Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_068215
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 2222920
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
File 1 of 2
Found at i:158 original size:22 final size:22
Alignment explanation
Indices: 130--173 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
120 GATACACAGA
130 CAGATAGAATAGCCGGAGTAGC
1 CAGATAGAATAGCCGGAGTAGC
152 CAGATAGAATAGCCGGAGTAGC
1 CAGATAGAATAGCCGGAGTAGC
174 GGAATGAGTC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.36, C:0.18, G:0.32, T:0.14
Consensus pattern (22 bp):
CAGATAGAATAGCCGGAGTAGC
Left flanking sequence: Indices 1 -- 129
GAACACATTGAAAGCGTAAGGCCCGGGATGAAGTAGCTGGTTCGATAGGACCAGGGACACTACCA
GACTGAGTTGCGTCTGACACTAGGGAACTCGGATTCAGAGTATGCGCTCTACGCGATACACAGA
Right flanking sequence: Indices 174 -- 673
GGAATGAGTCATAGGTTCAGATGCGATCTGAGGAGATAAGGGGTTTAACGGACATGGGCGGAGTG
CCTAGCCCGTGTCACTGAAAGTGGGACCACGGTAGTGAACTACTTACGAAAATATGCTTTTTTGG
GGAGAACTTGAAACTCGACAATAGTGTAATTCTTTTCCTACTCTTTTTGTCCGCTTTTAATGAAG
TGAAGCCCGACGAACATATACTTTTTCTATATGCTTTCTTTTCACTTTCTTTCTCACTTCAGTTA
GTTAACTTCAGCTGCTCCTATCCTATATAGAAGATCCGGTTAATATATATCCAGTATCGGCAGCT
AACTAAGCCATCCCCCCCCCTATATCCTAACTAAGCCATTATCTCCTATATCTAGTATCGGCAGC
CAAGCAATTCTCTACCCGGAAAAAGCTAAGCAATTCTCTACCCGGAAAAGGTTGACCTAAGTGTA
TCTATATTGACATGCATTTAGCCTAATTCCATTTCTGTTGGCAAG
Found at i:739 original size:19 final size:19
Alignment explanation
Indices: 715--753 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
705 CATAGTTCAA
*
715 TTGTCAAGTCTCTGTCTAG
1 TTGTCAAGTATCTGTCTAG
734 TTGTCAAGTATCTGTCTAG
1 TTGTCAAGTATCTGTCTAG
753 T
1 T
754 CTTCATATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.18, C:0.18, G:0.21, T:0.44
Consensus pattern (19 bp):
TTGTCAAGTATCTGTCTAG
Left flanking sequence: Indices 215 -- 714
GGTTTAACGGACATGGGCGGAGTGCCTAGCCCGTGTCACTGAAAGTGGGACCACGGTAGTGAACT
ACTTACGAAAATATGCTTTTTTGGGGAGAACTTGAAACTCGACAATAGTGTAATTCTTTTCCTAC
TCTTTTTGTCCGCTTTTAATGAAGTGAAGCCCGACGAACATATACTTTTTCTATATGCTTTCTTT
TCACTTTCTTTCTCACTTCAGTTAGTTAACTTCAGCTGCTCCTATCCTATATAGAAGATCCGGTT
AATATATATCCAGTATCGGCAGCTAACTAAGCCATCCCCCCCCCTATATCCTAACTAAGCCATTA
TCTCCTATATCTAGTATCGGCAGCCAAGCAATTCTCTACCCGGAAAAAGCTAAGCAATTCTCTAC
CCGGAAAAGGTTGACCTAAGTGTATCTATATTGACATGCATTTAGCCTAATTCCATTTCTGTTGG
CAAGGAATGAATGTTTCACACAGTCATCGAAGGAACATAGTTCAA
Right flanking sequence: Indices 754 -- 1253
CTTCATATATTTCTGGGTTTAATGGACAGGAGGCAGTAAATGATTTGTTGGTTTAATGGACAGGC
AGTCAATTTTCTTCGTCTTATAAGGAAGGATAAGACTTTTGCAGCAATGATCTGGGAAGGGCTCT
CTTTTACAGCTTGGATTTTCTTGCCTTTAAGACGTTTCATTGAAGTCAAGATAGGCTCTTCAGAA
ACACTCCCCTCCTCATCTGATGAATCACCAAAAGCAGCCATTCGTCGAACCACTAACAACAGCAT
TATACTGAATTTCGTAGCTGATACTATCAATTAGAGTCGCAGCTCTAACTACAGTAGACTCCGCT
CCAGCATGAAAGAGTGCGCGAAGAACATAAATACTAATTCCTTCTAAAGTATAGGTCTCCAGTCT
CTTTAGAATTCTAGTAACTTATTTACCCAGCTTTTCGCGTCTTATGTAATCTCGAGCCGAAGGCT
CTCCCTCTTTGATAAGCCTAACAATCAAATCTGGCGTATTCTGAA
Found at i:8388 original size:13 final size:13
Alignment explanation
Indices: 8370--8395 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
8360 CCTCGACCTT
8370 ATTAAGGTTTCAG
1 ATTAAGGTTTCAG
8383 ATTAAGGTTTCAG
1 ATTAAGGTTTCAG
8396 CTTGGTTTCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.08, G:0.23, T:0.38
Consensus pattern (13 bp):
ATTAAGGTTTCAG
Left flanking sequence: Indices 7870 -- 8369
GTTCATCTTCTCTTTATCTCGTCCTACACTACTGCTACCATCAATTGACTTTGTTTTGTTGGTTC
AGTTAGTTACACACAACTAGGATTGCACCTCGCCTAGTTGAAAGACAAAAAAGTGCTTTTGCCCT
CCTTTTGGAAATGTTTTTGTGGAGCCTTTTCGAACAGCGCCTATATATTAATCTCCTCCAGGTGT
CAACATTGTTCCTTGTAAGTGGGTCTACAAGATCAAGCGTCGCCCTGAAGGATCTATTGAAAGGT
AGAAAGCGCGCCTAGTTGCTAAAGGCTTCACTCAGGAGGTGTAGATTACTTTGAGACTTTCCGGT
TGTCAAACCCACCTCTATCAAGGTTGTTATTTCTATAGCTCTTTGACTCAATTGGACTTTGCAAC
AACTGGACGTTAACAATGTCATGGTGATCCTTCTTCAGTGGTTTACATATGTAAGCCTCCTGGAT
TTGTTGATCCCACTTTTCCACAGCATGTGTGTCTTCCTCGACCTT
Right flanking sequence: Indices 8396 -- 8895
CTTGGTTTCATAAATTCCAATGAGTAATACGTCCGCTTTTTGGGAATTAGCCTTTTATTGTGTCA
TAGCTCTCAATTCGCTTTCTCCTTGGATGAACTGCCTTATATTGACCCGGGTAGGTACCAGAAGA
AGCAAGTGTAGTACGAGGGTGAAAGAAAGGGAGGTCCGACAAAGGGCTTTTGAGATTGCTGACTA
TCGCTTTTTTGTGCATATAGCCAGAAGTCCAGTCTCATTCCCTCTCCATCTTATGTCAACTCATC
TATTGCCGCGGACTGACTACACGGGCAGGGCTCTGGTGTCAAGCTTGAATGTCAGGGGGGAAGTT
ATTTATGAGTTTCAGATAAAGTCAAGGCGGAGTTAGCAAAGTAAGGTCTATTCTGAAAAGTTGAT
ATGTCCAACTCCAGAGACTGTCGTGCACACTCAGATTGAAATTGCTTTGTCTTGCATTTTTGACT
CTTAAGTGGATCTCCACTCCGAGTAAGTAAGTGGATCTCCCGAGG
Found at i:10398 original size:72 final size:72
Alignment explanation
Indices: 10281--10415 Score: 243
Period size: 72 Copynumber: 1.9 Consensus size: 72
10271 TATAGAAAGT
*
10281 AGTACTTTTGCATATAGGGGAAACATACTTTTTTCACTTTTAGAACAGTCTGTATGAGGGAAAAA
1 AGTACTTTTGCACATAGGGGAAACATACTTTTTTCACTTTTAGAACAGTCTGTATGAGGGAAAAA
10346 GTCGTTG
66 GTCGTTG
* *
10353 AGTACTTTTGCACATAGGTGAATCATACTTTTTTCACTTTTAGAACAGTCTGTATGAGGGAAA
1 AGTACTTTTGCACATAGGGGAAACATACTTTTTTCACTTTTAGAACAGTCTGTATGAGGGAAA
10416 TGTACAAGTA
Statistics
Matches: 60, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
72 60 1.00
ACGTcount: A:0.30, C:0.13, G:0.21, T:0.36
Consensus pattern (72 bp):
AGTACTTTTGCACATAGGGGAAACATACTTTTTTCACTTTTAGAACAGTCTGTATGAGGGAAAAA
GTCGTTG
Left flanking sequence: Indices 9781 -- 10280
CATAATAAGCTGAAACTCGGATCCTTCATCTATTTGTAGAACCTTTATTTGGCTAGAGAGCAAGT
TTGAAACTTGTGCTTTCAAAGAAGAGAATATGGAAGGAACATCCAATTTGTTAGCACAAAAAGAT
ACCCCACTATATCTCGAAAAAGCATCCAAAAAATGTACATAGTAACGATATCCATTAGAAGACAT
AATTGGGTAAGGTCCAAAAACATCAACATGGACTACTTCGAAAGGTTGAGGAGTACAAGACAAAG
AATTTTCAAAAGAGAGTTTATGTGACTTTGCTTGTAACCTGAAATAACTGATCATGGTTTTTTGA
ATCAGTAGACAATGAGTCAAGTTTCATTAGAGCACAACCATCAGTTGACTCCTCGCGTCTTTCCT
TATAACAACATATCGTTCAATCCCTTCTTTACGGTATAAAAAAGAGATAGAGTTCAATGAAGATG
CAGGTATGCCGGCCTTCACATGGATGAGCTAGCCCTATAGAAAGT
Right flanking sequence: Indices 10416 -- 10915
TGTACAAGTAGTCCTTTTTGACCGGGAATCCTTCTTTTCATAGAAGAAAGAGGGACTACATTGAA
CGGACCAAGCTTGAAGAGAAAGTGGCCGTTCCACTTAAGAGTTTGACGCCAAACTTTGTGTGAAA
TTGAGCATCCCCTTTGTTCCTTTTTGAATAAACTTATTATGATCTTCCAAACGAATATTTTGGAC
TTTGTTAATACATAATGCAGTTAGAGTTTCTTTTCCTTGGAGTTGGAGCTACCTGTCAATATATA
TATCTTTTTCTTATTTGTCTGAAAATCTCATTATTTAATAAACGTTATCTTCATATCTTTTTTTT
TGAGTTTCTTATCAAGTCATGCTTGGGCAGTATATTCGGAATCAGCTTGATTCCTTGGAAGATTC
TATAACGGAGTCATGGAGGAACCTCAAGTCAGGTAAACTTGAGAAACCATTTGAAACATTGCCTT
TGAAACAACTTTTTTTTTTTCAATATTCCTATTTGCATTTCTTGT
Found at i:10433 original size:72 final size:72
Alignment explanation
Indices: 10277--10433 Score: 221
Period size: 72 Copynumber: 2.2 Consensus size: 72
10267 GCCCTATAGA
*
10277 AAGTAGTACTTTTGCATATAGGGGAAACATACTTTTTTCACTTTTAGAACAGTCTGTATGAGGGA
1 AAGTAGTACTTTTGCACATAGGGGAAACATACTTTTTTCACTTTTAGAACAGTCTGTATGAGGGA
10342 AAAAGTC
66 AAAAGTC
* *
10349 --GTTGAGTACTTTTGCACATAGGTGAATCATACTTTTTTCACTTTTAGAACAGTCTGTATGAGG
1 AAG-T-AGTACTTTTGCACATAGGGGAAACATACTTTTTTCACTTTTAGAACAGTCTGTATGAGG
*
10412 G-AAATGTAC
64 GAAAAAGT-C
*
10421 AAGTAGTCCTTTT
1 AAGTAGTACTTTT
10434 TGACCGGGAA
Statistics
Matches: 75, Mismatches: 5, Indels: 10
0.83 0.06 0.11
Matches are distributed among these distances:
70 1 0.01
71 6 0.08
72 66 0.88
73 1 0.01
74 1 0.01
ACGTcount: A:0.30, C:0.13, G:0.20, T:0.36
Consensus pattern (72 bp):
AAGTAGTACTTTTGCACATAGGGGAAACATACTTTTTTCACTTTTAGAACAGTCTGTATGAGGGA
AAAAGTC
Left flanking sequence: Indices 9777 -- 10276
TTAACATAATAAGCTGAAACTCGGATCCTTCATCTATTTGTAGAACCTTTATTTGGCTAGAGAGC
AAGTTTGAAACTTGTGCTTTCAAAGAAGAGAATATGGAAGGAACATCCAATTTGTTAGCACAAAA
AGATACCCCACTATATCTCGAAAAAGCATCCAAAAAATGTACATAGTAACGATATCCATTAGAAG
ACATAATTGGGTAAGGTCCAAAAACATCAACATGGACTACTTCGAAAGGTTGAGGAGTACAAGAC
AAAGAATTTTCAAAAGAGAGTTTATGTGACTTTGCTTGTAACCTGAAATAACTGATCATGGTTTT
TTGAATCAGTAGACAATGAGTCAAGTTTCATTAGAGCACAACCATCAGTTGACTCCTCGCGTCTT
TCCTTATAACAACATATCGTTCAATCCCTTCTTTACGGTATAAAAAAGAGATAGAGTTCAATGAA
GATGCAGGTATGCCGGCCTTCACATGGATGAGCTAGCCCTATAGA
Right flanking sequence: Indices 10434 -- 10933
TGACCGGGAATCCTTCTTTTCATAGAAGAAAGAGGGACTACATTGAACGGACCAAGCTTGAAGAG
AAAGTGGCCGTTCCACTTAAGAGTTTGACGCCAAACTTTGTGTGAAATTGAGCATCCCCTTTGTT
CCTTTTTGAATAAACTTATTATGATCTTCCAAACGAATATTTTGGACTTTGTTAATACATAATGC
AGTTAGAGTTTCTTTTCCTTGGAGTTGGAGCTACCTGTCAATATATATATCTTTTTCTTATTTGT
CTGAAAATCTCATTATTTAATAAACGTTATCTTCATATCTTTTTTTTTGAGTTTCTTATCAAGTC
ATGCTTGGGCAGTATATTCGGAATCAGCTTGATTCCTTGGAAGATTCTATAACGGAGTCATGGAG
GAACCTCAAGTCAGGTAAACTTGAGAAACCATTTGAAACATTGCCTTTGAAACAACTTTTTTTTT
TTCAATATTCCTATTTGCATTTCTTGTAGCAGTAACATATGAAGA
Found at i:16309 original size:24 final size:24
Alignment explanation
Indices: 16277--16325 Score: 73
Period size: 24 Copynumber: 2.0 Consensus size: 24
16267 CTAATGTTAC
*
16277 GAGTTCAAA-AGGTAGTTCCTCACT
1 GAGTTCAAAGA-GTAGTTACTCACT
16301 GAGTTCAAAGAGTAGTTACTCACT
1 GAGTTCAAAGAGTAGTTACTCACT
16325 G
1 G
16326 GTAGGAAGCT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 22 0.96
25 1 0.04
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (24 bp):
GAGTTCAAAGAGTAGTTACTCACT
Left flanking sequence: Indices 15777 -- 16276
TTCTCATACACTGTCGCGTTATCATCCAACCGACCAGCCAAAACTTGATCCAACCAAGAAGAAAT
CAATTGAAACACTGGCTTGCTTACCACATTGCGGCCTGGAGAGTTTCTAAGCACACCCCAAATTG
GATCTGCGGGCGGCTCGTCAGCATATGTATCAAAGAAAGTGCTAAGTTCGAAGCACCAGTCTTAT
GTTTTCGGATGAAATCGCATAGGAGAGGGTCGATTAGGTTCAGCCAACCTACGTAAGCAATCATG
GAATTTCACCTTCAACTTCAAAATCTGGTTTGTGGCTGGTTGGCCTTTCCTTGCCCCTTTGGAAA
ACATCATCGTAGATAGCCTTATTGTAGCGCTCGATCAAGTTGTTTTACTCACACGGTCGGACGTC
ACTTTCTTTGTTCGTAACAGACGATACACTACGGCATGTTCCTTTTGGAGAGATACACTACGTTC
GTGTATCTCTCAAAAGCGTAACAGACGAGTAACTACTAATGTTAC
Right flanking sequence: Indices 16326 -- 16825
GTAGGAAGCTCGGACTTCCTTTTCTCACGCTTTTCCGCTCCTCTGAGGACTGAAAAAGGAAGACA
TATGTATGCCCATAAGCCACTGTACTACTCATCAGACTTTGTTAGACTGTACGGCTGAATCCAAG
GAGCAGGGACTAAAGTACAGTAACCAAGGCAACTGATAATCAAGACTCTGTACAGCTTGTTTGAT
AGTAAATCTTCCGTGTTATTGAGTCAAGCAATATCTATGCTAGCAGGCAAAATGCAATGTGGTAG
ATTTCCTGACCTAAAAAGATCTGGATCAATGGGGGCGGGCCTCTTTCGTACGCCAAGACGGCTAG
CTTGTATGTAGTTGCGTAGCCCTCTGAAATTACTTGAATTGCCAACCGGCTTTTTGACTGAATTT
CTTGAGTCTTTTCTTTCTGCGAACCTGCTGTCTTTCCATAGACTTGGGGATTTCATCATAGGAGG
AAGTCTCGATGTACAGGTACCTGACTGAAAGGTGTGTGAATTTCC
Found at i:16909 original size:17 final size:17
Alignment explanation
Indices: 16887--16919 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
16877 CTTGCATAAA
16887 AAGTAAGTAGCTAATTG
1 AAGTAAGTAGCTAATTG
16904 AAGTAAGTAGCTAATT
1 AAGTAAGTAGCTAATT
16920 TGATAATAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.42, C:0.06, G:0.21, T:0.30
Consensus pattern (17 bp):
AAGTAAGTAGCTAATTG
Left flanking sequence: Indices 16387 -- 16886
GACATATGTATGCCCATAAGCCACTGTACTACTCATCAGACTTTGTTAGACTGTACGGCTGAATC
CAAGGAGCAGGGACTAAAGTACAGTAACCAAGGCAACTGATAATCAAGACTCTGTACAGCTTGTT
TGATAGTAAATCTTCCGTGTTATTGAGTCAAGCAATATCTATGCTAGCAGGCAAAATGCAATGTG
GTAGATTTCCTGACCTAAAAAGATCTGGATCAATGGGGGCGGGCCTCTTTCGTACGCCAAGACGG
CTAGCTTGTATGTAGTTGCGTAGCCCTCTGAAATTACTTGAATTGCCAACCGGCTTTTTGACTGA
ATTTCTTGAGTCTTTTCTTTCTGCGAACCTGCTGTCTTTCCATAGACTTGGGGATTTCATCATAG
GAGGAAGTCTCGATGTACAGGTACCTGACTGAAAGGTGTGTGAATTTCCAGGGAATATAATATAA
TAGCATTGGCTTAGGCTTGGCACTCAAATCCCAGCCTTGCATAAA
Right flanking sequence: Indices 16920 -- 17419
TGATAATAAGTTGGTTCACATGCGCAATTATAGAATTGGAATATATTTCGAAGTGCATTTTTTCT
CGGACAAATGAGCCATTTTACTTACGCCTTTTATGATATTACGTGAGTGTGGTACCAAAACCACT
TCTAATGAATAGATATTTAGCTAGCCCACTCGAATAGAGTAGACAAGATAGAATGTTGCATATTT
CCATATGTATATATTTTGAGAAAAAGTCCATCTCCTTTGGCAGAGTCAGTATTAGGATTTCGTTA
TTTGACTAGTGAAGCTGAGCCAATTGACATTTCATATGAATGAAGTCGCCCTTTTCCTATAAACT
CTGCGACGAGTAAGGATTTGAACGCTGGCTGCTTGTCCTTAGTGCACCGAATATAGGGGCTGTGA
CTTACTCGAAGCCCCTTCCTTCGTTGGATAAACCCTGGGCGGCTAAGGCCCATACTGATTGGCAA
AATGCCTACTGACTGTTTCTATGCGCGCTCTTTGACTTGTATTTC
Found at i:21236 original size:24 final size:24
Alignment explanation
Indices: 21201--21257 Score: 73
Period size: 24 Copynumber: 2.4 Consensus size: 24
21191 AACAGTCTCG
*
21201 TTTG-ACTCCAGTGAGTAACTA-CT
1 TTTGAACT-CAGTGAGGAACTACCT
21224 CTTTGAACTCAGTGAGGAACTACCT
1 -TTTGAACTCAGTGAGGAACTACCT
21249 TTTGAACTC
1 TTTGAACTC
21258 GACTCGTTCC
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
24 25 0.83
25 5 0.17
ACGTcount: A:0.26, C:0.23, G:0.18, T:0.33
Consensus pattern (24 bp):
TTTGAACTCAGTGAGGAACTACCT
Left flanking sequence: Indices 20701 -- 21200
GCTACTAAAAGCTACTGTCTCATAACCGAGAAAGATCCATCCATAAGTATAAGTACCGGCCGGCT
AGCAGAATACGAGGAAGTAGTAGGCGCTTCGCTCGATACTTTAATTGCAGCCTCCCTCTCATTCT
TCTTTCGTGTCGCAAAGAGGAACACCTACAGACAACTAGATATGAGTCACTATATACGAGAAATG
TCAGTGCGCTATATGTTATTACGCGGAAACCCACTTGTTTGAGGTTTTCCCTACTTCGTGCTTTC
TGAGTTCAATCTGGAAAAATCAAGGAAATCAAATAGGCCTCACCTAGATAAGAAGGCAGTACCAA
CATATCCTTCGGGTTATACTTCGTAAGCGGAGAGAATGGTGACTTCGAAGGGCCTTCGGAAAGCC
TTTTTTGAGAGCAAGTCCCTACCTACCTCGAGCTATCTATTCGTAACGCAAAGTAAGTACGCTAT
ATGAAAGTCAGATAGCTTCTATATGCATGCGAAGAAACAGTCTCG
Right flanking sequence: Indices 21258 -- 21757
GACTCGTTCCCTAAAAAGTCGATTTGCTTCCTCGTTCACATCAGGGCGGGAACACAATCCATATT
CGGAATGGAGCCAGTGACTAGTATATAATAAACATACACTAGTAACCAGGTTGTATCATTGCCAT
GAGTTTGGATAAAGAGAGAAGAGCCTATGCGCCCTCAAAGCCTACTTTTGGGAGTATGATTTCTT
CCCCCAAGCAGCCAAAGGGAAAAACGGTTAGGTAGTAGTTGGTTGAGGTTACGGGCTAGGTTAGG
AAAGAAGAGGAGGGAACTCCGCACGCAGGGCAGAGTTTTGCTTCTTTGAATAATAAGTAGAATAT
GTATTCCTTTTGACTCGACATCATAAACTCTCATACAGTGGCCTATTCAGTGCTAGTGTTTCATT
GCCATGGTGGAAAAGCGTTGCATGCATTGGTTCACTCTAGCATTCCCATACCTCGTTCGCTTTTC
TACTCGATTCTCTATTTTGATATAGAAATCTTAGTTCGTTACCAA
Found at i:60125 original size:24 final size:24
Alignment explanation
Indices: 60098--60146 Score: 82
Period size: 24 Copynumber: 2.0 Consensus size: 24
60088 TCTTTGTCCC
60098 CAGTGAGTAACTA-CTCTTTTCACT
1 CAGTGAGTAACTACCT-TTTTCACT
60122 CAGTGAGTAACTACCTTTTTCACT
1 CAGTGAGTAACTACCTTTTTCACT
60146 C
1 C
60147 GTAACATTAG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
24 22 0.92
25 2 0.08
ACGTcount: A:0.24, C:0.27, G:0.12, T:0.37
Consensus pattern (24 bp):
CAGTGAGTAACTACCTTTTTCACT
Left flanking sequence: Indices 59598 -- 60097
GTCGTTTAGGCCGGTGAATGAGATTTATGCCTGCTCGTTGCAGTCACCTCCGGGGTTCTTCGCAC
CTGGGTAGTACCAGGACCCCTGTGCCCCGGACTGCACTGTCCGCCCTATGACCCAAAACTCCAAA
TGAGCCTTGCGACGAGACGCGGACATTCCTCATGCTGCGGTTCCCTCCGGTCCGTTCCCGGGTTG
GGTTAGGGGAAGATCCGAGCGATTGCCTTCGCGGATCCAAACGTGCTCACAAGGCGCACAATAAG
AATAAGACCAATAGAGACTTCATAAGAGACCATTTGAGCTGCAGATCGTAATGCTCCTAGAAAGG
CATATTTCGAATATAGAGGGCGCTCCCAACAATCCACGAGAATATCATACCCAACTCTGAACCGT
ACGAGCACGTCCTCTGTCACCCCCACCGCGCTTACGGCTCTATACCCCAACCCAACTTGCAAATA
ACAACATGAAAAGAATACACTAAGCATTTCCTATTTCTTTGTCCC
Right flanking sequence: Indices 60147 -- 60646
GTAACATTAGTAGTTACTCGTCTGTTACGCTTTTGAGAGATACACGAACGTAGTGTATCTCTCCA
AAAGGAACATTAGTAGTTACTCGTCTGTGTAGAACGAAAAGAGGACTAGACTTTAACGCTCGCAT
TAGCAAATAGACGTATTCCTGAGCTTAATGCACGAAAACAATGAGAGATTAGCTCTAGTTGCCGC
TGTTTCTGCGCGCGGGTAGATAAAACTTTTCATTTCCCCTTTTTAGGAGTATAGTAAGGATTCTC
TTCCGTAGCGAAGCGCGTGAAGGCCTCTGCATAAGAGCAGTCTGCTTTTAGCTCCTGGATGTCTT
GATCCAGTTTGGCCAAAAGAGTAGCATAATTAGCGGAAGGCCCCTCCCCCTCGGGTTTTGGATAC
TGCGTGTTGGCAAAGTCTTCCGTCATATCGCGGAACCTTTTTTCATCCCAAGTGGTATTTCCAAA
ATCAAATGTTTTATCTATTGATTTGCAGGCTCGAAAGGCCTTCTT
Found at i:79186 original size:12 final size:12
Alignment explanation
Indices: 79165--79195 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
79155 GCGCTAGTGC
*
79165 GCTTGCTCCGTT
1 GCTTGTTCCGTT
79177 GCTTGTTCCGTT
1 GCTTGTTCCGTT
79189 GCTTGTT
1 GCTTGTT
79196 TGTTGATTTG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.00, C:0.26, G:0.26, T:0.48
Consensus pattern (12 bp):
GCTTGTTCCGTT
Left flanking sequence: Indices 78665 -- 79164
AGTGAACGGATGCGCGGATGGTGCGTAAGGATGAAGACAGAATAAGAGCAAGGCATCACCCTTTT
