123.fas.2.7.7.80.10.50.500.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NC_068216
Parameters: 2 7 7 80 10 50 500
Length:  2064773

Tables:   1   2   

This is table  1  of  2  ( 178 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8594--8635	21	2.0	21	86	4	59	45	16	11	26	1.82
27990--28029	20	2.0	20	100	0	80	50	0	5	45	1.23
39490--39520	16	1.9	16	93	0	53	29	25	22	22	1.99
40600--40635	18	2.0	18	94	0	63	47	13	27	11	1.77
60850--60911	31	2.0	31	93	0	106	24	30	17	27	1.97
61515--61557	21	2.0	21	86	0	59	13	16	6	62	1.51
61847--61884	20	1.9	20	88	0	58	47	10	28	13	1.76
72270--72302	17	1.9	17	100	0	66	39	24	12	24	1.89
89170--89211	17	2.4	17	92	4	66	14	7	35	42	1.73
100559--100592	17	2.0	17	88	0	50	35	17	11	35	1.87
112660--112692	16	2.1	16	100	0	66	27	18	18	36	1.94
116782--116851	35	2.0	35	94	0	122	30	18	18	32	1.95
130127--130168	12	3.0	14	77	22	52	23	16	16	42	1.88
143866--143899	15	2.3	15	90	10	52	11	20	8	58	1.59
158144--158184	20	2.0	20	95	0	73	21	14	24	39	1.91
174392--174433	21	2.0	21	86	4	59	45	16	11	26	1.82
178468--178561	30	3.2	29	66	11	82	21	26	19	32	1.97
178458--178572	60	1.9	60	96	0	212	21	26	18	33	1.96
179014--179090	33	2.3	33	97	0	145	37	5	25	31	1.78
180370--180400	15	2.1	15	100	0	62	19	0	25	54	1.44
182455--182481	13	2.1	13	100	0	54	59	11	22	7	1.56
234041--234093	18	2.9	19	80	5	65	28	16	22	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
245811--245853	20	2.2	20	95	0	77	39	18	6	34	1.78
246475--246511	16	2.3	16	95	0	65	32	16	21	29	1.95
247677--247741	20	3.2	20	95	0	112	27	13	21	36	1.92
248736--248768	16	2.1	16	100	0	66	42	12	12	33	1.79
289248--289412	31	5.3	31	100	0	330	18	29	16	35	1.93
290776--290813	18	2.1	18	90	0	58	18	28	28	23	1.98
290840--290878	18	2.2	18	95	0	69	20	30	30	17	1.96
290862--290938	23	3.6	23	76	20	85	14	18	46	20	1.83
290853--290938	41	2.1	41	91	4	138	15	18	45	20	1.85
303827--303864	19	2.0	19	100	0	76	21	26	10	42	1.85
338953--339008	14	3.9	14	76	21	53	25	39	17	17	1.92
353455--353510	27	2.1	27	100	0	112	28	19	16	35	1.93
368820--368885	34	1.9	34	81	6	80	33	7	24	34	1.84
404328--404388	31	2.0	31	100	0	122	26	22	14	36	1.93
412747--412811	32	2.0	32	96	0	121	50	13	13	21	1.76
447632--447660	15	2.0	15	93	6	51	10	6	0	82	0.83
450511--450548	17	2.2	17	95	0	67	13	18	13	55	1.69
457664--457706	17	2.5	17	100	0	86	51	9	0	39	1.34
457934--457967	17	2.0	17	100	0	68	47	23	17	11	1.81
474681--474783	48	2.1	48	85	0	143	28	14	28	29	1.95
474681--474805	48	2.6	48	83	0	142	26	16	28	29	1.96
501482--501523	22	1.9	22	100	0	84	23	16	21	38	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
505181--505223	22	2.0	22	90	0	68	34	27	23	13	1.93
543985--544014	15	2.0	15	93	0	51	26	10	20	43	1.83
550372--550405	16	2.1	16	88	0	50	32	8	29	29	1.87
554056--554085	15	2.0	15	100	0	60	6	33	0	60	1.23
571456--571515	26	2.3	26	91	5	95	21	10	30	38	1.86
582408--582432	12	2.1	12	100	0	50	60	8	8	24	1.52
609425--609454	15	2.1	14	93	6	51	26	6	36	30	1.82
609601--609629	15	1.9	15	100	0	58	6	27	13	51	1.66
609716--609745	15	2.0	15	100	0	60	33	26	20	20	1.97
609893--609932	20	2.0	20	95	0	71	27	0	42	30	1.56
610249--610280	16	2.0	16	100	0	64	31	37	0	31	1.58
628753--628785	16	2.1	16	100	0	66	36	12	12	39	1.80
631414--631458	22	2.0	22	95	0	81	31	11	17	40	1.85
638917--638951	17	2.1	17	100	0	70	37	5	22	34	1.78
644227--644252	11	2.4	11	100	0	52	15	26	0	57	1.38
