCAGCT

Left flanking sequence: Indices 915974 -- 916473
TCCTCACAACTACTTTACCGTGGATATGCCTATTCAATATGCCTTTCTAGGTTAGAAGCTGCTTA
CCCTTATAAATAAAAAGGCCTAGCTAACGCCCTAAACCTACTCTACGTTATGCCTATTTATATCA
CTCACTAGCAGAAACCCGTTCATGTCTTTCCAAGTACTATTTTGCTTACCTTTTATACCTACTCA
CGTGCTTGGCTACTACTAACACTAAAAGCTAGCAGCTTACCTTACGTCGTCGGTATCAGGGGTTG
TTACGCATACAGCTTCTCTTGCATCCCTAGTAACTAGCCGCTTCGCGCCTCTAGCAGCTTACCTT
GTTTCTAAAAAGACTTATCCGGTGCATAAACCCATGTGCCCAAGCTTCTATACTTGCCTATTTCA
ACGCTATTTCGGTGCTACGCATACACCTTTTCAACAACTACTGACCTAGTATAGTAGCTTACCTT
TGTGACTTACCTATTTTTTACGTATAAACCCGTTCAACCAGATTC


Right flanking sequence: Indices 916522 -- 917021
AGTCCTTGCCTAGCTCTACAAATACCTTGATGACCATGCTCCTAACAAGCCTAGCTATCCCGTGA
CAAGCTACTAAACCGGTACGTACTTCGAAGAAATATGCATAAACACCAACTATGCCTGTCTCCTC
CTAACACACCTATGCTACTAGCTCCTTGCTATGCTAGCCTAAGAAAGATACCTAACCTTCCCTAT
AACTTTAATATACCCGCTTCGCGCCTTTTGCTTGCATCTCTTGGCGTTTGGCCATTCATGCAACG
CTTCGCGCCTATTTATTAAATACGCATAAACCGGTGACTGCCTACTTTGAAACGTATTAGACTCA
CTTGACTTGACTTATCCCATGCTTTGTACTTGACTTCTCTTATAGCGTATACACGTTTCATAAAG
CATACGTTATATATATGGTTATGCTGATGCTAGCAAGTTGAAAAAATTAGAAAGGGACGCAGATT
CCTTAGGCCCTTATTATTAATACTACTACCTACTTTCCGGGTAGA



Found at i:957284 original size:24 final size:24

Alignment explanation


    Indices: 957252--957300  Score: 89
    Period size: 24  Copynumber: 2.0  Consensus size: 24

     957242 CTCGATCAGC

                            *       
     957252 ACGAAGAAGACAAAGATAAAGGAA
          1 ACGAAGAAGACAAAGACAAAGGAA

                                    
     957276 ACGAAGAAGACAAAGACAAAGGAA
          1 ACGAAGAAGACAAAGACAAAGGAA

             
     957300 A
          1 A

     957301 AGATGATGGA


Statistics
Matches: 24,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  24   24  1.00

ACGTcount: A:0.63, C:0.10, G:0.24, T:0.02


Consensus pattern (24 bp):   
ACGAAGAAGACAAAGACAAAGGAA

Left flanking sequence: Indices 956752 -- 957251
GAAGTCAAGACTGGTTAGAAGCATAGAAGCAGACGGACGGGGATGCAATCAAGGTGAAAGTCCAG
AGCATCACTCATATCTTATTTTTTAATATAAGCTAGACGACTACTCCTTTCTTAGCCTATAACCT
CTCAATACCTAATGTTTTGGATATCTGCCTTAATAAGCGACTCTTGAATGAAAGGGGAGACCCAG
CGCAGGTTCCCTCCATTTGCTGGTTCTAGGCTATAGTGAAATAAAATACTTTAAAATCCTCTGGT
AATCCGCGGTGGCCAACCACAAGTTGAGCGAGCAAACGATTTATCGACAGATCAATAAGAGACAG
CGATTGGTCTGGCGTGAGAAAGTACCAAAAGAGCAGGCCACTGTCTACATGATACGTGTAGAAGA
AGAACCCGAAGAGTATGCTACTGTGTATATGGCTAACACTAGATCTAAAAATGAGAAAAATGAAC
AAGATGAAACCTCTACCAGTGGACCACAAGGGCCCCTCGATCAGC


Right flanking sequence: Indices 957301 -- 957800
AGATGATGGAGCTTCTGACAAAGATGATGGGGTAGCTCGGTTGAGAAGAGAATTGGAGCAAAGAG
ACCAACAAATAGCCGCCTTGCACTTCTAAAATGGGAATGCCACAAGATTATGCATGGAGTTGCAT
AACTTTTTAGCCGAAAAAGGTTTAATTGCCGAAATGGCTCATGGAGAGACTGGCCCCACTGTTGG
TAACTCTAGTGCTTCTAAGCCCGATTCCGAAAGGCCAGGAAAGAGTGCCTCTAAAGCCAAGACAA
GCAGTGAGAATGCCAAGCATGCATTTGGAAAAGAAGAGGAAGGACCAAGTAGCACCTCTTACGAG
ACTCTGGGATTGTCAGGGGTGACAAAGCAGGAATTACAAGAGATGAGAAACCGGCAACTACAAGC
TGCGGGGGGCACCTCGTTCGTCCTATGAGGCGATCAGGGAGACCATATCCCAAAGAATATGACTC
CATAAGGTACCCGGATGGGTATGTCATCCCTAAGTTAAGGATGTT



Found at i:990176 original size:20 final size:20

Alignment explanation


    Indices: 990139--990178  Score: 62
    Period size: 20  Copynumber: 2.0  Consensus size: 20

     990129 TCTTTACATA

                       * *      
     990139 CTCATTATCTATTTCTATTT
          1 CTCATTATCTACTCCTATTT

                                
     990159 CTCATTATCTACTCCTATTT
          1 CTCATTATCTACTCCTATTT

     990179 TAGACATTAC


Statistics
Matches: 18,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  20   18  1.00

ACGTcount: A:0.20, C:0.25, G:0.00, T:0.55


Consensus pattern (20 bp):   
CTCATTATCTACTCCTATTT

Left flanking sequence: Indices 989639 -- 990138
GACTGAACATGGCATGTCTGACCCAAGGAAAGCACTCTGGCATTGCTACTTCCTACCGCTCAACA
ACTCATTACGAAATACTCATGCTCACGCTACCTTAACTTCTTCAAGTAGCTACCACAATGTACTG
GTATGGGGAATTACTGTAACCTATCTTTGTTGATACACTAGCCAAAAATAAGCGCTTACACCTTA
TAGAGATCCACTCTATCTTATAGACGGAAAATAGAGAAGAAAATCTGCCATACATATATATCCAA
AGTGTTGACGAGGCTTTCACCTTAGATGCGAGGGAGGGGTGAGAGATTCAAGTTACCTGTTCGTC
AGTGAAATATCTTCTCACACATCTAATACTTACTCGTGGAATAAAATATTATTCTAAATTTACTG
CCTCAGAAGTAGAGATCAGTACTCAAGTCATGAGCATGCTACTACTGGTGTTGCTCTTGACTACA
TAGAGAGCCATACCTCTATTATTATGTTCGCCTACTCTTTACATA


Right flanking sequence: Indices 990179 -- 990678
TAGACATTACCTACATTAGTGTCCACAGATTAAAACAGAAAGAATTCGATACCCCCACAAGCAAT
GGAAAACGAATCTACGTATGCTTAGTTTTCTGGCGAGCAAGGGCTTCGATTACTGGAATCTCTCT
AATTTCACGCATTCGTAACCAATCCACAAGAGAATCGTACTCACATCAAGGGAGATTAGCTTAAA
TAAAGAAATACTGCCCAAAGAGACAGTCAATGGGATGTTCTAACGAGCTGTTCTTAGTTGAAGTC
TCGTTGATGCTCATATTATTCCTTCGCTAGCTGATAGAAACGTTGATAGAATTGTGGCTTAATTG
TCACTTATTTAGTCGTCTGGCAACAATGTAAAGGAAGAGGACTTTATTCTTTTTACGAGGCTGCT
TACCTACTCCCACCTTTACCTTTACCTGCTTAGCGAGTTAGCGAACGAATTTATTGCACAAATTT
CAATGGACTTACCCTGAGTTAAGCTCCACACATAGCAATATTAGG



Found at i:990779 original size:16 final size:16

Alignment explanation


    Indices: 990760--990791  Score: 55
    Period size: 16  Copynumber: 2.0  Consensus size: 16

     990750 TAATTCCAGT

                            
     990760 TTTTAATCACACTATC
          1 TTTTAATCACACTATC

                 *          
     990776 TTTTAGTCACACTATC
          1 TTTTAATCACACTATC

     990792 AAGGACAAAA


Statistics
Matches: 15,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  16   15  1.00

ACGTcount: A:0.28, C:0.25, G:0.03, T:0.44


Consensus pattern (16 bp):   
TTTTAATCACACTATC

Left flanking sequence: Indices 990260 -- 990759
TATGCTTAGTTTTCTGGCGAGCAAGGGCTTCGATTACTGGAATCTCTCTAATTTCACGCATTCGT
AACCAATCCACAAGAGAATCGTACTCACATCAAGGGAGATTAGCTTAAATAAAGAAATACTGCCC
AAAGAGACAGTCAATGGGATGTTCTAACGAGCTGTTCTTAGTTGAAGTCTCGTTGATGCTCATAT
TATTCCTTCGCTAGCTGATAGAAACGTTGATAGAATTGTGGCTTAATTGTCACTTATTTAGTCGT
CTGGCAACAATGTAAAGGAAGAGGACTTTATTCTTTTTACGAGGCTGCTTACCTACTCCCACCTT
TACCTTTACCTGCTTAGCGAGTTAGCGAACGAATTTATTGCACAAATTTCAATGGACTTACCCTG
AGTTAAGCTCCACACATAGCAATATTAGGTACAAATAAGAAGATAGTAAAAGGCGGCTTACCCTC
CCTTAAATATGCAAGGCCAATCAATTCGTCTTTATTAATTCCAGT


Right flanking sequence: Indices 990792 -- 991291
AAGGACAAAAATAAGCAAAAAAGGCATTCCTTCGTTTATGAAATGAAACAAAAAGTCTGTCTATA
TGATCACTCGTTCGAAGTTGAGCTTAGATGAGACCGGACCATAAATAATTAACATCTATAGTAAC
GTTTTTCACTGTTCTAGTTTGCTAGCACACTTACATAAGAACAATAAGTCTGAGTTAGGCACGCC
TAGAAATTAAATTAAGGCGAGAGTTAGGGCGTCGTCTTTGCATGCAGCACTCTCTGATGGAAGCA
CTGCTCGCTCCTAGATGCCAATATCGGATTAGCTAGGCGAGTATGGTGACAGCGATCACTACAGA
CAACCGCAAGCGTCTCGGTAAGCGTGGCAGCGACCACTCGGCTACTTAAGCCAAATGCTCACCCA
GCTGTTATCATTTAGCACTCTAGTGCAGATGGGTCATGCACGTCGATATGCCCTTGCCATGCAAG
AACCATCTGGTCCTGTTTGTACTACGCCAGATAGGATAGTCCGGA



Found at i:1004641 original size:21 final size:20

Alignment explanation


    Indices: 1004600--1004638  Score: 69
    Period size: 20  Copynumber: 1.9  Consensus size: 20

    1004590 CTACGCCCCT

                            *   
    1004600 TTTTAAAGAAGTAAAATAAG
          1 TTTTAAAGAAGTAAAAAAAG

                               
    1004620 TTTTAAAGAAGTAAAAAAA
          1 TTTTAAAGAAGTAAAAAAA

    1004639 AGTAAGTAGC


Statistics
Matches: 18,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  20   18  1.00

ACGTcount: A:0.59, C:0.00, G:0.13, T:0.28


Consensus pattern (20 bp):   
TTTTAAAGAAGTAAAAAAAG

Left flanking sequence: Indices 1004100 -- 1004599
AAAGGCCTGCCTATCATTGCTTGGGCCACACTTTGAAGTGAGTGTTTTCCTGCCCATTTGATTGA
TTTATTTAGCTAGCTGTGTCGATAAAGGGTCGGCCCTTACTGAAGACAGTGGAGCAAACCTGCTG
GGGGCGGTATTCATTTCCAATTTGTAAGTGACTTAGAGCCCTGGCTTTTAAATCCCGTATATTTG
CTTTGACATTTAACCTCTAAAGAAGTAAGTCCAACGCGGCCTTTCTGACAGAATAGTACGTACCT
ATATATAGTATAGTTCATTGACTCGTTGTCCTAAGTGAGTAGGAAAATTTACATACATATTGATT
GGAAGAAGGCGCGTTGCAGGAAAGACTGGACCGAGTGTGTACGACTCTGAGAACAGTGAGAGATA
TAATTAAGAGTGAGTGATTTGAAGGGCCCTACTTTTTTGATACATTGTGTGTGACTTTTGATTTC
CACTCATTGAAATTTATTTCCTTTTTCATACATCGCTACGCCCCT


Right flanking sequence: Indices 1004639 -- 1005138
AGTAAGTAGCGGGCTTCCTCCGAATATTATATTGCTTAGGGAGGGTCTTCTCTAAAAAACAGGGT
GTTACTCCCGTTTGTTCTTGTACAGACTGAGGCGCGAAGCGCTTTCCTTTTAGCATTTCCTTTTT
TCTGGAATCAGAGGAAAGCACGAGTGTTTAATGGACTCAGAGTCAGGAGGAAAGCACCACGTTGT
CATTTACCCCTAGTGGATATTCCAGGTAGAGCACTAAAGTCTAGTTCATCCCCTGGCATTTCCAA
TTGCACTTCTGACTCTAGCTAGTCTTTTTATCTAGATTAACGTACAAATAGCTATTCGTAAATAT
CTGCATTTTAGAGAATTGGCCCTAGCCTAGCTTTTTACTATAGGGCGGCCGGGCTTTATCTTACA
TGGCTTCGTGGAACATGCTCATTCAACGACATAGAATTCTTTAGCATTTCTTTTTTTATTCGAGG
CTATAAAGTAGAGCTTTATTTCTATCAGAAAGAATTATCCATAAT



Found at i:1005840 original size:23 final size:23

Alignment explanation


    Indices: 1005814--1005859  Score: 83
    Period size: 23  Copynumber: 2.0  Consensus size: 23

    1005804 GTTGACTTAG

                            *      
    1005814 AATAGCTACCCATATTGAGCTCT
          1 AATAGCTACCCATATTAAGCTCT

                                   
    1005837 AATAGCTACCCATATTAAGCTCT
          1 AATAGCTACCCATATTAAGCTCT

    1005860 GTTTCTAATG


Statistics
Matches: 22,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  23   22  1.00