CAAGCAATATCCTAAGTGATAGAGAAACGTTAGCCTAAACGGACCAGTTCCCCTAGTCGTACCAT
TCAAACACAAAGAGAAACACATCTTTGATTTACCAGTACTGCGTAAACAGTACCAGCAGTTCCAA
ATATTAAGTAATAAATAAATCAATGCAGAAGAACAGATTAACCCAGATTCTGACAAATGAATTGA
TTCTCGAGCAACCCCACACTCAGAAGCTGTGTGTCCAAGCTCAAGACATTGACTTTTCTAGTCCC
CGTGTTTTTGTCCTACTCCCATTTTCCCCTAAGCGGAGCATTGGAAGTTGGGTCAGAAAGGAGTA
AACACCGGTCAAAACGTCCTACCCGCGATTTGCCCTCAGTAAGTGCATTTTGCAAATGAACTTTT
TATGCCAGCCTATAGCCAAAGTGATAATTGCTTTCGCGCTAGTGC
Right flanking sequence: Indices 79196 -- 79695
TGTTGATTTGACTCTTTTTCTTGGCTCGATAGATTGTGGGGTCGCAGTTCAAAAGCGAGATCCCA
ACCTGGTTAACATTCCTTTCTTCTATATCAATATCCAGGCTGCTCTACAAAGAACTTACCTAGAT
CTCTTCCTAGGTCAGTATCGAAGATGTACGGTGCTACACCATGCTCTACACCTATACACAAAGTG
TCCAAAAAGGTGGGTCCCTTACCGATCCACATCTCTAACCTAGCCTTGTTGTAGCCAATATGGTA
CTATGACGCGAGCCTCTATATCTTTCTTGCTATCTAAATTGATGCACTACCACAACGTTGACCTA
AAGAAAATTTCTTCGCTACTTGAAGCACACTATGACTCATGTATGTCCTACTCCTTCGACCGACT
TATTATCTTGATCTTAAGGAAGGCGGGCACGAGGTAACTTTGACTTGAGTCAATTACGTCATAGT
AGCTATTGCTGTCAGAATAAGCTATCTTCAACTGTTCGTCTTTTG
Found at i:79910 original size:31 final size:31
Alignment explanation
Indices: 79872--79933 Score: 115
Period size: 31 Copynumber: 2.0 Consensus size: 31
79862 TCGTTTCCAA
79872 CGAATAGCTTACAGTCTCTGCACCTATCTTT
1 CGAATAGCTTACAGTCTCTGCACCTATCTTT
*
79903 CGAATAGCTTACAGTTTCTGCACCTATCTTT
1 CGAATAGCTTACAGTCTCTGCACCTATCTTT
79934 TTGATTCAAT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.23, C:0.27, G:0.13, T:0.37
Consensus pattern (31 bp):
CGAATAGCTTACAGTCTCTGCACCTATCTTT
Left flanking sequence: Indices 79372 -- 79871
TACACCTATACACAAAGTGTCCAAAAAGGTGGGTCCCTTACCGATCCACATCTCTAACCTAGCCT
TGTTGTAGCCAATATGGTACTATGACGCGAGCCTCTATATCTTTCTTGCTATCTAAATTGATGCA
CTACCACAACGTTGACCTAAAGAAAATTTCTTCGCTACTTGAAGCACACTATGACTCATGTATGT
CCTACTCCTTCGACCGACTTATTATCTTGATCTTAAGGAAGGCGGGCACGAGGTAACTTTGACTT
GAGTCAATTACGTCATAGTAGCTATTGCTGTCAGAATAAGCTATCTTCAACTGTTCGTCTTTTGT
TCGAAAGTCAAGGAGGTTGGAGGACGACGCATTTCTTTCTTCACAAACCTTCTTCTTATGTTTCA
TTTGTTTTTCTTTCTATATACGTATGTCTTTCTTTGGTATATAGGCACAGACTTTCTCAACGTTT
CGATAGACAAATCCTACCAATGCAAGGTAATCCACTCGTTTCCAA
Right flanking sequence: Indices 79934 -- 80433
TTGATTCAATAACTAGGTTCGACTTTTCTCAAAATCAAGATTGGGCTCCGGATTGCCCATTTGGA
AAGAGTACTATGTATCTAGCTCAGTAGACGACTTTCCCCGCAACTGCCCGCATGCTTTCTTTGGT
GTATAGCCATACCTGGGAGGATTTAGCATCTAAACTGAATCTTTCATATCACCAAATATACGCAC
CGCAGTGCAGCAATTGCTCGTGCTTCTTGGATTCAATTCATCCCGCTCAAAAACCAATTTGATAC
AAGGCTAGCATTATGGTAGTAAAGTGCCCCTCAACGTATTTCTTTTGGGAAGCACTCTGCACTGA
AGCAAACTGGTACCTTCGAGCTTCAAGATAGCAGGAAAAGCCCCCCCTGAGTACCCGGCTGTCAA
GCCTTTTTTTCTCACTTTCAAAGGTGAGTTGTTTCCTTGGAAAAAAGCGCCTATACAATAAAGTA
CGCGCGGCGGGGAGGGCTTCGTTTTAGTGCTGCTTGAGTGAAGAA
Found at i:104697 original size:17 final size:17
Alignment explanation
Indices: 104675--104709 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
104665 GCCTATATTT
104675 AGTAGCTGTATTGAGAA
1 AGTAGCTGTATTGAGAA
104692 AGTAGCTGTATTGAGAA
1 AGTAGCTGTATTGAGAA
104709 A
1 A
104710 TGTACCAGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.37, C:0.06, G:0.29, T:0.29
Consensus pattern (17 bp):
AGTAGCTGTATTGAGAA
Left flanking sequence: Indices 104175 -- 104674
CTTCGGAAGAGAGCCCCTAGTGCATAGTGGATCGTTAGTTGAATGAAGAGATTAATACTTGTCTA
CTTTTGGCCAGATGAGGGTTTCGACAATGCTCTTAGAGCAGAACTAGAGCTAGAGTAATAATATT
TTCTTTTTGATTATATTACCAGTTTCTAACCAGATTGAGCCTTATTACTCACCCGGCTGATCCAG
ATACAACAGAAGCGGATAACCCGAAAAGGGAATCGGATGGAAAATTTTGTAGAAAGTGTGTTTAC
GAGAGGAATCCACTTTGTTTGACCCAGAATCGAAGTGAAGAGGAAGACTCGAAAGGTAGCCCATA
CTGCCGTACAGTAATGCATAGTGAGTTTCGGGTTGTCAAGGACTTGGCATCAAAGGTTTATGGGC
TGGTAAATGGCCCTGTGTTCGTAGCTTTCTCCTCTATTTTGTCAATATTTGACCCGGGAACCTCC
CTTTGGGTGAATGAAGAGTTATGTCTTAGGTTGTGGCCTATATTT
Right flanking sequence: Indices 104710 -- 105209
TGTACCAGAAAGGTAGCGTGTAGAGGCTTGCGGATAAGTGCAGAGAAGACATGAAACCCAGCTGA
TCGGCAGAACCAGATACAGATAGAGACAAAAATACGGGCCTGGCACATTGACTCCCACTCGACTT
GACTCGAAAGGCGCATAGCTTCTAAAGCTGCTTGAGGGATTTTTGAAGTGATAGCTTCCTGGGGC
CTATCTCAGCTGAAAAACAACTCATTTAGCCTTCATTTATCCGTGTAGTCCACATCCAGAGGAGG
AGAATGCTCAAAGTGCAGAACTAGAGTCTTTTGCGCGCAGTTTCCGAGTTGGGAAGGAAGTTATG
AGAGAGAAGTAGCGGTTTTGATCCGTAGTTTTGGTTCGTGGACTGGCCTGGCTGAACCTGAGAAG
TCATAATTGTTCCGCCTATGAAAGAAGAGTGCCTCCGCACTTTCGGATAGGCCTATATTTTAGAT
GGGTTGTACGGGTCCTATCTGGGCAGGGCAGTGGTGTGATTATAG
Found at i:117046 original size:24 final size:24
Alignment explanation
Indices: 117010--117058 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
117000 AACCTGTTAT
*
117010 TAGCAATGTTTGTTTAGTTTTCTC
1 TAGCAATGCTTGTTTAGTTTTCTC
117034 TAGCAATGCTTGTTTAGTTTTCTC
1 TAGCAATGCTTGTTTAGTTTTCTC
117058 T
1 T
117059 CTGGTCTGCT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.16, C:0.14, G:0.16, T:0.53
Consensus pattern (24 bp):
TAGCAATGCTTGTTTAGTTTTCTC
Left flanking sequence: Indices 116510 -- 117009
GGAACGAAAGTAGCTGCTCTCCGAGTGAGAGCTGGCACCTAAAGCACTTCCTGGAAACCCAGGTA
CTACAACTAATACCACAGGCTGCATCTTGAAGAGGTAGGAACCCTCCTAATAACAAGGCTATTCC
CGTTCCCGGATCTTGTTTCTGCATTGGGTCTGCCGGGCAAGGTACGAAATATTGATATCTATCTG
GTCTTTTTGCATTCCAGGATTGTTATCTTCGTTAGTAAAATATAGGGCTGGCCGAACCGGAAATT
AACGGGATAACCCGGGGAATCTACAATCTTGAATTACAACAGGATCGACAAATTCCCTAATGGGA
AAACGAGACCAATAAAATCAAATAACTAGGCCTCTTTTGGTTCGTAACATTAGTAGTTACTCACT
GGGTCGGAAGATAGAATTTGATCCTTTATTCAAGAAGTACCCTCTCTCTGGTAGGCAAAGAGGCA
TTCCAAGAACTCACTCCTATGGTAAAGCAAGAAAAAACCTGTTAT
Right flanking sequence: Indices 117059 -- 117558
CTGGTCTGCTTACCGAATTTCTTTGAGAGCGCACCTACCTGTTTTTGACTTGTATAGCCATTCCA
GCTATGTGTCTATCCCTTAGCTATGGGCCTATCCCTTTTTAACACATCAACCTTTTACTGCTTAT
CTTGTCTATTTTATTACCTTGACTGCTTATCTTGTCTATTTTATTACCCTCAAAAACGACTTAGT
TTAGCCCTACTCACCTATTCCTACTTCTACGCGTTACGCCATTTCGTTCAAAGAAGCCTGTCTCG
GTTATCTTGACTGACCTCTGCTTCTCCTTTTATACCGCTTTACCTATTCCTCACAAGCCTATCTA
AGGCAAGGCTACCGCTCTAACACACAGAAATCCTTTCATTCCTATCTTCTTTACTAGAAAAAGAA
CTCAGTGTATTTCCGAGAAAATCTTCTTGATTTATTGTGTAGCTATATTCTACCTACCAACTACT
ACTTGCCTTGTCTCATGCTTGCTTTCAAGCCTGTCTCGCAACTCA
Found at i:117147 original size:19 final size:19
Alignment explanation
Indices: 117123--117160 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
117113 TAGCCATTCC
* *
117123 AGCTATGTGTCTATCCCTT
1 AGCTATGGGCCTATCCCTT
117142 AGCTATGGGCCTATCCCTT
1 AGCTATGGGCCTATCCCTT
117161 TTTAACACAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.16, C:0.29, G:0.18, T:0.37
Consensus pattern (19 bp):
AGCTATGGGCCTATCCCTT
Left flanking sequence: Indices 116623 -- 117122
AATAACAAGGCTATTCCCGTTCCCGGATCTTGTTTCTGCATTGGGTCTGCCGGGCAAGGTACGAA
ATATTGATATCTATCTGGTCTTTTTGCATTCCAGGATTGTTATCTTCGTTAGTAAAATATAGGGC
TGGCCGAACCGGAAATTAACGGGATAACCCGGGGAATCTACAATCTTGAATTACAACAGGATCGA
CAAATTCCCTAATGGGAAAACGAGACCAATAAAATCAAATAACTAGGCCTCTTTTGGTTCGTAAC
ATTAGTAGTTACTCACTGGGTCGGAAGATAGAATTTGATCCTTTATTCAAGAAGTACCCTCTCTC
TGGTAGGCAAAGAGGCATTCCAAGAACTCACTCCTATGGTAAAGCAAGAAAAAACCTGTTATTAG
CAATGTTTGTTTAGTTTTCTCTAGCAATGCTTGTTTAGTTTTCTCTCTGGTCTGCTTACCGAATT
TCTTTGAGAGCGCACCTACCTGTTTTTGACTTGTATAGCCATTCC
Right flanking sequence: Indices 117161 -- 117660
TTTAACACATCAACCTTTTACTGCTTATCTTGTCTATTTTATTACCTTGACTGCTTATCTTGTCT
ATTTTATTACCCTCAAAAACGACTTAGTTTAGCCCTACTCACCTATTCCTACTTCTACGCGTTAC
GCCATTTCGTTCAAAGAAGCCTGTCTCGGTTATCTTGACTGACCTCTGCTTCTCCTTTTATACCG
CTTTACCTATTCCTCACAAGCCTATCTAAGGCAAGGCTACCGCTCTAACACACAGAAATCCTTTC
ATTCCTATCTTCTTTACTAGAAAAAGAACTCAGTGTATTTCCGAGAAAATCTTCTTGATTTATTG
TGTAGCTATATTCTACCTACCAACTACTACTTGCCTTGTCTCATGCTTGCTTTCAAGCCTGTCTC
GCAACTCATATCAGCCAGCTTTTACGAGGGTAAAGAGCCCTAGCTGTTTCGGAAGCACTCCCAAC
TAAGAGTTTTGCTCCATGCGACTGTATTCCATGTAACATATCAAA
Found at i:117214 original size:30 final size:30
Alignment explanation
Indices: 117180--117236 Score: 114
Period size: 30 Copynumber: 1.9 Consensus size: 30
117170 TCAACCTTTT
117180 ACTGCTTATCTTGTCTATTTTATTACCTTG
1 ACTGCTTATCTTGTCTATTTTATTACCTTG
117210 ACTGCTTATCTTGTCTATTTTATTACC
1 ACTGCTTATCTTGTCTATTTTATTACC
117237 CTCAAAAACG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.18, C:0.21, G:0.09, T:0.53
Consensus pattern (30 bp):
ACTGCTTATCTTGTCTATTTTATTACCTTG
Left flanking sequence: Indices 116680 -- 117179
GGTACGAAATATTGATATCTATCTGGTCTTTTTGCATTCCAGGATTGTTATCTTCGTTAGTAAAA
TATAGGGCTGGCCGAACCGGAAATTAACGGGATAACCCGGGGAATCTACAATCTTGAATTACAAC
AGGATCGACAAATTCCCTAATGGGAAAACGAGACCAATAAAATCAAATAACTAGGCCTCTTTTGG
TTCGTAACATTAGTAGTTACTCACTGGGTCGGAAGATAGAATTTGATCCTTTATTCAAGAAGTAC
CCTCTCTCTGGTAGGCAAAGAGGCATTCCAAGAACTCACTCCTATGGTAAAGCAAGAAAAAACCT
GTTATTAGCAATGTTTGTTTAGTTTTCTCTAGCAATGCTTGTTTAGTTTTCTCTCTGGTCTGCTT
ACCGAATTTCTTTGAGAGCGCACCTACCTGTTTTTGACTTGTATAGCCATTCCAGCTATGTGTCT
ATCCCTTAGCTATGGGCCTATCCCTTTTTAACACATCAACCTTTT
Right flanking sequence: Indices 117237 -- 117736
CTCAAAAACGACTTAGTTTAGCCCTACTCACCTATTCCTACTTCTACGCGTTACGCCATTTCGTT
CAAAGAAGCCTGTCTCGGTTATCTTGACTGACCTCTGCTTCTCCTTTTATACCGCTTTACCTATT
CCTCACAAGCCTATCTAAGGCAAGGCTACCGCTCTAACACACAGAAATCCTTTCATTCCTATCTT
CTTTACTAGAAAAAGAACTCAGTGTATTTCCGAGAAAATCTTCTTGATTTATTGTGTAGCTATAT
TCTACCTACCAACTACTACTTGCCTTGTCTCATGCTTGCTTTCAAGCCTGTCTCGCAACTCATAT
CAGCCAGCTTTTACGAGGGTAAAGAGCCCTAGCTGTTTCGGAAGCACTCCCAACTAAGAGTTTTG
CTCCATGCGACTGTATTCCATGTAACATATCAAAAGCGCAGCCTACACTGATTCTATTCCCTAAG
AAGAAACTGCTACTCTAGAAGAAGGCGCTTTATTACAAGCTATGA
Found at i:121116 original size:25 final size:26
Alignment explanation
Indices: 121065--121122 Score: 91
Period size: 26 Copynumber: 2.2 Consensus size: 26
121055 GACAAGTATT
*
121065 TGTTTTGAACGGTGCCTACTTTCCTA
1 TGTTTTGAACGGTGCCTACTTTACTA
121091 TGTTTTGAACGGTG-CTACTTTACTA
1 TGTTTTGAACGGTGCCTACTTTACTA
121116 TGGTTTT
1 T-GTTTT
121123 CTATTCTAAT
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
25 11 0.37
26 19 0.63
ACGTcount: A:0.16, C:0.17, G:0.21, T:0.47
Consensus pattern (26 bp):
TGTTTTGAACGGTGCCTACTTTACTA
Left flanking sequence: Indices 120565 -- 121064
TCATATGGAGTTCTGGTCAAAATAGGCATTTGGTAGTACAGCTCAAATAGCGAAAGGCAATCCAT
TCTAAAAGCTCATTCTACAATGAAGTACAAAGAAGTGTCAAGATTCAACCTATGCGAGCAGATTG
CAGTCTTTGCTAGGGTAAGCCCTAAAGGGGGAGAGTTCTCCAGGCCCTTTCTTTCCGACACCGTT
TTGTGCTCGACAAAAAGCACTTACAAGCAGTGTCAAGATTTGAATATGGTGATACCCGCAAGGCT
CGCAGGAAAAAGTGGCACAGATTTGTCCTAAGTTAAGTACGTGTATAATTTCTCTAAAAAGAACT
AAAACGCGAGACATTCATTATTTTGTATTCTCTCTTTAATCAAATGAGCATCTTCCTCCTTAAGA
TTTGTGACTGCATTCTTTGAGCAGCTTAGGGAGCTAGCGAGTTAATGTAAGTTTCTCCCAGCCAG
TGTAAGGAAAAGAAGAATAAGTGCTGCGAGGGCGAGACAAGTATT
Right flanking sequence: Indices 121123 -- 121622
CTATTCTAATAACTACACAACGCACTGACTCTTAGACAAGAATCCTTTTTTAGATAGCACTGGCA
CTTTCCATACTTTATTACTGGCGCACTTAGACATATTACCAGTTTCTCCGCTTGATGCTTTACCT
GAATTGGCTGGTAAAGTATTTTGTGAAGTCAAAGTACATAATACATGGAATTGACAACGTTTCAA
GTAGAATTGTTTTGAAGAGCGAGAACGGCAAGCAGAGTTTTGAAGGAGCCCCTTCCTTTTTGTTT
GTGCAAATTCTTCGTCCTTTTTGATTTAGCACTTCCTGTCTGTCTTTCTGCTTGTAACTCTTCGT
TCTGTCTTTTACTCGTGGGTAACATAAAGTTTCATTCTTTTGATACAGATGGATGCATAGAACAA
GTACGAATAAGAAATCTCAGAGGTCAGAGCGGATCAAAGATCAATAAGAAAAACGAAACCGAAGG
CGAATCCAGAAGCAAAAGGCTAAGACAAGAAGAGGTGTTTCACAA
Found at i:122260 original size:33 final size:33
Alignment explanation
Indices: 122223--122291 Score: 113
Period size: 33 Copynumber: 2.1 Consensus size: 33
122213 CATCATTCCT
*
122223 TATTTCTAAACCAATCT-AGTAATGCCAAGTGTC
1 TATTTCGAAACCAATCTGA-TAATGCCAAGTGTC
122256 TATTTCGAAACCAATCTGATAATGCCAAGTGTC
1 TATTTCGAAACCAATCTGATAATGCCAAGTGTC
122289 TAT
1 TAT
122292 AGAAGATTCC
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
33 33 0.97
34 1 0.03
ACGTcount: A:0.33, C:0.20, G:0.13, T:0.33
Consensus pattern (33 bp):
TATTTCGAAACCAATCTGATAATGCCAAGTGTC
Left flanking sequence: Indices 121723 -- 122222
CAGCCATTTTTGAATACTAATATATCTGAGCCGCCTAGCGTTGACCAGACTAGCGTTGACCATAA
GGTCCTTGCAATCAGAGAGTTGTCTAGAATCCTCGGCCATGCATAGAATTTCAATGGCAGTGCCT
GTGCTAATCAGATAAGAATGTAATAGTTACCCAACTCCTAGCCACTCTCAAGCTGCATACGCATA
AAAGCCTTTGTCCCTAGTCGGATAAGTGTCACCGACGAGAAAGACTATCATCTAGAATTACTAGC
TAATCCATGAATAAGCCGGTATTGACCTAGCAAGAGTACTTTATTTACTAGACACTTGATTGAAT
AGCTACTATAGATCAAAGCCCCACTATTGTATGTATTATCGGGCCAGACTATTAAATAGAACAAA
GCAATAGAAAGAAGAAGATACTGGTAATGTCAATTTCACATTCTGTATTGTTGAATTCTCTCTGT
GTACAAATGCCAGTCTATATATAAAACGAGATACACATCATTCCT
Right flanking sequence: Indices 122292 -- 122791
AGAAGATTCCTCTGGTGAGGACCATTAGGACCACAGTGTTGCGTTGGCAGTCAGTAGGAGAAGTA
TTGTAACAGCACAGCATTTTATTCCTCTCCAATTGGCTTGTCAGCTGGTATAACTGGAGTGTGCA
ATTTATCTCTAACAGCCCCCCCACAAGCGAAAGGGGCTGCTGACACCTTGAGCTTGTCACGAATC
AGAAGAAACCGTGGAGTAGTTAACGGCTTGGTCATGACATCCGCTAACTGATCTTTAGAACAAAC
AAATTGAATCAAGAGTTGCTTTGTCTGAACCCGTTCTCGTATGAAGTGATAGTCTATTTCCACAT
GCTTTGTTCTAGCATGAAACATCGGATTAGATGCTAGGAACGTCGCCCCTATGTTATCACACCAT
AGAATCGGTGGAGAAGAGCAACAAACATGCAGTTCTTGAAGAAGATATTGAAGCCATATTAGTTC
AGCACTTGCAAGTGCTAATGCTCTATATTCGGATTCAGTGCTTGA
Found at i:136934 original size:16 final size:16
Alignment explanation
Indices: 136923--136959 Score: 74
Period size: 16 Copynumber: 2.3 Consensus size: 16
136913 GCCGAGTTCT
136923 TCCTGTGCCGAGCTAC
1 TCCTGTGCCGAGCTAC
136939 TCCTGTGCCGAGCTAC
1 TCCTGTGCCGAGCTAC
136955 TCCTG
1 TCCTG
136960 CTGCGTTGGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.11, C:0.38, G:0.24, T:0.27
Consensus pattern (16 bp):
TCCTGTGCCGAGCTAC
Left flanking sequence: Indices 136423 -- 136922
GTTGATTTCAGCTTCATTTTCTACCTATTTCTATGTAACAGGCAGTAGGAGCACTTAGTACGGGT
GGCTTTTTGAAACTTCTTTCGTGATTAATCTTTTGGTACATCCACTATTAGAAGTTCACTTTTAC
CTAACGGCGGGGAACCAATTTCTTTGCAGGGGACACGGGTGCATGAGCATGAACCATGTTCCCTA
ACGAACTCTGATTCTCCAGATGCATACAAACCATTTTGATATGCCAAGTGCGATTTGCATCTATC
TTCTTGTTCTCTGGCCTACAGTGTTATTCTTGCATTGCTCCTACTCAGTTAATGGAATAAATACT
TCTTTTTCGGTGGTACTTGTTTGAATGAATGAAAGGCCCCAGTCTAGAGAGCTCAGCCGGCGCCA
AGTGAAAGTGAAAGTTCTACAGCAAATAGAAAGGGCCTTCCAGTTCAGCGTGACGGGTTTTCTTT
TCTCTTTCCAGTTACTCTCGTTCCTTTGTCTTCGAGCCGAGTTCT
Right flanking sequence: Indices 136960 -- 137459
CTGCGTTGGGATACTTTCTACTAAGGAGATAACCCATCCATACTGCACCTCTCTCTTGCTCTAGC
TTCTACTGCTCTCCTACACACCTCGTCCTACCCCTACCCCTGCACCTCCTGCACCTACAGCTCCA
TTTACTCCTCAGGCGCTTATCGCTCAAACTCAATCTGCCTCTCCTGATCAGTGGTATCTTGACTC
TGGAGCCTTCAATAGGTATAGATTGAAAAGCCCGCTGCGTGGGAACAGACTTGTACCATGCTTCT
GTCTTACCACCCAAATACTCTTTTCTTCAATAGAAGACCAAGATTCAAAGAAAGTAAATCGTCCG
AGGGGCGACGAAATATGAAGTAGTGATCTTACGGAGTCCAATTATTGAAGTGGAATTGTGTAAGA
AAGGAAAGAGGAAGATCAGGCAGGGGTATAGTGCTCTAGTAGTGCTTACTCATAAATACCAATCT
GAAACTCGCTAAATGCTCGTAGAAATGAGAATAGAAAGATTGTAA
Found at i:169081 original size:15 final size:15
Alignment explanation
Indices: 169061--169094 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
169051 ATTAACTATG
169061 ATACGAGAAAAA-GGA
1 ATACGA-AAAAATGGA
169076 ATACGAAAAAATGGA
1 ATACGAAAAAATGGA
169091 ATAC
1 ATAC
169095 TTCGGATAGC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 5 0.28
15 13 0.72
ACGTcount: A:0.59, C:0.09, G:0.21, T:0.12
Consensus pattern (15 bp):
ATACGAAAAAATGGA
Left flanking sequence: Indices 168561 -- 169060
TATACCTCATCATTCGGCTAAATAAATGTTTCGGGCTCGTGGGATGATCGCACGATATGAGCATG
CATGCTAATTTCTTCCAATCTACCATTGGAGAGCAAAAAAGGGCCCTGTGTGGAGGGGATAGCCA
AAATAAGGCTTTAGACGATGGGGACAGACTGCGATCGGTGTGGATCAAGCTCATAGGTTTGACGA
TTCCATTGTGTTTGAAGGTTCAGTACTTCGGTATAGTACTGGAGTTATCTCAAAACACGGCTGAG
CACTTCTTCTTGAGAACAGCGAGAATCCGTATCGGGGTGTGTGATGATAGAAAGGTACTAACTGA
AATCTGGGCCCGGTACAGAGATGTGCAAGGGGAGTGGTGTAGGTACGCTGGATGTGTCGGAATAG
GTGGAGGAAATCTCAACATGACGACGTAAAGAAAGAATGCATTGGCGCCGTAAAGTTCTACTGCA
TTGGCCCTATCAGTTACTTTATTGGGAGAATACTAATTAACTATG
Right flanking sequence: Indices 169095 -- 169594
TTCGGATAGCGCACCGAGCTTGCTGCCGTCACTGTCTTTCCCTTCAGTGCTGCTGTCAAAAAGAA
TGCCCGTCTGTCCTCCCATATAGAAGAGTCCGGACTTTCTCAAGGAAAGCCTTACCGACCATGAG
TTCCGCTCTACACAATAGCTCCTCTTGAAAGACTCGCGCTACACTCAACTTCAAAACCGTACCAG
CATTCAGTTATTGATAGACAGAAAAAGGGGCATTTTGACTTTCCTCTTTCTTTTCGGTCATAGCA
AATTCCTTTTAGTAAGTTAAGTAAGCAAATGCTAAGTCTGCTTCTGTTGAGGATAGAAAGAGTGA