673079--673135	28	2.2	25	81	12	62	36	19	5	38	1.74
673868--673929	32	1.9	32	100	0	124	16	20	14	48	1.81
683840--683880	17	2.4	17	83	0	55	39	2	36	21	1.67
741797--741824	12	2.3	12	100	0	56	39	7	35	17	1.78
773270--773324	21	2.5	22	83	13	62	14	25	14	45	1.83
780174--780209	18	2.0	18	88	0	54	25	16	27	30	1.97
780535--780569	18	1.9	18	94	0	61	40	20	0	40	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
800431--800470	21	1.9	21	100	0	80	30	17	27	25	1.97
802127--802183	30	1.9	30	88	0	87	33	26	14	26	1.94
827241--827275	14	2.5	14	90	0	52	31	20	25	22	1.98
827836--827873	18	2.1	18	95	0	67	23	21	18	36	1.95
828712--828787	26	2.9	26	96	0	134	40	7	10	40	1.69
829149--829190	17	2.5	17	96	0	75	40	30	9	19	1.83
840833--840933	51	2.0	52	92	2	168	31	23	12	31	1.92
851402--851443	21	2.0	21	95	0	75	42	9	21	26	1.83
851820--851860	20	2.0	20	95	0	73	48	12	29	9	1.72
851968--852004	19	1.9	19	94	0	65	21	24	24	29	1.99
856621--856687	21	3.2	21	100	0	134	32	26	31	8	1.87
884581--884641	30	2.0	30	100	0	122	40	19	16	22	1.90
903774--903804	14	2.2	14	100	0	62	29	25	0	45	1.54
905963--906001	19	2.1	19	100	0	78	5	23	30	41	1.76
912178--912242	33	2.0	33	93	0	112	43	3	26	27	1.70
916474--916521	24	2.0	24	84	8	62	33	29	10	27	1.90
957252--957300	24	2.0	24	96	0	89	63	10	24	2	1.37
990139--990178	20	2.0	20	90	0	62	20	25	0	55	1.44
990760--990791	16	2.0	16	93	0	55	28	25	3	43	1.69
1004600--1004638	20	2.0	20	94	0	69	58	0	12	28	1.34
1005814--1005859	23	2.0	23	95	0	83	32	26	10	30	1.90
1020290--1020329	21	2.0	21	85	9	57	30	30	7	32	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1022471--1022523	24	2.3	23	93	6	97	30	20	22	26	1.98
1030201--1030254	27	2.0	27	88	0	81	27	24	16	31	1.96
1044259--1044307	19	2.6	19	81	9	55	34	26	10	28	1.89
1044265--1044309	19	2.4	19	85	7	56	37	22	8	31	1.85
1044999--1045027	14	2.1	14	100	0	58	13	20	31	34	1.92
1047607--1047663	24	2.4	24	93	0	96	12	31	14	42	1.82
1100888--1100930	19	2.3	19	91	0	68	25	11	20	41	1.86
1138703--1138755	26	2.0	26	88	0	79	30	22	28	18	1.98
1139622--1139651	15	2.0	15	100	0	60	33	6	20	40	1.78
1177158--1177189	16	2.0	16	93	0	55	31	12	21	34	1.91
1185011--1185072	29	2.1	29	84	0	79	14	30	24	30	1.95
1187403--1187581	89	2.0	89	85	4	245	35	20	17	26	1.94
1187893--1187978	41	2.1	41	91	4	138	20	45	18	15	1.85
1187893--1187969	23	3.6	23	76	20	85	20	46	18	14	1.83
1187953--1187991	18	2.2	18	95	0	69	17	30	30	20	1.96
1188018--1188055	18	2.1	18	90	0	58	23	28	28	18	1.98
1189012--1189080	24	2.9	24	97	0	129	5	18	2	72	1.18
1189019--1189091	24	2.8	27	81	14	107	8	16	2	72	1.20
1206854--1206889	17	2.1	18	94	5	65	5	38	8	47	1.57
1221832--1221865	17	2.0	17	94	0	59	26	11	17	44	1.83
1248814--1248849	18	2.0	18	88	0	54	41	0	30	27	1.56
1253854--1253911	21	2.8	21	97	0	107	34	5	24	36	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1270519--1270570	26	2.0	26	84	0	68	17	23	19	40	1.91
1278214--1278252	20	1.9	21	84	5	53	25	33	2	38	1.70
1293454--1293507	24	2.2	25	93	3	92	25	14	9	50	1.73
1294138--1294172	18	1.9	18	88	0	52	31	20	25	22	1.98
1303768--1303792	12	2.1	12	100	0	50	52	24	24	0	1.48
1323261--1323338	30	2.6	30	81	0	93	17	28	32	21	1.96
1338516--1338547	14	2.3	14	94	0	55	31	28	12	28	1.93
1346723--1346761	20	2.0	20	94	0	69	20	28	12	38	1.89
1360339--1360376	19	2.0	19	94	0	67	26	26	2	44	1.67
1373448--1373479	16	2.0	16	100	0	64	37	12	18	31	1.88

Tables:   1   2