ACGTcount: A:0.33, C:0.26, G:0.11, T:0.30


Consensus pattern (23 bp):   
AATAGCTACCCATATTAAGCTCT

Left flanking sequence: Indices 1005314 -- 1005813
TTCATACTTTTGCACTCTCTTAGCGCCCTCTTCTTTTTTCCTGTATAATTCATCTCAATTGTGAA
GAAAGGTGTCCTTACAGAATTACAGTGTGTGATCAGAATACACAAGCTAGAACGTTGTTTCAGAC
AGCAAACATATAGGTAGCTTAATCACTACACTACATCAAAGAAGCCAAGGGCGTAGCAGTAACAT
AAGGGTTCCAATGCGAATAGGGCACTCCAAAAGACATCTCCTAAATCGTGTGTTTGGAGGTTGTA
AAGAAGAAATGTTTACTCAGTAAGGTAATTTATTCAGCTTATCACTACTCTTCTTCAGCTTATCA
CTTTGGGCTGTGAGGGACGCTTTTTGTCTTTTTCATGTAAATAGCATACATCAGGCAAGCAAGCA
ATATTCGTCTATGCCAGTGCTATAACATCGAACCTTCTTTGAATACATACTAAAGAATGCTTTTT
TGTTGGCGCTTAACCATTGCCCTTTATACGATTTAGTTGACTTAG


Right flanking sequence: Indices 1005860 -- 1006359
GTTTCTAATGCTTCCACCCCGCTTAACGATCAACTAAACCATTACCCGAAGAAAAAATGCTTGCG
AAATACATGACTTATGGTGTCTTTGAATGGGAAGACTTTATTTCCCCAGGGACCAGTAACGCTAA
GATCTTCTGAACTAGGAAAAGGCTCCTCTCCTTCGAGTGCTTGGAATACACCCACCTGCTTTGAC
TCGTATCATAGAATAAATTGTCTCAACTTGAACTTTATGTATGGTGCTGAGAGCAGCATTCTTGA
GGATGGTTTTTTTTTCTTCCTTATAAAAGTAGATTCCCGAAAATAAGGACAATGCTTATGATGGT
GGAAACAATGATGATGATGGTGATGGTGATAGCCGCCCGTCTGGTAATAGTGATGGTGATGCTGG
GTCTAGTCAAGATGGAGGTGATACCGGTGATGGTAATGGTAAAGATTAAATTCTCCGAAGCAGTT
CAACGAGACCTTCAGGGAGACAACTCCTATCCTTTGTATCGGAGG



Found at i:1020329 original size:19 final size:21

Alignment explanation


    Indices: 1020290--1020329  Score: 57
    Period size: 21  Copynumber: 2.0  Consensus size: 21

    1020280 TACGTACGGT

                            *    
    1020290 CACTACACACTATCTATTATG
          1 CACTACACACTATCTAGTATG

                                 
    1020311 CACTACACACT-TCT-GTATG
          1 CACTACACACTATCTAGTATG

    1020330 TAAGTAATTT


Statistics
Matches: 18,  Mismatches: 1, Indels: 2
        0.86            0.05        0.10

Matches are distributed among these distances:
  19    4  0.22
  20    3  0.17
  21   11  0.61

ACGTcount: A:0.30, C:0.30, G:0.07, T:0.33


Consensus pattern (21 bp):   
CACTACACACTATCTAGTATG

Left flanking sequence: Indices 1019790 -- 1020289
GGATTTGCGGCATTTAATGAAGTGAAACGCAATTCCTTCCTAACTGGAGGAGCAAAGGTGATGAG
TCATATAGTTGAAAAAGGTTTAGTTAATGAGAAATTCTATCAAAGCACTGAACGTTGAAATAGTT
CGGGTTCCATTAAAGCAAAGTGGACCATGAAAGCCATGAGAAGAAGAATATGGAGGAAAATATGT
CTGCCAACGAAGGAAGGGAAGGAGTTTTTTACTTGTGGTGCGTAGGACCGAAGTGAATACATGTG
GAGTTAGCCAGAGTTTGTTTTCCATCCGGCTTTTCTTCTTGGGTTTAAGAAAGAAGCCCGCCCTA
CCTAAGCTTTTCTTCCAAAGAAGGTAGAGCTTTGTAACTGTCTCTTGCTGTTACGTACTGAGAAG
GAAGGTCAACCAACTATCTATTTAGTGCAACCGTTAAGATAGATAACCTCGCTTTAAAAAGCCAC
ATCTTCTTCGCTCGCTGCTATGAGAATAAGTCATTTACGTACGGT


Right flanking sequence: Indices 1020330 -- 1020829
TAAGTAATTTCTTTCGAGTTAGCTTCCGTTTGATTGACAGCCTACTGAATTTCAGGGAGAGTCAG
TCAGTTCGAGAGGATGAGCCTTTATTTAATATAGCCTGCAAGTGAGCCTGCCTCCCTCATTCATG
GGTAGCCTTTTTCGGATAGATAGTAAGGTTCATCGCCTACTACGCGCATTAGCTCATCTACTTGC
TAGAGGTCCAAAGCTTGCTTGATGTCCTTCCTTACTTCATTAATATTCTTTCTTAACATAACTAT
ATATAATGCGCAAAATCAATACGCAAAATACAGAGGCGGTATCTTATGCCATTTTGACGGGGTTT
CTTACTTTTTTCACAAAAAGGAATGCGCTCTTTAAGCATACACGTCAAACTCCACTTTATAAGTT
CTTTAATAAACTACTTGGGTGAACGAGAAAAAAAACCTAACTGAAACACGGAATTCTTGTTTTCT
CGCATAAACAAACAAAGCTACTTTCCTAGCGCGACAGCAGAATAA



Found at i:1022504 original size:24 final size:23

Alignment explanation


    Indices: 1022471--1022523  Score: 97
    Period size: 24  Copynumber: 2.3  Consensus size: 23

    1022461 CGAGTGACAA

                                   
    1022471 CAAAGGTAGTTCCTCACTGAGTT
          1 CAAAGGTAGTTCCTCACTGAGTT

                                    
    1022494 CAAAGAGTAGTTCCTCACTGAGTT
          1 CAAAG-GTAGTTCCTCACTGAGTT

                  
    1022518 CAAAGG
          1 CAAAGG

    1022524 GCGAACTTAT


Statistics
Matches: 29,  Mismatches: 0, Indels: 2
        0.94            0.00        0.06

Matches are distributed among these distances:
  23    6  0.21
  24   23  0.79

ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26


Consensus pattern (23 bp):   
CAAAGGTAGTTCCTCACTGAGTT

Left flanking sequence: Indices 1021971 -- 1022470
CACGGCTGATTAAGCACCAATTCTTTCATGTGTGCTACTGTGCACCAGTGGCGATCACTATTCTC
ATACACTGTCGCGTTATCATCCAACCGACCAGCCAAAACTTTATCCAACCAAGAAGAAATCAATT
GAAACACTGGCTTGCTTACCACATTGCGGCCTGGAGAGTTTCTAAGCACGCCCCAAATTGGATCT
GCGGGCGGCTCGTCAGCATATGTATCAAAGAAAGTGCTAAGTTCGAAGCACCAGTCTTATGTTTT
CGGATGAAATCGCATAGGAGAGGGTCGATTAGGTTCAGCCAACCTACGTAAGCAATCATGGAATT
TCACCTTCAACTTCAAAATCTGGTTTGTGGCTGGTTGGCCTTTCCTTGCCCCTTTGGAAAACATC
ATCGTAGATAGCCTTATTGTAGCGCTCGATCAAGTTGTTTTACTCACACGGTCGGACGTCACTTT
CTTTGTTCGTAACAGACGATACACTACTAATGCTGCGAGTGACAA


Right flanking sequence: Indices 1022524 -- 1023023
GCGAACTTATTAGAAAAGCCGATGCGCTTGCTAGAGTAGCTAAGGAGTTGTCGGAACCCAAGGGA
GATGATGTCCACATAGTCGTGCTCAATAGAAGGTGTTTGGCATCATGCTTTTCAACTCCGGAGTG
GGGGCATCAGAGTGAACTAAAGGAGTTTTTCGGATGACTTAGCCGAAATTCTTGTTGTAAAGACA
GAAGATGATTGGGGGCAACATTTCTTGTAATACTGTAAGCATGGCAAATTACCACAGGACAAGTC
AACTCAGGAACAACTAACGCAAAGAAGAGCTCTTCGATTTGTGTTCGCAAATGAGACACTCTATA
GAAGGTTGGTCTTATGACCAGATGTGGTTACGATGTGTTTCATCAAGTGAAGCAAAATAAATCAT
GGATGAGGTACACACTGGCCTATGTGGAGCCCATCAATCAGGCCCTAAGACGAAACTGAAAATAA
AGCGAATGGGATATTATTGGCCCTATCGATCCAGGCACACCCTCA



Found at i:1030239 original size:27 final size:27

Alignment explanation


    Indices: 1030201--1030254  Score: 81
    Period size: 27  Copynumber: 2.0  Consensus size: 27

    1030191 CCCGAAAAAC

                *            **        
    1030201 CTCCGCTATGTATGCTTTCAAGGCAAT
          1 CTCCACTATGTATGCTTAAAAGGCAAT

                                       
    1030228 CTCCACTATGTATGCTTAAAAGGCAAT
          1 CTCCACTATGTATGCTTAAAAGGCAAT

    1030255 ACGATGTCTG


Statistics
Matches: 24,  Mismatches: 3, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  27   24  1.00

ACGTcount: A:0.28, C:0.24, G:0.17, T:0.31


Consensus pattern (27 bp):   
CTCCACTATGTATGCTTAAAAGGCAAT

Left flanking sequence: Indices 1029701 -- 1030200
GAGGGCATGGATGACTTATTTCTACCTGCCCTCACTTATTTATAAGTAAGCACTTCAACTAACTC
ACCGAGAGAGAAAGAGAAGTTCTTTCACCAACAGGCTATTTTTATTCTTAATATATGTTATTATT
CGTATAGAAAGCCGCCTATTCTTTATAGAGAGACTCTTTCTTATAGACTCTTTCTTGCTTGCTTG
TTCTCTCTTTTTTTCTCTATCTTTCTTGGACTTTCTTTTTATAGCAAAAGAGAGTAGAGCTGACT
GAGTGTATAGCAATGAAAATGGAAGAGTAGACCAGAGGAATAAATTGCGTCCCCAGATGTAGGCA
GACTAAGGCAAGGACTCGACTGCAACCCCTCCCTCGAGAGAGGATGGATGGGTAATGGCTAAGGA
AAGGTGGGAGCACCACCGTTTCTATTCCTTCTTTATCTGCCCTTTTCCCATTGTTTATCTCACTT
ACTTAGCAAGCTTTATGTAGATGTCATTGCTACTCCCCGAAAAAC


Right flanking sequence: Indices 1030255 -- 1030754
ACGATGTCTGCTTTAAAGACTAGTGATCCAAGCTGCGGGTGCTCGCAGTCCATCCTCAACTAGCG
AATGCACTTGCGGTTAAGAAAGGTCCCGCATCTCATACCTAATGAAATTGACTGACCCGGCATCT
CTTTCGTTCAATAATGCCTTCGCTTCAAGACGCACAGGAAAAAGACACTCAATTTCAGAATTGAA
GTAGGCCTACCACCCTTCCTTTCTCTAGGCGTCGGTGCTTCCTTTACCGGATCATATCTATCGTT
CTGATTCAAATAGTTTGCCTTCCTGGCGCATCGATCAGTAAGTTTCTCAGAATTTCTTCAAAGAA
GATCTCTTTTTTGAGCTAAGGAAAACTTAAAAGCTTCTCAAACCAGAGTAGGAATTCGATCAATC
GCTATCCATGCCAGGAGGAAAATCAAGATGAATGGGAACGAGAACCTTTTCCGAGAATAGGCAAG
TTTTGATACAGAAAAACGAGCCCGTTTGCGAGCGTCGTTTTCCTT



Found at i:1044287 original size:19 final size:19

Alignment explanation


    Indices: 1044259--1044307  Score: 55
    Period size: 19  Copynumber: 2.6  Consensus size: 19

    1044249 CTGATATCGT

                 *             
    1044259 ACTCGCAATCTCATAG-TA
          1 ACTCGAAATCTCATAGCTA

                        *       
    1044277 AGCTCGAAATCTTATAGCTA
          1 A-CTCGAAATCTCATAGCTA

                *      
    1044297 ACTCCAAATCT
          1 ACTCGAAATCT

    1044308 TACTCGTCAA


Statistics
Matches: 26,  Mismatches: 3, Indels: 3
        0.81            0.09        0.09

Matches are distributed among these distances:
  18    1  0.04
  19   22  0.85
  20    3  0.12

ACGTcount: A:0.35, C:0.27, G:0.10, T:0.29


Consensus pattern (19 bp):   
ACTCGAAATCTCATAGCTA

Left flanking sequence: Indices 1043759 -- 1044258
GGTTGACTTGAGTTCTGCCTTGCTACTTTATATCTTCCTTGGTACTCCCATATAAATTAAAAAGC
GAGTATGAGTAGAAAAGCTAGCTACAAACCTTATGGGTGACTCTGATTCTGTAGAACCGATAACT
CCTGATACGCCAAGTCAATACAGAGCTGGCTTTGGATCTAATAGCTGATAAACGAGAGATAGAGC
AACAAGTCTTCTTTCATGTTTTGAATCTTATGACTGATAAAGAGAGTTCACCACATCAATTAAAG
TACCGATACGAATACCCAACTCAAGCTGATAACAACTATTAATAGTATGGCCAGCCAATATCACT
ACTGGAAATCTGCTTTCTAGCTTTGATTCTTCATTCGTACTTTGAGTCTTGTATTCCTGCTTGTA
CTACATAAACAACAGCTAAGCTTATGCCTTCCAATTAGCTGACTCTCAATCTTAGAGCTAATATT
ACTGTAAACGAGAGATGCACTTACGGCTTAGAAACCTGATATCGT


Right flanking sequence: Indices 1044308 -- 1044807
TACTCGTCAAACTAAAGATGATGTCTACCATACACCTAAACATACATATAGTAATGTGCATCTAT
TACCAAAAACACCCCATTTAGGGGTATTAGAAGGAAGTCCTTGCAGATCCGGTAGAGTGTCTTTT
TTAGTCCACAAGGATCAAGATCAAATGAATGTTGATTCTTTTTCTGTTGAAGAAAGATTTATTTC
TATTCCTGATCTTTCAATGACTAATAATCAAGTAAGATGTAAAGTGTTGGACACTTCTAGTAAAG
GGTAAATTTTGGAACATTTACGGACTGATCAAATCATATCGAATAATCATTCGAATTTCATATAT
CCTTCTATTCAGCAAGAGAATTTGTTTTTTATTGAGGATCAAGAATTAAAGGAAGTTCCGGAATA
CCAAACATTGATTGAGGATCAAGGAGTACAAGAATTGAGTCCGGAATACCCAAGGAAAGTATATT
CGTTTTTTTTAATTCCCGAAGAAGTACATCTCTTACCAAGATCCT



Found at i:1044308 original size:19 final size:19

Alignment explanation


    Indices: 1044265--1044309  Score: 56
    Period size: 19  Copynumber: 2.4  Consensus size: 19

    1044255 TCGTACTCGC

                 *           * 
    1044265 AATCTCATAGTAAGCTCGA
          1 AATCTTATAGTAAGCTCCA

                                
    1044284 AATCTTATAGCTAA-CTCCA
          1 AATCTTATAG-TAAGCTCCA

                   
    1044303 AATCTTA
          1 AATCTTA

    1044310 CTCGTCAAAC


Statistics
Matches: 23,  Mismatches: 2, Indels: 2
        0.85            0.07        0.07