AGAGTGTTATCTGTGTGAGATCGATTCGTTTCGAAACTGAGAATATTCTCTCTTCTTTACTAATA
GTTGTTTCGACAAGGAAAAGACAGAAAGATCAAATCTTAACACTTTGCACACTTATGGCAACACA
AAGAAAGTGTTTCACTCAATGAAAAAAGGAAGGGTTTTGCTTCAT
Found at i:171266 original size:12 final size:12
Alignment explanation
Indices: 171249--171280 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
171239 AGAATTAACA
171249 AAGCTAATCGAG
1 AAGCTAATCGAG
171261 AAGCTAATCGAG
1 AAGCTAATCGAG
171273 AAGCTAAT
1 AAGCTAAT
171281 AGCTGACTTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.44, C:0.16, G:0.22, T:0.19
Consensus pattern (12 bp):
AAGCTAATCGAG
Left flanking sequence: Indices 170749 -- 171248
ATACAGCTGAGAGGTGATAAGGGTTTTCAAGATGAAGGAAGAAGTTGCCACCTAAACTCTAAAGC
ATTGCAATCCAATTACAATTACAAGAGTTCCGCCTATGAGAAAAGGAAGGCACTGGACCTTGGTC
ATGAGACTAGTGAGAAGCATCTCTCTATCTAATAGACATAGCAGTAATGAGCTTTAACTGCAACT
CTTATTCCGCTCTCAAACTGCCTTATGAGTGGTATTCTGCCTTTCCCTACTTAATACTACGCCAT
ATGCTTACTAAAACTTAGAAGCTCCAGCTCCACTTGCATATCGGTACGAACAAGCTAAGGGCAAA
TCTTATTGTTGGCTTACGACTCGGTAAACGGCTTCACTACTACAAGATTGATAACTGGAATGGAA
TCTCATATCAAGCCTACTAATCTGAGAGCTAGCAACAAACCTTACCTCTTAAAGCCGAATACCTT
GGGACAGCTAAATTCAAAGCTGATTTATGAAAGCCAGAATTAACA
Right flanking sequence: Indices 171281 -- 171780
AGCTGACTTGAATTCCCCTAAACGGCATAGAGAAGTTGGAGCAACAATTAAAGCTCTAGAAAAAA
CTACTGCTGTAAACGCCAGATAGGCTTGCGATTCTGATACCGAGAAGCAAGAGTTAGAACCCCTA
ATTCAAGCAACCGAGGGAGGCGACTACTCAATTAACTACTGGAGTTCTTCTTTGTTGCTTTGAAT
CTTATATCGGGCAAGGAGAATTCTAGCTGGATGGATAGGCTAGGTAGTGCTCTATTTGTCTATGG
AATGAATTGGCAGCAGAATTAGAAAGAGGGTTGGCTAGGTAAGCTACTACTAGGTAAGCTACTAA
TAAAGTGCAGGTAAAAGACCTTTTCTTTTTGAGAATCAATGGTGGAAATGCAACGCTCCGCGCCT
TGTTCAGCAATACAATACAGGGTCAATTACGAAGAACCGATTGATGAGCCAGTGAAATTGCATGT
GAAAAGATAGAGAAGTGGGAAAGTCAAACATTGGGCTACAAATAT
Found at i:171595 original size:15 final size:15
Alignment explanation
Indices: 171575--171604 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
171565 AGAGGGTTGG
171575 CTAGGTAAGCTACTA
1 CTAGGTAAGCTACTA
171590 CTAGGTAAGCTACTA
1 CTAGGTAAGCTACTA
171605 ATAAAGTGCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.27
Consensus pattern (15 bp):
CTAGGTAAGCTACTA
Left flanking sequence: Indices 171075 -- 171574
CTTATTGTTGGCTTACGACTCGGTAAACGGCTTCACTACTACAAGATTGATAACTGGAATGGAAT
CTCATATCAAGCCTACTAATCTGAGAGCTAGCAACAAACCTTACCTCTTAAAGCCGAATACCTTG
GGACAGCTAAATTCAAAGCTGATTTATGAAAGCCAGAATTAACAAAGCTAATCGAGAAGCTAATC
GAGAAGCTAATAGCTGACTTGAATTCCCCTAAACGGCATAGAGAAGTTGGAGCAACAATTAAAGC
TCTAGAAAAAACTACTGCTGTAAACGCCAGATAGGCTTGCGATTCTGATACCGAGAAGCAAGAGT
TAGAACCCCTAATTCAAGCAACCGAGGGAGGCGACTACTCAATTAACTACTGGAGTTCTTCTTTG
TTGCTTTGAATCTTATATCGGGCAAGGAGAATTCTAGCTGGATGGATAGGCTAGGTAGTGCTCTA
TTTGTCTATGGAATGAATTGGCAGCAGAATTAGAAAGAGGGTTGG
Right flanking sequence: Indices 171605 -- 172104
ATAAAGTGCAGGTAAAAGACCTTTTCTTTTTGAGAATCAATGGTGGAAATGCAACGCTCCGCGCC
TTGTTCAGCAATACAATACAGGGTCAATTACGAAGAACCGATTGATGAGCCAGTGAAATTGCATG
TGAAAAGATAGAGAAGTGGGAAAGTCAAACATTGGGCTACAAATATCGAGTTTATTCATAATCAC
CTTGGCCTCTCTTAACCGCATCCCGAAATCCTTCTTCCATGACTCCAAATTCTGTTTGAGCCGCC
TGAACTCCCTATCAGGGTTCAAACCAGCATCTGCTTTGCCCGATTTCACCTCGACCAAGAATTTG
ACATCATCAGCAAAAACCTGGCTCCTCTGGTCAAACTCCTGGCTCAACCGGTTGATTATACTGAA
ACCTGCGCTCATTTCCCGGCCAACAGCAGCCCGGGATCCACGGGGCAGGACAAGGGGCATTATGG
TCATTTGATGAGGCAGTGGAATCCCACCAGTGACCAAACCACCTT
Found at i:178034 original size:21 final size:21
Alignment explanation
Indices: 177998--178055 Score: 73
Period size: 21 Copynumber: 2.8 Consensus size: 21
177988 TCATCCGGTG
** *
177998 AGAGTGCACCCACATCGGGTTC
1 AGAGTGCACCTGCATC-GGATC
178020 A-AGTGCACCTGCATCGGATC
1 AGAGTGCACCTGCATCGGATC
178040 AGAGTGCACCTGCATC
1 AGAGTGCACCTGCATC
178056 TCGACAGGTT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.16
21 26 0.81
22 1 0.03
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.19
Consensus pattern (21 bp):
AGAGTGCACCTGCATCGGATC
Left flanking sequence: Indices 177498 -- 177997
CACTCAAGTATTGGAAAATCAAACCCCCTATGAGCTGCTATTCAACAAACCGCCTTCTTATGCAG
CTATAAGAAACTTTGGATGCTTGTGTTACATTAAATCGCGCACTTCTGACAAATTGGAAAGTAGA
AGTAGAAAATGCGCATTTGTTGGATATCCGTACGGAAAGAAGGGATGGAAGGTGTTTGATTTGGA
AACTAAAGAGTTTCTCATTTCTCGAGATGTTGTTTTTTGTGAGGACAAGTATCCCTTTTCTGAGA
TAGGGTATGAGAGTGCACCCGCATTGGGTCTCTCGGGTCAGAATGCACCCAGAGTGGGTCAAAGT
GATGATGCATCATTTATACAGCTCGCAAGGGGACGAGTTGAACATCTGCTAGATGATGAGCGTGT
GGAAGCAAGGGGGAGTAGTCCTGATTTTGATGATTCTGAATCCACAGATTATCAGAGTGCACCAG
CATCGGATCACACTTCGGGTCACAGTGCACCCGCATCATCCGGTG
Right flanking sequence: Indices 178056 -- 178555
TCGACAGGTTGCATCCAGACGATCTCGCCAACCTCCTGCTCGTCTACAAGACTACATTTGCTACA
CTGCAAAATGTGACCCATCTTACGCTCACCCCACATCAGCAGCTACCTCAGGTACTCCTTATCCT
ATAGCTCATTATGTAAATTGTGACAAATTTGCAGTTGCACATAGAAAGTTTTTAGCTGCAGTGAC
AGCAAAGAAGGAACCCGAGCACTTTGGAGAAGCCATGAAGGACAGTAATTGGAGAAAAGCAATGC
AAACTGAGATTGAGGCACTAGAGCGGAATAACACTTGGTCCATTGAGGATTTACCGTCTGAGAAA
AAGGCGATAGGGTGCAAGTGGGTGTATCGCATCAAGTACAACTCAGACGGGTCTGTGGAAAGGTA
CAAGGCACGGCTAGTTGTGCTAGGAAACAGGCAAGTTGAAGGAATTGATTTGAAAGAGACATTTG
CTCCAGTTGCAAAGATGGTCAGTGTTCGCACCTTCTTGGCTGTAG
Found at i:184302 original size:24 final size:24
Alignment explanation
Indices: 184275--184321 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
184265 CGAATATTGG
*
184275 ACCTGAGCATTACTTGCTTTGTTC
1 ACCTGAGCATTACTCGCTTTGTTC
184299 ACCTGAGCATTACTCGCTTTGTT
1 ACCTGAGCATTACTCGCTTTGTT
184322 TCCAGTTAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.17, C:0.26, G:0.17, T:0.40
Consensus pattern (24 bp):
ACCTGAGCATTACTCGCTTTGTTC
Left flanking sequence: Indices 183775 -- 184274
TTGTATTTATTGGCGCCCTGCCTTGTTCAATATAGCTAGCGAGCGGAGAACATTTACTTATGTAT
GTGCGTGCCCTCTTTAGTTCATATTGCCACTTTAGTTCATATTGGCTGGCACTTTACATAGATAG
GTTGATTTACCTTAGGGAAGCACTAGTAGGCAAGCTACTTACCTAACAAACAAGTTGAACCGCTT
AGAAAAGTAGACCGCAAGCAAAGTAGGTGACTTGACTGTAGGTAGGTATAAGTAGGTAAGCGGCA
ACCAACTGAACAAAGTAGGCTAGCTATAAACAAATCACTTAGTTTACCAGACGACAGAACTAAGT
TGACCGACCAACCCACCCAGCTCATACTGTGCGTTAATTGACTGACTCCCTTCTTCATTGAACGA
AGAGAATAGATTGACTTGCATTTACCAATTGAACGAAGAGAATAGATTGGCTTGCGTGCGTGTAT
TTACCTACCAATGGATTTCATTGTTAGAACATTTCCGAATATTGG
Right flanking sequence: Indices 184322 -- 184821
TCCAGTTAATTACTTGAATTTACTTATATATCTTAGTTCATTGGGCGCACTCACTCTAAGAAGTC
TGTCAATGAGCACAAATACTCATCTATGAAATGCACCGCTTGGAATTCCAATAGATGAGAACACA
CCCCAGGGTTGAGTGCTAATCCTTGCTCTTCTTCTAGTTGCTAAATATATCTAGTACTCCAACCA
ACAGGTGGAAATGAAATACGAAAGAGGTAATCTTCTACTCACTCAGGCTATTCATTGGTGAATAA
CCTCACTTCCCTTGAGATTAAATGAACGACTAAAGCTAGGAATGCAAAATGCAAGAAATTCCGAT
TGATGAAAGCCTGTATAATTCAATCAATTCTTTCTTCTAATTACTTCTAAAAAAAAAAGGTACCA
CAATCCCGCCCAAACGGATTATTGACTCTATCTCTGTGGAAAACCGCCGTACCTTTCTTTGAAGT
TTCAATTCCTCACTCAGTCCTATCCCCTCTTTCATACTTAGCTAT
Found at i:185225 original size:14 final size:14
Alignment explanation
Indices: 185206--185239 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
185196 GTAGGCTTCA
185206 ACAGTGCCTTGGCC
1 ACAGTGCCTTGGCC
* *
185220 ACAGTGCCTTTGCT
1 ACAGTGCCTTGGCC
185234 ACAGTG
1 ACAGTG
185240 GGAAAGCACT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.18, C:0.29, G:0.26, T:0.26
Consensus pattern (14 bp):
ACAGTGCCTTGGCC
Left flanking sequence: Indices 184706 -- 185205
GTACCACAATCCCGCCCAAACGGATTATTGACTCTATCTCTGTGGAAAACCGCCGTACCTTTCTT
TGAAGTTTCAATTCCTCACTCAGTCCTATCCCCTCTTTCATACTTAGCTATCCATTGAATTTAGA
TGGTAAGGACCTCGTATCAGATACACGGAATTGGACAGCACTGAGGAGAGTTCCAGATTTGAACG
ATTTATTCTGGATATATATATAAGCCGACAGCCCCTTTGTTGTCCAGCGTGAAAGGAGCCCTGCA
GTGAAGGAAAATAATCCGACATCGGTCTACTATAATAATCTCTAACTTAGTAAATCTAATTAAGG
AAGCTTTCATTACCACCCTTTGACCTAAAGAAAGAAAAGTGCCTATCAAAAAAACCAAAGACCAA
GCAATGGCACTCACTACGTGCGACATCAGAGACCACCGGCAACTACTCCGGCAAGCCCTTCTATT
CCTCCAATCAGAGGCTATTTTCTTTCTTGGCTACAGTAGGCTTCA
Right flanking sequence: Indices 185240 -- 185739
GGAAAGCACTAGTGAGTAGTCTATTCTAGTAATCAGCAAGTAAAGGCGGTTATAGAAAGAGGTGC
GGCAGGCAGGAAAAGAAATAGAAATTCAAAGTGTTTCAGCAAAGAAGAAAAAGACAGATTCCACT
AGAGATGGCTATTTCTACCTTTTTTCAGAAGATTAAGTGGAACTTTCTGTCTTTAGCAAAGAGTG
AGATCGGCGAGATGGCTGCTGCTTCTTTGTATGTATGGCGAAGGAGGAAGGAGACAGAACTTTTG
ATCTTGACCTTGGCTCTTTCCTTTATTGTCAGCGTGACTTCTTTTCTTGTGCTACAAAGTCAATG
AGCAATTCCAATCTTTGGTCTTTGATGGAAGACAAGTCCTATAGCGTGAGAACTTATTCTTGCTT
GGCCTTGCTCGCGCACTTTCTTCTTGCTTTCTTTGAATGCATTCTTTCTCGCCTATTCAATTTCT
GCGTGAACGAACTAAAGAACTTGCTTGTTGTGGAGAAAACAGACA
Found at i:200301 original size:27 final size:27
Alignment explanation
Indices: 200270--200321 Score: 95
Period size: 27 Copynumber: 1.9 Consensus size: 27
200260 TCTTCAGCTC
200270 AGCCAGTGTCATATTGCTTCACTTGTG
1 AGCCAGTGTCATATTGCTTCACTTGTG
*
200297 AGCCAGTGTCATATTGCTTTACTTG
1 AGCCAGTGTCATATTGCTTCACTTG
200322 CTTCCACTGT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.19, C:0.21, G:0.21, T:0.38
Consensus pattern (27 bp):
AGCCAGTGTCATATTGCTTCACTTGTG
Left flanking sequence: Indices 199770 -- 200269
TGTGAAGGGTGAAGCGTTGGCTTCCGGGATTTTGACATGCCACAGGGAATCCTTCATTCTTTCAA
GAAAAGCATACAGAGACAAGCATACCTTTTATCCACAAAGAGCACTAATCCGTTACAACCAAAGC
TTCTTACCATTGTGAGAGTATAGCATATAGTGAAAAAGGGAACAGGCAGCTTATTACTTATCTAG
AAGAGAAGAAAGCGGTAAGGGAGGAGCTGTGGAACAAGGCCCGATCTCTTTCACTTGGTTTCACT
TACTTACCTTTCAAGAAAGGGCATTCTTACTACGGCACACTTACGTTCATGTTGAAAGTATACAA
TATTGAACTCAGTTCCACTTCGGCTGGATAAAGGGAAATGCATTGAGAACAGAATCCATACCTGG
TAAGAAAAAGCATTCTTACACTGGGGCTGTGGAGTATAAGTTGCAACTTGATGCTAATCTGCACA
CTCTTGAGAGCAACTGGCACCAGCTAGAAACTTGTTCTTCAGCTC
Right flanking sequence: Indices 200322 -- 200821
CTTCCACTGTTAGAGTACTTCAAAGAAAGGAGAGCTCTTCCCTGCTTAGTTCCTTATCATCCCTT
TATTCCGCATACCAGAACAACCCTTACCCTGTTACACACTGTACGGCTCAGCATTGACTGGACTA
ACAGGCACCTCCACACACCATCCTAAGGAACAAAAAAATGCCAAGGGACTCAACCTGTTCTTCCC
ACCAGTCCTATTCTCTTGCGCCTTAAAGTAGGGAGGGGTTTTGCCTCACAAATGAAATGGGAATG
GGATTTTCTCATTCAGCACGGTAATTCCTACACTTTGATGAGCACAGCGCAGTTCACGTTACAGC
TACTTTGTTGTCTGCAGCTATACTACTAGATTCTCATTGATCGTAGCTAATCTGATTCAATGGTT
ACAACAGCCGATAAGCAAGCAGCTTTGTCGTCTAATAAGCTGTATAGACTCGTTCCAATAAAAGA
AGCTCGTTCGGGGTCGGTTAGACCAACCAAGTCTGCTATGTAAAA
Found at i:223072 original size:24 final size:23
Alignment explanation
Indices: 223039--223090 Score: 95
Period size: 24 Copynumber: 2.2 Consensus size: 23
223029 TTGCAAATAC
223039 CCTTTTCACTCAGTGAGGAACTA
1 CCTTTTCACTCAGTGAGGAACTA
223062 CTCTTTTCACTCAGTGAGGAACTA
1 C-CTTTTCACTCAGTGAGGAACTA
223086 CCTTT
1 CCTTT
223091 GTTGTCACTC
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
23 5 0.18
24 23 0.82
ACGTcount: A:0.23, C:0.27, G:0.15, T:0.35
Consensus pattern (23 bp):
CCTTTTCACTCAGTGAGGAACTA
Left flanking sequence: Indices 222539 -- 223038
TTTTGTTTCAAGTCTATTATGAAATAGAAAGACTTTGCCTGTATTGGTAAGGGCACATGCTCACC
TTTGGTTAGTTCACATACTCTCACATCAATGTGCACCTTCTCCTTAATACGTGGCCCATAGAACA
GTGCCTTTACTCTCACATAGGTACCCAGAGTGACCACCAATGCTTGAGTTATGTACTTCCTTTAG
AAACTGCTCTCTAAAACTCCCACTCTCCATAACATCTTAATTGAATCTAGTCCGGGTTGAATCTA
TCTAGTCACCACCACGGTTTGAATCTATTGCTGCATGGTTCATTTTCCATTACTACCCATTCTGT
CTTGCAGCTGCTGTATCCACTCATCCTCATAATAACTATCTTCTCCCCACTGAGGAAGGATCTAA
GTAAGGGCGGAGCATTAAGCACCAGTCACCAAAAGAGTAGAGCCATCTTTCGGCATCTGCTACTT
TGTTTGTACACCCGTTTGTTTGTAACCTAAAAAGTTTGCAAATAC
Right flanking sequence: Indices 223091 -- 223590
GTTGTCACTCTATACATGCCTACGTTACTCGTCTGTTACGAACGAAAAGCCTCACCAAGTAGTAT
TCGTAGACCCCGTGATGATCTCCCAAGTCCTACTATCCCTTTGGTTGTAGAGGGAAATCACCTTA
ATTTGGGTGCACTTCTTACAAGTAGTAAACCCATCCTCGATCTGAAGATGGAGGATATCATGAGC
GACGACGACGCCTTTTCTCGTGTCCATACTCATCTCACTGACATCAACTCGCAGCACCCCCAGCT
ACTCTTTCTGGTGAACGAGATGCCGTAGCGCCGCTTCGCGCCTTGGGTGGACAGGGGCTTCGCCA
ATACGTATACGAGGCTGATAGACTGAGAGGACCTGCCTTCCATTACTACGTTCCAAGCCTTACCG
AACATCCCTGTCAGCTGGGCTCTTGATCATCCGTAGCTGCTCTTTCAGTTCCTTTTTATGAAAGC
GATGCATGCCCTGGACTACTTTCGCGAAGTAGAAGTCTGGCTTGG
Found at i:232450 original size:17 final size:17
Alignment explanation
Indices: 232428--232475 Score: 71
Period size: 16 Copynumber: 2.9 Consensus size: 17
232418 TCTATCTATA
*
232428 TCTATATATATGATTTT
1 TCTATATATATGATTAT
232445 TCTATATATATGA-TAT
1 TCTATATATATGATTAT
*
232461 TCTAGATATATGATT
1 TCTATATATATGATT
232476 GAGAATGGAA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
16 14 0.50
17 14 0.50
ACGTcount: A:0.33, C:0.06, G:0.08, T:0.52
Consensus pattern (17 bp):
TCTATATATATGATTAT
Left flanking sequence: Indices 231928 -- 232427
GATTCCTATCCTGAACATCTTGCATAATTGATTGGTGAATCAAAAGTCTAGTAATGGAAATCCCC
TTTATCCTTTCGTTCATGATTCGAAACATACATATTATTACCAGGTTGATAATCCTCCTATAGAA
ATTGATTCCAACGAGAGAGTTTTATGAAATAGAGCTCTCTAACACTTGCACACCCTATTCTGTGC
ATCCACCATGGTTGGACCTTCAACATGGTTGTTCCCTGCATCAAGTCCATAATAAAAACCACGAA
GAGAGAGCCAATAACTAGTTACAGGAAAAAAAGAAATTCCCCCGCCCGATTGAACGAAGGAGCCT
GCGAAGCAAGGCGCACGCACTTTGCTCGGGGTTACAGTATCCGGAGACCCAGCCAGGAAAAAAAA
GAAGAACGTAACTAGATATAGAGTGATTTAGGCAAAGCAACGAAGTCGACACACACGAATGAATC
AAAGGGATACCGCTTGGGAAAGAAAAGAGTGTAGATCTATCTATA
Right flanking sequence: Indices 232476 -- 232975
GAGAATGGAATTTGCCCACTTGTTTCACCCACCGAGTTGGAGGTTTCCCTTCTTACCGGGCGGGG
TTTCACCGCTTCGCGCCTGACATAAAGAAGTGTTTCCGTACTAGTCAAAGAACTCAAAGAACAAT
GCCAATGCGCGAGCCTGGAATGAGTGAGTGGCCTACCTATTTGTGTTTAGTAAGGCATTGTTTTG
AGTAAGTCATTTCAAAGTAGTAATTAACTGAGTCCAATAGCAAATCCGCAGCTTTCCTACTCAAT
AGCTTTGTTGGTTGGCCTATGATCATAGTCTTCGTTTTTTCAGAAAGCTATTCAGGTTTTGAAAT
GCCTTACAACGTCTCAGAATTCTAAGTAGGAAAAGGACAAGTCAAAAGGTAAGGAGATTGAGGTT
GAAGAAGGGGATGGCCCTAGTGAGAAACCGAAGTTCACAAAAGCCGATTACAACATCGTGGCACA
TCTACGAAAGATACCTGCTCTGTTAAGTGTTTTTGATGCACTAAT
Found at i:250993 original size:21 final size:22
Alignment explanation
Indices: 250955--251002 Score: 53
Period size: 21 Copynumber: 2.2 Consensus size: 22
250945 TAGCGGTAGC
*
250955 AGTAAGGCTCGACTTCCAAAGG
1 AGTAAGGCTCGACATCCAAAGG
* * *
250977 AGTAA-GCTCTACATCCATAGT
1 AGTAAGGCTCGACATCCAAAGG
250998 AGTAA
1 AGTAA
251003 TCTGAGTTCT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
21 17 0.77
22 5 0.23
ACGTcount: A:0.35, C:0.21, G:0.21, T:0.23
Consensus pattern (22 bp):
AGTAAGGCTCGACATCCAAAGG
Left flanking sequence: Indices 250455 -- 250954
AATTTCCACTTAATCTTCTCGTTCAACGAAAACAAAGCGGACGGAGCTATCTTATATTCACTCAC
ACCGGCAAGCAAGCGGAAGCCAATATTTCGTTGTTAGTATAGATACTACATGGTCTCGATCGTTG
AATCACGAAATGGAAGATGTTATACTGGCCTCAAAGAACTATTAACTGGGAAGGTACTTTGGATC
ACCAATCCCAAGTGATAGGCGAAAGTGAAGAGAATCACAAAAGCGAAACAATTCTCAAGGGTCCG
TCCAGAGCGAGCGGTAATACCAGACTCCTTGGATTTTCTCATTATTACACATCCAGGGAAAGCTT
CAGACTTGAATTGACAGGCAAAGAAAGATAGTTTAGTCTTTCCCAATATGGGAATTGGTGATATT
CAAGAGGGGGGAAAGCAATAGGCTTTCAGGGAAAAGACCCTCAGAACAGTGCTAGCTTGCTGTAT
GATGAATTTCAGAGGGATTTAGATGCTATAGCTCGTAGCGGTAGC
Right flanking sequence: Indices 251003 -- 251502
TCTGAGTTCTTTGTGATCAATACTGCTTTTCTTGGTCGGTTTGCTAATCTGATTTCTTGCTAGAT
CCATCAGCCAAATAATATAACACAGAATAGAAGGATAAGAATCGAGAGACAAGCATGGTTTAATT
AGTTGACTTTTAGTGTTCTGCTAGGCTTATACCCAGTTAGAATGCCAACCAACTATAGCTGGATT
TCATTAAGCTCCATCTATTGCAACCAGGATTTCATTCTGTCCAACCTTACCTGAATTTTCTTTAA
TACAATCCACGATTCCCGAGTGTTTTACCCTTGAACGAGAAATCCCCTGAGAAGGAGGTGTAACG
CCTCTTATTTAGCAAGATATGTTAGGATTTCCCCATCATATCATCCAGGATTCGATACAAAGCAT
CGAGTACGAGCCACACATGCAATAGATCAATCTTATGGGTTGGAAAGGCAGATTCAACGTGCCGG
ATTGAGCTATTATTCAATAAGCATGGTAAATCAAAAAGCATGCTC
Found at i:263645 original size:19 final size:19
Alignment explanation
Indices: 263621--263660 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
263611 TTTCCATACT
263621 TTCAGTTTATCATGCTTGC
1 TTCAGTTTATCATGCTTGC
263640 TTCAGTTTATCATGCTTGC
1 TTCAGTTTATCATGCTTGC
263659 TT
1 TT
263661 TGTGTGTACC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.15, C:0.20, G:0.15, T:0.50
Consensus pattern (19 bp):
TTCAGTTTATCATGCTTGC
Left flanking sequence: Indices 263121 -- 263620
GTCCTTCAGCTTCGCCCGAGCCTCCCTAGCGATCAGAGGAATATCACGGCAGCTCTGGTTTATGA
GCGTCCTACAGCTCTCAATATCCCTTCTGTCTTCGTGCATCCCATTTCTTTTCTTTTTCTTCCCA
TTGTACTCGCTTACTAGACTTCTGTGGTTACAGGGCATAGAAATATTTCACAAAGGCCAGAAACT
CTTTCTATGAAAAGCATTCGATCTGGATAAAATCAAAGCTCTTCAACTTAGTAGTCAGGAGCTTC
CACTGAAGCCCGATTCTACCGCTCCGTGGAACACTTCTGCCCACGAACTTCCTATAAAATACTCA
AGATAATTGGTGGATTTTCAAGGTCAAACTGCTTAATCTTTCACGTTCCGTGTTTAGTAAATATA
GGTCCGGAACTTTGATAGGTCAGACTCGACGATAATCCGTACTCCCTTTAGTCAGAAAGAGCTTT
CTCTTTCTATAGCACTCTCTCTTTCTTCTTTTCAATTTCCATACT
Right flanking sequence: Indices 263661 -- 264160
TGTGTGTACCTTTATGAAATAAGGACGGAAATCTCGATCATTTTCACGCTTCAATTGATCTCTTT
TAACACATCCCTTGTATGGCATCCATGAAATTAGTGGAAGAACGACGTTCCGAATTGCCTATTCT
TTCAATATTTATGTTCAGTAGATGCCGAGGAAGGAGAAGCCAATGAATGCCTATCTATGCTCGGG
CACAGAAGCCTGTTTAGATCTCGCCTATACTATTTTGATGCCAATAAGCCACGACCGAAGGAAGC
CTCCCTGTAGGAAAGACTTACGCCAGAACCCAAATTCCCTCTATCCCCGATCAGTATGAACGAAG
AACTCCCCCACCCAGGCAATTAGAATGTTGTAAAGTCCTGAGCGAAAGAAGGAAAGTCGAAATAA
ATACTCATAAAAGAAAAAGTCGTCTACAAATGAGAAGTGCCAGACGATATTGACCAGGCCAGCAG
TCAACAGTAGTTCGAGCAGCCACCTTTATTGAGAACTTTTTCAGT
Found at i:273942 original size:19 final size:19
Alignment explanation
Indices: 273918--273954 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
273908 TAATTCTTTC
273918 TATATATCAGAAACTCATA
1 TATATATCAGAAACTCATA
*
273937 TATATATCATAAACTCAT
1 TATATATCAGAAACTCAT
273955 CATCTAGATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.46, C:0.16, G:0.03, T:0.35
Consensus pattern (19 bp):
TATATATCAGAAACTCATA
Left flanking sequence: Indices 273418 -- 273917
TGTAAACGCTCGTTGAAAACAATCGGGAGACCCCCTTACGAATATCTGGCCTATACGCGCTTTAT
AGATAAGTGTCAACCTCATATTGTTACCAATTTGGCTTGCTAGCGAGGACTTGAAATTTATGCTT
ATAAAGAAAAAGGATTTACTGCTCAGGTAGAGTCCTCCGGGTTGGTTTGAAGCAAAGCACCTCTT
TTGAGTCTTTATCCAGAGGATTGGAAGCAAATATTAGTTAGTTAAGTCGGTCTTCCTGCTCTTGT
GCGCTCTTCTTAGGTTAGGAATCGATACATCTTTTGAAAATAGACTTAACAACCTTTAATAAGCC
AAACGTACACTCTAGGAATGAAAGGACTGATCGTACGGCACTTCTTGGGAACTAGATCAATTGGT
ACGAAAGCCTGAACAGGACAGACAAGTACGAGAGCCGGAGGGAGTGTAGAAAAAAAACGTTGAGT
GCCGCTGATCGTGATCTGTTTTCAATTCGAACAAATAATTCTTTC
Right flanking sequence: Indices 273955 -- 274454
CATCTAGATATAGTCAATTTTGGTTTTCTTACTTGAATTTGGCTGGGTTCGCTACCTCCTTCATT
GGCAACAATCCTCCTTATTCCGGCCCGAAACTCCTTTCTCGAGAAATGAAAAAGCAGAAACTGGT
AACGCTGTTAAGTCAAATTACTCGGAAGAGAGCTTTGGATCATCAATTCCAGCTGAAGTAGAATA
GACTTTTTTTTGCAAAGAGGACTCGGAAAAGCTTGTGAAGAATAAGTATTCGCTGGACAGGGTTG
CTCTCAATATGTAGAGTATGCGAGCGATCACTAACAACAGGTATTTGTGTAACTAGATAGGGCGG
CTTGCTTCCCTTAATACCATAGATTTCTACGTCCCTCATGCTCTAATGAGACGGAGAGATTATTC
AACATTGCTTCTACTGCTCGATCGGATGGATCGACTCCTTCTTCCAATAAGGGCATTGCTTCCTC
TGAAGAACTTCTCTTTTCTATAACTGTAAAGCTGACTGAATGTTC
Found at i:276190 original size:21 final size:21
Alignment explanation
Indices: 276164--276205 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
276154 AACGTTTGTA
*
276164 AATGATGGATATGGTCTAATG
1 AATGATGGATAGGGTCTAATG
*
276185 AATGATGTATAGGGTCTAATG
1 AATGATGGATAGGGTCTAATG
276206 CCGAAGCAAG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.33, C:0.05, G:0.29, T:0.33
Consensus pattern (21 bp):
AATGATGGATAGGGTCTAATG
Left flanking sequence: Indices 275664 -- 276163
CGGCTCTCCTGGCCCATTGCCTTATAAGGTGCATTTCATGCTTCTTCTCCTTCGTACTCTCTTCT
GTCCGTTTTCACTCTTTTGAGCTCCTGACTCGGCACTACTTTATTAAGGGGAGTTCGACGTACCA
GCAGAAATCATAACAGGCTGACTCTTTATTAGCGAAGAGCAGAGCACCACCCAATCAAAGAAGGC
GCACCGCGTTTATTCGCTCCTTCCTATACGTACTCTTTTTTAGGCAACTTGCGAATAGTATTTTG
TATCATAAATACCAACAAGTGCTTTGTTGGCTGAAGCCTAAGGAATTAGAGACGTCAACTTTCTA
CCTCAATTCTTAACAAGTTCTCAACTTAACACAAGACTTTTTGGGGACTCTTAATATGTATATAA
ATAGATATGTATTTTGATCCCGTGTTTTATATATGTATTTTGATCGGTTGTCGAGTGCTTCCTGT
TTTGAATACGTTTAGTCAACCACTCATCTTTCTTCAACGTTTGTA
Right flanking sequence: Indices 276206 -- 276705
CCGAAGCAAGCGACAGGAAGAGAATGGTATTGTAGAACATTTCTGTCATACCCTCCCTCCGAACG
TTGAGTAGTAGGAGCCCTGAAACCGGATTGACCATAGACTGAAATTTCTCAACCATTTTCAAGAG
AGCCCAAAACCTTACTTACTTCATTCCCGCCCATCTCATGCTTTTATATCAAACAATACCAATAG
ATAAGAAGGATAGTCCATAGACAGATAAAAAGGATGTTTAATAGACCCTTGCCTTGGTTTAGCTT
TATTCCCCGTGCTCTCAGCTGTCAACGCAGTGGGTGACCTGAGGCCTCGGAGAAAGAGATAGCGA
AGTAGGTATTGCTCGCCGGCTTTGAGTGTCCTTCCCGTCGTTAGTACTTTGGAATAGGAAAAGGG
CAAAAACACCTTCAACCAGGGACAGTAGTGGAACCCATATTCGATTCAACGAGTGGCAGTAGTGT
AATAACTATGAAAGCTACCTACTCTTGACTATGAGAGCTACCTAC
Found at i:276699 original size:23 final size:23
Alignment explanation
Indices: 276665--276709 Score: 81
Period size: 23 Copynumber: 2.0 Consensus size: 23
276655 TAGTGTAATA
276665 ACTATGAAAGCTACCTACTCTTG
1 ACTATGAAAGCTACCTACTCTTG
*
276688 ACTATGAGAGCTACCTACTCTT
1 ACTATGAAAGCTACCTACTCTT
276710 TCAGTGACAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.29, C:0.27, G:0.13, T:0.31
Consensus pattern (23 bp):
ACTATGAAAGCTACCTACTCTTG
Left flanking sequence: Indices 276165 -- 276664
ATGATGGATATGGTCTAATGAATGATGTATAGGGTCTAATGCCGAAGCAAGCGACAGGAAGAGAA
TGGTATTGTAGAACATTTCTGTCATACCCTCCCTCCGAACGTTGAGTAGTAGGAGCCCTGAAACC
GGATTGACCATAGACTGAAATTTCTCAACCATTTTCAAGAGAGCCCAAAACCTTACTTACTTCAT
TCCCGCCCATCTCATGCTTTTATATCAAACAATACCAATAGATAAGAAGGATAGTCCATAGACAG
ATAAAAAGGATGTTTAATAGACCCTTGCCTTGGTTTAGCTTTATTCCCCGTGCTCTCAGCTGTCA
ACGCAGTGGGTGACCTGAGGCCTCGGAGAAAGAGATAGCGAAGTAGGTATTGCTCGCCGGCTTTG
AGTGTCCTTCCCGTCGTTAGTACTTTGGAATAGGAAAAGGGCAAAAACACCTTCAACCAGGGACA
GTAGTGGAACCCATATTCGATTCAACGAGTGGCAGTAGTGTAATA
Right flanking sequence: Indices 276710 -- 277209
TCAGTGACAAGCAAGCCTCCCTCTTTCGAGAAGCAACTCTCTCTAATACCTACCTTGTAGTGCTG
TCCGAGCGATGAATTCCTATTTCTAAGCTTGTTGGCTTTCCTGACGTGTGTACATCAACTCATAT
AGCAAGTAGAAAATCATGTATGTATTCGAGTCTAAATTCATGTATGTGAAAAACTTAGGGATTAC
TGCAAAGACGTTATAGTAACCCTGGCTTGACAAAGACGTTAGAGTAACCCTGCGAGTCAATTCTA
ACAATTACAAGAATACAGTTCGTTAACGTAACAGAAGGCATAAGCAAAGTATTTCAACACAAGAA
ACATATGGCAAGGACTGGAGCGGTGCAACCTGCTTTCTTTTATTTCAAAGTACTGTTGGGGTTTT
TTGACAGAATACTTTTTGCTAGGCCCAGCGACACACTAATCGTTTATTCCACCTTTATTCGAGAA
GCGGAGGTTCAGATTTCTTAACTAAGCTACTCCTCTTTCTATTGA
Found at i:277424 original size:21 final size:21
Alignment explanation
Indices: 277398--277448 Score: 77
Period size: 21 Copynumber: 2.4 Consensus size: 21
277388 AAGGAAGCAG
277398 CATAACCGGACTCCGTTCAAC
1 CATAACCGGACTCCGTTCAAC
*
277419 CATAACCGGACTCCGTTTAAC
1 CATAACCGGACTCCGTTCAAC
277440 C-TGAACCGG
1 CAT-AACCGG
277449 CATCACCTTA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
20 1 0.04
21 27 0.96
ACGTcount: A:0.27, C:0.35, G:0.18, T:0.20
Consensus pattern (21 bp):
CATAACCGGACTCCGTTCAAC
Left flanking sequence: Indices 276898 -- 277397
GGATTACTGCAAAGACGTTATAGTAACCCTGGCTTGACAAAGACGTTAGAGTAACCCTGCGAGTC
AATTCTAACAATTACAAGAATACAGTTCGTTAACGTAACAGAAGGCATAAGCAAAGTATTTCAAC
ACAAGAAACATATGGCAAGGACTGGAGCGGTGCAACCTGCTTTCTTTTATTTCAAAGTACTGTTG
GGGTTTTTTGACAGAATACTTTTTGCTAGGCCCAGCGACACACTAATCGTTTATTCCACCTTTAT
TCGAGAAGCGGAGGTTCAGATTTCTTAACTAAGCTACTCCTCTTTCTATTGACGGATGTAATATG
ACTGAATAGCACCTATCTATGACGTTAAGTAATATGATAGCACCTATTTATATACATACTTGAGC
TAAGTGGGTTAGTGAAGCTTATAGCATTACTCAATGGTACAAGCTGGAGACTCCTACCTAGAGAG
AGTTAGCTCAGGAACCGACATAACCTGATAGAGTTAAGGAAGCAG
Right flanking sequence: Indices 277449 -- 277948
CATCACCTTACTCCGTTCAATTAAGGGCCTGCTGCTCTGAAATTGACCTTCCCTTACTGTACTGG
TCAAAATAAGTACTTCTAAGTAATTCCTTACCGAGATACATACCCGTAACGACTGGCATGGCAAT
GATCAATGATGGCTTCTCAATCCAATACCGTAATGCTCGCTATATGGATCGAACAATCTCGGCTA
ATAGAGAAGAGAGTCAAAGATTGAGTGACAGAACATAGTGTAAGCAACCACATAGTATGTACCGT
GTAGTGCTACATCTAGTGAAGCATTAGCAAGCAAGGGAAATCTAGTGAAGCATTAGCAAGGAAAG
GAGGACTCAGGAACGAGAAGTAGCTCGACTCAAAAGGCTTTTCGTTCTACACGGACGAGTAACTA
CGGCATGAGAGATACACGTAGGCATGTTACGCTACGCTCAATCCGGTGCTTGCACATGGATTGCT
TGCTTAGGCAGTTAGTATTCTAACTTTCCACTATGATATTATACG
Found at i:286148 original size:16 final size:16
Alignment explanation
Indices: 286127--286158 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
286117 AATCCATTTT
286127 CATCTATATGTCTTGG
1 CATCTATATGTCTTGG
286143 CATCTATATGTCTTGG
1 CATCTATATGTCTTGG
286159 TGAAACTCGG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.19, C:0.19, G:0.19, T:0.44
Consensus pattern (16 bp):
CATCTATATGTCTTGG
Left flanking sequence: Indices 285627 -- 286126
CATATGGGTATAAAATAGAAAGACTTTCTGTGATGCAAACTCTAAGAAATTGAAATTCTTGGTGG
GAAAACGTTCTTTTATGAGCAAAGTGAAAAGGAAAAAGCATTATGCTTGTTAGAAAAGTTGTGCT
TGATGCTGAATGTCTGAAAAGTGAATTGCCAAATTTCAAGCAATTTGAAAAGAAGGATTCAACGT
GTTGTTAATGCAGTGATTAAAGAAATGTTTCTTTCCATAAACAACCTTTGAAGTTGATCTTCTCC
TGTCCCTTTCCATATGTTTTTCTGAAATAGTATGGCTTGATTTGTTGAAAAGGCTTGATAGACTC
AGTGCAAAGGGCAGCAAGCTGAAGCTTGCCTGTAGAGTTCTTCGCTCGGTATGCTTTCTTATCTT
TTGCGAGTCTTTTTATATGCAAAAAGGGCATTCCATTGATACGCCCGGGTTCGTTCAGAAGAGGT
GGACAGACAAGCACTTGACTCATTGCCGTGAAATGAATCCATTTT
Right flanking sequence: Indices 286159 -- 286658
TGAAACTCGGGGAATGTTTTTCATTCATGTTGTTAGTCTCAACTGGATGGAGTATACCCGCTTCG
TAGTGTTCACGTGATCGAAATGCATTGGATGTATGCCCGGCCATTTCCAAGATTTCATAGATATA
CTTTTTCTGTCATGCCTAGACACTACTGACAGTAAGATAATCAAAGCAAAGAGCTTTCTTTCTCT
AGTGCTAATGTGGAAATGGAAATCCTTCCTCAACGCTCCGCGCCTTGCTTATGGAGACTGCAGTT
ACTACGAGTACTCTAGCATCGGGTATTCTAAAGGAAAGGCGGCAAAGCACGTACTAAGCCTCACC
ACCAACCAAGGGCGCGTATAAGCTGTTAATACTGAATCTAGGATGTCTAAGACAGATAGAGTGAC
AGGGGGTTGAGAGGCAGGGCTTAGAGATGGATGCAGAAAGCTCCCCTTGTCCGGCCAGGAAGAAT
AATAGCCTAGAGGTTGACCCGATGGACTGACGTTTTGGTTGGTGA
Found at i:295139 original size:24 final size:24
Alignment explanation
Indices: 295112--295184 Score: 121
Period size: 24 Copynumber: 3.0 Consensus size: 24
295102 ACTCGCTACC
*
295112 CAGTGAGTAACTA-CTCTTTGAACT
1 CAGTGAGGAACTACCT-TTTGAACT
295136 CAGTGAGGAACTACCTTTTGAACT
1 CAGTGAGGAACTACCTTTTGAACT
295160 CAGTGAGGAACTACCTTTTGAACT
1 CAGTGAGGAACTACCTTTTGAACT
295184 C
1 C
295185 GTAACATTAG
Statistics
Matches: 47, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
24 45 0.96
25 2 0.04
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.30
Consensus pattern (24 bp):
CAGTGAGGAACTACCTTTTGAACT
Left flanking sequence: Indices 294612 -- 295111
AAAGACCAAACATATCCCAGACTTCTCGCTCCCACCAGCCGGCTGATGGAAATAGACTGACTACC
GAAGATATTCGTGTTACTTCGTCTGCACTTGTTTGTACACGAATGCGTGAGTTATACCGAGTACT
CAGTAAATTATAGACAACTTCAAATCTGCGTTTTCTAGAGGGATAATCTACTCCGCAAATATCGA
TCAAAACTTGAACCCTTGTATGGGTATGCCATTTGAGAAAGCACAACAACGGGAATAGGTAGTCA
GTATTGGTATAAAATCTATTTCCATGTTCCGATCTTTTCATTTTATGTACCCATTTCTTGGGTAA
AATATCCCAACTATATTGGAAAATGAATTGGTTATCCATCAATCTCAATAAATCAAGTTGTCTTT
TTTCCGCTTCTTGCTCTATGAATGAAGAAAGACTTGTCGGAAATCGCCGCGTCGGGTTGGTCCAA
CTAAGAAAGGCATGGGAGTGTAGAGGCCGAAAAAGACTCGCTACC
Right flanking sequence: Indices 295185 -- 295684
GTAACATTAGTAGTTACTCGTCTGTTACGCTTTTGAGAGATACACGAACGTAGTGTATCTCTCCA
AAAGGAACATGCCGTAGTTACTCGTCTGTTACGCTTTTGAGAGATACACGAACGTAGTGTATCTC
TCCAAAAGAAGTAGTGTATCGTCTGTTACGAACGAAAAGCCTCTACGACAGAGAGAGAATAATCA
GATCAAAATCTTGACTAAAAAGAAATACCAAGTTCCTTTCAATTTTGGCAAATAGTTCAAAGTTG
CTCTAACGATTCTACATCTTGATGGAGATGCTTTCCGACTGCTGGTTTTGTTAAGCCCCGGGGAA
TACAAAATCCCGTCCGCTTGCCTTGATTTTTTCATGTTTCTTCTCGGTCCCAGCCTTTCCGTCAA
GTCGTTCTCGTCTAAACCCTCAGGCGCATTCTTCCTGCCAGGCAAGCAACAATTGTGAAAATTCT
CATTGTCTTGTCGGAAAGAAAAAAACTTCCTAAACCGGAATTCCA
Found at i:295274 original size:69 final size:69
Alignment explanation
Indices: 295194--295322 Score: 258
Period size: 69 Copynumber: 1.9 Consensus size: 69
295184 CGTAACATTA
295194 GTAGTTACTCGTCTGTTACGCTTTTGAGAGATACACGAACGTAGTGTATCTCTCCAAAAGGAACA
1 GTAGTTACTCGTCTGTTACGCTTTTGAGAGATACACGAACGTAGTGTATCTCTCCAAAAGGAACA
295259 TGCC
66 TGCC
295263 GTAGTTACTCGTCTGTTACGCTTTTGAGAGATACACGAACGTAGTGTATCTCTCCAAAAG
1 GTAGTTACTCGTCTGTTACGCTTTTGAGAGATACACGAACGTAGTGTATCTCTCCAAAAG
295323 AAGTAGTGTA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
69 60 1.00
ACGTcount: A:0.27, C:0.21, G:0.22, T:0.30
Consensus pattern (69 bp):
GTAGTTACTCGTCTGTTACGCTTTTGAGAGATACACGAACGTAGTGTATCTCTCCAAAAGGAACA
TGCC
Left flanking sequence: Indices 294694 -- 295193
TTCGTCTGCACTTGTTTGTACACGAATGCGTGAGTTATACCGAGTACTCAGTAAATTATAGACAA
CTTCAAATCTGCGTTTTCTAGAGGGATAATCTACTCCGCAAATATCGATCAAAACTTGAACCCTT
GTATGGGTATGCCATTTGAGAAAGCACAACAACGGGAATAGGTAGTCAGTATTGGTATAAAATCT
ATTTCCATGTTCCGATCTTTTCATTTTATGTACCCATTTCTTGGGTAAAATATCCCAACTATATT
GGAAAATGAATTGGTTATCCATCAATCTCAATAAATCAAGTTGTCTTTTTTCCGCTTCTTGCTCT
ATGAATGAAGAAAGACTTGTCGGAAATCGCCGCGTCGGGTTGGTCCAACTAAGAAAGGCATGGGA
GTGTAGAGGCCGAAAAAGACTCGCTACCCAGTGAGTAACTACTCTTTGAACTCAGTGAGGAACTA
CCTTTTGAACTCAGTGAGGAACTACCTTTTGAACTCGTAACATTA
Right flanking sequence: Indices 295323 -- 295822
AAGTAGTGTATCGTCTGTTACGAACGAAAAGCCTCTACGACAGAGAGAGAATAATCAGATCAAAA
TCTTGACTAAAAAGAAATACCAAGTTCCTTTCAATTTTGGCAAATAGTTCAAAGTTGCTCTAACG
ATTCTACATCTTGATGGAGATGCTTTCCGACTGCTGGTTTTGTTAAGCCCCGGGGAATACAAAAT
CCCGTCCGCTTGCCTTGATTTTTTCATGTTTCTTCTCGGTCCCAGCCTTTCCGTCAAGTCGTTCT
CGTCTAAACCCTCAGGCGCATTCTTCCTGCCAGGCAAGCAACAATTGTGAAAATTCTCATTGTCT
TGTCGGAAAGAAAAAAACTTCCTAAACCGGAATTCCAATTATTTTTCTAGAGTCAAAACGCAAAT
CCAACAAATGCGGTTCAACTTTTGTTAAGCATATAGCGTTTGGATCAAATTCAGTAAGCTCCGAC
GGACGGCTCGCCGCTTCATTCTTTGCGTCTCATGCACGGGTGGAG
Found at i:316139 original size:24 final size:24
Alignment explanation
Indices: 316107--316179 Score: 121
Period size: 24 Copynumber: 3.0 Consensus size: 24
316097 CTAATGTTAC
316107 GAGTTCAAAAGGTAGTTCCTCACT
1 GAGTTCAAAAGGTAGTTCCTCACT
316131 GAGTTCAAAAGGTAGTTCCTCACT
1 GAGTTCAAAAGGTAGTTCCTCACT
*
316155 GAGTTC-AAAGAGTAGTTACTCACT
1 GAGTTCAAAAG-GTAGTTCCTCACT
316179 G
1 G
316180 GGTACAGGAT
Statistics
Matches: 47, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
23 4 0.09
24 43 0.91
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29
Consensus pattern (24 bp):
GAGTTCAAAAGGTAGTTCCTCACT
Left flanking sequence: Indices 315607 -- 316106
ACCCAAGGAAGGGGCCGACCAATAACGAGAGGCGGTTAGAGCCTTTACTTTAGAACAGTAAGATT
GAGCCTCAGTAAATAAGAAATGTCCGGGCATGTGCGTAAATACGATTTCAAGGAGTGATGTACAA
AAGATTGCTTGCTGGCGACCTTCGGCATAACAAATAATTATCCACTGCAAAATAGACTAGTTACG
ATATAATGTGAACGTGGGCAAAAGCCAGGTCTCTAGGCATAGGCCACAGATACTTGTCTGAGTAA
CTAAAGGCAGTAAAAAGAGTCAAGGGATAGGCTTAGGTCAAATAAATAGGAATAGGCCTCTGGGC
GAGACTCCAATAGAACCGATTCAAGTGACAGATAAGCATTTTTCGATACTGTTTTTGCGCAAGAG
GGGCTTTTCGTTCGTAACAGACGATACACTACGGCATGTTCCTTTTGGAGAGATACACTACGTTC
GTGTATCTCTCAAAAGCGTAACAGACGAGTAACTACTAATGTTAC
Right flanking sequence: Indices 316180 -- 316679
GGTACAGGATAAGCATATTATGATAAGAGGCTAGGGAATAGTCTCCTAGGTCGATTTCAAATAAA
CTCACGCAGCTCCATATATGAAATATGCGCTGAAGGAAGATACAAGTAACTCTTAAGTAGAAATG
GTTCTCAGGTAAGTAAGCAATATTTGATTTTGATTAATTCCAGTCACACTTCGGAGTTATATAAT
AAACCAAGGAACGCAGCTGTTACAATAGCAGCTGACATAACTGTTCATGGGAGTAGACTTATTCC
TTTGTTATGGTTTTGCAACCACTAGAGAAAAGACGGTTGAAGCGAGAGTGCACAAAGAAAGTCCC
GGGTCTCTTCAACGCAGCGCTAAGCTATGGTTTAATGCTGCAGGAGGATAAGCCAGATATTGAGG
ATAAGCCAGATATCGAGTATAAGCCAGATATCATAGTAGACAAGGGTTCGGCAAAACACCATGTT
ACTAGAGAGTGCTATATGGAGCAATACTTAATTAGTCAAAAAAGT
Found at i:316571 original size:18 final size:18
Alignment explanation
Indices: 316548--316601 Score: 90
Period size: 18 Copynumber: 3.0 Consensus size: 18
316538 AATGCTGCAG
*
316548 GAGGATAAGCCAGATATT
1 GAGGATAAGCCAGATATC
316566 GAGGATAAGCCAGATATC
1 GAGGATAAGCCAGATATC
*
316584 GAGTATAAGCCAGATATC
1 GAGGATAAGCCAGATATC
316602 ATAGTAGACA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 34 1.00
ACGTcount: A:0.39, C:0.15, G:0.26, T:0.20
Consensus pattern (18 bp):
GAGGATAAGCCAGATATC
Left flanking sequence: Indices 316048 -- 316547
GATACACTACGTTCGTGTATCTCTCAAAAGCGTAACAGACGAGTAACTACTAATGTTACGAGTTC
AAAAGGTAGTTCCTCACTGAGTTCAAAAGGTAGTTCCTCACTGAGTTCAAAGAGTAGTTACTCAC
TGGGTACAGGATAAGCATATTATGATAAGAGGCTAGGGAATAGTCTCCTAGGTCGATTTCAAATA
AACTCACGCAGCTCCATATATGAAATATGCGCTGAAGGAAGATACAAGTAACTCTTAAGTAGAAA
TGGTTCTCAGGTAAGTAAGCAATATTTGATTTTGATTAATTCCAGTCACACTTCGGAGTTATATA
ATAAACCAAGGAACGCAGCTGTTACAATAGCAGCTGACATAACTGTTCATGGGAGTAGACTTATT
CCTTTGTTATGGTTTTGCAACCACTAGAGAAAAGACGGTTGAAGCGAGAGTGCACAAAGAAAGTC
CCGGGTCTCTTCAACGCAGCGCTAAGCTATGGTTTAATGCTGCAG