Matches are distributed among these distances:
  19   20  0.87
  20    3  0.13

ACGTcount: A:0.38, C:0.22, G:0.09, T:0.31


Consensus pattern (19 bp):   
AATCTTATAGTAAGCTCCA

Left flanking sequence: Indices 1043765 -- 1044264
CTTGAGTTCTGCCTTGCTACTTTATATCTTCCTTGGTACTCCCATATAAATTAAAAAGCGAGTAT
GAGTAGAAAAGCTAGCTACAAACCTTATGGGTGACTCTGATTCTGTAGAACCGATAACTCCTGAT
ACGCCAAGTCAATACAGAGCTGGCTTTGGATCTAATAGCTGATAAACGAGAGATAGAGCAACAAG
TCTTCTTTCATGTTTTGAATCTTATGACTGATAAAGAGAGTTCACCACATCAATTAAAGTACCGA
TACGAATACCCAACTCAAGCTGATAACAACTATTAATAGTATGGCCAGCCAATATCACTACTGGA
AATCTGCTTTCTAGCTTTGATTCTTCATTCGTACTTTGAGTCTTGTATTCCTGCTTGTACTACAT
AAACAACAGCTAAGCTTATGCCTTCCAATTAGCTGACTCTCAATCTTAGAGCTAATATTACTGTA
AACGAGAGATGCACTTACGGCTTAGAAACCTGATATCGTACTCGC


Right flanking sequence: Indices 1044310 -- 1044809
CTCGTCAAACTAAAGATGATGTCTACCATACACCTAAACATACATATAGTAATGTGCATCTATTA
CCAAAAACACCCCATTTAGGGGTATTAGAAGGAAGTCCTTGCAGATCCGGTAGAGTGTCTTTTTT
AGTCCACAAGGATCAAGATCAAATGAATGTTGATTCTTTTTCTGTTGAAGAAAGATTTATTTCTA
TTCCTGATCTTTCAATGACTAATAATCAAGTAAGATGTAAAGTGTTGGACACTTCTAGTAAAGGG
TAAATTTTGGAACATTTACGGACTGATCAAATCATATCGAATAATCATTCGAATTTCATATATCC
TTCTATTCAGCAAGAGAATTTGTTTTTTATTGAGGATCAAGAATTAAAGGAAGTTCCGGAATACC
AAACATTGATTGAGGATCAAGGAGTACAAGAATTGAGTCCGGAATACCCAAGGAAAGTATATTCG
TTTTTTTTAATTCCCGAAGAAGTACATCTCTTACCAAGATCCTCT



Found at i:1045018 original size:14 final size:14

Alignment explanation


    Indices: 1044999--1045027  Score: 58
    Period size: 14  Copynumber: 2.1  Consensus size: 14

    1044989 AAACCCGTCT

                          
    1044999 GTCTACGGTCTATG
          1 GTCTACGGTCTATG

                          
    1045013 GTCTACGGTCTATG
          1 GTCTACGGTCTATG

             
    1045027 G
          1 G

    1045028 CCTCCGGGTC


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   15  1.00

ACGTcount: A:0.14, C:0.21, G:0.31, T:0.34


Consensus pattern (14 bp):   
GTCTACGGTCTATG

Left flanking sequence: Indices 1044499 -- 1044998
TTTCTATTCCTGATCTTTCAATGACTAATAATCAAGTAAGATGTAAAGTGTTGGACACTTCTAGT
AAAGGGTAAATTTTGGAACATTTACGGACTGATCAAATCATATCGAATAATCATTCGAATTTCAT
ATATCCTTCTATTCAGCAAGAGAATTTGTTTTTTATTGAGGATCAAGAATTAAAGGAAGTTCCGG
AATACCAAACATTGATTGAGGATCAAGGAGTACAAGAATTGAGTCCGGAATACCCAAGGAAAGTA
TATTCGTTTTTTTTAATTCCCGAAGAAGTACATCTCTTACCAAGATCCTCTTCTATAAAGGTCCA
GAACAATAGTATCATTGGAGTAAATACATGGCTTACTTTAAATAAAAGGAGCCTCCTTCGGACCT
TGACTTACATACTCCAAGCAAACCAAGCATCGATGGATGAACCAGGACGGAAGAGCCTGGTAAAC
AAATGGAATCATCGTGAGTCTTTCAGTGATGACTAAAACCCGTCT


Right flanking sequence: Indices 1045028 -- 1045527
CCTCCGGGTCTTCTTCTTAAACCAAAGGAAGAAAACCAAGTCCTGGAAACACAAGACGGAAGTCG
TCCCGCTTTGGTAAAGGAATGTTACTCTGATTGGTAATGTTGGCGATGCCAAGCATGCTCAGGAC
GGATCTAGCGCTAATCAAGTAGTCAGGAGCTTTTCCAGCGATCTTGGGGCAGCCTTCCTGGAAGC
ATTTCCTAAATGCGAGAGGTTTGACAGATGACCGGCGGAATTGCATTCATTCATAGGGTGCCTTT
AGGCAGCTCGGTTATAAAGAAGAAGGAAAGAGATTCATATGCCTCTCCGGTTCCTAAGGCGTAAC
CACGCAATCTTTAGGTCATCCGGTGGCGTGATTGGTTTTGGTTTTTTATACATGTCTGGGCAGGT
ATGATGAACCATTAACTCAGCAAAGGCAAGTGAGGGTCGACGAAGTTGAGGGTACCTTTAGGTAG
CCTAGGGAGGTTTGATAGCAAAAAAGGCCTGTGGGGTCAGTGAAA



Found at i:1047639 original size:24 final size:24

Alignment explanation


    Indices: 1047607--1047663  Score: 96
    Period size: 24  Copynumber: 2.4  Consensus size: 24

    1047597 CTTGTCCGCA

                                    
    1047607 TGCTTCTCCTTATGCTAATGAGTC
          1 TGCTTCTCCTTATGCTAATGAGTC

                                *   
    1047631 TGCTTCTCCTTATGCTAATGCGTC
          1 TGCTTCTCCTTATGCTAATGAGTC

             *       
    1047655 TCCTTCTCC
          1 TGCTTCTCC

    1047664 ATCCCACAAG


Statistics
Matches: 31,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  24   31  1.00

ACGTcount: A:0.12, C:0.32, G:0.14, T:0.42


Consensus pattern (24 bp):   
TGCTTCTCCTTATGCTAATGAGTC

Left flanking sequence: Indices 1047107 -- 1047606
AGGAAGAAACAGGGGTCGGGTTTTCACAAACAGAAGGACGTACACATGAATTCAAGCATGAAGTT
TAGAAGGGGGTCCCGCACGTCTATCTTCTTTACAGCCGTTGACCCGACGAGTAACTACTAATGTT
ACGAGTGAAAAGGCGCTCTCAGTCAAGGGGACTTTCTTTGCTTTAGGTTAAAAAGATGCTTCCTC
TACGCCCTGGCATGGATGCTTTTGATTAAACCCACCAAGAAAGGGCTTATGGGAATGCTCAAAGA
GCTACGCTAGACTCTCTTGCCAAGAAATCTTTGACAAATACTAGGCCTAATCCTATTCCTATTTC
TACTCTGGCACACCCATCTGCAGTATCAAACATAAGCATGCATTCAAGATATCGAACTATTCCCT
TGACTTGCTATACCAGCTCTTTCCTATCCACCAAGCCCCTTCCCTTTCATTATCACTATCACTAT
AGATACCCGTTCCTTCCATTGGTTTGGTGCCGTGCCTTGTCCGCA


Right flanking sequence: Indices 1047664 -- 1048163
ATCCCACAAGCTAGCTTCTCCTTCTCCTTCTTTTACGTTACAACTAGTGTCAACAAAGCTCAGAT
ACCCATTAGAGCATGGACATGTTTCTCCCAGTATCTAATAAGATGAGTATAGCCTTCTTTCAAAT
ATTACCCCTCAACTTGAATGCGTCAGTGTCAAGGTTCCCCCGGGGCATTTATAGAGATGGTCAAG
CTCTCTTCCTCTTATCTCTATATAGGCCTCGCAGGACCACTCCAACAAACTAAGTAAAAAGGACA
TGGTTTTAAGTAAAATAAAGAACGCAATATCAGAACTAAGTAAAATGGACGCCTCCTGCTCAACT
CTCTCGCCAGTCTTATGTAACTCTCCTTTTCTTATAATTTCCTCTTATTGCATAATGGGCGCCCT
ACAGTACACCCCACTATGAATGGTGTTGCTGACGAAACAGAACGCTTCCGGATATGGTAAGGAGT
ATGATTAGTCATTCTACTTTACCAGAATCACTCTGGGGAGAATCA



Found at i:1100910 original size:19 final size:19

Alignment explanation


    Indices: 1100888--1100930  Score: 68
    Period size: 19  Copynumber: 2.3  Consensus size: 19

    1100878 TAGTGACTTC

                      *        
    1100888 GCTTTTAGATGGGAACATT
          1 GCTTTTAGATAGGAACATT

                        *      
    1100907 GCTTTTAGATAGTAACATT
          1 GCTTTTAGATAGGAACATT

                 
    1100926 GCTTT
          1 GCTTT

    1100931 GAAATGTAGT


Statistics
Matches: 22,  Mismatches: 2, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  19   22  1.00

ACGTcount: A:0.26, C:0.12, G:0.21, T:0.42


Consensus pattern (19 bp):   
GCTTTTAGATAGGAACATT

Left flanking sequence: Indices 1100388 -- 1100887
GTGCTCACAGGTCAGCTTTCTCATAGATCACTTAAGACAAAGCAAATTCACTACAGCACTTCAAC
TTCATAATACGAACCTTTTTCTGGAATCAGAGTAACAATAGAGCAGGCAAGTCTAACCAAAGTCG
AATATTAGTTAGAAATAAGTAGAAGATTTATTTTCATGTCTTGTGTAAAATATATATTGGTATTC
GTTTGCACAACTACTTTGAAATTGGTGCTCCTTGCGGCCTGGCATAGGGAGTAGGTAATAGTACG
CCGGGGGTAACCTGCCGATAGAATCTCTGCTCCTTCTCTATATACGAGTTTTTTTAGGTCAAGTA
AAATAGGTCATTGATTGCTAATTCAGGCGCGCAGCGGTAAGGTAATCTACGCCTTGCTTGGGTAT
AGGTAGAAATAAGAGAGGTTACTCTACGGCCATATCATTACTTTATCAAAATCTCATTAATATTA
GTCAAATGGTTGGAGTGAAGAGTATCATATATAGATAGTGACTTC


Right flanking sequence: Indices 1100931 -- 1101430
GAAATGTAGTAGCAAGGAGGTCACTCAGCGTATGTATAAATATGAATTTGGTCTTCGGATAGATA
AGATTTAATTGCTTCTCAACGAATTTATCGTCTCTTTGAATGTTTGTTGTCTTCTTTTCTCACTA
ACTAAGGCGCGAAGCGACCGGTATTAGAACGTTTCTTTGACTCTGACTTGTAGTTGAAGCTTAAC
ACATAGGAAGGCACTGAACATTGGTTTAAGCTGCTGGATTTGCTTTGATAGGCATTGGATTTGGA
ACAGAAGAATAGGCGGATCTCTTTTAATAGCACTTTCTGTGTGGAATAGATTTGGATTTGGTTCT
TTACCTGTCCTATAAGATGTCAACGTTCTTCCTACGGATAGCTACCTGGGATAAGTCAAGTACAA
TAGGACGGCTAGGATAACCAGAATATAAGTGAGTTTACTTTTTTTTTTTCTTTTCAACGAGTTCT
GTATCTATGATGCCTGCCGGGACAGACAGGTACTTCCTACTCTTG



Found at i:1138739 original size:26 final size:26

Alignment explanation


    Indices: 1138703--1138755  Score: 79
    Period size: 26  Copynumber: 2.0  Consensus size: 26

    1138693 ATACACGATC

                                      
    1138703 ACCTAACCCGTGAGTGAGGAAACGCT
          1 ACCTAACCCGTGAGTGAGGAAACGCT

                  *     *         *   
    1138729 ACCTAATCCGTGGGTGAGGAAATGCT
          1 ACCTAACCCGTGAGTGAGGAAACGCT

             
    1138755 A
          1 A

    1138756 GATAAAAAAG


Statistics
Matches: 24,  Mismatches: 3, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  26   24  1.00

ACGTcount: A:0.30, C:0.23, G:0.28, T:0.19


Consensus pattern (26 bp):   
ACCTAACCCGTGAGTGAGGAAACGCT

Left flanking sequence: Indices 1138203 -- 1138702
GCCAAGCGCAAGGGAATCTAGTCAAACAAACAAATAGGTGAGAAAATGAACACGCACCCACCCAA
CCCCGGGCTCAGTTCAATTCTATAGGGAGGGGTAGATGCTAAACGATTCGGGGCATTTCCAAGTG
GGCTAGGGCTTTCTACTATATATAAGTCTGGGAATTAGGGCAATATGCCAGCCAAAGCAATGCAA
TTCCTAGAGGAGCTTGAAATGAGCATGTTCAAATATGTAACAGCGTGAAAAATAACACAGCCAGC
CAGGTACGAGAACGAATGGGTTTTTCTCTTGCTCGGGACTTTTTTATACTGAAACTCGCTTTTAA
GCACAGAGTTTTACTAATAGCAATCCGAGTTGTGCAATCCATACAATGGGAATGTGCGCTTTTCT
ATATAACAAAAGAAAGAGGCGCGGAAGGATTTCTAGCAGCTTACATACAAGATAGGCCTTTTTGC
AAGCAAGTCACTCGGCAGCAATTCTTGTAATTAACATACACGATC


Right flanking sequence: Indices 1138756 -- 1139255
GATAAAAAAGCCGGGCCCCTTTCTAGCTTGTCTATTCCCTCGAAGTTACAGAAATACCAGGTAAG
TCACTTAAGAGAAAATGTTAAATGCCAGGTCTCCCCTATCAAATGAACTAGAGTGGAATGAGAAG
TTATACCCTGGAAGGAAATGACTAAATAAAAGGCACTCATCCACCGGCCAGGAGATTATTTCAGT
CAGTCAGGTGATGAACTACTAAAAGCAGCCAGGAAATTAACACAAAGACAGGCTATAGAATATAG
TTGAGATGAACACGGCGTTCTAATAAATACTCGCCTCGGAGTTTAGAGGTCACTCACTTAGAATT
ATATAAACCGGGCGGCGGGGCACCCTGGGTAATTCATTCGTTCAATGAGAGCGGAACAAACTTCA
ATGTACTGACTCTGATTCTATGTGAAAGGAGATTATCTTCCACCCATACAATAGTGCTATTCCAG
TAATGAACTGGCCTAGGAAATAAATCCCAATGAACTAAGTCCGGG



Found at i:1139642 original size:15 final size:15

Alignment explanation


    Indices: 1139622--1139651  Score: 60
    Period size: 15  Copynumber: 2.0  Consensus size: 15