Right flanking sequence: Indices 316602 -- 317101
ATAGTAGACAAGGGTTCGGCAAAACACCATGTTACTAGAGAGTGCTATATGGAGCAATACTTAAT
TAGTCAAAAAAGTCAAAGTGCCCTATCCTGTCTGTGTGTAAAAGAAATACATGAACATCAAGCAA
AATACTATTAACTAACTGTGTTTGAGCGCTACCTTATTCTAGCAATAGAGAGAAAGCGCTTACTA
ATCAAAATAGTACGAAATGTCGGGAAACCGAACATGGCGAGTAATACTGAGGTGAGGAATAATTC
CTCCTGTCTCATACAATTTGTAGTCAATGAGACATGATCGCGAGGCTGAGACTACACGCGCTTTC
TTTCGTTCCGCCATTTTGTTAAGGAGTGTGCAGGGGGGTGATGGCAGGGTAAGTGCGGGGGCTTG
AACTCAGAGCCGGAAGAGTATTTCTTGAGCAAGACAGAAGGGTTTCTACCCTCAATTGAAACTCA
GTGAATGCCTGTGATTTGGATGGCAATCTATCCATGAAAAACAAG
Found at i:322590 original size:11 final size:11
Alignment explanation
Indices: 322574--322604 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
322564 ATTCCGTTTG
322574 CGTATCCATAC
1 CGTATCCATAC
322585 CGTATCCATAC
1 CGTATCCATAC
*
322596 CGGATCCAT
1 CGTATCCAT
322605 TACGGATCCT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.26, C:0.35, G:0.13, T:0.26
Consensus pattern (11 bp):
CGTATCCATAC
Left flanking sequence: Indices 322074 -- 322573
TCTTACCCAAAGGAGGGACAAGCAGATAGAATTTCCGAAAGGCAGGAACTGAGTCAAGTTGTGAT
TTCATCTACATTTTGCGTAGAATAACAGTTAGAATTTAGGAATAAGAAGAGAATTCATAGGGATG
AGAAAGATAAGTAAACACCTCTTCCTGAAAGTTCATAGAGATTACCTAAGCAAGCAGCGGATAGA
TATTCCGTGGGAATGGCACACCCTCCCTTCTGTTGCAAATGCTTCATTGCATTTGACAAAAGCAT
CTTGAGTTATTACTAAAAAACTTGTTGTGAAAACAAAAAAGGATGTGTGGGGGGATGGATTTCAC
CATCTCCGTTCCTTTTATCTATTCATTATTCCTTTGGATGCTGGCATATCCTTTCCTCCAATAGT
GAGGCGAGAAATGAGTGCTCATCTCTTTTTATAGATTGGCCGCTTTAAGACTCCCCTATACTCTC
ATAATGATTATGGGAATCTACATAAGAGCGTATCCATTCCGTTTG
Right flanking sequence: Indices 322605 -- 323104
TACGGATCCTCCGTAAGCCTTCCAACCTTAGTGATGGTAATGTTTTCCCATTTAGCTTTCTCAAT
TTCCACTACCTTATGAAATTCCCATTTCATTCTATAGACTCTTTTGTTCTTATCATCTCTTTTAG
GTTTTTCTCACTATTTAGGAAAAGTATCTCTTTTCTGGGGGAATCGGGGGGGTATACCTTGTTAC
TAGGCAACAGCTTGACTTGGATAAAGAATTTCTTTCTAAGCAATAACTTAACTCAGGGTGTAAAG
CGAAGCGACCTCCATTATTTTCCAGTAGCTGAATGAATTCTTCGTATCGGTATGAGTAATTGCTC
AACTTACATGCTTTTCCATTAATGGAATGATGTTACGATACGCCTCGATAAGTGCAATGCGGTGT
TCCCCCTCATACCTTTTTATGGGACTTATTTAGTGTCGCTGGTTGCAGTTCATCCAAAGCCTGAG
CTAATTCCGCTAGAAGCGAAGAGCCACAATCTCTACAAGAACCGT
Found at i:369508 original size:20 final size:20
Alignment explanation
Indices: 369483--369522 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
369473 AAGTTGACCA
*
369483 AGCGAGTGATTGAACGAGCC
1 AGCGAGTGATAGAACGAGCC
*
369503 AGCGAGTGATAGAGCGAGCC
1 AGCGAGTGATAGAACGAGCC
369523 GTCCTTCAGA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.30, C:0.20, G:0.38, T:0.12
Consensus pattern (20 bp):
AGCGAGTGATAGAACGAGCC
Left flanking sequence: Indices 368983 -- 369482
GAAAACTTCATGCTAATCCCATACGTCATCACCATTACCATCTTTTTCTTTTCCTACTTCGGTCA
GGAATCTATTGACTTTTCATTCATATACTCTAATGGAAATGGAATATTTTCTATAGCGAGATTCT
GAATGATACTACTTAATCTTCTATAGACTAAGTTGACTGTTTGGAAGATCGAATACCTTCCCGGA
TAATAGTGTTCAGCAAAGTTTCTTCTTGCCATTTTATTACTTCGTGCCACGATAGGGGCGAAATT
GAGACCACCTAGAACGGGCGGGCTCTTCCTTCACAACCAAGTCTATGACGCAGCACGGACATACC
TTGCGTCCCGCATCAACACTTACATGCGGCGGGGTTAGCCGTGTCAAGTCGAAGAACATGATGAT
TAGCATGGAAGTCGATGAAGAGATGGTTTACTTGTTTGATGGCACAGAGTTCAAGTGGAAACTTG
TTTTCCGCGAGACCTCGGGCTTCCCAAGAACAAAGAAGTTGACCA
Right flanking sequence: Indices 369523 -- 370022
GTCCTTCAGAACGGGTGAAATAAAGGGAGGGAGCATAACTTTTGATCGAATAGGCGCCTGGCGCA
TTTTCCTTAATAGAGCAGATCTGACAATCATCACCTACGAAGGTTGTATCCGGGATGGAGATAAG
ACCGAATCGTAAGCCACAACCTACTTGTGGGGAGGGCATTTTCCAACCACTAGACAAATAGAAGC
GGGACGAGGGGAGCCACACAGATACCGAGTTCTTTCAAAATATACCCAGAAAAAGCCTGACTTTC
TCCCTCCATATGTACAGACTCTGAGAGGGTTTCACTTGGATAGTTTTCAGAAACTAGAAAGGGGG
GGTAGGTATAGGTGATATTTCAACACTTTTTTGGGTAGCATGTCATACTCCGAATTGTTGTAGCG
ATTAAATGAGATTTCCAGGTTGTATAAAAGCATGCATGAAACCTAAAGAGGGAAAAAAATCCAAA
CAAACCTTCATCGATGCAGCGAAAAACAAAACAATCGCACGAGAG
Found at i:372766 original size:22 final size:24
Alignment explanation
Indices: 372721--372767 Score: 62
Period size: 26 Copynumber: 2.0 Consensus size: 24
372711 GAAGGTGAGT
372721 CCGATCAATCATGGGTTGATGAAATA
1 CCGATCAATCA-GGGTTGA-GAAATA
372747 CCGATCAATC-GGGTTG-GAAAT
1 CCGATCAATCAGGGTTGAGAAAT
372768 CGTCATCAGG
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
22 5 0.24
24 6 0.29
26 10 0.48
ACGTcount: A:0.32, C:0.17, G:0.26, T:0.26
Consensus pattern (24 bp):
CCGATCAATCAGGGTTGAGAAATA
Left flanking sequence: Indices 372221 -- 372720
ATTTGTAATTGCTGTTCGTGTTGAACGAGGGCAAAGGTCATCGAAGAATGGAAGAAGGTATCGAT
TCCATTCTGGGGACGAAGCCCCCTTTTTAGGAGAGTAGCAGCTAATTGGACTCTAGAAGTGAATG
GAGTCGAAAATCCTGCAGGGTTTAGTGCATTGAACGAATTGCATGGACTTGTTTGCTATGGAATG
GAGGGAAGAGAAGAAAGACACCAACTAGACCTAGGGCGGGATGGATTATGCTTGAAGGATCACAT
TCCTATGCCTCTTACCGGAAGCCATGTAGTTCCACTTATTAGACATCCATTATCGTCCATTCTCG
ACTTCCAATACACTGTCCTAGCTCTAGTCCTAGCTGCTCTAGCAAGGGCTATTCCGTACCATTTC
GCTTGGTTGTAGCGCCTGTGGTACTGAAGCATGAAGCCAACTACTATGACCAATTCCGTGCTCTA
TTTTGTACTATGACCGCTCTATTTGGTGTTGAGAGGAAGGTGAGT
Right flanking sequence: Indices 372768 -- 373267
CGTCATCAGGACGGATTCGAGTGAGATGCGAAGGAGTGTTGTACACCGGAGACCTGGCTAGGAAT
GGTTGGTGAGTCAAGTGAGGAGGCCCCCCTTGGAATTTCCCTTCGGGATAAGAGATCAATCAAAT
CGAGATTAGGTTGGTTTTCTCAGTGTCTTTCTCCCGGGGGTCTCTTTTCTTTGTAGCTCCGTCCG
TTCTGCTAGCTGGCTTAGCCTTGCTTGGCTTGTGTAACGTTTTGGAGAAGTGTGAAGTTATCTGC
TCTTGGGCATTTCATGCTTGTACGGTTCTTATGTTGTTTACGGCTTCTCTTGCTATTGAAGTTGT
CTGAGCATAATTGGATGTGTAATTCCCTCCAAATCCCTTGAGAAATAAGTGCTGCATAGAGAACA
AGAATATAGCTTTCTATTAAGATCCTGGGTGAATGCTCTTTCAAATCAATTCATCATTAGCAAAT
TCCATATGCACTGTTGCCAAATCAAAACATCATTTATGCCCCATT
Found at i:379920 original size:30 final size:30
Alignment explanation
Indices: 379886--379944 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 30
379876 TCTCACTTTC
379886 TATATTAGAGTCTTCGTGTCGTTTTTTGTA
1 TATATTAGAGTCTTCGTGTCGTTTTTTGTA
** *
379916 TATATTCTATTCTTCGTGTCGTTTTTTGT
1 TATATTAGAGTCTTCGTGTCGTTTTTTGT
379945 CACTTTAGTA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.14, C:0.12, G:0.17, T:0.58
Consensus pattern (30 bp):
TATATTAGAGTCTTCGTGTCGTTTTTTGTA
Left flanking sequence: Indices 379386 -- 379885
ATAGTGAGCCACTGGAAGACCGGGGGAGGTTAAGCCACTCGACAATAGGAGAGGGAAATGGAAAA
GGCGGATATTTGAGTCTTTCTTTTCCCTGAAGATCGGGATCATAGGTTGAGAGTTCAGGGAAATC
GATTCAATCTCCGCATCTTGACTGCCAAAAGAGAATGAGATTTCTCTTTACCGGGTTGGTACTCC
ACTTCTTCTATAGAAGATATCTGGCGAGAGGTAGATCACTTCACCATTCGGCCCATCACATCAAT
CAATCAAGTCTTTGAGGTGGACAAGCCGCCGCCTTGAGCTTACTTAAGAGTCATATCCTGCCCCC
ATATCTCTGTACTTACGGATGACGCAGGCCTCTCTCGCTTTGAATTTCTTCCCATTGTTCAGGCT
TACATACCATAGGAAGATTAAGGTGCATTGGAAGTAATGCAAGATCAAAGGTGCAAACAGCGTAA
AGACACCTTTCTCTAGAAAACTGACCTCTCGAATTTCTCACTTTC
Right flanking sequence: Indices 379945 -- 380444
CACTTTAGTAAGAGGAGGGTATTCTCTAATTTCACACCAGCCATCAGAAATGGAATCCTACTTTC
CACTCCCGATTCTTTGTCTCCTAACCAAGTACGAATGCTTTCAGTAGTTATCCTCGGGGGAGGTG
GGGGGATAAGAGAAGCAGCAAGGCGCAAGAGCAACTACTTCCCCCTCTACGAGGTCAAATTCGCA
TATGGTGGATAGCTTGAATGAAAGATGGATGCTAGGTAGGACCTTATTCCATCCCATCGGTTGAT
CAAGGTTGGAATAAACCAATACTAACTAACGTTCCGATACAGGCTTTAGCCAAACCCCCGGGTAT
TTACTTTAATGACATTTATTCACCTTTCAGCATACCCCCATCAGATTATTGCTTGGTCTTGTTGC
CTTGATGATTTTGAACTGGAGCAACTTGATGTGAAGACTTCTTTCCCCCCGGGGCGATCCTTATG
AATGAATTTCTATGGGGCAACCAGAGGGGTACTACATTGACGGGA
Found at i:439152 original size:16 final size:16
Alignment explanation
Indices: 439131--439161 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
439121 AGTGAACAAG
*
439131 CCTAGCTTCCAAAGAC
1 CCTAGCTACCAAAGAC
439147 CCTAGCTACCAAAGA
1 CCTAGCTACCAAAGA
439162 AAGACCCTAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.35, G:0.13, T:0.16
Consensus pattern (16 bp):
CCTAGCTACCAAAGAC
Left flanking sequence: Indices 438631 -- 439130
TAAATAAGTCAAAACCTCACCAGAATAGTTTGCAAATCTGTCTCTTGGTCGACCTAAGCCCCCGG
TCTATGAATTAATAGGAGCAGTCTCATCTCGAGAATTACCAGAAAAGTTAGTAAAAGGATGTTGA
CCAGCCCCAGGCCTGGCTGATGGTGAGAATTGGAGGTGTGTCCGGATTGATTGGTCTTTTTCTTC
GGTGGAATCAGACTTATAAGTTCAAGAAGCGAGATCCGTAGAAAAAGTGTAAGCAACGAAGGCAG
CATCAGTGTCCGAAGCAGACTCGCTCGAAGAGGATGGACGGGGGAATCCTACGAAACAAAGGACC
TTTGCCAGGAAGCAAAGAATGAGGCGACTCAATCAAAGAAGTCAAGAGAAAAGCGGAGGAATCCA
GTAGTTCTTTGACCGAGGAAGTTTGTTCCGCTCAGCAGGACTCTTTCTTCTTCGAGCCTATGCTT
GTTGGCTTAATCGACGGGGAGGCTAAGTAAGGCCCAGTGAACAAG
Right flanking sequence: Indices 439162 -- 439661
AAGACCCTAGCTACAAAATCCTAGCAACAGGAACATGCGAACAACCGCTATGGATCCAACGCTGC
GAGAACAACAAAAAAAGCAAGGAAACACAGAGATGGTTTCGAAGCGGTCAAGCATTCCATATTCT
CATATTAGGCGATTGGTGCGTGCGGGGGTCCATTGGCTTGAACAAGGAAATGGAAGCACTCAATG
GGGCCAGATAAGCAGCATTGGAGATCGAAATTGCTTCATTCCCAAACTGATTGATTCTCGGCTCG
CGACAAAACACTTGATCTATTACACCCCATCATGAGTGGTGCCACTCCAAAAAATGTTCTTGATA
GGTAGGTACGACTTGAGACAGCATTTCAATACTACCCTGCCCCAACACGGCTCAGCTCCCATACA
TAATAGGAGGTAGGTGGGTCTCTTTATGCAATTACAGTAACACATACTTGATGCGAAGTCACTCA
AACACTTCTTGATTTCAGGGGTCTTTGAACTCGGTTGGCTTGAAG
Found at i:472055 original size:21 final size:21
Alignment explanation
Indices: 472029--472070 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
472019 GAACTAAGAC
472029 TTTGTGATAGGAAAGGATACG
1 TTTGTGATAGGAAAGGATACG
*
472050 TTTGTGATAGGAAAGGTTACG
1 TTTGTGATAGGAAAGGATACG
472071 GTTAACTTAG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.31, C:0.05, G:0.33, T:0.31
Consensus pattern (21 bp):
TTTGTGATAGGAAAGGATACG
Left flanking sequence: Indices 471529 -- 472028
GCCTAAGCATAGGGCAAAGACTGAACTCATTTCTCTGTCCTCAAAAGCAAAAAGCAGAGGTCGCA
GGTAGGTTACGTAGTCCGTAACCATTAAAGGCTAAAGAACCATCGCATCCTCAACTTTGATTCAT
CACGACCTTTCAAACAAGGATTTCTATGAAAGTGAGTGCTTACAAAGTAGTTCGGTATTAAGACA
AAGCATAACCTCGGTAAGAGTCTCGCACAGATACAGGTTGATGACTTCAGTGTGAGGGTGAACGC
ACAAAGTCCCCAGGTACCACAACCCCAGTGCGGCAGCTCTGTATGCTTTTTGTTGGATTATCTGC
TTTCTTAACATTATCTTGATGCTAGAAGATAAAGTAAAGAACTTATGCCTAGCACTACCTTTTCA
TCTATCAATATAGAATATTGGAATAAGTAGTAGGCCCATAACGTAATTTGATAGTTTGGCAAGGT
AGGACAACACTTCTGAGGGCTGGGTAGGCTGGTAGGAACTAAGAC
Right flanking sequence: Indices 472071 -- 472570
GTTAACTTAGACTTTATCATGGATCATGGCGTAGATGAGGTTTGGCCAATAGGAGAAGGAAAAGA
AGAACTCCCTTCACGAGAAGAAATCAAAGAGCTAACTGTATGTATAACCGCGTTATTGTACTTAG
GGGAAGACATCTATTTAGTAGCTTTATACCACATGTTAGGCTGTCTTTGGACTCTCTAGGCTGCT
TACTAATGAATGCCTTTCGAACTACTCCCTCTATGCCAGAAGTACAACAATCTGCATTTATCAAT
AACCAGCTATCCTCTTAACCTCTCTTTTCCTAGAAATGGAGTACTCAAAGGCTTGCATCAGGAAA
GGCTTGCTCTATATTCAGTACTTGCATTCTCTTTTCTTTGACCATGGACAATGAAAGGGCATAGA
GATTTTCTTCATTAGCTTACGTGATGAGGTGATACAATGGAATAGAGTTCATTAAGATACGTCAA
AGATGATGGGCTTTCATGAAGTATATAATCACTAGTTCAATATCC
Found at i:473745 original size:21 final size:20
Alignment explanation
Indices: 473721--473764 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 20
473711 CCTTCACTTA
* *
473721 TCTCCACCACTTCCTCCTCGT
1 TCTCCACAACATCCTCCTC-T
*
473742 TCTCCTCAACATCCTCCTCT
1 TCTCCACAACATCCTCCTCT
473762 TCT
1 TCT
473765 TCCCAAGGGT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
20 4 0.20
21 16 0.80
ACGTcount: A:0.11, C:0.50, G:0.02, T:0.36
Consensus pattern (20 bp):
TCTCCACAACATCCTCCTCT
Left flanking sequence: Indices 473221 -- 473720
GTTTACCTCTGCATAAAGCCTTGCACCCACTTTTCTTGTAAATGACTACTTTGACTGACCTATCT
TTCTCGACCTATCCATGCCCAACACCACATCGTATGCCCCTAGCTCAATGACCCTCAATTAACAC
AGGAAGGTATGACTTTGACCCTCTAATTTCACTCCTGTACATTGACCCTCACTGCCAATTTTCTG
ACCATTAGCCACTGTTATGATTCAAGGCATTCTTTTGTTAACATTGAACTTTAGCTGCTTGGCTA
AGGATGCATTGATTCAGCTAGTGTTGCTTCCTGTATCCAGCAGGATAGTGATTGGTTTCCCTTTG
ATTTGACCCCAGTGAGTAACTACCTTTTGAACTCGTAACATTAGTAGTTACTCGTCTGTTACGAA
CGAAAAGGGCAAAGTAGGATTGCCAGGATCTCCCTATAATGCATTCAGTGAAATACGGGGTTCAT
CCCCATCCGTACCCTCCTGTTGGAATTGCTCTACTCCTTCACTTA
Right flanking sequence: Indices 473765 -- 474264
TCCCAAGGGTATCTCCGGGTATTCATTAGTTTCAATTTCTTCTCTCTACACTGATGCCCTGGGGC
CCATGGCTCCTTACAAGAGTAACACAATTTCTTGATTTTGGGGTTGGTGTCTGCATTAGGTTTAG
TAGGGTTGTTGTATCTTTTATGCCTATTTGAAAACTAGGAGCCAGGTTTCTTCGAGAGTGAAATT
TGATGATGTAGAAGATCAGTTCTGAGATTTTGAAGGCACAGATTTGGCGGGATTTTCTTCTTCCC
CAACCTCGGAAACAACATCTCCCACGACACACGAATTACCCGCAACGAGTTCACTCTTCGGAAAG
CCCCTACTACCTGAATAAGATCCATTCGAGAAACTTCACTGTTTGACAGGTTGTGTTCGAATTTC
ACACGCCCCTTTATATGGAGCCCCTTAGAAACTTCCTCCTTACGGACTACACCTCCGCTCAAAGC
TTCTTTAAGGGCTCGCGCCTCTGGCTTTTCGCACGTACGTACTCA
Found at i:481899 original size:24 final size:24
Alignment explanation
Indices: 481872--481942 Score: 106
Period size: 24 Copynumber: 3.0 Consensus size: 24
481862 CTCTCATGCC
481872 GTAGTTCCTCACTGAGTGAAAAGA
1 GTAGTTCCTCACTGAGTGAAAAGA
** * *
481896 GTAGTTCCTCACTGAGTTCAAGGG
1 GTAGTTCCTCACTGAGTGAAAAGA
481920 GTAGTTCCTCACTGAGTGAAAAG
1 GTAGTTCCTCACTGAGTGAAAAG
481943 GGGGCTCTGG
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 40 1.00
ACGTcount: A:0.28, C:0.18, G:0.27, T:0.27
Consensus pattern (24 bp):
GTAGTTCCTCACTGAGTGAAAAGA
Left flanking sequence: Indices 481372 -- 481871
AAGGAACCAAGCCTGGAACACATTTCCAACAATCAACTTCCCACTTTGGGTGTCCCCTTTCTTTG
ACGATTCCGCTGCGTCTTTAGAAAAAAAGGAGAAGGAAAGGCAGGGGTGGCTAGTCAGAAAAGCT
ACTATCAAAAGAAATTCGAATTCTGAATGAATCCAACCTCCCCAAGTAGGATTCGAACCTACGAC
CAATCAGTTAACAGCCGACCGCTCTACCACTGAGCTACTGAGGAACAACGGACTGAAGGAAACCG
ACTCTCATTCTTTGGACCCACCGCAGACCGAAAAGAAAAAAAGTGCGTAACTTTTTCTTTTTCAC
ATACATACACCGAACAAGCACCGGCTGCCTGCGCGAAAGCCGGTGCGCGTTAGGCGCATCCGTTT
TCTTGCAACGAGTAACTACTACTTCTTTTGGTTCTCTTTTGTTAGGAGGAGCAGTGAGCAACTAC
TAATGTTGCGAACAAAGGACACGTTCTACGTGTATCTCTCATGCC
Right flanking sequence: Indices 481943 -- 482442
GGGGCTCTGGGCTTTGAGTGAATTCACTCGGTGGGGTCGTGTTAAGTTTCGAAATTCTCACATTG
TAGCATCCTTATTGGTAATCTAGCTTTTACTTGAGCCCTTTAAAGAACTCCGCCAGAACTCTTAA
TATGAAAATACACATCATAAAATGACGCATCGAGCGAGACGAGACCATTCTCCCCCATTGTGAAA
GACGTTTTCGACCAACAACATCGACTAATATCCAGCTTCCTTTCTTTTTTCACATAAAATCTTTT
TCTACGATGAGTGTAATGTTTAACAAGATATTTCTGAATTCCTTCGATCTCATAGATATCATCCC
ATGTGTTGAGTTCTTTCATCTCTTATTCCAGACGTTGATCGACTTGCATAACTTGTGCCGCCTAT
CGCTGGCTTCAGCAAGACGCCACCCAATAAATAATGAATGTGGAATCAGACATCCATGGCAAAAC
CTGCCCTGCTATACTGCCCACCCCATCTGAGCTTTGGACTCTAGA
Found at i:482788 original size:24 final size:23
Alignment explanation
Indices: 482754--482839 Score: 118
Period size: 24 Copynumber: 3.6 Consensus size: 23
482744 CGCAACATTA
*
482754 GTAGTTGCTCACTGAGTGAAAAAG
1 GTAGTTACTCACTGAGTG-AAAAG
*
482778 GTAGTTACTCACTGAGTTCAAAAG
1 GTAGTTACTCACTGAG-TGAAAAG
*
482802 GTAGTTCCTCACTGAGTGAAAAG
1 GTAGTTACTCACTGAGTGAAAAG
482825 AGTAGTTACTCACTG
1 -GTAGTTACTCACTG
482840 GGGCAATTTT
Statistics
Matches: 55, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
23 6 0.11
24 48 0.87
25 1 0.02
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.28
Consensus pattern (23 bp):
GTAGTTACTCACTGAGTGAAAAG
Left flanking sequence: Indices 482254 -- 482753
ATAGATATCATCCCATGTGTTGAGTTCTTTCATCTCTTATTCCAGACGTTGATCGACTTGCATAA
CTTGTGCCGCCTATCGCTGGCTTCAGCAAGACGCCACCCAATAAATAATGAATGTGGAATCAGAC
ATCCATGGCAAAACCTGCCCTGCTATACTGCCCACCCCATCTGAGCTTTGGACTCTAGAAGTAGT
GTCTCCACCCCCGCAGTCATCCTGTGTGTTGCTCACCTTCCGCCTCCGCCCCCATTGTTTCGAGA
CAGACCACCTACGTAAGTAGTCTTCTCTTCTATTTTGATTTCAAGCTCAGGCTCTATTTTAAGCT
CAAGGTTCGTAAAAGGCTTCTTTGGTTCTCTTTTTGGTGAGAAAAATTGGGCTTTTCGTTCGTAA
CAGACGATACACTACGGCATGTTCCTTTTGGAGAGATACACTACGTTCGTGTATCTCTCAAAAGC
GTAACAGACGAGTAACTACTAATGTGTCCTTTGTTCGCAACATTA
Right flanking sequence: Indices 482840 -- 483339
GGGCAATTTTCGGTCCTGTTGCTTCTGTCAAGTTTCATTTGTTCTTGAAACATACTATACTTCAT
TTTGAAGTACATTTCTAAGGGCTAACTGGAATTCATCCTTTTTAGTCAACCTGCGGGTCCAAGTC
TCATGAAAAATTTCTATGGGTCTATCTCGACCAGGTTGAGTTACACCTATCGGGCCGGTAAACAA
CTGCAAGCTCTAGTCAAAAAGAAACCTGAAGTTAGTAGGATCATACATAGAATATGCTAACAAGA
AAGAACTTTCTCTTTGATGCAAGACAGGGTCTTTACTGATACACCCATGCGGGCTTGAGGCACTT
CTGACAGCCTCTTGCTCATCCCTCTGGTTTAACTCCTTTGTGCACGCAATACTGACTGTGCCCAG
CGAGTGGATTTATTCACGAGCCTAGAACGAGATATCACTCGCTGCCTAAAAAGCGAGCTACAGAA
TGTAGCGAGCTTATTCCATTATTGGGGGGTGAAGCCTGCTTTCAC
Found at i:514191 original size:23 final size:21
Alignment explanation
Indices: 514165--514211 Score: 51
Period size: 20 Copynumber: 2.2 Consensus size: 21
514155 ATCGATTGGA
*
514165 GAAAGACCACAACCTATTGAGAT
1 GAAA-ACC-CAACCTACTGAGAT
*
514188 G-AAATCCAACCTACTGAGAT
1 GAAAACCCAACCTACTGAGAT
514208 GAAA
1 GAAA
514212 TCCTACGGGG
Statistics
Matches: 21, Mismatches: 2, Indels: 4
0.78 0.07 0.15
Matches are distributed among these distances:
20 14 0.67
21 4 0.19
22 2 0.10
23 1 0.05
ACGTcount: A:0.45, C:0.21, G:0.17, T:0.17
Consensus pattern (21 bp):
GAAAACCCAACCTACTGAGAT
Left flanking sequence: Indices 513665 -- 514164
CTAGCTTAGGATGAACTTTGGCAAGGAACGGTGGCATCAGCAGACCCGATGAAACAAGTTCTTCC
CTACTTTCTTCGTACCCAACAAGTCTCTCGAGCATTTCTCCATTAATCATGAACGGCACCTCTTG
CATGTTGTTTAACAACCTGCATAGTCTCTCATAGGCTTCCACACTGTTGAACTCGGCGTGGAAGT
GATCATAGTCTTTTGAGGTCATGTACCTCCGAGGTGTTAGCGCTTCTTAACCTGGGTTCAAGTAA
CCCCCTTTTAGATCAGTTGGGGCAATTCCACCCATAGCATAATCTTGACTAAGAAATCTTCCACC
CGGCTGTCAACACGGAAGGAAAGAAGGAGATGGTAATGTATCTGATGCTGATCCCGGAGAGAAAG
ATGGCTTTCAGGAGGCTGATGAAGATGATCCGCTCAGTGACGAGGATGAACATTAAGTAGAAAGA
AGAGAGGGAGATTCTGGTAATCGGGGAAGGTATAGATCGATTGGA
Right flanking sequence: Indices 514212 -- 514711
TCCTACGGGGGGGAGGTGATGTGCCGAGTGCAACTTGGAGTTTGTTAGTGCATTGACATCTATCA
TGAGGCATGTGTACTCAGGGGTTGAGGTGAAAAACACAGGGAGTGGTAGCAGTGGTTCGCGTCTG
GCGGGTCCACCACCTTCTGAGGCTGCAATTGCGTTGCTAGTAGAAATGGGTTTCCCCTGTGCGAG
AGCTGAAGAAGCTCTGAGACAGCACAAACGGTGTGGAGATTGCAACTGATTGGCTATTCTCACAT
CCAGAGGAGCCGCAAGAGGATGATTACCTTGCACGTGCACTTGCCATGTCTTTGGGCAACTCCGA
TTCACCATCTATAGAAGAGGAGAAGAACGAGCCGGAGATCAAGATAGAGGAAGCACCGATGCAGC
TACCGCCAATAGATGAGATGCTTACCTCATTCGTAAGACTTTGGCAAATGAGGGAATCACTTGCT
TTCCCGGTCCGAGACATGCTTGTTACAATCTGTTCGCGGAATGAC
Found at i:514197 original size:20 final size:20
Alignment explanation
Indices: 514174--514214 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
514164 AGAAAGACCA
*
514174 CAACCTATTGAGATGAAATC
1 CAACCTACTGAGATGAAATC
514194 CAACCTACTGAGATGAAATC
1 CAACCTACTGAGATGAAATC
514214 C
1 C
514215 TACGGGGGGG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.39, C:0.24, G:0.15, T:0.22
Consensus pattern (20 bp):
CAACCTACTGAGATGAAATC
Left flanking sequence: Indices 513674 -- 514173
GATGAACTTTGGCAAGGAACGGTGGCATCAGCAGACCCGATGAAACAAGTTCTTCCCTACTTTCT
TCGTACCCAACAAGTCTCTCGAGCATTTCTCCATTAATCATGAACGGCACCTCTTGCATGTTGTT
TAACAACCTGCATAGTCTCTCATAGGCTTCCACACTGTTGAACTCGGCGTGGAAGTGATCATAGT
CTTTTGAGGTCATGTACCTCCGAGGTGTTAGCGCTTCTTAACCTGGGTTCAAGTAACCCCCTTTT
AGATCAGTTGGGGCAATTCCACCCATAGCATAATCTTGACTAAGAAATCTTCCACCCGGCTGTCA
ACACGGAAGGAAAGAAGGAGATGGTAATGTATCTGATGCTGATCCCGGAGAGAAAGATGGCTTTC
AGGAGGCTGATGAAGATGATCCGCTCAGTGACGAGGATGAACATTAAGTAGAAAGAAGAGAGGGA
GATTCTGGTAATCGGGGAAGGTATAGATCGATTGGAGAAAGACCA
Right flanking sequence: Indices 514215 -- 514714
TACGGGGGGGAGGTGATGTGCCGAGTGCAACTTGGAGTTTGTTAGTGCATTGACATCTATCATGA
GGCATGTGTACTCAGGGGTTGAGGTGAAAAACACAGGGAGTGGTAGCAGTGGTTCGCGTCTGGCG
GGTCCACCACCTTCTGAGGCTGCAATTGCGTTGCTAGTAGAAATGGGTTTCCCCTGTGCGAGAGC
TGAAGAAGCTCTGAGACAGCACAAACGGTGTGGAGATTGCAACTGATTGGCTATTCTCACATCCA
GAGGAGCCGCAAGAGGATGATTACCTTGCACGTGCACTTGCCATGTCTTTGGGCAACTCCGATTC
ACCATCTATAGAAGAGGAGAAGAACGAGCCGGAGATCAAGATAGAGGAAGCACCGATGCAGCTAC
CGCCAATAGATGAGATGCTTACCTCATTCGTAAGACTTTGGCAAATGAGGGAATCACTTGCTTTC
CCGGTCCGAGACATGCTTGTTACAATCTGTTCGCGGAATGACGGT
Found at i:522556 original size:29 final size:29
Alignment explanation
Indices: 522524--522585 Score: 79
Period size: 29 Copynumber: 2.1 Consensus size: 29
522514 CTTATGTATA
* * *
522524 CCGCTATGGAAGTTTGTGTCCGGCTTCAC
1 CCGCTATAGAAGTGTGTGTCCAGCTTCAC
* *
522553 CCGCTATATATGTGTGTGTCCAGCTTCAC
1 CCGCTATAGAAGTGTGTGTCCAGCTTCAC
522582 CCGC
1 CCGC
522586 GGCGAGGAGG
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.15, C:0.31, G:0.24, T:0.31
Consensus pattern (29 bp):
CCGCTATAGAAGTGTGTGTCCAGCTTCAC
Left flanking sequence: Indices 522024 -- 522523
AATCCGGAAATCAAAAGGTAATCCGGCCGTGCACTGCTTGATACTGCTCCAGCTAAGACTTTTCT
CTTTGACAGTTGAAGCTGCATCACCAAGAGTATAAAGCTCTCAATCAATCTATAGTACTCTTTCT
CTTTCAAACTAGAAATAGGTATACCGGAGAAAAGAAGGGAGGTAGAGCGCTTTACTACTTGCTAA
TAAAAGTCGATTAATAGAAAGCGAAGCCTTGAGTAGAATCTCTGAGAAAGCATTCTGAATGAGAG
GAGTTAATTAGAGGTTTTGGAGGCCCATATTGCGTAAGAAGAGTACGAGCTATTGTGCTTTCAGA
AGTCGAACTGTACCTCCGCGAAAGTGAGGCCAGCCACATAAGTTCACCTGCCCAGCCGACTCCCG
CATAAAAAGATCCAGCTTTAGCTTATGCTTTCTTCTGTTTTAAGAGAAAAAAGTCTAAGGAAAAG
AAAGTCAAATGAGTACTCCCACTCAAAGTTGGATTCTTATGTATA
Right flanking sequence: Indices 522586 -- 523085
GGCGAGGAGGAACTTTTTCTATTCAGTGAAGATTATTTCTCTATTTGATGAGTCTATGAAGAAGC
TAGTAGTATAGAGAATTTTGCTTAGTGATCAGTTTCATTCTTTTCTTCGGAGATTCGAGAGAGCG
AAATCCAATCCATAAGTATGCCCTTTTCACGCTGTTTCATAACAAGGAGAATTGGATAGGTGACT
TTCCCTTCAGCTTCAGTGCTAAGCTTTTACGACGTATTTGAGAAAGCAGTAGTGCACGCTTCAAG
AGAACCCGGCCGGAAAGCTAACAAACTGTCTTGAAACCTGATACCAATAGGCAGTACCACAAGAA
AAGAAGCATTCGAGGTGGACCAGGTCTATTTGCACATAAAGTATCCGGTTCTCTTCGTCTATCCT
TCAGTACGAGTTATCCGGTGCTTTGGCTTGGATTCCTCCCACCTGAGCATTCTACTTCCCCCTAT
TGGACATTCTCCTTCCCCCCTATTGGATTACTAGTCTCGCCTTCT
Found at i:523048 original size:22 final size:23
Alignment explanation
Indices: 523023--523067 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
523013 CCCACCTGAG
523023 CATTCTACTT-CCCCCTATTGGA
1 CATTCTACTTCCCCCCTATTGGA
*
523045 CATTCTCCTTCCCCCCTATTGGA
1 CATTCTACTTCCCCCCTATTGGA
523068 TTACTAGTCT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
22 9 0.43
23 12 0.57
ACGTcount: A:0.16, C:0.40, G:0.09, T:0.36
Consensus pattern (23 bp):
CATTCTACTTCCCCCCTATTGGA
Left flanking sequence: Indices 522523 -- 523022
ACCGCTATGGAAGTTTGTGTCCGGCTTCACCCGCTATATATGTGTGTGTCCAGCTTCACCCGCGG
CGAGGAGGAACTTTTTCTATTCAGTGAAGATTATTTCTCTATTTGATGAGTCTATGAAGAAGCTA
GTAGTATAGAGAATTTTGCTTAGTGATCAGTTTCATTCTTTTCTTCGGAGATTCGAGAGAGCGAA
ATCCAATCCATAAGTATGCCCTTTTCACGCTGTTTCATAACAAGGAGAATTGGATAGGTGACTTT
CCCTTCAGCTTCAGTGCTAAGCTTTTACGACGTATTTGAGAAAGCAGTAGTGCACGCTTCAAGAG
AACCCGGCCGGAAAGCTAACAAACTGTCTTGAAACCTGATACCAATAGGCAGTACCACAAGAAAA
GAAGCATTCGAGGTGGACCAGGTCTATTTGCACATAAAGTATCCGGTTCTCTTCGTCTATCCTTC
AGTACGAGTTATCCGGTGCTTTGGCTTGGATTCCTCCCACCTGAG
Right flanking sequence: Indices 523068 -- 523567
TTACTAGTCTCGCCTTCTAGTTACATACTATCTTCTTACAGTGGATCACCATCTTGACCTTTCCT
ACGTTCATGCGGGAGCCTTGATTTAGTACTGGGGCTATGCCTATTGCTCTGTTGCCTATAAGTCT
CATACATCTGTATAGGATCTCATCCATATTATCTTATAGGAAGAGTAGTAACTACCTGCATTCGT
ATATTCCAAAAAGAAGAAAGAATTCAACCTAGTAGAGTATAACTTTGCTTGCCTAGCCTTTCAAA
GCTATTGTTTGATTCTAGAAGGAGATTGGAATTGATTGGAAGAAGAAATAATATCTAAAGAAATA
GGAGTCTACTAACTAAGCTAAGAGAAATAGGAGTCTACTAAGCGATGGTAATACGGATTCTCCTT
TGAAAAAAAAAAGCAAGGAAATCAAGTCAATATTCTCTGGTCAATGAACGTTAAGGAATTTAGAG
AACTCAAGTCCACCTTCCTCCTACGATATCTCTTTACCCTTGGGT
Found at i:524290 original size:18 final size:18
Alignment explanation
Indices: 524267--524302 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
524257 ACTTTAATAC
*
524267 GTCTTCCCGCCTACTTTA
1 GTCTTCCAGCCTACTTTA
*
524285 GTCTTCCAGCCTGCTTTA
1 GTCTTCCAGCCTACTTTA
524303 CTGAATACCC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.11, C:0.36, G:0.14, T:0.39
Consensus pattern (18 bp):
GTCTTCCAGCCTACTTTA
Left flanking sequence: Indices 523767 -- 524266
CAAAGCAGATCCCCTTGTCCCATTCCAGGAGAAGGAACGAAAAGTAGCTCTACTGATAAGTGGAG
GAACGACCGGCAAATCCACAAGAAGGAACTACACCTTTCGGGTGCAGCCGCTCAAAAGGCGGGTT
AACTTCCCAATGGTGGAAGGAATTGCTCCCGGTTTTTAGTTACTATCTAGCTTTATAGTTTGCCA
GGCCGATTAGGTTACCAATGCGTTATGGAATAGCTCCAGAAATCTAGTTATTACCTAGCTTCAGA
TGTTCGACGTTGTGATGAGAACTTTATTAAAGAGTTAGGAAGGAAGTCTCCCTTTCTGACATTCA
AGTTGTTACCAAGGCCGCAGGTTTCGGTTTTCTTACTTAATTATTGCCAAAAAATCAAGGCGCGA
AGCAATCGCACTGTTTTCATGAGCTATGAACATAACCTAAAACTCCGTTTTCTGCTTGAGCTCGT
TCGAAGTTCCGTGTCCGTAGCACTTGTCTTCTGAGACTTTAATAC
Right flanking sequence: Indices 524303 -- 524802
CTGAATACCCACCTCAATCCACCTCCTGCAGCGGAACCAGCTCGTTCAAAGTAGTTAGCCCATGC
CTTTCCTTTTGTATAAAATCGCCTGTTGGCACTCCCCCACAAAAAAAGGTATTTCCTTCCGAGAG
TATACTCTCTTTCTGCTTTCTTATGGGCACTCGTTTTTCCCGGGTATCTGGTTCCAGTTACTTGG
AAAGGCTTAAAGCTCTACCTTGCAGTTCAAAGTCTAGAAGCAATTCCCTCGGTGTATCCATAAGC
CAACAATATATTTCATAAATATTGGTGTCTACCGCACAAAGAGTATCAACCGTGTCACATTCGGC
CACATTGGCCCCCTCCGAAGCACCCCCGTGTGTATCCGGCGTTTTTTCTTTTTGAGCTTGAAAAA
CGCGGTCTTAATGTGTCCCTTCTTCAACCAATAATTACACGTTAGATTCTTGTGCTTAGACTTTG
AACGGGTCCGTGTATCCTTCGGGTTTCTGTCCTTTGACCTACCCC
Found at i:526286 original size:16 final size:16
Alignment explanation
Indices: 526265--526297 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
526255 GAGAAAGCAA
526265 TAGGCATATAGATACC
1 TAGGCATATAGATACC
526281 TAGGCATATAGATACC
1 TAGGCATATAGATACC
526297 T
1 T
526298 TAGGAGGTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.36, C:0.18, G:0.18, T:0.27
Consensus pattern (16 bp):
TAGGCATATAGATACC
Left flanking sequence: Indices 525765 -- 526264
CACAGAAGGAGTTCTCTTTTATTATCATATTAGTTAGCAACTCCAATCTAATAATGATCTTTGAA
GTAACATCTAATTGAGCTACCTAGGAAAGAAGACCTCAATGAGCTAGAAAGTCATGTTTGGAAGG
AAAGAAAGACCTGGCAAAGAAAGTAAGGTAGCGGGCAGTGTAGTGAGTGCTCATATGAAAGGGGG
CATGGGCTTTGAACTCAGTGAGCAACTACTAATGTTGCGAACAAAGGACACATTAGTAGTTACTC
GTTGCAAGAAAAGTAGTTTCATTCTTTTTTCCTATTCTTTTGAAGAAACTCATAGAGTTTTCTTT
CAAGAAGCAAGGTTACGGCCGAGATAGTTCTTTTTATTACCGAGATAGGTGTAACCGAGGTTTCT
TAGGCAAGTCAAATGCTTTAGTACTACAAAGCAAGCACTGCTTTAGCTAGTCAAAGAGTTGGCAT
CTCGAGTTAGTACTTGTAGGCAAGTAGAGTGGTGCGAGAAAGCAA
Right flanking sequence: Indices 526298 -- 526797
TAGGAGGTAAGCTAGGTAAGAAATTCAAGTTGTATGTGGAAGCAGAGATAGATGCCTAACTAATA
GAAGAGATAGGAACAAAGCAAATAGTTCAATCCCAACAAGTTGTTCAGTGTTTCAAGTTTTTTCC
GTCGCTTGTCTTCTAAAGAAAAGTTTGTAGTAAGGAGAGAGTAGTGTAGTTTCTAACTTCATTAG
TGTAGTTTGTAAAGCTAGAATCAGTTTCAACAAGCAAGTTCTTTCTTGCCTAGTTGACAAGGTGC
GCAGCGGTAGAATTAAGTTACGAAGAAAAGAATGTAGTGTGCTTTATTAATCCAGTACTTTCGGA
AGTAGTAAGGTTCAAACCCTCCCTAGCTACCAATCAAATCAGTGTTGAAAGCATACCATCCCTTT
TCACTCGTAACATTAGTAGTTACTCGTTGCGAGATAAAGCACGGATATTTTCGTTGATGAGTATG
AGTGATAAGTGCCCAAAACCCCAGAATGCCCCCTCTTTTTCTTTA
Found at i:539651 original size:22 final size:22
Alignment explanation
Indices: 539626--539668 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
539616 CTCCATTTAC
539626 ACTTTGAAT-AAGCACATTACCG
1 ACTTTGAATAAAG-ACATTACCG
539648 ACTTTGAATAAAGACATTACC
1 ACTTTGAATAAAGACATTACC
539669 TATTTCTTCA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 17 0.85
23 3 0.15
ACGTcount: A:0.40, C:0.21, G:0.12, T:0.28
Consensus pattern (22 bp):
ACTTTGAATAAAGACATTACCG
Left flanking sequence: Indices 539126 -- 539625
ATAGAAAAAAGACTAGCCGAAAACGCGGTTCCTTTCGAATACGCCGCTGCGCCCAGCCAGTCATT
GGTTACTGCTCGTTTTATCCCATGACAAGGTTGAATAGCAGCAGTCGAGGAATGAGGAAAGCTCT
TTTTTCTACAGCCAAAGCCAAGCGCAGACGGCATATGAAACCCCGTATTTCAAAAAACCCCATGA
ACGAAACTCACTCAATCATAAGATTGCCAAAGAAAGGAACGCGCGCCAGAATGAAATACTTCAAT
TAGGATCAGCTACTACATCTCGTGGGTAGACCAACCTGGCGGCCTGTGAAACTGAAGCAGTTCCT
GCAATGAGATCCATCACCGAAGTCCAGACATTACCTATAGCAAGAAAGACAGACTACCGATAAAG
AAGAGCCGAAGCCCACAGACTCGGACTTTGAGCAGTTGGCATCTTCTTTCAGTGAAGAGCTTTAG
GCTTTTCGTTCGTAACATTAGTAGTTACTCACTACCTCCATTTAC
Right flanking sequence: Indices 539669 -- 540168
TATTTCTTCACCACACTAAAGAAATATAAGCAGCTCGTGCACCAAGGTTTTGAGCACTTTAGGAC
CATAACCTACTGAGCCAAAGAAGGCCGATTTACTATTTATTTACTAAACGAATTATGACACTACT
TGCACATACACTGCCATACTACCATAGACAAATCTATCCCCTACCACGGACTAGGCACGGAGTGT
TGAAGAAGCGGCAGGTCAGCCAATAAAATAGAAAGGGGAAGCTACGTCCCAGCGGTCAGAGTGGA
CCAGTGATTGTATCACCAGAAATGACCAGAGAACTGCATTATGCAAGTCAAAACCCCGCCTGCTG
TGGCTCCACCTGCTTGAACTTCACTCCAAGTGTAACTTATACATACTCCAAATCCCCCCTCCCTC
ATTTACTATATGACACCGCACTTACTACATCAGAGTTGACCCTGAATGCTACCCCTTGCATTCGC
TTAAGCACATCACACAGTGGCTCGTACTCGATGCTTTGTATCGAA
Found at i:540577 original size:21 final size:22
Alignment explanation
Indices: 540544--540591 Score: 53
Period size: 21 Copynumber: 2.2 Consensus size: 22
540534 AGAACTCAGA
*
540544 TTACTACTATGGATGTAGAG-C
1 TTACTACTATGGAAGTAGAGCC
* * *
540565 TTACTCCTTTGGAAGTCGAGCC
1 TTACTACTATGGAAGTAGAGCC
540587 TTACT
1 TTACT
540592 GCTACCGCTA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
21 16 0.73
22 6 0.27
ACGTcount: A:0.23, C:0.21, G:0.21, T:0.35
Consensus pattern (22 bp):
TTACTACTATGGAAGTAGAGCC
Left flanking sequence: Indices 540044 -- 540543
AATCCCCCCTCCCTCATTTACTATATGACACCGCACTTACTACATCAGAGTTGACCCTGAATGCT
ACCCCTTGCATTCGCTTAAGCACATCACACAGTGGCTCGTACTCGATGCTTTGTATCGAATCCTG
GATGATATGATGGGGAAATCCTAACATATCTTGCTAAATAAGAGGCGTTACACCTCCTTCTCAGG
GGATTTCTCGTTCAAGGGTAAAACACTCGGGAATCGTGGATTGTATTAAAGAAAATTCAGGTAAG
GTTGGACAGAATGAAATCCTGGTTGCAATAGATGGAGCTTAATGAAATCCAGCTATAGTTGGTTG
GCATTCTAACTGGGTATAAGCCTAGCAGAACACTAAAAGTCAACTAATTAAACCATGCTTGTCTC
TCGATTCTTATCCTTCTATTCTGTGTTATATTATTTGGCTGATGGATCTAGCAAGAAATCAGATT
AGCAAACCGACCAAGAAAAGCAGTATTGATCACAAAGAACTCAGA
Right flanking sequence: Indices 540592 -- 541091
GCTACCGCTACGAGCTATAGCATCTAAATCCTCTGAAATTCATCATACAGCAAGCTAGCACTGTT
CTGAGGGTCTTTTCCCTGAAAGCCTATTGCTTTCCCCCCTCTTGAATATCACCAATTCCCATATT
GGGAAAGACTAAACTATCTTTCTTTGCCTGTCAATTCAAGTCTGAAGCTTTCCCTGGATGTGTAA
TAATGAGAAAATCCAAGGAGTCTGGTATTACCGCTCGCTCTGGACGGACCCTTGAGAATTGTTTC
GCTTTTGTGATTCTCTTCACTTTCGCCTATCACTTGGGATTGGTGATCCAAAGTACCTTCCCAGT
TAATAGTTCTTTGAGGCCAGTATAACATCTTCCATTCGTGATTCAACGATCGAGACCATGTAGTA
TCTATACTAACAACGAAATATTGGCTTCCGCTTGCTTGCCGGTGTGAGTGAATATAAGATAGCTC
CGTCCGCTTTGTTTTCGTTGAACGAGAAGATTAAGTGGAAATTCC
Found at i:559110 original size:17 final size:17
Alignment explanation
Indices: 559071--559118 Score: 71
Period size: 17 Copynumber: 2.9 Consensus size: 17
559061 TTCCATTCTC
*
559071 AATCATATATCTAG-AA
1 AATCATATATATAGAAA
*
559087 TATCATATATATAGAAA
1 AATCATATATATAGAAA
559104 AATCATATATATAGA
1 AATCATATATATAGA
559119 TATAGATAGA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
16 12 0.43
17 16 0.57
ACGTcount: A:0.52, C:0.08, G:0.06, T:0.33
Consensus pattern (17 bp):
AATCATATATATAGAAA
Left flanking sequence: Indices 558571 -- 559070
ATTAGTGCATCAAAAACACTTAACAGAGCAGGTATCTTTCGTAGATGTGCCACGATGTTGTAATC
GGCTTTTGTGAACTTCGGTTTCTCACTAGGGCCATCCCCTTCTTCAACCTCAATCTCCTTACCTT
TTGACTTGTCCTTTTCCTACTTAGAATTCTGAGACGTTGTAAGGCATTTCAAAACCTGAATAGCT
TTCTGAAAAAACGAAGACTATGATCATAGGCCAACCAACAAAGCTATTGAGTAGGAAAGCTGCGG
ATTTGCTATTGGACTCAGTTAATTACTACTTTGAAATGACTTACTCAAAACAATGCCTTACTAAA
CACAAATAGGTAGGCCACTCACTCATTCCAGGCTCGCGCATTGGCATTGTTCTTTGAGTTCTTTG
ACTAGTACGGAAACACTTCTTTATGTCAGGCGCGAAGCGGTGAAACCCCGCCCGGTAAGAAGGGA
AACCTCCAACTCGGTGGGTGAAACAAGTGGGCAAATTCCATTCTC
Right flanking sequence: Indices 559119 -- 559618
TATAGATAGATCTACACTCTTTTCTTTCCCAAGCGGTATCCCTTTGATTCATTCGTGTGTGTCGA
CTTCGTTGCTTTGCCTAAATCACTCTATATCTAGTTACGTTCTTCTTTTTTTTCCTGGCTGGGTC
TCCGGATACTGTAACCCCGAGCAAAGTGCGTGCGCCTTGCTTCGCAGGCTCCTTCGTTCAATCGG
GCGGGGGAATTTCTTTTTTTCCTGTAACTAGTTATTGGCTCTCTCTTCGTGGTTTTTATTATGGA
CTTGATGCAGGGAACAACCATGTTGAAGGTCCAACCATGGTGGATGCACAGAATAGGGTGTGCAA
GTGTTAGAGAGCTCTATTTCATAAAACTCTCTCGTTGGAATCAATTTCTATAGGAGGATTATCAA
CCTGGTAATAATATGTATGTTTCGAATCATGAACGAAAGGATAAAGGGGATTTCCATTACTAGAC
TTTTGATTCACCAATCAATTATGCAAGATGTTCAGGATAGGAATC
Found at i:568476 original size:27 final size:24
Alignment explanation
Indices: 568446--568505 Score: 84
Period size: 24 Copynumber: 2.4 Consensus size: 24
568436 GGCATGTATA
568446 GAGTGACAACAAAGGTAGTTCCTCACT
1 GAGTGA-AA-AAA-GTAGTTCCTCACT
*
568473 GAGTGAAAAGAGTAGTTCCTCACT
1 GAGTGAAAAAAGTAGTTCCTCACT
568497 GAGTGAAAA
1 GAGTGAAAA
568506 GGGTATTTGC
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
24 22 0.69
25 2 0.06
26 2 0.06
27 6 0.19
ACGTcount: A:0.37, C:0.17, G:0.25, T:0.22
Consensus pattern (24 bp):
GAGTGAAAAAAGTAGTTCCTCACT
Left flanking sequence: Indices 567946 -- 568445
TATATACTAGCCAAGCCAGACTTCTACTTCGCGAAAGTAGTCCAGGGCATGCATCGCTTTCATAA
AAAGGAACTGAAAGAGCAGCTACGGATGATCAAGAGCCCAGCTGACAGGGATGTTCGGTAAGGCT
TGGAACGTAGTAATGGAAGGCAGGTCCTCTCAGTCTATCAGCCTCGTATACGTATTGGCGAAGCC