    1139612 TATCGACCTA

                           
    1139622 TTAAGCATATAGTTG
          1 TTAAGCATATAGTTG

                           
    1139637 TTAAGCATATAGTTG
          1 TTAAGCATATAGTTG

    1139652 AAGTAGCATG


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   15  1.00

ACGTcount: A:0.33, C:0.07, G:0.20, T:0.40


Consensus pattern (15 bp):   
TTAAGCATATAGTTG

Left flanking sequence: Indices 1139122 -- 1139621
TCAATGAGAGCGGAACAAACTTCAATGTACTGACTCTGATTCTATGTGAAAGGAGATTATCTTCC
ACCCATACAATAGTGCTATTCCAGTAATGAACTGGCCTAGGAAATAAATCCCAATGAACTAAGTC
CGGGCGGGCCCTAACCACTTCTGAAAATAAGCCAATCTATAATAATGGAGTCCGATGTTGTTAAA
TGCCAGGTAATTCACACACATAAATAGGTTAGCCGGTTAATGAACCTTGTTTCTGGGACCTCAGG
CAATATGTAAAAGAGTCAGTCCACACTCACTTACGTAAGAGTTGGAGATTCCTCCATCTATGAAC
GGGTATTCAAGTGGGAAAGATAAAGTCATTGACAAGTAATTCCCGCACTGCAAATGCGCTATCTA
TGATATTCATTCGGAAAAGGGGGAGTAAATATATTCACACTAATAAATAAAAAATTCAATATGGG
ACTTAGTGGAATCAGCCCCTTTTCAAATCAAAGCTTATCGACCTA


Right flanking sequence: Indices 1139652 -- 1140151
AAGTAGCATGATTTCAGCTTCAACGCGCTTAGGCTACTACCTTCAACCCCATCTTACTTAGATGG
AGGAGATAGTAAGCAAGACTGTCTATGCTACGATCTTGCTTCTGTTATGAAATTTCCAAGGTTTA
GAGGAATTCTATCAGCCTAAGAGTCAAAGCGAGGGGAATTGCTTATTAAGTATATCACATAAGCC
GACTTCAAGTATCTAGTGAATGGAACCAACAGCCAACATATTATCATTTAAGAGGAAGGGACGCT
AACTATATGCGCACACACATGCTCTTCCGGACATTTATTATTTACTGAGGCTCACTCTTACCGTT
CGCTTGGCTCTAACCGCCTATCCTTATTGGTTGGTCGGCTCTTCTCCTGAACTGAAACCAAAAGA
AATACACGTAATATGATAAAATGCAGAGTAGTTTGCTATGGTTGAATTAGCACAAAAAAGAAAAA
ACAAAACAGCTCCTAGAAGCTTGAAAATGCATTCAAAATTATAAA



Found at i:1177179 original size:16 final size:16

Alignment explanation


    Indices: 1177158--1177189  Score: 55
    Period size: 16  Copynumber: 2.0  Consensus size: 16

    1177148 GACTTCGTTT

                            
    1177158 TTCGGTACTGAAATAG
          1 TTCGGTACTGAAATAG

                     *      
    1177174 TTCGGTACTTAAATAG
          1 TTCGGTACTGAAATAG

    1177190 GGGTTTCCTA


Statistics
Matches: 15,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  16   15  1.00

ACGTcount: A:0.31, C:0.12, G:0.22, T:0.34


Consensus pattern (16 bp):   
TTCGGTACTGAAATAG

Left flanking sequence: Indices 1176658 -- 1177157
GCTTAACATGGGATATTGAATCGGGATTGTGGCTCCTCTTGTTGTCGACTTGACAACCGCAAGTC
TCTTCGATTGATCTTCATCGTCACTAGCCATTGCTTTAGAACCAGGCGCTGATACCAATTGGTAT
CAGAGTCCATTGTTTTTTTCTCTTCTTTAATCTTGGATTAACTTATAGCAAACAAATGCATAGAA
GATGGTTTTGCTTCTTCTTTAAGGGCTAGTGTACTAGGCGGCCTATTAAACCAATAAGGGAGGGG
GTATTAGAAGGTAGCTAATTCAGTAGCTGATTCAGTAGAAGGCAACTTAAACTTTAGTTCACTGA
TTTCATTAGTTAGAAGGGAAAATGTGGGAAAGATCTGCACTCGCCCTTTTCGCTCGTAACGTTAG
TAGTTACTCACTGGGATAAAAAACAAGGATCACATCCCCCTATTGCTTTCGTTTTCCAAATAGAT
TTCTGATAAAGATGGGACCCACTCCCCCAAAACTAGACTTCGTTT


Right flanking sequence: Indices 1177190 -- 1177689
GGGTTTCCTAATGGAAGAATAAAAGGATTCCCCTGACCAATGGTTGTATGAGTCATCACCCTAAA
TATTCAAGTAGGAGCCAGCAACCAAGGCCGCAGGGAAAGATAGCTAAGTAAAGTCAGCACCGGAA
TAGTTTGTTTGGATGCATGCTTCCGCAGAAGATCGTTATACATACTGAGGAGGATCTTTCTTTTT
ATGACTTGACTTACTCCGTGTCTAAGCGCTTTCTTTTTCGAAAGAGAACCTGCCGGGTATTCTTT
AATAATTACATCTGTATCAGGTCAGGGCTTGATAGATCCATCCATCTATCCAGCTAGGGCTAATT
CGGGGTTTTCATGACGTTGGCTTCGGTATAATTCACGAACTTCCTCGCGAACGCTGTCACTCGCA
GGGTTGAACCATAGAAATGCAATTGTTAGGCAATCCGGCTACTACTTATAAATTTCTGGATTTCT
ATTTCAAATTAATCCTTCCCAAGGGCAGAGAGCGTGGATCGGTTG



Found at i:1185043 original size:29 final size:29

Alignment explanation


    Indices: 1185011--1185072  Score: 79
    Period size: 29  Copynumber: 2.1  Consensus size: 29

    1185001 CTTATGTACA

                   *     *       *       
    1185011 CCGCTATGGAAGTTTGTGTCCGGCTTCAC
          1 CCGCTATAGAAGTGTGTGTCCAGCTTCAC

                    * *                  
    1185040 CCGCTATATATGTGTGTGTCCAGCTTCAC
          1 CCGCTATAGAAGTGTGTGTCCAGCTTCAC

                
    1185069 CCGC
          1 CCGC

    1185073 GGCGAGGAGG


Statistics
Matches: 28,  Mismatches: 5, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  29   28  1.00

ACGTcount: A:0.15, C:0.31, G:0.24, T:0.31


Consensus pattern (29 bp):   
CCGCTATAGAAGTGTGTGTCCAGCTTCAC

Left flanking sequence: Indices 1184511 -- 1185010
GAAATAAAAAGGTAATCCGGCCGTGCACTGCTTGATACTGCTCCAGCTAAGACTTTTCTCTTTTA
CAGTTGAAGCTGCATCACCAAGAGTATAAAGCTCTCAATAAATCTATAGTACTCTTTCTCTTTCA
AACTAGAAATAAGTATACCGGAGAAAAGAAGGGAGGTAGAGCGCTTTACTACTTGCTAATAAAAG
TCGATTAATAGAAAGCGAAGCCTTGAGTAGAATCTCTGAGAAAGCATTCTTAATGAGAGGAGTTA
ATTAGAGGTTTTGGAGGCCCATATTTAGTATTAAGAGTAAGAGTCCGAGCTATTGTGCTTTCAGA
AGTCGAACTGTACCTCCGCGAAAGTGAGGCCAGCCACATAAGTTCACCTGCCCAGCCGACTCCCG
CATCAACAGATCCAGCTTTAGCTTATGCTTTCTTCTGTTTTAAGAGAAAAAAGTCTAAGGAAAAG
AAAGTAAAATGAGTACTCCCACTAAAAGTTGGATTCTTATGTACA


Right flanking sequence: Indices 1185073 -- 1185572
GGCGAGGAGGAACTTGTTCTATTCAGTGAAGATTATTTATCTATTTGATGAGTCTATGAAGAAGC
TAGTAGTATAGATAATTTTTCTTAGTGATAAGTTTCATTCTTTTCTTCGCTCCGCGCCTGCCTTT
CTATCTTATAGACGCAAGATAAGAAAAGCTTTAACGCTATCTTCGCTCTATTCGAGCAGATGTAC
GAGAATACCTTTTCTCTTTTTTCTTCATCACATATACTACCTTACGAATCGAGCACATATACAAG
AATACCTTTTAGAAGCAAAAAAGTTTTCTTACCCAGTGAGTAACTACTAATGTTCCTTTTGGGGA
TAACAAGTCAATTCGAATAATTTGTCTCAAAAGTATTCAATTAGTTCGGGCTTGTTTAGTATTGA
ATTGGGACCAAGAAAAAAATAGTTCTTCTATAGAAGAAGAGGTTCATGCTGTATTTGTTGAGATA
AAGACAAGTTATTTAATTCGCAATTTCATAAAAATTGAGTTACTT



Found at i:1187574 original size:89 final size:89

Alignment explanation


    Indices: 1187403--1187581  Score: 245
    Period size: 89  Copynumber: 2.0  Consensus size: 89

    1187393 AATTACCGGT

                                                   *                        *
    1187403 GGAAGGTTACACATTTATCCCCCTTATAGAGAAAAAATGGACACATTCCCTAAGTCAGCTGAGTT
          1 GGAAGGTTACACATTTATCCCCCTTATAGAGAAAAAATGCACACATTCCCTAAGTCAGCTGAGTC

                  ***               
    1187468 AAATTGGTTCATGTCAAATAGAGA
         66 AAATTGAACCATGTCAAATAGAGA

                *                            *                   *           
    1187492 GGAATGTTACACATTT-TGCCCCCTTATAGAGACAAAATGCACACATTCCCTATGTCAGCTGAGT
          1 GGAAGGTTACACATTTAT-CCCCCTTATAGAGAAAAAATGCACACATTCCCTAAGTCAGCTGAGT

                          *           
    1187556 CAAATT-AACCAATTTCAAATAGAGA
         65 CAAATTGAACC-ATGTCAAATAGAGA

             
    1187581 G
          1 G

    1187582 CTTCTTTGTT


Statistics
Matches: 79,  Mismatches: 9, Indels: 4
        0.86            0.10        0.04

Matches are distributed among these distances:
  88    2  0.03
  89   77  0.97

ACGTcount: A:0.36, C:0.20, G:0.17, T:0.27


Consensus pattern (89 bp):   
GGAAGGTTACACATTTATCCCCCTTATAGAGAAAAAATGCACACATTCCCTAAGTCAGCTGAGTC
AAATTGAACCATGTCAAATAGAGA

Left flanking sequence: Indices 1186903 -- 1187402
AATACTCAAAGTTTCATATCCGAAGCAAGTTTTCAAGAAACTGCTCGAGTTTTAGCAAAAGCTGC
TCTGCGAGGTCGTATTGATTGGTTGAAAGGCCTGAAAGAAAACGTTGTTCTGGGAAGGATTTTAC
CTATTGGTACTGGATTGAAAAAATGTGTACATCCTTCAAGACACGAGAAAAGCTTTGCTTTAGAA
AAAAAAACGGAAACTCTATTTGAGTTGGAAATGTTAGATATTATGTTACATCATAAAGAATTATG
ATGTTCAATAATCTTTATAAGGCAAATTCTGATGAAATGTTAGAAAAATCTTGTATTTTTGAGAT
TTCACTATTCTTTACTTAATATTAAAACGAAAACATATTCATTTTTTCCTTTAACTATAATTTTT
GAACTCAATCTGATTATGGATTTTTGAATCAATCAAGTCAGAATAAATCAAATAAGGAATTCAAA
AAGTTGGTTAGGGTTTGTGTCATGCATCAATGGTGAATTACCGGT


Right flanking sequence: Indices 1187582 -- 1188081
CTTCTTTGTTCGTAACATTAGTAGTTACTCACTGGTTACACTTTTTGACCCCTTCTAGGGAAAAT
AATCGATATACTGGTCTGCTTATTGGGACACTTCACATGTCTTCTTCGTCTTCCTCTGACTTGCT
CAGGGGCTATTCGGCACGACTCTCGACGGTGGCGTGGGGTTTTGACTCTGCTTTCATCTTCGTGC
TGGCTAGGTACGTAACATGTGGATGTTTTCTCTCAATAGCTGTACTTACCTTAAGCTTCAGTTAA
GGATATTTGACTCCGGATTTAGTACCGAATATATTGCCAATGATAGAAATCCACCTACGCACGCC
CCTACTGTCCACCTACGCACGCTTGGACACCTACGCACGCCCCTACTGGACACCGTAGCACGCTT
GGACACCGTAGCTCGCTTGGTTTAATAGAGAGTACTAGGAAGTCTAGACACAGTAGCACGCTTGG
ACACCGTAGCTCGCTTGGATTGTTTATTCCTGTACCTGGATTATT



Found at i:1187950 original size:41 final size:41

Alignment explanation


    Indices: 1187893--1187978  Score: 138
    Period size: 41  Copynumber: 2.1  Consensus size: 41

    1187883 GATAGAAATC

                                 **                   
    1187893 CACCTACGCACGCCCCTACTGTCCACC-TACGCACGCTTGGA
          1 CACCTACGCACGCCCCTACTGGACACCGTA-GCACGCTTGGA

                                                     
    1187934 CACCTACGCACGCCCCTACTGGACACCGTAGCACGCTTGGA
          1 CACCTACGCACGCCCCTACTGGACACCGTAGCACGCTTGGA

                
    1187975 CACC
          1 CACC

    1187979 GTAGCTCGCT


Statistics
Matches: 42,  Mismatches: 2, Indels: 2
        0.91            0.04        0.04

Matches are distributed among these distances:
  41   40  0.95
  42    2  0.05

ACGTcount: A:0.21, C:0.45, G:0.19, T:0.15


Consensus pattern (41 bp):   
CACCTACGCACGCCCCTACTGGACACCGTAGCACGCTTGGA

Left flanking sequence: Indices 1187393 -- 1187892
AATTACCGGTGGAAGGTTACACATTTATCCCCCTTATAGAGAAAAAATGGACACATTCCCTAAGT
CAGCTGAGTTAAATTGGTTCATGTCAAATAGAGAGGAATGTTACACATTTTGCCCCCTTATAGAG
ACAAAATGCACACATTCCCTATGTCAGCTGAGTCAAATTAACCAATTTCAAATAGAGAGCTTCTT
TGTTCGTAACATTAGTAGTTACTCACTGGTTACACTTTTTGACCCCTTCTAGGGAAAATAATCGA
TATACTGGTCTGCTTATTGGGACACTTCACATGTCTTCTTCGTCTTCCTCTGACTTGCTCAGGGG
CTATTCGGCACGACTCTCGACGGTGGCGTGGGGTTTTGACTCTGCTTTCATCTTCGTGCTGGCTA
GGTACGTAACATGTGGATGTTTTCTCTCAATAGCTGTACTTACCTTAAGCTTCAGTTAAGGATAT
TTGACTCCGGATTTAGTACCGAATATATTGCCAATGATAGAAATC