CCTGTCCACCCAAGGCGCGAAGCGGCGCTACGGCATCTCGTTCACCAGAAAGAGTAGCTGGGGGT
GCTGCGAGTTGATGTCAGTGAGATGAGTATGGACACGAGAAAAGGCGTCGTCGTCGCTCATGATA
TCCTCCATCTTCAGATCGAGGATGGGTTTACTACTTGTAAGAAGTGCACCCAAATTAAGGTGATT
TCCCTCTACAACCAAAGGGATAGTAGGACTTGGGAGATCATCACGGGGTCTACGAATACTACTTG
GTGAGGCTTTTCGTTCGTAACAGACGAGTAACGTAGGCATGTATA
Right flanking sequence: Indices 568506 -- 569005
GGGTATTTGCAAACTTTTTAGGTTACAAACAAACGGGTGTACAAACAAAGTAGCAGATGCCGAAA
GATGGCTCTACTCTTTTGGTGACTGGTGCTTAATGCTCCGCCCTTACTTAGATCCTTCCTCAGTG
GGGAGAAGATAGTTATTATGAGGATGAGTGGATACAGCAGCTGCAAGACAGAATGGGTAGTAATG
GAAAATGAACCATGCAGCAATAGATTCAAACCGTGGTGGTGACTAGATAGATTCAACCCGGACTA
GATTCAATTAAGATGTTATGGAGAGTGGGAGTTTTAGAGAGCAGTTTCTAAAGGAAGTACATAAC
TCAAGCATTGGTGGTCACTCTGGGTACCTATGTGAGAGTAAAGGCACTGTTCTATGGGCCACGTA
TTAAGGAGAAGGTGCACATTGATGTGAGAGTATGTGAACTAACCAAAGGTGAGCATGTGCCCTTA
CCAATACAGGCAAAGTCTTTCTATTTCATAATAGACTTGAAACAA
Found at i:568490 original size:24 final size:23
Alignment explanation
Indices: 568456--568507 Score: 95
Period size: 24 Copynumber: 2.2 Consensus size: 23
568446 GAGTGACAAC
568456 AAAGGTAGTTCCTCACTGAGTGA
1 AAAGGTAGTTCCTCACTGAGTGA
568479 AAAGAGTAGTTCCTCACTGAGTGA
1 AAAG-GTAGTTCCTCACTGAGTGA
568503 AAAGG
1 AAAGG
568508 GTATTTGCAA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
23 5 0.18
24 23 0.82
ACGTcount: A:0.35, C:0.15, G:0.27, T:0.23
Consensus pattern (23 bp):
AAAGGTAGTTCCTCACTGAGTGA
Left flanking sequence: Indices 567956 -- 568455
CCAAGCCAGACTTCTACTTCGCGAAAGTAGTCCAGGGCATGCATCGCTTTCATAAAAAGGAACTG
AAAGAGCAGCTACGGATGATCAAGAGCCCAGCTGACAGGGATGTTCGGTAAGGCTTGGAACGTAG
TAATGGAAGGCAGGTCCTCTCAGTCTATCAGCCTCGTATACGTATTGGCGAAGCCCCTGTCCACC
CAAGGCGCGAAGCGGCGCTACGGCATCTCGTTCACCAGAAAGAGTAGCTGGGGGTGCTGCGAGTT
GATGTCAGTGAGATGAGTATGGACACGAGAAAAGGCGTCGTCGTCGCTCATGATATCCTCCATCT
TCAGATCGAGGATGGGTTTACTACTTGTAAGAAGTGCACCCAAATTAAGGTGATTTCCCTCTACA
ACCAAAGGGATAGTAGGACTTGGGAGATCATCACGGGGTCTACGAATACTACTTGGTGAGGCTTT
TCGTTCGTAACAGACGAGTAACGTAGGCATGTATAGAGTGACAAC
Right flanking sequence: Indices 568508 -- 569007
GTATTTGCAAACTTTTTAGGTTACAAACAAACGGGTGTACAAACAAAGTAGCAGATGCCGAAAGA
TGGCTCTACTCTTTTGGTGACTGGTGCTTAATGCTCCGCCCTTACTTAGATCCTTCCTCAGTGGG
GAGAAGATAGTTATTATGAGGATGAGTGGATACAGCAGCTGCAAGACAGAATGGGTAGTAATGGA
AAATGAACCATGCAGCAATAGATTCAAACCGTGGTGGTGACTAGATAGATTCAACCCGGACTAGA
TTCAATTAAGATGTTATGGAGAGTGGGAGTTTTAGAGAGCAGTTTCTAAAGGAAGTACATAACTC
AAGCATTGGTGGTCACTCTGGGTACCTATGTGAGAGTAAAGGCACTGTTCTATGGGCCACGTATT
AAGGAGAAGGTGCACATTGATGTGAGAGTATGTGAACTAACCAAAGGTGAGCATGTGCCCTTACC
AATACAGGCAAAGTCTTTCTATTTCATAATAGACTTGAAACAAAA
Found at i:571138 original size:24 final size:24
Alignment explanation
Indices: 571082--571132 Score: 102
Period size: 24 Copynumber: 2.1 Consensus size: 24
571072 ACACGTAGGC
571082 TTTGAACTCAGTGAGTAACTACCT
1 TTTGAACTCAGTGAGTAACTACCT
571106 TTTGAACTCAGTGAGTAACTACCT
1 TTTGAACTCAGTGAGTAACTACCT
571130 TTT
1 TTT
571133 TCACTCGTAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.27, C:0.20, G:0.16, T:0.37
Consensus pattern (24 bp):
TTTGAACTCAGTGAGTAACTACCT
Left flanking sequence: Indices 570582 -- 571081
CAAACTGCAGATTGCCAGGACAGGCCCATCCTTTGTGGCAGTTCGCTCCGCCCCTAGCTTTGTTC
ATAGTCTTCTGTTCATTCTGCTACTGAAAGAAAATGTCTCAAGAAAATAGAAGGACCATGGAGCT
TAGCCAAGAGTGAACATAGCATTGTGCGGTTCCGCGAAGCCGGTCACTTTTGACTTTGGTTGAAA
AACTATTACTAATAAGTAGGCAGCGGAAATTCTACAAAGAAAATAGGGCGCATCTATCGGAAAGG
TAGGAATTTCGGGTTTGGAACATGGAAAGCGTGATGGGCTGATCATCTCCCGTTGATATGGGGGA
AGTCACTGAAAGCTCTGAATCGGATGAGGTGGAAACGTGTCTCTTTCTCTGCTTTTCCTTCGGAA
ACTTTTCTTTTCTTACCAATTTATAGGTTGCTACGCCCAGTGAGTAATTACGGCATGAGAGAGAA
ACGTAGGCATGCAAGAGAAACTACTAATGAGAGATACACGTAGGC
Right flanking sequence: Indices 571133 -- 571632
TCACTCGTAACATTAGTAGTTACTCGTCTGTTACGCTTTTGAGAGATACACGAACGTAGTGTATC
TCTCCAAAAGAAGTAGTAGTTACTCGTCTGTGTAGAACAAAGAAGCCCTTTCCTTTCCTACAATG
CAAGAGTCCCGATTCCATGCTTTGATTAGCATTCAGGACCCAGAGAGCTGCCTTCGCTTTTGGCC
TTCAAAGTAGTTCGTATTCCTATCATACCATCATGCGGATTTTCTAGTGCGTAAAGCTTTGCCAG
AAGCAAGATGAGGAGGCGAAGCGTAGTATACAAGGCTCGTTCCGTGCTTTCTTGACGAGCTACGT
AACCACTTAAGAAAGAAAAAACCAGGATTTCAAGACATTATCTCTTCTACAAAGGCATTTACCGA
GCGAACGAAGCCTTCCTTCCTTTTTTTTTCTGACTTCAACCGCTCCGCGCCTTCCGGAATTCAAG
CTTTATCATCCCTGCTATCCACCTTGAGAACCAGACTACGCCCCT
Found at i:578660 original size:14 final size:14
Alignment explanation
Indices: 578641--578668 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
578631 TGTTTACATA
578641 TAGTTATAACAAAC
1 TAGTTATAACAAAC
578655 TAGTTATAACAAAC
1 TAGTTATAACAAAC
578669 CAAAGGAGAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.50, C:0.14, G:0.07, T:0.29
Consensus pattern (14 bp):
TAGTTATAACAAAC
Left flanking sequence: Indices 578141 -- 578640
ATCAACGAATGATGGAACCTAACCTTGGTATATGATATATCCGTACCCCCATCTTATGATTGGAA
ATCTTATTCGGACGAAAAGCGCAGATCCATATAGATCAGGATTGTTGACTGGCCAGGATAGATGG
ATAGATGCCTTGAATGAAAGGGAAACTCTTTTCTTTTCTGTTTAGATACCACTTTCCTTGGATAG
CTCTCTTCTGTTAGGGACCTTCCTTTTGCAAAGATACATTTATCATATCAATTGTTTACCCATCC
ATATAGTTTGGTTTGATTTCTCAGATCACTTGTTGACAGATCCATCTTTAGAGTTCTAACTAATT
ATTAAATCATACCTAGATCAAATCAAGGCTATAAACAAACAGGAAAAGGAATCCAATTAGGATTG
GGGAAATAATGATTAAAACAACGATCCAGGCATCTATATGAATGATATCACAAGCACAAGCAACT
TGCTAATAACAATGCCACATATCACCTATTTGAATTGTTTACATA
Right flanking sequence: Indices 578669 -- 579168
CAAAGGAGAGAGATTCCTCAACTAAAGATGTGGAGCAAAGGAAAGGAGATCTATTCCTCTTCATA
AGATAAGATAATATAATCTCTATTCCGTTCGTGGTAGGAACCCCTCCTAGGCTCAGCTTTCTCAG
CTCCGAATCCTTATTTTTGGCCATGCAGAACCCATACTCGACTTTACTTAGCAGCTCTTTACTTC
TCCTCTCTGCGAGGAAGGTTGTCTTTCTCTAAGCTGCGGCCGGTTGGGCAAGGCTGGTCATTTCA
TTTTATTGAAGCCATAACCGTACCTACCGAAAGAGGAAGAAACCAGCTGTTATCACTGCCCTGCA
CCCGCGAGGAACGACCCTAGGAACTATCTTGCGGGCTCTCGTAAGCTCAAAGAGTATTCTCAAAA
AGCAGTTTGGACGGGACTTCCTGAATATCAATTCTTGAGGAGAAAGGACACTCTAGAGTTGGGCT
TCTTTCTTTGTTTGTTTTGGAACGAGCATGCTCCAGTAGGTAATA
Found at i:583270 original size:12 final size:12
Alignment explanation
Indices: 583253--583277 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
583243 TTGGTATCCT
583253 TATATGCTTCAA
1 TATATGCTTCAA
583265 TATATGCTTCAA
1 TATATGCTTCAA
583277 T
1 T
583278 GGGCGTGGCC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.16, G:0.08, T:0.44
Consensus pattern (12 bp):
TATATGCTTCAA
Left flanking sequence: Indices 582753 -- 583252
GTAAGCTCAAATTGGAAAACCACAACTATTGAATCAACAAGGCTTTCCCCGGGGAGTAATCACAC
TTTTGATTATTATCCACGTCTGCTAGATTCTTGTCCGAGATGGAGGTCGCGTAGTGAGGTAGGCC
CTATGTAAGGATCGCCTTTCGCTACCTAGAGTTCTCTCTCCTGGGTCAAGGAAAACTTGAGCTTC
CTAAAGCAACTTCCTGACTTAGATGGTGTGTTCCCCAATCCAAACTCGGATCAGTTGGCAGGCAG
GCGGATTCTGTGCCTGACTACGAAACTCTAAGCTATTATTCGATCTCGAAGAAATCCGGCCTTTC
GGAATAGAAATAACCAATCTTCTTCTTTTTTCGAATTCCTCCTATATTGAGTCTTCAGTTAGTAA
ATAGGTCAAATGTGCTATAGCGAATTCGGCGAGGAGGTAAAGAAAGATTTTCCTTTATTCTCTTT
TGGGTAGATAAAGATTTGGTATACTAATGGTATCTTTGGTATCCT
Right flanking sequence: Indices 583278 -- 583777
GGGCGTGGCCATTTCTATTTACTGGCTAGCCTCAATCAAGGCTACTTGACTTAGTGGAGTCAAAA
TTCGCGCTTTTTCTTCACTTTCCGCTCAAGTGAGTCGCACTTCCACCTCACCTAATGAATGTGCC
GTACGTAGGTGCGCCGTACACGCCTTTTTTCCATTATCCGAGTCCACACTAAGGGGTGCAATCAG
CATTTCAATGCTTACTAGAAAAATGGGATTCCTAGACTAAACTCGTCAAATACTCGTGGCTGATA
GTACTCTTCAACATCAGCCTGATAAGTCCAAATTCTCATCTTTATCTTCACATATTTTTGAGCAG
TGAAAATAGCAAGATTCCTTCAGTTTGCTAGACAAAAGCCAGCAGAGAGTTGTCAAGCCAAGTCA
ATATACATAGGTATATTCTTATTTATAGGTCGATTAAGAGTAGTAATGGGTGAACTTCTTTATCT
AGAGACTAATCCACGGAGTTTTCTAGAAAGAGCCAAACACGTTGA
Found at i:599345 original size:13 final size:13
Alignment explanation
Indices: 599327--599354 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
599317 GAAAACACCC
599327 TTGAGCCAAGTTT
1 TTGAGCCAAGTTT
599340 TTGAGCCAAGTTT
1 TTGAGCCAAGTTT
599353 TT
1 TT
599355 CCTCTCTCTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.21, C:0.14, G:0.21, T:0.43
Consensus pattern (13 bp):
TTGAGCCAAGTTT
Left flanking sequence: Indices 598827 -- 599326
TCCCGCGAAGGTGAGGCCGCTCAGTCCAAAGCAAGAGGGGCTAACGTGGGCAAGCTGGCTAAACG
AAAAAGTTCCCTGGGATCAGCTCTTTCATATGCTTAACACGAAACCCTTGGGCAAGCCTGAAACA
CGGCAAAAACAGAGGCATAAATATATAGAACCAGATAGAGTTTCCTAGAGGAAGAATATAATGGT
GAATAGGCATTTCACTAAGCATTGTCCTACCGGTTGGATTCGGTCCTCCTTGGCATTTTCTGGTT
GGAAGAATAGTGTTCAGCAAACTCACAGTGAACTGAACTCTTCCTTCCCATTCTACCAATGACGA
AAACCTACAAAAACAGTGTGCATTTTTTCATAGTACGAGAAAGAAGATCTACCGTAGTGTTAGAT
CGACCCTCAGTTCCTGCCGCCGGAAGGCTACGCTCAAGAGCAGCCGGTGGAAGCGAGTATCAACC
ACAGTACCCGATGGAGGAATCTAGGTTTCTATGCTGAAAACACCC
Right flanking sequence: Indices 599355 -- 599854
CCTCTCTCTACTAAAGATATGAATCCATAGGTGAAATAGAGGAATTGCTAGGTCATACTAGGCCC
CCCAGCTGCGGTGCTTTTCCTAACTATATGCAGGGAGGGGGTATTAACCCTGTGCTTTTGCTTCG
ACTCTTCAGTGTGTGCTTGCTGACTTTGTTGAGAGTTGGTACTATTACTTCTCTCTTGTGGAGTC
TACTTTTTGTTAACTCGGATGTTATTGCTTTGTCTTTGCTTCTTGGGCTGAAACTTCTCAAAGCA
TGGAGAAAGAAATGTGGCTCAGGTAACTAAAGAAAGATAGATTCAATGGCGTGGGTTGGGGAAAG
AAAACCATCAAGACTCTCAGGTCAGATGTGTCAAATAGTACGTGGGATGATTCCTGTAAATCGTA
TCATGGCGTGGAAAGCATTCTGAGGCGCGCAGCGGTAAAGTAAACTGCTGGATCTTGCGTTTTTT
TGAGTGAATAAGGAACGCGCATTCGGTCATAGGATAGGGTGCGTT
Found at i:629968 original size:26 final size:25
Alignment explanation
Indices: 629939--629998 Score: 84
Period size: 26 Copynumber: 2.3 Consensus size: 25
629929 ACGTATCAGG
* *
629939 TAGGTAGGACTATTTTGCTTTATAGC
1 TAGGTAGGA-AATTTGGCTTTATAGC
629965 TAGGTAGGGAAATTTGGCTTTATAGC
1 TAGGTA-GGAAATTTGGCTTTATAGC
629991 TAGGTAGG
1 TAGGTAGG
629999 GTGTAATAAC
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
25 2 0.06
26 26 0.84
27 3 0.10
ACGTcount: A:0.25, C:0.08, G:0.30, T:0.37
Consensus pattern (25 bp):
TAGGTAGGAAATTTGGCTTTATAGC
Left flanking sequence: Indices 629439 -- 629938
TTTAGCCTCAAGAGTATACTACTCTTTCAAAAAGGAAAGGCATTTTCGACTCGGGGACACCCAAT
TTCTCTACAACATAAAATTACGCAACAGGAGGGGACAATATAAGATACTGAATAGGTGGCAGGAG
TGGAGTTAAGAAAAGCAAATCTAAGCAAAGTAATATTGTGCTTTTTCGTCTTTCATTTCAAGCGC
TTATGAACTGAACATTGCTTGCCTACTTACGATAGTGCTAGCCAGAAAGGTCAACTCAACTTTCA
TTCGTCTACTTCACTCTTTTAGAAAGTAGGCGGTAATACCTATCTCTGACAATACGGGATGTAAT
ACCTATGTATGACAAGGCGGCGGGGTTGCAATAGTTACCCACTAGGCAGCTAAGTAGTTCACGTA
GGAGAGCAATTCTACTTGTGCGGTTGATACTACTCGTAGAATAAAAAGGACGACAGGAAGGATAT
AAACACAGTAGGCCTATCAGTAGCCAGGAGAGTAAACGTATCAGG
Right flanking sequence: Indices 629999 -- 630498
GTGTAATAACAAGTAGGCCCGACATAAATACAGTAGGCACACAGTAGCGAGACTGTAGGCGAGTA
AGTAAGCTAAGCTAGTATAAAAAGGACAGAGCGCGAAAGAGCTTAAATGACAGAGTGGGCAGAGC
ACCATAGAGCTATAGTAGAAAAACAACCTGCCTAATAGAATAGTACGGTTATCCTGTCAGTAGGC
ATATCAGTAGCTATCGTAGAGAGTAGTAAAACTTCAGAAACTAAAGAGCGGGTATCTAATTAAGT
AAGTAGCAATCTCCCCGGTTCACAAGGTGTATGTAAATGCATTAGTCCTTCCCGAGATCTCTTCT
CTGTACATTGCTTCTTCATGTTCCTATTCAGTAAGCCCAGTCAAGAATTTCTTAGAATTCAGAAA
ACAAGGCTAGATAGATGGCTATTAGCTAACTAGGGTGGCTGGGGACTCCCTCTTTCTTCTGTTAG
ATCCGCTAATCAAAGTTCAAGTTTCTATTTTGTTAACTATGTAAG
Found at i:629999 original size:26 final size:26
Alignment explanation
Indices: 629950--629999 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
629940 AGGTAGGACT
*
629950 ATTTTGCTTTATAGCTAGGTAGGGAA
1 ATTTGGCTTTATAGCTAGGTAGGGAA
629976 ATTTGGCTTTATAGCTAGGTAGGG
1 ATTTGGCTTTATAGCTAGGTAGGG
630000 TGTAATAACA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.24, C:0.08, G:0.30, T:0.38
Consensus pattern (26 bp):
ATTTGGCTTTATAGCTAGGTAGGGAA
Left flanking sequence: Indices 629450 -- 629949
GAGTATACTACTCTTTCAAAAAGGAAAGGCATTTTCGACTCGGGGACACCCAATTTCTCTACAAC
ATAAAATTACGCAACAGGAGGGGACAATATAAGATACTGAATAGGTGGCAGGAGTGGAGTTAAGA
AAAGCAAATCTAAGCAAAGTAATATTGTGCTTTTTCGTCTTTCATTTCAAGCGCTTATGAACTGA
ACATTGCTTGCCTACTTACGATAGTGCTAGCCAGAAAGGTCAACTCAACTTTCATTCGTCTACTT
CACTCTTTTAGAAAGTAGGCGGTAATACCTATCTCTGACAATACGGGATGTAATACCTATGTATG
ACAAGGCGGCGGGGTTGCAATAGTTACCCACTAGGCAGCTAAGTAGTTCACGTAGGAGAGCAATT
CTACTTGTGCGGTTGATACTACTCGTAGAATAAAAAGGACGACAGGAAGGATATAAACACAGTAG
GCCTATCAGTAGCCAGGAGAGTAAACGTATCAGGTAGGTAGGACT
Right flanking sequence: Indices 630000 -- 630499
TGTAATAACAAGTAGGCCCGACATAAATACAGTAGGCACACAGTAGCGAGACTGTAGGCGAGTAA
GTAAGCTAAGCTAGTATAAAAAGGACAGAGCGCGAAAGAGCTTAAATGACAGAGTGGGCAGAGCA
CCATAGAGCTATAGTAGAAAAACAACCTGCCTAATAGAATAGTACGGTTATCCTGTCAGTAGGCA
TATCAGTAGCTATCGTAGAGAGTAGTAAAACTTCAGAAACTAAAGAGCGGGTATCTAATTAAGTA
AGTAGCAATCTCCCCGGTTCACAAGGTGTATGTAAATGCATTAGTCCTTCCCGAGATCTCTTCTC
TGTACATTGCTTCTTCATGTTCCTATTCAGTAAGCCCAGTCAAGAATTTCTTAGAATTCAGAAAA
CAAGGCTAGATAGATGGCTATTAGCTAACTAGGGTGGCTGGGGACTCCCTCTTTCTTCTGTTAGA
TCCGCTAATCAAAGTTCAAGTTTCTATTTTGTTAACTATGTAAGT
Found at i:633889 original size:14 final size:14
Alignment explanation
Indices: 633870--633899 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
633860 GATCTAACTA
633870 TATATGATAATGGT
1 TATATGATAATGGT
633884 TATATGATAATGGT
1 TATATGATAATGGT
633898 TA
1 TA
633900 GAAAAAAAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.37, C:0.00, G:0.20, T:0.43
Consensus pattern (14 bp):
TATATGATAATGGT
Left flanking sequence: Indices 633370 -- 633869
ATTAGAAAAATCTAACATTCCTTGAATTTCTGGTCCTCTCAATAGTTCTGAGAGAAGCCATGTCG
ACGATCTGCGGTGCAGGCTATTATCGGTGGGCGGGTTCCTACTTTAGTAATCATTTTCTGATTTT
TCGGACCTATTTCTTTGAAGAAAGCTTTGATCTTGTTCAGTGTCCCCAACATAGAAAAAAGAAAA
ACACCCATTCCATACTGCACAGAGGCCTTAGCAAGCTGTTAGGTCTTTGAATCACCATACAATAG
AAAAAAAGGGTTTGAGAAGAAAACAGCCGATGCTCTATCAAGACGGGTGGATTGGAACATGGAGA
CGCAAGGGGAAGTGAAGGCCATCACTGTGCTGATACCTAGCTGTGTGCAAGAGGTTTTCAATGGA
ATTCCTAGCACAAGGTAATCCAATGAGGAACTTGACCTTTCTTTTTCTCATTCGAAGTAAAGTAA
AGGAGCAAGAATTGACTTTTTAGAATGAATTGACAGATCTAACTA
Right flanking sequence: Indices 633900 -- 634399
GAAAAAAAAGATAAGCCCAATTCCGCCCACGAATTCTCCTGCTTCGGCCCAAACGAGACTTCTCC
TTCTTCTGGAAAAGCCAATTCTATGAGTCGCTTCCGAAGTGACATTCTTGACGAGTGATAGATAG
GCTTGCTTACGAACGAAGTGGCATTAAGAGTGATAGATAGGCTGGCTGGTTAAGCTTCTTACCTT
AGGATAGGGTAAGTTCTTGCACCAGCATACGCTTTTCTTGCACCTTCTATAGCATAGGGTGTAGG
TTCCACACCGGTGAATGAAAGGAATAGAATAGTAGGAAGAGTTTCACAGTATGCAGCACCCGAGC
TAGTTGAGTGGAATTAATAGAATGCTGGCCCCTCTGTAATTTAGTGAAAATGGCAAAATTCTGTC
TTTTACATAAATAGAATGAAAACAATTCTACTGTTTTTAGAGGTATAGAACTTTAGAATGAAAAT
TTAGGAAGTTTACCTGTTTCATAATTTACTACGGATTTTTTGAGT
Found at i:641437 original size:21 final size:21
Alignment explanation
Indices: 641413--641454 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
641403 TCTTTACGTA
641413 TATATAGAAAGAGGATTCCAG
1 TATATAGAAAGAGGATTCCAG
*
641434 TATATAGAAATAGGATTCCAG
1 TATATAGAAAGAGGATTCCAG
641455 CTCAAGCCCC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.43, C:0.10, G:0.21, T:0.26
Consensus pattern (21 bp):
TATATAGAAAGAGGATTCCAG
Left flanking sequence: Indices 640913 -- 641412
CGGGGAGGTACAAGACAGACTGACTCAAGCGAGTACTTTCTGTGATGAGAGAGGAAAGCTCGACC
AAAGGGAAGCAGTTTGAGTGCGTGGTTTTGACACTTCTTGGAGCTGATTTCTAAGCCATGATCCT
GACAGGTGGGCACTGACCTGGGGAGGGACTTACATAAGAAATTGCATTTGGTAAGCTCTCTACTC
GGTGAATTCAACTCACTAACCTAAAGCGCAAAATTCAGAGTTGAATTGAAAGAAACCCACTTCCA
AAGCCAAATTATTCTAAAGAAGGCTAAAGGTGAGAAATGGAAAACTGAACAGGCGGGTAAGTCAT
TATGCTACAGTAGGCATGTAGCAGTAGGCGGTAGGAGTAGCATTCGACTCCTAGCAAGGGCAATA
CCGAAAGCTAAGCTTGCGTTTCAGCCTGGCCCACAGGAGAGCTTATACCATAGACTCCTGAGAAA
GTAAGGTGTCTGTCGTCAGTCTATAGAGATTCGATTCTTTACGTA
Right flanking sequence: Indices 641455 -- 641954
CTCAAGCCCCTATTGTTTGCTCTTTCTTCATTATCATTCTTTTCTTCCCTTTCCTCTTCTTCATA
TCTGACCCTGATCTTTCGCGAACAAGATGAAGCAGGGCCACCATTACCTTTGACCCTATTCACAG
ATTCTTCTAGCTATTCCCTAGCATCTGTAGAGATTGATTTGTGGTACGAGCAATTTCAGCTTGCC
CCGTCTCTATAAGCTTTTCTTCTTGGTGCGCATTCTTACGCTTTCTCTTCGCATTCTGACACTCT
ATCTTCCTGTAATTAGGAGAGGAGTCCACAGGGACGTATTTCTCCACCCCAGACCAGAGATGCAT
TGCTTTCTGCGCAGCTAATTACCCAGAAATAGCGTATCAGACAAAAGAAAGGAATGGACATGCAA
AGAACGGAATGGACATGCATTGAGTCAATTTATTCTTCTGAGCTTTTGTGGTGCATTTCTTCCGG
CAATCGCACTGGCGAAGACTATTTATCAAATCAATTCATAAAGAG
Found at i:641848 original size:20 final size:20
Alignment explanation
Indices: 641823--641863 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
641813 GTATCAGACA