Right flanking sequence: Indices 1187979 -- 1188478
GTAGCTCGCTTGGTTTAATAGAGAGTACTAGGAAGTCTAGACACAGTAGCACGCTTGGACACCGT
AGCTCGCTTGGATTGTTTATTCCTGTACCTGGATTATTTATTCCTTTGGGTAAAGGTGGCCTTTG
ACCGGGGCTAAATACCTCTATTTGCTGTTTGAGGGTATTGGAGACTCTACTGCTATTTCAAGGTT
ATGGGGTGTGATGGGCGTCCATTTCCTTCACATGTCTTCATCGTGTTTGCTTGTTGGGGTAAACC
CATACTGGCCTATTCAGCTTGACTCTTCTGGGTAAAAACACATTCCAGCTTTAAATGTCATGAAC
ATCATCGCTGACATTCTTCTGACAATGATATAAATACACCTACGCACGCTTGGTTTAATAGAGAA
TACTATTAATTCTGACATTAAAGGAAAGGAAAGTTAATTCTCAAGGTTGATCGGAACGCATTACT
TGGTTTCTCAAGTCTTTATCTCCTTCTCTTTCAAGTCCGTTCTCC



Found at i:1187956 original size:23 final size:23

Alignment explanation


    Indices: 1187893--1187969  Score: 85
    Period size: 23  Copynumber: 3.6  Consensus size: 23

    1187883 GATAGAAATC

                                 **
    1187893 CACCTACGCACGCCCCTACTGTC
          1 CACCTACGCACGCCCCTACTGGA

                                   
    1187916 CACCTACGCACG---CT--TGGA
          1 CACCTACGCACGCCCCTACTGGA

                                   
    1187934 CACCTACGCACGCCCCTACTGGA
          1 CACCTACGCACGCCCCTACTGGA

                          
    1187957 CACCGTA-GCACGC
          1 CACC-TACGCACGC

    1187970 TTGGACACCG


Statistics
Matches: 46,  Mismatches: 2, Indels: 12
        0.77            0.03        0.20

Matches are distributed among these distances:
  18   14  0.30
  20    2  0.04
  21    2  0.04
  23   26  0.57
  24    2  0.04

ACGTcount: A:0.21, C:0.47, G:0.18, T:0.14


Consensus pattern (23 bp):   
CACCTACGCACGCCCCTACTGGA

Left flanking sequence: Indices 1187393 -- 1187892
AATTACCGGTGGAAGGTTACACATTTATCCCCCTTATAGAGAAAAAATGGACACATTCCCTAAGT
CAGCTGAGTTAAATTGGTTCATGTCAAATAGAGAGGAATGTTACACATTTTGCCCCCTTATAGAG
ACAAAATGCACACATTCCCTATGTCAGCTGAGTCAAATTAACCAATTTCAAATAGAGAGCTTCTT
TGTTCGTAACATTAGTAGTTACTCACTGGTTACACTTTTTGACCCCTTCTAGGGAAAATAATCGA
TATACTGGTCTGCTTATTGGGACACTTCACATGTCTTCTTCGTCTTCCTCTGACTTGCTCAGGGG
CTATTCGGCACGACTCTCGACGGTGGCGTGGGGTTTTGACTCTGCTTTCATCTTCGTGCTGGCTA
GGTACGTAACATGTGGATGTTTTCTCTCAATAGCTGTACTTACCTTAAGCTTCAGTTAAGGATAT
TTGACTCCGGATTTAGTACCGAATATATTGCCAATGATAGAAATC


Right flanking sequence: Indices 1187970 -- 1188469
TTGGACACCGTAGCTCGCTTGGTTTAATAGAGAGTACTAGGAAGTCTAGACACAGTAGCACGCTT
GGACACCGTAGCTCGCTTGGATTGTTTATTCCTGTACCTGGATTATTTATTCCTTTGGGTAAAGG
TGGCCTTTGACCGGGGCTAAATACCTCTATTTGCTGTTTGAGGGTATTGGAGACTCTACTGCTAT
TTCAAGGTTATGGGGTGTGATGGGCGTCCATTTCCTTCACATGTCTTCATCGTGTTTGCTTGTTG
GGGTAAACCCATACTGGCCTATTCAGCTTGACTCTTCTGGGTAAAAACACATTCCAGCTTTAAAT
GTCATGAACATCATCGCTGACATTCTTCTGACAATGATATAAATACACCTACGCACGCTTGGTTT
AATAGAGAATACTATTAATTCTGACATTAAAGGAAAGGAAAGTTAATTCTCAAGGTTGATCGGAA
CGCATTACTTGGTTTCTCAAGTCTTTATCTCCTTCTCTTTCAAGT



Found at i:1187976 original size:18 final size:18

Alignment explanation


    Indices: 1187953--1187991  Score: 69
    Period size: 18  Copynumber: 2.2  Consensus size: 18

    1187943 ACGCCCCTAC

                              
    1187953 TGGACACCGTAGCACGCT
          1 TGGACACCGTAGCACGCT

                         *    
    1187971 TGGACACCGTAGCTCGCT
          1 TGGACACCGTAGCACGCT

               
    1187989 TGG
          1 TGG

    1187992 TTTAATAGAG


Statistics
Matches: 20,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  18   20  1.00

ACGTcount: A:0.18, C:0.31, G:0.31, T:0.21


Consensus pattern (18 bp):   
TGGACACCGTAGCACGCT

Left flanking sequence: Indices 1187453 -- 1187952
TAAGTCAGCTGAGTTAAATTGGTTCATGTCAAATAGAGAGGAATGTTACACATTTTGCCCCCTTA
TAGAGACAAAATGCACACATTCCCTATGTCAGCTGAGTCAAATTAACCAATTTCAAATAGAGAGC
TTCTTTGTTCGTAACATTAGTAGTTACTCACTGGTTACACTTTTTGACCCCTTCTAGGGAAAATA
ATCGATATACTGGTCTGCTTATTGGGACACTTCACATGTCTTCTTCGTCTTCCTCTGACTTGCTC
AGGGGCTATTCGGCACGACTCTCGACGGTGGCGTGGGGTTTTGACTCTGCTTTCATCTTCGTGCT
GGCTAGGTACGTAACATGTGGATGTTTTCTCTCAATAGCTGTACTTACCTTAAGCTTCAGTTAAG
GATATTTGACTCCGGATTTAGTACCGAATATATTGCCAATGATAGAAATCCACCTACGCACGCCC
CTACTGTCCACCTACGCACGCTTGGACACCTACGCACGCCCCTAC


Right flanking sequence: Indices 1187992 -- 1188491
TTTAATAGAGAGTACTAGGAAGTCTAGACACAGTAGCACGCTTGGACACCGTAGCTCGCTTGGAT
TGTTTATTCCTGTACCTGGATTATTTATTCCTTTGGGTAAAGGTGGCCTTTGACCGGGGCTAAAT
ACCTCTATTTGCTGTTTGAGGGTATTGGAGACTCTACTGCTATTTCAAGGTTATGGGGTGTGATG
GGCGTCCATTTCCTTCACATGTCTTCATCGTGTTTGCTTGTTGGGGTAAACCCATACTGGCCTAT
TCAGCTTGACTCTTCTGGGTAAAAACACATTCCAGCTTTAAATGTCATGAACATCATCGCTGACA
TTCTTCTGACAATGATATAAATACACCTACGCACGCTTGGTTTAATAGAGAATACTATTAATTCT
GACATTAAAGGAAAGGAAAGTTAATTCTCAAGGTTGATCGGAACGCATTACTTGGTTTCTCAAGT
CTTTATCTCCTTCTCTTTCAAGTCCGTTCTCCCTCCTAACCCCCG



Found at i:1188045 original size:18 final size:18

Alignment explanation


    Indices: 1188018--1188055  Score: 58
    Period size: 18  Copynumber: 2.1  Consensus size: 18

    1188008 AGGAAGTCTA

                              
    1188018 GACACAGTAGCACGCTTG
          1 GACACAGTAGCACGCTTG

                 *     *      
    1188036 GACACCGTAGCTCGCTTG
          1 GACACAGTAGCACGCTTG

              
    1188054 GA
          1 GA

    1188056 TTGTTTATTC


Statistics
Matches: 18,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  18   18  1.00

ACGTcount: A:0.24, C:0.29, G:0.29, T:0.18


Consensus pattern (18 bp):   
GACACAGTAGCACGCTTG

Left flanking sequence: Indices 1187518 -- 1188017
TAGAGACAAAATGCACACATTCCCTATGTCAGCTGAGTCAAATTAACCAATTTCAAATAGAGAGC
TTCTTTGTTCGTAACATTAGTAGTTACTCACTGGTTACACTTTTTGACCCCTTCTAGGGAAAATA
ATCGATATACTGGTCTGCTTATTGGGACACTTCACATGTCTTCTTCGTCTTCCTCTGACTTGCTC
AGGGGCTATTCGGCACGACTCTCGACGGTGGCGTGGGGTTTTGACTCTGCTTTCATCTTCGTGCT
GGCTAGGTACGTAACATGTGGATGTTTTCTCTCAATAGCTGTACTTACCTTAAGCTTCAGTTAAG
GATATTTGACTCCGGATTTAGTACCGAATATATTGCCAATGATAGAAATCCACCTACGCACGCCC
CTACTGTCCACCTACGCACGCTTGGACACCTACGCACGCCCCTACTGGACACCGTAGCACGCTTG
GACACCGTAGCTCGCTTGGTTTAATAGAGAGTACTAGGAAGTCTA


Right flanking sequence: Indices 1188056 -- 1188555
TTGTTTATTCCTGTACCTGGATTATTTATTCCTTTGGGTAAAGGTGGCCTTTGACCGGGGCTAAA
TACCTCTATTTGCTGTTTGAGGGTATTGGAGACTCTACTGCTATTTCAAGGTTATGGGGTGTGAT
GGGCGTCCATTTCCTTCACATGTCTTCATCGTGTTTGCTTGTTGGGGTAAACCCATACTGGCCTA
TTCAGCTTGACTCTTCTGGGTAAAAACACATTCCAGCTTTAAATGTCATGAACATCATCGCTGAC
ATTCTTCTGACAATGATATAAATACACCTACGCACGCTTGGTTTAATAGAGAATACTATTAATTC
TGACATTAAAGGAAAGGAAAGTTAATTCTCAAGGTTGATCGGAACGCATTACTTGGTTTCTCAAG
TCTTTATCTCCTTCTCTTTCAAGTCCGTTCTCCCTCCTAACCCCCGAAGGGGCACCTTCCAGTAT
GGAGCCATTCTATACGCCGGGCCTAACTAGATCGGCCTGACGCCC



Found at i:1189041 original size:24 final size:24

Alignment explanation


    Indices: 1189012--1189080  Score: 129
    Period size: 24  Copynumber: 2.9  Consensus size: 24

    1189002 CTTCTTTTTG

                                    
    1189012 TCTTCCTTTTCTTTGTTTTTTATA
          1 TCTTCCTTTTCTTTGTTTTTTATA

                                    
    1189036 TCTTCCTTTTCTTTGTTTTTTATA
          1 TCTTCCTTTTCTTTGTTTTTTATA

                          *      
    1189060 TCTTCCTTTTCTTTCTTTTTT
          1 TCTTCCTTTTCTTTGTTTTTT

    1189081 TTTATATCTT


Statistics
Matches: 44,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  24   44  1.00

ACGTcount: A:0.06, C:0.19, G:0.03, T:0.72


Consensus pattern (24 bp):   
TCTTCCTTTTCTTTGTTTTTTATA

Left flanking sequence: Indices 1188512 -- 1189011
GAGCCATTCTATACGCCGGGCCTAACTAGATCGGCCTGACGCCCGCTTGCCTTGAAAAGTGTCGC
TGTCCGTCCTAGGGCCACCAAACTTTCACTGCTCTAAGAAGCTAAAAGGTTATACTTATTGCAGC
TTGCTCTCTAGGAGCTAGACAGTCTCAAATCCCTTAACCGACTTCCTTCTTATCAAGACGAGGAG
TCGTAGCTGATCCTGTCCTTGGTCGGGCCTCTGTGTGTGGGTCCTCGAGCTACACTACGCTATGT
TTTCCTCAATCACCGCCTTCCCGTACACTTAATAAGCTTGTCCATGTCCACCAAAAGGCATTGAG
TCGCTGTCCCTGGTGCAGCCCGGATCTGACTACTTCCATTTCGGTGTGGCATCCATGATGGTTGC
CGGTAGCTGTTTGTGTGTTTTCGATGATCATTATACGAGAAAAGAGTCTCTGCTTTTTTGAGTAG
TGGTATCGATGAGTGGTGTCTTTTTATGTGCTGCTCTTCTTTTTG


Right flanking sequence: Indices 1189081 -- 1189580
TTTATATCTTCAAGTAGGTGTTTCTTTTCTGTTGTATGTAAGTAAGGGCTGTGTCTTTTATGTAA
GTAGGGTGGCTGTATTCTGAATGTGTGGGTAGGTTTGTTAGGTAGGTAGGGTATAAGGGATGATG
CATTTCCTGTTGTTTCCGAAGTCATGCCGCTTAAGGGGGAGTAATCGCTCTGCCCTTTGTGAGTA
GCGAGTGTTATCTATTCACTCTATGGGATAGATAATACGAGCGGGCGAGTGAGATGAGTCTCTTC
TCTCTACGGAAGAGAGGAATCGAACGGGCAAGGTAAACCAAAGGCGATGAATTAATAGATGTCCT
AGGCTAACGCCGATTGAGTGGTTGGCATCGTTCTCTTTGTTCTCTCCCTCGCTTCGTTGTCAGTT
TGTCCACGAATTCTTCTTATTTTATTAGGCACTGCGAGGCAAGTTAGGATATTCACGTGCTGCTT
CTACCCATTTAGTATCTCATAGCCTGCCTCGTGGCACGACGTTAA



Found at i:1189089 original size:27 final size:27

Alignment explanation


    Indices: 1189019--1189091  Score: 107
    Period size: 24  Copynumber: 2.8  Consensus size: 27

    1189009 TTGTCTTCCT

                                        
    1189019 TTTCTTTGTTTTTTATATCTTCCTTTTC
          1 TTTCTTT-TTTTTTATATCTTCCTTTTC

                  *                    
    1189047 --T-TTGTTTTTTATATCTTCCTTTTC
          1 TTTCTTTTTTTTTATATCTTCCTTTTC

                                 
    1189071 TTTCTTTTTTTTTATATCTTC
          1 TTTCTTTTTTTTTATATCTTC

    1189092 AAGTAGGTGT


Statistics
Matches: 40,  Mismatches: 2, Indels: 7
        0.82            0.04        0.14

Matches are distributed among these distances:
  24   20  0.50
  25    2  0.05
  26    2  0.05
  27   16  0.40

ACGTcount: A:0.08, C:0.16, G:0.03, T:0.73


Consensus pattern (27 bp):   
TTTCTTTTTTTTTATATCTTCCTTTTC

Left flanking sequence: Indices 1188519 -- 1189018
TCTATACGCCGGGCCTAACTAGATCGGCCTGACGCCCGCTTGCCTTGAAAAGTGTCGCTGTCCGT
CCTAGGGCCACCAAACTTTCACTGCTCTAAGAAGCTAAAAGGTTATACTTATTGCAGCTTGCTCT
CTAGGAGCTAGACAGTCTCAAATCCCTTAACCGACTTCCTTCTTATCAAGACGAGGAGTCGTAGC
TGATCCTGTCCTTGGTCGGGCCTCTGTGTGTGGGTCCTCGAGCTACACTACGCTATGTTTTCCTC
AATCACCGCCTTCCCGTACACTTAATAAGCTTGTCCATGTCCACCAAAAGGCATTGAGTCGCTGT
CCCTGGTGCAGCCCGGATCTGACTACTTCCATTTCGGTGTGGCATCCATGATGGTTGCCGGTAGC
TGTTTGTGTGTTTTCGATGATCATTATACGAGAAAAGAGTCTCTGCTTTTTTGAGTAGTGGTATC
GATGAGTGGTGTCTTTTTATGTGCTGCTCTTCTTTTTGTCTTCCT


Right flanking sequence: Indices 1189092 -- 1189591
AAGTAGGTGTTTCTTTTCTGTTGTATGTAAGTAAGGGCTGTGTCTTTTATGTAAGTAGGGTGGCT
GTATTCTGAATGTGTGGGTAGGTTTGTTAGGTAGGTAGGGTATAAGGGATGATGCATTTCCTGTT
GTTTCCGAAGTCATGCCGCTTAAGGGGGAGTAATCGCTCTGCCCTTTGTGAGTAGCGAGTGTTAT
CTATTCACTCTATGGGATAGATAATACGAGCGGGCGAGTGAGATGAGTCTCTTCTCTCTACGGAA
GAGAGGAATCGAACGGGCAAGGTAAACCAAAGGCGATGAATTAATAGATGTCCTAGGCTAACGCC
GATTGAGTGGTTGGCATCGTTCTCTTTGTTCTCTCCCTCGCTTCGTTGTCAGTTTGTCCACGAAT
TCTTCTTATTTTATTAGGCACTGCGAGGCAAGTTAGGATATTCACGTGCTGCTTCTACCCATTTA
GTATCTCATAGCCTGCCTCGTGGCACGACGTTAAACAAAGGTGGG



Found at i:1206876 original size:17 final size:18

Alignment explanation


    Indices: 1206854--1206889  Score: 65
    Period size: 17  Copynumber: 2.1  Consensus size: 18

    1206844 CCCAACTCGA

                              
    1206854 GCCTCACTCC-TTCTTTT
          1 GCCTCACTCCTTTCTTTT

                              
    1206871 GCCTCACTCCTTTCTTTT
          1 GCCTCACTCCTTTCTTTT

             
    1206889 G
          1 G

    1206890 GATTCTAGCG


Statistics
Matches: 18,  Mismatches: 0, Indels: 1
        0.95            0.00        0.05

Matches are distributed among these distances:
  17   10  0.56
  18    8  0.44

ACGTcount: A:0.06, C:0.39, G:0.08, T:0.47


Consensus pattern (18 bp):   
GCCTCACTCCTTTCTTTT

Left flanking sequence: Indices 1206354 -- 1206853
TTAAAGCGCAGTGAAAGCAAGCTACATACATTTGGTCTGGTCGAAATTGCTCTTGCAACCACGCT
CACGCCTTGCTTGAACGGACCGACTTTATCCCACCAAATGGAGGTATGACGACCAGGGCCTCGTA
TAGCTCTTTTTCTTCAAAGAACTTCTCCACGCTACTTACTTAGACAACAATAAAGAAAGTACTCG
AGATGTAATCGGCAGAATAAATGGGGTCACTTTTACCCCACGCCCATTCTATATTTTATCCTTGG
TTGGTAATAATAGGAACGATACAAATCATTTATGGAGCTTCAACTTCTTGGTCAACGCAATTTTC
AAAAGAGAATAGCATATTCTTCCGTATCTCATATGGGTTTCATAGCTATAGGAATTGGTTCTATA
ACTGACATGGGACTAAACGGAGCTATTTTCCAAATGCTTTTTCTCTGCAGAGGCTGTGCTGTAGA
ATACCTAGCTAGCTCAACTATAACCCAACTCGTTACCCAACTCGA


Right flanking sequence: Indices 1206890 -- 1207389
GATTCTAGCGACCTACTCTCTTTGATTATAGCAACCAACCCTTCCTTATCTAACCTAGAAGACAT
AAAGCTCAAGGGATTAAGGAAAGAAAGAACAAACCCTAAGCTGGCTGGTAACAAACCCTACTAAG
CAGGCTGGTTAAGTGCACTCAGAGGAATGGTCTTTGGAAAGCTATAACAGTAAAAGACACTCCTC
ATTGTCAGCTCTCGGGCTCTCTCTCTTTTCAAGCAACCCAAAGGAAAGGCTACAGCCGAGGGAGT
ACAGAGAGTCAATTGAAAAGGAAAGTAATCTCTCTAGCCTTCATTTAGCTCCACAAAGACTTTCT
TTCGGTGAAGCAGCTCCTAGGCTGGCTGGCAAGGGCGGATCCAAGTACTTCTCAACAACTACTGC
TCTATTTAAGTTCAATCTAGTAAATGCTATTTTTATTCCAAAACGAAATAATAACTCCTGTAGCT
TATTGCGCTCGATCTACATCCCGATTAAGCTCTTCTTCTTACACA



Found at i:1221854 original size:17 final size:17

Alignment explanation


    Indices: 1221832--1221865  Score: 59
    Period size: 17  Copynumber: 2.0  Consensus size: 17

    1221822 TAAAGCTCTC

                       *     
    1221832 TTTCTATCAAGTGGTAT
          1 TTTCTATCAAGAGGTAT

                             
    1221849 TTTCTATCAAGAGGTAT
          1 TTTCTATCAAGAGGTAT

    1221866 GTTGTTCCTT


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  17   16  1.00

ACGTcount: A:0.26, C:0.12, G:0.18, T:0.44


Consensus pattern (17 bp):   
TTTCTATCAAGAGGTAT

Left flanking sequence: Indices 1221332 -- 1221831
TAAAAGAAGTCTTGCTTGCTCACTCGCTTACACCACTGGAATATAACTTACGAGGCCCCGGCTCC
TGCAATTGCAGGTTTTTCATCTGGATTTACACGGATCAGAACTTTTTCTCTACGGGCTTAGCACT
CCAACTAAACTATCAATAGGAAGCGAAGTAGCTTGGAGACGCTGGACCTCTATATGTCAGGGAAC
TTCCAATGGATTCACCAACCGGCTTAAAGATAACTCCAAATATGATCGCAAGTCAATCTCTCGAG
AGAGTAGAGTGAGTCTAGTTTTCTTCCCTAGCGCCTCTACCTATCAAATCAATAGAGCACTTTCT
CTCTCCTCGCTCGTGATAATTCATCTGACCTTAAAGGCGATGCCCTCAGGACTGTTGAATTGAAA
AAGGTCCGTTTTCAAAAGGGCATACTTCTGCTGTCCCTCTTGCCTAGTAAGCACCTAAGGGATCT
AATGCATTTTAAGTCTTTCCTTTCTTTCAATTGTTTAAAGCTCTC


Right flanking sequence: Indices 1221866 -- 1222365
GTTGTTCCTTCCACTACGGCAATCTGGTAGGGTATGTAGTATCGCCGCTCTCCAGTCTTTAGGTA
CTCAGCTCTGCAGTTCGTAAGCTAAGCTTAGTAAGGGGAAGGTAGCTCAGTTTCATTCCTCAGTT
CGCTCAGTTCCGAAGCAGTCCGGACCGTCTCCCGACGAAGTATTGCCCTTCCAAATGAGATAGAG
ACTCCTCCTTTCAGATGAGGTAGAGGAAAACTTCTTTGATGGGTGGTGCGGGGCAGGACGAATCT
ATGAGGTAAAGCGACGATTCGTAGGCCATTTGAAAGGAATAGGAAGGCATGGTAAGTAAATTCCT
TCGATAGGTAAACACGTCAGTTGTTTTTCGTGTGTTCTCGTTCAGAATCGTAAAGCTTTGAATCA
TTTTTTATGGATGGAATGGTACCACCTTTGTTTCATTCCTTATGGAGCTGCTGGAGTAGAGTCAT
TCCTTATGGGGTGGCATTCATAGTGAGCTCATCTCCTCTATAGCT



Found at i:1248837 original size:18 final size:18

Alignment explanation


    Indices: 1248814--1248849  Score: 54
    Period size: 18  Copynumber: 2.0  Consensus size: 18

    1248804 TATGAGCTGT

                    *         
    1248814 TAAGGAATTGGGTTAAGA
          1 TAAGGAATAGGGTTAAGA

                       *      
    1248832 TAAGGAATAGGTTTAAGA
          1 TAAGGAATAGGGTTAAGA

    1248850 GCTGTTAAGC


Statistics
Matches: 16,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  18   16  1.00

ACGTcount: A:0.42, C:0.00, G:0.31, T:0.28


Consensus pattern (18 bp):   
TAAGGAATAGGGTTAAGA

Left flanking sequence: Indices 1248314 -- 1248813
TCAAAGTAGGAAGTAGACTGTTTACCAGCCTTTTTAGCCGCTGGTGCCATACTACGTAGAAGAGC
AGGCAGCTTATCCTAGTCACGGGCACTTAAGAAGAAAAAAGAATCTAATCGTGGTAGAGGAAGAT
CCACTAGCTAGGCTACCTTTCTTTTCAATCCAGTAAATAGTGAATATCTTTTTTCCCGCCCCTTA
CTAATAAAGTTTCCCACCACAGCAATCTGTTTTTTTAACACTTAATTTATTTAGTGAATTGACTG
CCGCCCAGATGAGGAGTTTACTACTGAAGTGAAGAGAGTTTTGAGCCTACGCTTGCCACTAAGGA
ACTTCTTTCATCCATGTTTACTTGTTGAGCTCGGGGGGCAACCCGAGCGAGGAGGCATCAATGAG
TTGAAAGACTCAAAACCAAAGAGTGAAGACAAGAAAAGATCCTATTAATAGAATACTGTTAAGAG
GTAAATGCTTATGCTAACGCTACAACTACTTGTTTTATGAGCTGT


Right flanking sequence: Indices 1248850 -- 1249349
GCTGTTAAGCAAAGAAGCAGAGCCTGCTACGTAAGCAATGGTTACCGAATACCTACCTATTACGA
CCTTTTTTTAAGGATTGACTCCGCGCCTTGTTTCTACTACCAACTTGGGTTAGCTACGAATCCTT
GGGTTAGCCGAGGAGCGAGCGTACTTAGGATTGTTAGCCTGCCCTGCAGCGTACACTATTGATTG
AAGGAATCCACCTAAGCCAATTAAATCCATCTACTCCTAAGTCATGGATAACTGCCCGTTATACC
CCTAGACCTCAGGAAGCCTTGATCCAAAGAAACCACAAGACAGAAATCCAAATTAGGCGAAGAGG
AGGTACTATCTTTCCGGGATTGGATTATTTTTAACTCTTCACCTCCAGACAACTCTTAGTGCGGT
TCCCCCCATCAGAGGCTCAGATTGCTTACATTTTAACCAAAGGCATTGGTTCTGCTCGCTTTGCC
AATCGGAGTACCAAGCTTACTGGGCATTCGGCACCGTTGCGCTTG



Found at i:1253878 original size:21 final size:21

Alignment explanation


    Indices: 1253854--1253911  Score: 107
    Period size: 21  Copynumber: 2.8  Consensus size: 21

    1253844 AAAAGGGGGG

                *                
    1253854 ATATTGATGAGCAATGTTTAT
          1 ATATGGATGAGCAATGTTTAT

                                 
    1253875 ATATGGATGAGCAATGTTTAT
          1 ATATGGATGAGCAATGTTTAT

                            
    1253896 ATATGGATGAGCAATG
          1 ATATGGATGAGCAATG

    1253912 GTGGACTTGT


Statistics
Matches: 36,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  21   36  1.00

ACGTcount: A:0.34, C:0.05, G:0.24, T:0.36


Consensus pattern (21 bp):   
ATATGGATGAGCAATGTTTAT

Left flanking sequence: Indices 1253354 -- 1253853
AAAGGTGAAAAGAAGAGTTACCAATGTGCTGAATTTGAAGACCAGCACCACTGCCAACTTGCAAG
GTGTCAGCACCATTGTAGTTGAAGAATGAGCTCAAGTTATTCAGATCACTGGTGACATGGTTGGG
GGCACCAGAGTCTAACACCCAAGCTGAAGCATCTGTGCAACTGGTAGGGGCCAGAGCAGCAAAAG
CTTGAAATCTAGGGTTTGGTTTCCAGGAAGGGTCAGGTTCATACCTGAAATAACACACCTTGGCA
GAATGGTTTGGTTTGGCACATATCTGACACAACACTTTAGGTCCCTGTTGAGGTCTTGGTGGTAC
ATTTGTGTTATTTGATTGTGGTGAGAGTGGAGGTCTCACCCAGCTGTTTTCATTTAGCACTTTAG
TGTCAGCTAAGAATGTGCCTAGTACTCTCTATTAAACCAAGCGTGCGTAGGAAAGCTCGAAAGTG
AGCATATATGGGCCTTCCCTTCATCAGTGCACCTGAAAAGGGGGG


Right flanking sequence: Indices 1253912 -- 1254411
GTGGACTTGTAGAGTAAACTCTTCTATGTAAGCCTCTATAGTAAGTATCTTGGTGAAGTGAATGG
TTCGAAGAAGACTCCTGGGTTGTGTTAAGCATGGTACTTGTTCACTCCACCTGTGAATTGAAGGT
TATAGGATCGGAGCTAGGTGGCTTGGACTGTTTGATCGTCAATTGAGACTTTGAGTGAAGAGGGC
TAAGTCAATGCTAAACTAATCGATCAATTTTATGAAGTATTGTGAGCATTTGGTTTTAAAATCCC
TATAAAGTATAATAATAATCTATCTCTAAGTAAGTATTTGTGTGCTGTCTGTCTATTCAGTGTAG
GTAGAGGGTTAATTTTAAGAAAAGAGCATATCATTCTATTTGTTAAGAGAAATCTATTTAGGAAG
AAGCGATTTACAGTTTTTGCTACGAGCATTGTAGCAAATAAGTTCCTTGAAGTACCAGTACTTAT
TCGGGTAGCTCATAACAGTCTCGGCATAGTGGGTGTATGCATCAA



Found at i:1270576 original size:26 final size:26

Alignment explanation


    Indices: 1270519--1270570  Score: 68
    Period size: 26  Copynumber: 2.0  Consensus size: 26

    1270509 AGTTATCATA

                         *       *  * 
    1270519 GCATTCCTAGTCTGAGTGTCTTAATT
          1 GCATTCCTAGTCTCAGTGTCTCAAGT

                    *                 
    1270545 GCATTCCTTGTCTCAGTGTCTCAAGT
          1 GCATTCCTAGTCTCAGTGTCTCAAGT

    1270571 CTATTCAGTG


Statistics
Matches: 22,  Mismatches: 4, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  26   22  1.00

ACGTcount: A:0.17, C:0.23, G:0.19, T:0.40


Consensus pattern (26 bp):   
GCATTCCTAGTCTCAGTGTCTCAAGT

Left flanking sequence: Indices 1270019 -- 1270518
TTCAGTTCAATGCCACTCTTGACCACATCTCAAGTACACTGAGATTTTGCTTCACCCATATTGGT
TTGAAACGCTGGCGCGCTCCCGTTGAGCCAGTTGGACCTAAGAATTAAATGGTACTCGGTTGACT
TGTGCATTTAAAATATGAAGATGGGTCGATTGTAGTCAGGATACCCAAGTTTCGATGGTAGTACT
TTTTCATATAGGTTCATCCTCAGAAATAGAGGTCTCTACTTAGGCAAATCGATGAGTAGGAGTTT
GTCATATAGGTTCATCTTCTCCTCCACCCTAGCTTCTTTCTTCGTAGGCCCCTACCGATACTCTT
GTCTTCTGACTAAATGCTAGACTTGCAAGGGCTTCGCGCCTTTACTGAGCGCTGTTTACGCTAGG
TAAATCCCTTTGTCAAGCAAGGAATCAGTATGTATGAGGTTAGATTCTTAATAAGGTTTGTATTA
GTTCCTCTTGTTTCTCAGAGCCAGCCTTCGTTGGTAGTTATCATA


Right flanking sequence: Indices 1270571 -- 1271070
CTATTCAGTGTGTCTCAAGTCTTTCTATTCAGTGAGCTGGGCCCCGATAGGTACTTCCAGTGCTT
TTCTCTATTAATCTTATCTTTTCTTCCTCCGTGGAGATTGTTTATCCACCAGAACCTGCTACCTT
GATAGTGTAAGATGTAGGGTAGAGCAGGAAGATGTAGTATTTTTATAGTGCGATATGTAGACCTG
GTCGTCACATACTAAATAAATGAGATGTTCATGTATTCTACACGGAAAGCTTCTTGACCTTCCTT
AACGATTGCAGGTCGAATCTTACCTGTCTTTACTTGCTTCGGCTTAAAGTAAGTACGCACACGTG
ACCCTGCGTAAGGCGACCTTAGGACCAGAAGCTATATGAGTCAAGATATTGATATTGACACCCTG
ACTCTTAGTGTCTAGTGTCCGTGCTTCAGCAGATCCAATTGCTTGGGCTACATCAGCATATAGCT
TTCGGTTAACAATCCCTCCTTCTGTATAAGGAAGTTCTGCTAGGG



Found at i:1278242 original size:20 final size:21

Alignment explanation


    Indices: 1278214--1278252  Score: 53
    Period size: 20  Copynumber: 1.9  Consensus size: 21

    1278204 ATATCCGGGC

                                 
    1278214 TCACCCTAA-CCATACTTTGA
          1 TCACCCTAATCCATACTTTGA

                *         *    
    1278234 TCACTCTAATCCATTCTTT
          1 TCACCCTAATCCATACTTT

    1278253 TAAACGGCGA


Statistics
Matches: 16,  Mismatches: 2, Indels: 1
        0.84            0.11        0.05

Matches are distributed among these distances:
  20    8  0.50
  21    8  0.50

ACGTcount: A:0.26, C:0.33, G:0.03, T:0.38


Consensus pattern (21 bp):   
TCACCCTAATCCATACTTTGA

Left flanking sequence: Indices 1277714 -- 1278213
TGTCTTCTTGCTAGCCAATGCTTAGGCCAGTCTTTCAGAAGAAGGAGAATAAAAAGATAAGAGGA
TATTCCTAACAAAGATCCGTTCGTGATGGGGTTACGGACTAGATCCCATAGTGATATAAAGATAA
AGACAACTAATTCCCTGACATCCTTTCCTTTAGAATAACCTTTCCTTTAACCTTAAGCTTAAGAC
AGGGATAAGTAGATACATGCCCTTAGACAGGCCCACTTCTGACACTGCCCTGGCATTTCTGCCAT
TCCAATTTATTGATTCCTCTATTTCCGGCACTGGCACTGGTCTGGCATAAGTTTTTGGTCGGCGG
TAAGATACACCCAGCATATATGTTTTAGGTCGGAGTCCCAGCATTTTCTACATGGACTATTTCCA
CCACTTTCTAGAAAGCATTTGTTGGGCAAGCCGTTCTCTCACACAAGAGATGAAATGGAATTCTT
CTTGTTCCTATCATTTAACTACCGAGATCTGATCAATATCCGGGC


Right flanking sequence: Indices 1278253 -- 1278752
TAAACGGCGAAGATGCAACCCCGGGCTTGAAAGGTGCTAGAGCAGGAAGCAGAAGATGAAGATGA
AGATGGACTTGCTTTGGAATGTATTAGAATTTTCGGAACCAGCAATGAGACTAGGATGCTTACTC
GAAAGAGGGCGCTTAGGCTAGTCCGGAACTACGAGCAGATCTCTACGCAGATCGGATAGAAACTC
CCGAATACTAGGATGGCTACTCCCGGCAAAGGAAGCTAGCTAGCGAAAGCAATTCATGAACTGGG
ACTGAGCTCCCCGATATGTGATATCACGACCTCACCCTGGCCCTGAAACCTGAAAAGACGGATCT
CATATGGATTTTGCCTAAGGATCAACACTTCCATTCTCACCGGCACCTTAATGGTTCGCATCATC
CAAACCGGCAGCGGCACGGCATCTTTAAAGCCAACCCGGGAATTGGAACTTTTGAAATCAAGATT
CCTTCGGATGGAGGGAAAATAAGGTAGGTTAGTTTCCATAGCGAG



Found at i:1293496 original size:24 final size:25

Alignment explanation


    Indices: 1293454--1293507  Score: 92
    Period size: 24  Copynumber: 2.2  Consensus size: 25

    1293444 TGGTGGTCTG

                                     
    1293454 TACTTTTTTATTTCAAATAGGACTC
          1 TACTTTTTTATTTCAAATAGGACTC

                                    *
    1293479 TACTTTTTTATTTC-AATAGGACTG
          1 TACTTTTTTATTTCAAATAGGACTC

                 
    1293503 TACTT
          1 TACTT

    1293508 CACTCCTTAG


Statistics
Matches: 28,  Mismatches: 1, Indels: 1
        0.93            0.03        0.03

Matches are distributed among these distances:
  24   14  0.50
  25   14  0.50

ACGTcount: A:0.26, C:0.15, G:0.09, T:0.50


Consensus pattern (25 bp):   
TACTTTTTTATTTCAAATAGGACTC

Left flanking sequence: Indices 1292954 -- 1293453
TGGGGGGATGCCTGATTCGCTGATAAATGTAAATCGAGGTCTTTCTTGGGTAGTAGGCGGACAAG
GCTTTACACACACACAGACCTTAGCTTATCCCAAAGTATGCTTCGCTTGTCTGAAAAACATTGAA
TCTCTTTGTCCGGTTCATTCTATATGGTGATGAAGAGGAAGAACCTATCATGATTCAGACAGACC
GTTGTTTTTGCTTACCTCAGTTGATACGTGATTAGAGAAATCGTATAGAGTCTGCGTCTGCGAAT
TGGAATTATTCGTCTATCTTTCTATATATGCTCGAATTCCGATATACGATAAAAATATGTCTGGG
GAAGATATGCAGGTAAGTGGCTCGCAGGAGTAGTAATGAAAAAAGTCTAAGTTTGTTATGTTAGA
TAGGTAGAAATGGGGCCACGTTGTAAAGTAGTTCGCGCTAGCCAAGTAAAGTAGGAGTATAGCTA
CCTCAGCAAGCTTTCTTCTTCTTTGTTAGAGAAAGTGGTGGTCTG


Right flanking sequence: Indices 1293508 -- 1294007
CACTCCTTAGAAGGAGGAAGCCCGTCACCCGACCAAAGGCCTTCTAGCTAGATAGGAGAGAGAGT
ACTCACACATACAGCCTAACTTGAACCTTGGTACACCTGAGGTAGTCCTGTGATTCCTTAAACAA
AACTCGCCCATTCATCATCTATAGAGCTTGAAACTCTTCCATACAAGCCGGAATTACCAAAAGGG
AAGATCTTAGATGCCTGAGAGGAAAAAGGGAAAGAGTAACTTTTCCAGCTCTTTAGTGAAGTTTG
AACTCGTCTATTCTTATCCACCCCTTATCCCTCCATATAAAGAGCCTTCATTCTTATTCTTTTTG
GATGCTCCCCGGATTGGTTAAGCCTTTGTTCAGCTATCATATCAAGGCAACTCGCTTTTCAAAGT
TCCACCATTTGACTAAGCTCTCCTGAACAAATAACCTGTTCAGCGAGATCTTGCCGGGTGAAATA
GTTGTCCCGCGCTTTAGGGAATAATAGTTGTATTAGTCGTGAGCA



Found at i:1294161 original size:18 final size:18

Alignment explanation


    Indices: 1294138--1294172  Score: 52
    Period size: 18  Copynumber: 1.9  Consensus size: 18

    1294128 TTGTGCGAAG

                              
    1294138 ATACAGCCGATATGCGAT
          1 ATACAGCCGATATGCGAT

                   *   *     
    1294156 ATACAGCTGATGTGCGA
          1 ATACAGCCGATATGCGA

    1294173 CATCCTACTC


Statistics
Matches: 15,  Mismatches: 2, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  18   15  1.00

ACGTcount: A:0.31, C:0.20, G:0.26, T:0.23


Consensus pattern (18 bp):   
ATACAGCCGATATGCGAT

Left flanking sequence: Indices 1293638 -- 1294137
AACTCGCCCATTCATCATCTATAGAGCTTGAAACTCTTCCATACAAGCCGGAATTACCAAAAGGG
AAGATCTTAGATGCCTGAGAGGAAAAAGGGAAAGAGTAACTTTTCCAGCTCTTTAGTGAAGTTTG
AACTCGTCTATTCTTATCCACCCCTTATCCCTCCATATAAAGAGCCTTCATTCTTATTCTTTTTG
GATGCTCCCCGGATTGGTTAAGCCTTTGTTCAGCTATCATATCAAGGCAACTCGCTTTTCAAAGT
TCCACCATTTGACTAAGCTCTCCTGAACAAATAACCTGTTCAGCGAGATCTTGCCGGGTGAAATA
GTTGTCCCGCGCTTTAGGGAATAATAGTTGTATTAGTCGTGAGCAGTTTCAAATAAATTGAAAAA
GGAAAAGTAATTTGAAGCTAAAGCTGGGCAAGCTGGAAGACTTTCAAAGCGTTCCTAATTTATAG
GTATTCATTCATAATAAGAAAGTAGTAAATAGCCGTTGTGCGAAG


Right flanking sequence: Indices 1294173 -- 1294672
CATCCTACTCTTCCTAACAGCGTATATGCGATCTCAAGAATATCGCTTACTAGAAAGCAACTATG
CGACAGGTAGAGTTTACTTACTATACAGCGGCTATGCGATAGGAGTAAAGGAGGGCGTTAGCAGC
TTTCAAGGGTTATTCGGGAGATTGAATCTTTAGTTCAAATGTTGCATGAAACGTTGCCCTCTATA
AAGCTTGAAGAGTTGCCTGCCAGGCTCTACCCAAAAGAAGTATTCCACTTTCATTCCAATCCATT
ATTCTTTATTTCGGATTATTATCCAGAAGTGCATTTTCGTGTGCCCGCTGCACTATTTAATGCTA
AATCTGTTTGTTGGGAACTAACGAGCTGCAGGAGGGTAATATCACGCGCTGGGCTGTATAACCTA
AATACTCTTCTCAAGCGCCTGCTCATATCATATTTGACAGAATTATGCGATTGGAAGCAAAGAAA
TAAGCTTATTATTGCTTTACTCTTATTTTCACTATTTCATTCTCT



Found at i:1303785 original size:12 final size:12

Alignment explanation


    Indices: 1303768--1303792  Score: 50
    Period size: 12  Copynumber: 2.1  Consensus size: 12

    1303758 GCTTGCTCCT

                        
    1303768 AACAAGCAACGG
          1 AACAAGCAACGG

                        
    1303780 AACAAGCAACGG
          1 AACAAGCAACGG

             
    1303792 A
          1 A

    1303793 TTGAGCTGCA


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   13  1.00

ACGTcount: A:0.52, C:0.24, G:0.24, T:0.00


Consensus pattern (12 bp):   
AACAAGCAACGG

Left flanking sequence: Indices 1303268 -- 1303767
GCATTTCTGGCGGATGAGTTTCTACCAATTTGGTCTGGTAATAGAATAGGGCGGCTTGCTTTGAC
CAACACCCCACTTTTTGCTCTGTCCATGGAGCGTATGAATTTCCTGGAATGTAGATAGACCAAAA
AAAGGAATGAAGAGATAGGAATAGGAATTATAGTACCATTGAAAAAAGAGGCACCAGTGGAAACA
TCTCTACTAAAAAACCATTTAAATAGTAGGGGTGCTGCCGTGCCACAAGGCACGACCATGGAAGT
AATGAAAAAGAAGAAGTTCTGTAGTTGTACCATCTGCTCTATCCGTTCTATTTGAGCTTCTCCAA
AGAGGATGAGAGGCTAAAAATGAAAGTGTTCGCAACGCATACCGAAAAACGGGTCCCCATGTTGC
AATCCGACCATTAATGACTAAAGCCAGTTTCCTAGGCTCGCTCCTGTAGCTCGCTTTTATAGGCG
GGGGGGCGGAGGGCGAAGCGTGAATGAACTCTTTGGCTTGCTCCT


Right flanking sequence: Indices 1303793 -- 1304292
TTGAGCTGCACTGCGCGTCGTTGCGCGTTCGCGCATCCGTTTTCTTGCAACGAGTAACTACTAAT
GTATAGAGTGAAAAGAGCTCTTTCACTGATCAAAGGCTTCCGTCGCGGACTGCTCTACATTCAGC
CACGCTACAGTGACTTCCGAAGTGCTACGGATGGGACGAAATCCGGCAACCAATTGCTGGCTCTT
AATAACCAACCCAGCCAGAAGCTCAATTCTGCCATAAAATAACGGGAGGGCTGGGTTGCGCGCGA
GCCGAGTGACGTAAGTGCGCAATAGTACTTCGCGCCACAAGCATCTCCTTTTTATAGGTTCTACG
GACCGACGCCTGCCGCTTCATCTGGTAGAAAAGACTCATAGATATGCCTGTAATTAGAAGGAAGA
ACCACCATAAAAATTGTCCTCGTGTATCATCTGTAGCAAAACTATGAACGGAAGCTAGCAATCCG
GACCGTATTGAAAAGGTTCCTAAGACACAGCATAGAAAAGTCAAA



Found at i:1323303 original size:30 final size:30

Alignment explanation


    Indices: 1323261--1323338  Score: 93
    Period size: 30  Copynumber: 2.6  Consensus size: 30

    1323251 TGGAGAGGAG

                 *                    *   
    1323261 AGTGGCACGACAGAGCCTCTTTCCATTGCC
          1 AGTGGGACGACAGAGCCTCTTTCCATGGCC

                   *     *         *      
    1323291 AGTGGGATGACAGCGCCTCTTTCTATGGCC
          1 AGTGGGACGACAGAGCCTCTTTCCATGGCC

            *     *           
    1323321 GGTGGGGCGACAGAGCCT
          1 AGTGGGACGACAGAGCCT

    1323339 TACTGTGAGG


Statistics
Matches: 39,  Mismatches: 9, Indels: 0
        0.81            0.19        0.00

Matches are distributed among these distances:
  30   39  1.00

ACGTcount: A:0.18, C:0.28, G:0.32, T:0.22


Consensus pattern (30 bp):   
AGTGGGACGACAGAGCCTCTTTCCATGGCC

Left flanking sequence: Indices 1322761 -- 1323260
GTGGACTTGTCTCCCTTCGGCCATTTGAGCCTATACCAGGGGTTAGAGCTTTCTGCAGGAGATAT
AGCATTGCTAGTGGATGCTGCACTTGCGACATTCTTTGCTTCTGGTACTTATCTCTTTATCATGT
TCTTTTTACTTGTCATCTCCGGACCACTTACTGCTTTGTCATCGCAGGTTATGGTGGGATTGATC
CTTCTGGCACCTTGGCATTGACTTCGCTTGGGTTAGTGGACTCGTACACCGAGTGTCAGACCATT
GATCTGTCCCATGCGATGGAGGTGGCCTATGCTTTCTCTCCTGACACTGTTTTAGTTGAGCCGTG
TGGTTCTGGAGATACTGAGCTGTTGACTTCATCAGATACTGAGTCCATCAGCAGCTTTATAGATG
AGGAGCCGCTAGAGGTGGTTCTAGCCCTTCCTCGTTGTGCTCTTGATGATGATATGATGGATTCA
GCGTTTGAGGATAGTGGAGAGACTGAGCCTTACTGTGGAGAGGAG


Right flanking sequence: Indices 1323339 -- 1323838
TACTGTGAGGATGGTGATGAGGCGGAGTCATCTGTTCATGTTCTCGAGTAGGAGTTACGGAGGTT
GCATACTCCTTGTATCTTTCTTTATTGAACTTTAGGCTTTAGCCATAGCATCTTGGAGACTGTTT
TGTATGGCTGTTAGGACCATTAGGTCAGACTGTTGTTGACTTGTAGCACATTGGGTTGACATGAT
ATTGCAGGTGTTTTGCCTTTGCTTGATTTCCTCTTTTCTTCATTTATTTTAGCTAGTGATAAGCT
AATCTCTTTCGTTTTCTCCGCATTCATAATACCTGCATTCGGCCTCTCCGACGGAACGTAATAAC
TCACTTATAGAGGAATACCAGAACGTATGAATCCTATTCTATTCAGAACGTACTCAATGAGCTAA
ACACTCTAAACGAATCAGACTACTACAACTACGAAAAAGAGCCCTACTTTTACCTCGTTAAAAAG
AGTTGGAATTCTCTTATCTCTGGCTTTACTTGCTTTTTCTCTCCC



Found at i:1338535 original size:14 final size:14

Alignment explanation


    Indices: 1338516--1338547  Score: 55
    Period size: 14  Copynumber: 2.3  Consensus size: 14

    1338506 TCTACTTCGC

                    *     
    1338516 ACCTTTGTCGAACA
          1 ACCTTTGTAGAACA

                          
    1338530 ACCTTTGTAGAACA
          1 ACCTTTGTAGAACA

                
    1338544 ACCT
          1 ACCT

    1338548 CCATGTGTTA


Statistics
Matches: 17,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  14   17  1.00

ACGTcount: A:0.31, C:0.28, G:0.12, T:0.28


Consensus pattern (14 bp):   
ACCTTTGTAGAACA

Left flanking sequence: Indices 1338016 -- 1338515
GCTGGTAGATCCCACTCGAAACGGTCTTTGTAGGTTTGTGAGTGCCCGGGCTGCTATTAAGCGCA
TTACTCCTCTCTAGAAGTACCTCATCGATTGGATGACATGTTGGATCAGTCCGTGGGCGAAGATT
GATTTGAAAAAGGGACCAATTGCTCAGGTGAGTAGTGTCATACTTTTTTTAAGAGACGTGACGGC
TGAGTTAGTAATGGCTGGCATTCGGTCTCTCTAATGAAAGGGCCCGGTTAATGAAGCATGTCCTC
CATTTTCGAAATAGAATATATGTCGGTGTTTTGTCCAAGCTATCTGCTGCCTACCGTCGGTGATT
TGTTACTCCATCGTTGCTTGTTTTTTTATTATTTTATTTTTTATCATTATCATATATATATTATT
CTGGTTAGTACGAGCTTGTGATCAAACTACGATGCCATAGACTAACTAGCAGCGAGTGAAGGAGC
AAGAGGTCCTTTTTCCTATCTCTTGGAACTTTCTGTCTACTTCGC


Right flanking sequence: Indices 1338548 -- 1339047
CCATGTGTTAAGCATATGTCATTGAAGAGGTAGGAATGCAGTAGTGATATACTACTACCCATATT
GACAGTAATATGAGAAAGTTACTATATGAGTTTATGGATTATCGGTGAAGATACTCCGTTCGGAC
AAAGGCACATGCATGGATTATTCTATTGAGAAGGGCTGAGATGCGGCGCCTTGAACTAGGTTTCT
AATGTCAAAATAAATCAAACGGTATGAATGGAGCTTCTTTTAATTGGTCTAGCCTGGGAATGGTA
ATTAGCAATTCTAGGAGATTCAAAAAGGGTATGGTATGGGGTAGGACCCGGGTCACTTGGCATAG
GGAGGTTGTAGCTGCTTTGGTGCAGGAAAAAAAGGGTAACTCGATGAAAGAAGGCGCAGCTTTTG
GCCTACTTACTGAGGGGGATCCTTGCTCTAGAGGATGTGCACTAGGAATCGGTTGGACATTAGAC
TTACTCGGCATATTGAGCACGGAATGTTCACACAGCTCAGATTGG



Found at i:1346748 original size:20 final size:20

Alignment explanation


    Indices: 1346723--1346761  Score: 69
    Period size: 20  Copynumber: 1.9  Consensus size: 20

    1346713 TTCGCGCCTA

                                
    1346723 GCTTGCCAACAACTTCTTTT
          1 GCTTGCCAACAACTTCTTTT

                     *         
    1346743 GCTTGCCAAGAACTTCTTT
          1 GCTTGCCAACAACTTCTTT

    1346762 AGGCGAAAAA


Statistics
Matches: 18,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  20   18  1.00

ACGTcount: A:0.21, C:0.28, G:0.13, T:0.38


Consensus pattern (20 bp):   
GCTTGCCAACAACTTCTTTT

Left flanking sequence: Indices 1346223 -- 1346722
CCCCAGGGAAGGCAAGACATTTGGCATAAATATGTAAGTTGTTTTTTCCTTTTATTGCCTAGTGC
TAGTTTACTTCGGTGCTATTGAGTTTTCCCTTGCATCCGGTGCAGGGTGGGAGTATTAGTCAGTT
TGCCCAGTTGGAAAGCTTGGAAGGTTAGATGCTCCTCCGGGCTGCTTATCTTCTTTCTTATTCCC
GGAACTAGTTGCTTCTTGTCCAGTAGGAACATAATTACTAGTCGGTTCTGTTGGTTAATTAGGTG
CTGCAGCCGAGCTTATTGACTGTGCTCATTCCCCTGCTTGCTTCCTTGGTAGGAAAGTTGGCCTA
GTCCAGAGCTTGTGAGCTTGTCCCTTGCGTGTTTCGTCAATAGTGTATATTTTCTTATTGGTTCA
AATTGCTATTCCTATTTCCTATTCCCATTGGAGTAAGGCCTCGCTCGATTTACCTAACTTCTAAC
TAACTATAGGCCCTGACTTTTTACATATAATATCTTTCGCGCCTA


Right flanking sequence: Indices 1346762 -- 1347261
AGGCGAAAAAAGACCTAAACGTTCTCAGTTGTCCTATTTCTAGTTGTATCTAGCTCCGCGGAATA
GAAAGTTCCAGGAAAGCCAGCCGCAGCAATAACTTCTTCGTAGGCTTGTTGTAAACCCAGGTACC
TCTCTCTTGACTCCCTTGCTTCAATCCCTCCCTTCGGTACTAGTGCTTCTTATGGACAGTTGGAA
AGCCAACCCCAGGTAATAATATAACGCTTGAGCATGCTGCTTCTCTTTGGAAAGTTGGGTTTTTC
GTATAGGTTTCTTTCTTGTCCTGTACCAGGACCCGTGAAACGAATCGAACGCGCAGCAAGAAAAG
AGACTTCTGGCCTATTGCTTTGTAGGACAACCGGTACTAGCTCAGTTGGTTAGATGCTTAACACA
TGCATCCGGGGTAGGTGGACAGCACTAGTCTTGGAATGCCTACCTCGCTCTGTAGGTAATTCGTT
CCAGCCAAGCAAGAAATGTAGATATAAAAAGTTGTCCCTTGCTTG



Found at i:1360363 original size:19 final size:19

Alignment explanation


    Indices: 1360339--1360376  Score: 67
    Period size: 19  Copynumber: 2.0  Consensus size: 19

    1360329 CAGAATTGGG

                         *     
    1360339 TAAACCTTATCCTTATTCT
          1 TAAACCTTATCCTGATTCT

                               
    1360358 TAAACCTTATCCTGATTCT
          1 TAAACCTTATCCTGATTCT

    1360377 GGTAATGTAG


Statistics
Matches: 18,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  19   18  1.00

ACGTcount: A:0.26, C:0.26, G:0.03, T:0.45


Consensus pattern (19 bp):   
TAAACCTTATCCTGATTCT

Left flanking sequence: Indices 1359839 -- 1360338
TTTCTAAGCTAATACTTGTAGATGTCCATCCCACTATTCCTCTAATGAATCCGTCGCTTCTGACA
GAACTTGTTGACCCCTAACTGGTATGTCAATGTATTCCGAAAAATGTACATGTCCCTATGATGAA
ATGTTATGTAAATGAAAGTGGCGAATTGACTCCTATTGACATTAAAGAGCAAAATAGACTACGTC
AATTGGCTGGGATTATGAAGGTGGATAATATAGCAGAATTTCTGCTTTTGCTCTATTTGTATAGT
ACACTGTCAAAATGTATATCTCATGGCATTAGCTCCCACTTTTTTTATCAGAAAATTGGTGACAA
TAAATAGAAAAATATGAAGAAACGTTCCACCAAGCGGCTAAAGCGGGAGGATGGAAAGGCTGCGC
CCTTTCTTCTCGAGAGTCTTAACTCGTTACATCTTCTATAATGGAATTGTTAGTCCCATTTCCTC
GTGTTAAGCTTTTTCTCTATTTATGATTCAATGTCCAGAATTGGG


Right flanking sequence: Indices 1360377 -- 1360876
GGTAATGTAGAATTTCTCTAGATATGAGAATTTTTTCCAGCACTCTCTTTTTCTACGTAAACTTT
TGATTCATCAGTAGGTAGGGATAAACTCGAATATTCAGAAATGGCAATAGTAGGTGTAGGTAGAG
CATTGTTTTCCTGAGGTTAAGCAGTAGATCCGGTATTTTTTTATAAAGAAGAGTCTAAGCGAGGT
AAGTAATCTTTTCTACTGGTCAGTCCCAGAATCAGCCATACATAATACAATTGCGTGAAGTCCTT
CTTTCTCATGAAACAACCTGTCTATCTTCTCGTATTTGCTTGACTATAGATCAACCTGGCTGACA
TAGCTTCTCCTAAGCGACATACATAGCCAACTAAGTCACTCTTTATGAACAGCTTAGCTCCTCGC
CAAAAAGGAAGGAAGGCGGCACGCACTCAAGTACGTGGCTTGGTACGGTCAAGGGAAAGAAAACT
CCCACATAGTCGAAAAGCAACTGAGCTTGAGCTCTTGGCCATTTT



Found at i:1373469 original size:16 final size:16

Alignment explanation


    Indices: 1373448--1373479  Score: 64
    Period size: 16  Copynumber: 2.0  Consensus size: 16

    1373438 GGTAGTCTCA

                            
    1373448 CGAAAGAGTATTCTAT
          1 CGAAAGAGTATTCTAT

                            
    1373464 CGAAAGAGTATTCTAT
          1 CGAAAGAGTATTCTAT

    1373480 TCAATTAGAT


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  16   16  1.00

ACGTcount: A:0.38, C:0.12, G:0.19, T:0.31


Consensus pattern (16 bp):   
CGAAAGAGTATTCTAT

Left flanking sequence: Indices 1372948 -- 1373447
CCTTCATCGAGTCAAAGCAACACAAACCTCCTCATCAATCCACGCCTTATTGACTCTGCCAGGCA
TCTTCCCCGGTTCCGTTCTTTTTTCGGGTCTGGGTGCATGCGGGTAAGGGAAGAGAATTTTATCT
CAAAGTCCCAGAGGAGATTGTTTGTCTTCCCAAGCAAAGCTACCCAAATTTTATTTCCAAATGGG
CCTAGTCCAGTTTGTCTGAAGAAACAGGTGCTTCTGACGAAAATGCGTGTCCCGATTCCGAGGGA
TAAGAGACCAGGAACCTAAGCTCGCCAACTTGTGCCGATCCGACTCCCGATGTGAATTTCCTTTC
TGCGAACCTATCTATTTTCTTTGAATTTGCTAGTTTATTGGATTTCCAGTTCTTTGCCGAATTCC
TCCTTCCTTTTTTCAGCTACACATCAGATGTAGAGGTGACACAGCCCAGTATCAAGGAGTTCCGG
ACTTCTATAGGTCGCTAATGAGTGGAATTCGTTGTGGTAGTCTCA


Right flanking sequence: Indices 1373480 -- 1373979
TCAATTAGATCTCACTGAGAGAAAAACCTCCGCACCCCCAATGGATGGTCGAAGCTATCTGAGGC
GCGTGCGATGGATTTTCAGCTAGGCTTGAGGGTAGAGACCTTTCTACTCTATCTCTGGGGCTATT
CCATTGAGAAATTTATCTCCTCTTTGAAGGTAGGCTTACGCTGAGACTTTATCTTTACACCAGGA
AAATCGTGTAAGATGAATGCACCGAGTTTTCTATAGACGACCTTTAAGCGCTATCAAAGCCTTCC
CTTATCCTCTCATTTCTACTTAACCTTCACCTCATTCTCTGTGCAGGCTTGGCTCGTAGAGCATA
CCCTGCCACAGAGGGCAGTAGTTGGCAACCATCTCGCTCCTCGCTACTTGAATTGGTGCCTAGCG
TGGAACACACAGGAGGAGTATGCCGCAGTTTTTTTAGTATGCAGCCTTGGTGGGCTTGCTCAAAA
ACACTTATTGATAGTCGAGGGTGAACCTTCATCCAAATGCAAAAC




Done.