641823 AAAGAAAGGAATGGACATGC
1 AAAGAAAGGAATGGACATGC
*
641843 AAAGAACGGAATGGACATGC
1 AAAGAAAGGAATGGACATGC
641863 A
1 A
641864 TTGAGTCAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.49, C:0.12, G:0.29, T:0.10
Consensus pattern (20 bp):
AAAGAAAGGAATGGACATGC
Left flanking sequence: Indices 641323 -- 641822
TCAGCCTGGCCCACAGGAGAGCTTATACCATAGACTCCTGAGAAAGTAAGGTGTCTGTCGTCAGT
CTATAGAGATTCGATTCTTTACGTATATATAGAAAGAGGATTCCAGTATATAGAAATAGGATTCC
AGCTCAAGCCCCTATTGTTTGCTCTTTCTTCATTATCATTCTTTTCTTCCCTTTCCTCTTCTTCA
TATCTGACCCTGATCTTTCGCGAACAAGATGAAGCAGGGCCACCATTACCTTTGACCCTATTCAC
AGATTCTTCTAGCTATTCCCTAGCATCTGTAGAGATTGATTTGTGGTACGAGCAATTTCAGCTTG
CCCCGTCTCTATAAGCTTTTCTTCTTGGTGCGCATTCTTACGCTTTCTCTTCGCATTCTGACACT
CTATCTTCCTGTAATTAGGAGAGGAGTCCACAGGGACGTATTTCTCCACCCCAGACCAGAGATGC
ATTGCTTTCTGCGCAGCTAATTACCCAGAAATAGCGTATCAGACA
Right flanking sequence: Indices 641864 -- 642363
TTGAGTCAATTTATTCTTCTGAGCTTTTGTGGTGCATTTCTTCCGGCAATCGCACTGGCGAAGAC
TATTTATCAAATCAATTCATAAAGAGAGAGAATCAGACCCTTTGACTCACTTACTTAGGGCTGAC
TCACTGACTTAGGGGGAGTCCGCACAAGGCTAAACTTGCAAGTTTTCAGCATATATAAAAAGCAT
AAGTCAAGATCGAATCTGAATAATCTAATTAGTAAGGGCGAAGGACGGTGACCGCCTGCCACCAC
ACAACAGTAGAGCTCTTTGGTGCCAACGCTTTCTCAATAAAGGTTACTGTGAAGATTCGCTTCTC
TATACTACACAAGTTGAAAATAGAAAGAAAAAAGTGCTTTCAGTTATTATACTTCTTGATTCTAT
GTAGATGGTAGAATGTAACTGGTAGAGCAATTAAGTCTTTTTAGATATGTAGATGGTAGAGCAAG
AAGTATAAGCCTATTTCAATGAGTGCTACTGGGGCATTCTGGAAA
Found at i:641995 original size:19 final size:19
Alignment explanation
Indices: 641971--642007 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
641961 TCAGACCCTT
*
641971 TGACTCACTTACTTAGGGC
1 TGACTCACTGACTTAGGGC
641990 TGACTCACTGACTTAGGG
1 TGACTCACTGACTTAGGG
642008 GGAGTCCGCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.22, C:0.24, G:0.24, T:0.30
Consensus pattern (19 bp):
TGACTCACTGACTTAGGGC
Left flanking sequence: Indices 641471 -- 641970
TTGCTCTTTCTTCATTATCATTCTTTTCTTCCCTTTCCTCTTCTTCATATCTGACCCTGATCTTT
CGCGAACAAGATGAAGCAGGGCCACCATTACCTTTGACCCTATTCACAGATTCTTCTAGCTATTC
CCTAGCATCTGTAGAGATTGATTTGTGGTACGAGCAATTTCAGCTTGCCCCGTCTCTATAAGCTT
TTCTTCTTGGTGCGCATTCTTACGCTTTCTCTTCGCATTCTGACACTCTATCTTCCTGTAATTAG
GAGAGGAGTCCACAGGGACGTATTTCTCCACCCCAGACCAGAGATGCATTGCTTTCTGCGCAGCT
AATTACCCAGAAATAGCGTATCAGACAAAAGAAAGGAATGGACATGCAAAGAACGGAATGGACAT
GCATTGAGTCAATTTATTCTTCTGAGCTTTTGTGGTGCATTTCTTCCGGCAATCGCACTGGCGAA
GACTATTTATCAAATCAATTCATAAAGAGAGAGAATCAGACCCTT
Right flanking sequence: Indices 642008 -- 642507
GGAGTCCGCACAAGGCTAAACTTGCAAGTTTTCAGCATATATAAAAAGCATAAGTCAAGATCGAA
TCTGAATAATCTAATTAGTAAGGGCGAAGGACGGTGACCGCCTGCCACCACACAACAGTAGAGCT
CTTTGGTGCCAACGCTTTCTCAATAAAGGTTACTGTGAAGATTCGCTTCTCTATACTACACAAGT
TGAAAATAGAAAGAAAAAAGTGCTTTCAGTTATTATACTTCTTGATTCTATGTAGATGGTAGAAT
GTAACTGGTAGAGCAATTAAGTCTTTTTAGATATGTAGATGGTAGAGCAAGAAGTATAAGCCTAT
TTCAATGAGTGCTACTGGGGCATTCTGGAAAGGTTCTCGCGGCAAAACCTAATTGTTATCTATCT
GCTTTCTTCTTTCTCGCAGGCTTCTTTTCTATGAATGAAGCTATAGATTCACTATCTTCTTATTT
GCATTAGACCATTGCAATTACCGTAGGCAAGAGATGGAGTGAAAC
Found at i:691738 original size:24 final size:23
Alignment explanation
Indices: 691686--691748 Score: 72
Period size: 24 Copynumber: 2.7 Consensus size: 23
691676 TCGCAACATT
* *
691686 AGTAGTTGCTCACTGAGTGAAAA
1 AGTAGTTACTCACTGAGTCAAAA
* *
691709 AGGTAGTTCCTCACTGAGTTCAAAG
1 A-GTAGTTACTCACTGAG-TCAAAA
691734 AGTAGTTACTCACTG
1 AGTAGTTACTCACTG
691749 GACGCAGGTC
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
23 1 0.03
24 28 0.82
25 5 0.15
ACGTcount: A:0.30, C:0.17, G:0.24, T:0.29
Consensus pattern (23 bp):
AGTAGTTACTCACTGAGTCAAAA
Left flanking sequence: Indices 691186 -- 691685
CAGTTCGAGTGGACAACTGGGTGGCATTTCACTTTCAAGGTATTTCTCTATTCCATTCTGCGGGT
GGCTTAATCCAATTAAAGCATGAAAACTTATATGCTAAGAAATATCTCCATGAATCCTATATTGC
TTGCATTGTCCTATTTGGTCTACGTAGCCGAACTTAGAAGAATCGAGGCAGCCCCTCCTCTCTCT
CTACAGCCGAAACAGGCGAGTCCTGTCTTCTGTAGAGTGAAGACATGCCTCTCCCTAAACTGACC
CCTACCTACTCACGCTCAATCGGCGCGTGGGCCTATCACACCGGCAATCGCCCGGTGTATCGGCT
ACCATGTCATAAGTGCCTATGGTATAGTATGTGTTTGTTAGGGTAAAGCGGTGAAAGGAGGGGCT
TCTTTGTTCGTAACTACTAATGTTCCTTTTGGAGAGATACACTACGTTCGTGTATCTCTCAAAAG
CGTAACAGACGAGTAACTACTAATGTGTCCTTTGTTCGCAACATT
Right flanking sequence: Indices 691749 -- 692248
GACGCAGGTCTTTTCGAAACTATACGATACCACCAGACGCACCTCTCGTGTCATTGCTCTTCGCC
CTGCTTCTATTTGTCTAGCTGTGATCCGACGCGGGTTCCTGTTTTTGGGGAAGGGATCCCCTACC
TAATATTTTGTATCCGTTGTTCAACCAGGTCAAAAGAAAAGAGTCAGCTGTCGACGGACAAACTT
TGCTAGAACGTCGACCGGTATGGGATGTCCATGCCCCGGGTCCCAGGGTTAGGGTATTCCCTATG
TTGAGCCTACTCAGATAAGAACTGAACTTTTTGATTCTCTTTGGCCTATTGACCGGTTTGAAGCA
ACCTTCGCATTTCCTGCTGAGATCCCGACGTCTCCAAGTGGGCCCTATTGGCCACCCATGACCGT
CGGCTTTTTGGAGAATCCCCTTCCTGTGTCTATGGACTTATAGCTCGGCAGTCCATCGGGTAGGT
TTTTGTCTCCTTCCTTTTTCGAGTGTCTTCTTGGATAGTTATAGC
Found at i:723708 original size:14 final size:14
Alignment explanation
Indices: 723689--723715 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
723679 TAGATCGTTA
723689 TTCATTCCATACTC
1 TTCATTCCATACTC
723703 TTCATTCCATACT
1 TTCATTCCATACT
723716 ATAGTGAAAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.22, C:0.33, G:0.00, T:0.44
Consensus pattern (14 bp):
TTCATTCCATACTC
Left flanking sequence: Indices 723189 -- 723688
TCAAAGTAATTACTTTCAAGTATACTATGATAAGAAGAGCCATATGGATACTGTCTATCATGAGG
TACTATTAGATGATGAGGTAGAAGAGCGTGTTAACGCTGATCTCTCTATATTTGAGAAGGGGGAA
GGACTCAAAATCCACTTTAACTTGATCATCGAATGAAACTTTAGGTTCTAAGAAGAATGTAGAAT
CTAAGTATGTGGATAAATCACTTATCAAGAAGATAGTTGCAAGCGGTACATTGAAGGAGAAGCAA
GCGTTCTTTGTGGCAGATATAGAAACTTTTCTGAATGATAATGAAAAAAGTCCCTTATGCTATTG
GAATTATACAGGTTGAACCCGAATCAGTATCCACCAGTGAGGAAAGAGCTTCGTGGTATAGCCAA
GATTCTTTTAATATGGGTAGCTTTCCTGAGAGGAATGCGAAAATGATGAGTACTTGGGGAGTCCT
TAGGAGTTTAGTACAAGGGACTCTAATAAAAAAGATAGATCGTTA
Right flanking sequence: Indices 723716 -- 724215
ATAGTGAAAGACTCGGAGTATGTCCACGGCGGGCGCGGAAGAGTAGGATATTCAATCGCCTAAAA
GAAGTAGTCTCAATACATGGGCCTCAAACCCCTCCCTTAAATGAAACACTGTTTAGTAAAACACT
GAAATATCTAATTGCTGGGCCAGTGTTCAACTTGACACATACGGAACTAACAACGTTGAATGCCC
CTTTTCGTTCTACACATTAGTAGTTACTCACTGAGTGAAAAGGATAGTTACGAGCCCAAAAGCGA
GAGAATGCCATCCATACTTGTTTACTGAGGAATTTGATGAATCCGCATATGTGTTTATGCCCCGG
AAGAATTACTTTATATTGCTGGTGGCTGGCTGAGTGGAGAAAAAGTGAACCATGCACGATTGATT
CATTGCTACGTCCAAGGAAGGAAGCGATTTTATGAAAGGTTGCACGCGCATGTCTGAGAAACTGT
CAGAAATTCCAACTATTTGTTTATTCTCTTGACTAATGGATTACT
Found at i:733961 original size:44 final size:45
Alignment explanation
Indices: 733898--733984 Score: 140
Period size: 44 Copynumber: 2.0 Consensus size: 45
733888 TTAGCTGGTC
* *
733898 CAGAAAGGTTCATTTCCAGAGGGAAGGTTGTCTCTG-TTCCAGAA
1 CAGAAAGGTTCATTTCCAGAGGGAAGGATGTCTCCGTTTCCAGAA
*
733942 CAGAAAGGTTCATTTCCAGAGGGGAGGATGTCTCCGTTTCCAG
1 CAGAAAGGTTCATTTCCAGAGGGAAGGATGTCTCCGTTTCCAG
733985 CTTTTGAGCT
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
44 33 0.85
45 6 0.15
ACGTcount: A:0.25, C:0.20, G:0.29, T:0.26
Consensus pattern (45 bp):
CAGAAAGGTTCATTTCCAGAGGGAAGGATGTCTCCGTTTCCAGAA
Left flanking sequence: Indices 733398 -- 733897
TCCCCTGGGCATAAAGCCGGAGAAACATCTCGTCTTTCGGTTGGGACACACACTGTTAAGAGCCC
ACCTCCTCCGCCAGGTTTGGACCTGTGCTCGTACAAGACTGCTGGCTGGATTGCCGTTCTCCTTC
CCGTTCGGCGAGGCCCCATCCCTTATGTTGATATCGGGTCCATACCCCAACTCCTATTTCTATGT
TATGAACCTTGTCATTATGAAGGCTATGCCTTCTTACGCGTAACCCAACCTTGTATTCCACATCC
ATCCAACCCACCACCCAACCAATGATAGGGGTTATCCTTTTTGATAAACGACGATACTGAACCGA
GGCAGATACAGCTCTATTCGTTATTGTTCCAATCCGCATCTGTTTCTGCTTGGGACACATAAACA
TGAAAAAGTGTTGTCTAGAGCCGCGGGGAGGCAACCAAGGTATGAAATAGGGATCTGGTTATATG
CTCTGACTAAACTCTCCCTTAACCATGCATGGGCTTTAGCTGGTC
Right flanking sequence: Indices 733985 -- 734484
CTTTTGAGCTTGGCTTGAGGAAAATAGGTTTCTACCATGGATCTCCGTCTCTGTGAAGAACGCAA
GAAAAGAGAATTATAGAGATGATGGGAAGATCAAGTCAAGGATAAGGGTCATCTATTCCATTAAG
TAGTAGAGGAAGAGAGATAGGATGTATCGAGGCGAGGGATAGCTTGGTTCATTAGTCTGGGTTTG
ATCTTCTTTTTGTGAAGGATCGAGGCTGTATTTCGAACCTTGTCTAAGGGATCTCTGTATGCGGG
CACATATCTACTCGACTCTTTTATTTCCCTACCCCATTCCAAGTTCTTTGCTTGAGCTTGAAGGG
ATAGTACTTATGCCTGCCTTATTAGACTACTTGACTCGCCATCTCCATATCATAGCTTAGGTTCT
TTCCTTGCTTCATAGGTTTCCGGGCTAACTTATCCTTGGCTTGCTTTCATCACTAACAGTCTTCC
GTTCCGAGGAATACTCTCTTTGGGAAAGAGAGGATTACTCTTAGA
Found at i:734694 original size:24 final size:24
Alignment explanation
Indices: 734662--734720 Score: 100
Period size: 24 Copynumber: 2.5 Consensus size: 24
734652 AGCTTGTGGG
*
734662 AAGGAGAAGGAGACGCATTAGCAT
1 AAGGAGAAGCAGACGCATTAGCAT
*
734686 AAGGAGAAGCAGACTCATTAGCAT
1 AAGGAGAAGCAGACGCATTAGCAT
734710 AAGGAGAAGCA
1 AAGGAGAAGCA
734721 TGTGGACAAG
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 33 1.00
ACGTcount: A:0.44, C:0.14, G:0.31, T:0.12
Consensus pattern (24 bp):
AAGGAGAAGCAGACGCATTAGCAT
Left flanking sequence: Indices 734162 -- 734661
TTCATTAGTCTGGGTTTGATCTTCTTTTTGTGAAGGATCGAGGCTGTATTTCGAACCTTGTCTAA
GGGATCTCTGTATGCGGGCACATATCTACTCGACTCTTTTATTTCCCTACCCCATTCCAAGTTCT
TTGCTTGAGCTTGAAGGGATAGTACTTATGCCTGCCTTATTAGACTACTTGACTCGCCATCTCCA
TATCATAGCTTAGGTTCTTTCCTTGCTTCATAGGTTTCCGGGCTAACTTATCCTTGGCTTGCTTT
CATCACTAACAGTCTTCCGTTCCGAGGAATACTCTCTTTGGGAAAGAGAGGATTACTCTTAGACT
ACTTACTTATTCTTATTTGAGATTATGCTTCCCCTATTCTTCTTGGAAATAAGAAGATGTATTTT
CAATTGATATGTTTCCAGGCTCAAGGTCTACTGTTTCATAGGTTACCATTCCTGGATTGATCTCT
ATTTCATACCAAGTCCAGAAGGAGAAGGAGAAGCTAGCTTGTGGG
Right flanking sequence: Indices 734721 -- 735220
TGTGGACAAGGCACGGCACCAAACCAATGGGAGGAACGGGTATCTATAGTGATAGTGATAATGAA
AGGGAAGGGGCTTGGTGGATAGGAAAGAGCTGGTATAGCAAGTCAAGGGAATAGTTCGATATCTT
GAATGCATGCTTATGTTTGATACTGCAGATGGGTGTGCCAGAGTAGAAATAGGAATAGGATTAGG
CCTAGTATTTGTCAAAGATTTCTTGGCAAGAGAGTCTAGCGTAGCTCTTTGAGCATTCCCATAAG
CCCTTTCTGGGGTTTAATCAAAAGCATCCATGCCAGGGCGTAGAGGACGCATCTTTTGAACCAAA
AGCAAAGAAAGTCCCCTTGACTGAGAGCGCCAAAAGGGTCAACGGCTGTAAAGAAGATAGACGTG
CGGGACCCCCTTCTCAACTTCATGCTTGAATTCATGTGTACGTCCTTCTGTTTGTGAAAACCCGA
CCCCTGTTTCTTCCTCTTTCTCCTGGCGAAATAGCAGCTCCTTCT
Found at i:750361 original size:31 final size:31
Alignment explanation
Indices: 750323--750382 Score: 102
Period size: 31 Copynumber: 1.9 Consensus size: 31
750313 TTCACCCAGC
*
750323 GAGTAACTACTAATGTTACGAGTGAAAAGGT
1 GAGTAACTACTAATGTTACGAGCGAAAAGGT
*
750354 GAGTAACTACTAATGTTGCGAGCGAAAAG
1 GAGTAACTACTAATGTTACGAGCGAAAAG
750383 AGCTAGTAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.38, C:0.12, G:0.27, T:0.23
Consensus pattern (31 bp):
GAGTAACTACTAATGTTACGAGCGAAAAGGT
Left flanking sequence: Indices 749823 -- 750322
TCTCGTACTGTCAGTCAACCAACATAAGTAGTCTATACAATAATATCTTCCCGTGAACTAAGATC
CCACAGCTTTTTAATAAGCACCTGAGTTTTCTTTATCTTTCCTATCAATTTTTTATTCACATTTG
TAAAGCATATCAATGTAGTATTTCCAGTTCTCAGAGTGCTTTTTCCACCTTGTCATTTTTCTTTT
TTTAAGAAAGGACATGCGAGATGTAGCACCAGCACAAGAGGTATGAGACTTGAGTGAGACGAGGA
CACTTAATTTAGCTTGCAATATGGGCCCACCCAGTCTACGGGCTTTGGTGGAATCTCATCTCTTT
CTTCTTCTTTCCCCAATCGACTGCCTAAGTCTAAGTCAAGTACGGAATAAGCTGTGGTCCATTTC
CCGAAGTAGGCACCAAGCAAGGGAAGAGAAGAGAGTTACCGACTTTCCTGGAGTGAGTAAGATCA
TTCAGATATACCGGATTGCTCCCCTTCTTGTATGTTTCACCCAGC
Right flanking sequence: Indices 750383 -- 750882
AGCTAGTAATGACAGATGTAGTAGGATCAAAAGCTATTAAAGCTATTGGGAAAACATCCGGTGAG
GCATGGAAATTCACTAAAATCTACCAGACTGATGTTCCTCACGTACTGCTTGATAGAAGCTTACC
CAAGGTAGCTCCAGCCTCCTCAATCTTCTGAACCAAAGGGTGTGTTCCGCTTACAGATTACCTTA
TCCGTTTGTGTATGAGTTCCCAAGTCAAGTAGCAAGTTCCCGACTTACTTGAGTTTAGTAGATGC
ATGCACACGGACGGGTCCTGCACTCCGGGTTGATAAAGAAAGATCTACTGACTTTTGACTTTCAA
TGCTTTTGAGAATCTCCTCCGTCTAACGTAAATAGGGCCATACGTAAACAATTCTACCTATCATC
TATCTTCGTTCGGGCCGGACTAATTCCGAAAAGAATCTTCGTATGGGATCCTTTTCTAAGCCCTC
TCCCAATGAACACAGAGGCCGAGCTCCATTCATGAAAGGCAGGGG
Found at i:753311 original size:20 final size:21
Alignment explanation
Indices: 753273--753313 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
753263 GGAAAACTGG
753273 TAGCTAGGAAAGCAGGTAGCT
1 TAGCTAGGAAAGCAGGTAGCT
*
753294 TAGCTAGGAAA-TAGGTAGCT
1 TAGCTAGGAAAGCAGGTAGCT
753314 AGGAAATAGT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 8 0.42
21 11 0.58
ACGTcount: A:0.34, C:0.12, G:0.32, T:0.22
Consensus pattern (21 bp):
TAGCTAGGAAAGCAGGTAGCT
Left flanking sequence: Indices 752773 -- 753272
TTTCTTTACCACCAAGCCGAAGAGTTTGAATCCGCGAGCCCCGAAACCCCTGGTATATGAGAGAG
CAGAGTTACAGGAGGGAGCTCCACTAGTGAAGTAGTATTTTCCTGGATATGAGTTTGTCCCAGCC
CTTTCCCCCGAGACAGCGAGTTTAACAGATGCGGAAGGAAAAGCTGAAAAGTGTCAAGTAAGAAA
AAGTAAGGCAAAGCTTTAAAGCAAAGTTGGACGAAGAGGCAAAAAGCGGAAAAAGCGGATAGATA
CGAAGGGCAAGTCGAAGACAAATCACTACACACATAGAGAAAGAGAGTCTAAAGTCGGACGAACC
TAGAGCTGAGTGTCGACGTTTCAAAGATAGGAAAAGCACGAGTCCCAAGAGCAAGAAAGTAGGCC
CTGCCCTAATAGTAAAAAGCTCAAAAAGTTTCTTGAGAAGAGCTGATATGCTTCATTAAGCTCTC
AGGGACTGTTTGCTCGCGTAATTCACTTTATGGTAGGAAAACTGG
Right flanking sequence: Indices 753314 -- 753813
AGGAAATAGTTACCTCTCTTTTTAGGAACTCTCCTAACCTGATCCCTCTCAGAACCAGATCCCTC
ATCCGTAAGAAAAAACAATCAAACCAATCCACCCACTCTTTCATCATCTTGACCCAGTGAGTAAC
TACTAATGTTACGAACGAAGACTCTTTCAGCATCTTTGCAGCCCGGAGACAGGAATCCTCGGAAG
GAAGAAAGGAATCCTTGGAAGCGTAGACAGGGGCAGACAGACAGAAGCGAGCGAGGTATTTGGCG
ATTCAAAGGCGAAACAATTGAGAAAAAGAAAGAGCCAAAAGAGCGAGCCTTTTGCTTTGGCTTTC
TTCCTATCTCTCTGCTTTTGCTTTCCAGCGCGCGCCAATTCCCTGCTTTTGAGGAGGAAGTAGCA
TGCTCCGACTGTATACTATGTATAAGATCTGAACTAGAAAATCTTGCAAGCACAATCCGGGAGTA
AGGAAGGCTTTCAGGCCCTCGCTCTTGCAGCTAGTGAAGTTGAAG
Found at i:753314 original size:15 final size:15
Alignment explanation
Indices: 753294--753322 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
753284 GCAGGTAGCT
753294 TAGCTAGGAAATAGG
1 TAGCTAGGAAATAGG
753309 TAGCTAGGAAATAG
1 TAGCTAGGAAATAG
753323 TTACCTCTCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.41, C:0.07, G:0.31, T:0.21
Consensus pattern (15 bp):
TAGCTAGGAAATAGG
Left flanking sequence: Indices 752794 -- 753293
GAGTTTGAATCCGCGAGCCCCGAAACCCCTGGTATATGAGAGAGCAGAGTTACAGGAGGGAGCTC
CACTAGTGAAGTAGTATTTTCCTGGATATGAGTTTGTCCCAGCCCTTTCCCCCGAGACAGCGAGT
TTAACAGATGCGGAAGGAAAAGCTGAAAAGTGTCAAGTAAGAAAAAGTAAGGCAAAGCTTTAAAG
CAAAGTTGGACGAAGAGGCAAAAAGCGGAAAAAGCGGATAGATACGAAGGGCAAGTCGAAGACAA
ATCACTACACACATAGAGAAAGAGAGTCTAAAGTCGGACGAACCTAGAGCTGAGTGTCGACGTTT
CAAAGATAGGAAAAGCACGAGTCCCAAGAGCAAGAAAGTAGGCCCTGCCCTAATAGTAAAAAGCT
CAAAAAGTTTCTTGAGAAGAGCTGATATGCTTCATTAAGCTCTCAGGGACTGTTTGCTCGCGTAA
TTCACTTTATGGTAGGAAAACTGGTAGCTAGGAAAGCAGGTAGCT
Right flanking sequence: Indices 753323 -- 753822
TTACCTCTCTTTTTAGGAACTCTCCTAACCTGATCCCTCTCAGAACCAGATCCCTCATCCGTAAG
AAAAAACAATCAAACCAATCCACCCACTCTTTCATCATCTTGACCCAGTGAGTAACTACTAATGT
TACGAACGAAGACTCTTTCAGCATCTTTGCAGCCCGGAGACAGGAATCCTCGGAAGGAAGAAAGG
AATCCTTGGAAGCGTAGACAGGGGCAGACAGACAGAAGCGAGCGAGGTATTTGGCGATTCAAAGG
CGAAACAATTGAGAAAAAGAAAGAGCCAAAAGAGCGAGCCTTTTGCTTTGGCTTTCTTCCTATCT
CTCTGCTTTTGCTTTCCAGCGCGCGCCAATTCCCTGCTTTTGAGGAGGAAGTAGCATGCTCCGAC
TGTATACTATGTATAAGATCTGAACTAGAAAATCTTGCAAGCACAATCCGGGAGTAAGGAAGGCT
TTCAGGCCCTCGCTCTTGCAGCTAGTGAAGTTGAAGTGCTTCTCT
Found at i:760287 original size:13 final size:13
Alignment explanation
Indices: 760269--760294 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
760259 AATATTCTAT
760269 TATAAGATAGATC
1 TATAAGATAGATC
760282 TATAAGATAGATC
1 TATAAGATAGATC
760295 AGGTCTTCTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.08, G:0.15, T:0.31
Consensus pattern (13 bp):
TATAAGATAGATC
Left flanking sequence: Indices 759769 -- 760268
CTTTGACAACAGGTATTTAGACTTCTGGGGTTAGGTGAGCAGTGGCCCCCTAGATGGTATTTCCC
AGCAGCACTGTTTACACTTATGCTACTGAGCATTGCACAACTTCTAAAGTCAATTAGAATTTCTA
GTTGAAACACAACCATATAAGATAATTCTTATCTGAGATTTAATATAGAAGCAAGCAAAAGGATG
AATGCAATTCGGGATGAAGAAGTTTGCAATAACTCCCTGAGAATAGTTCTGCTTTCTCGCGGGGC
ACAGAGCGAGGGGTAAGTTGGCTTGTTATATATAGGTAATTCCTGGCTAGGCTAATTGAAAGAGC
AAAGCTTGGGCGCGAAGCCTCGCTTATTTCAAAGGGATGCTTAGTATAGTCCAGTAAGGCTTCTG
CAAAAGAAGAGATTGAAGCCTTATAACAGAGAAAATTCTTCTCTTTGAACTCTTTTTTCATTACT
TGTCAAAGTCCACTGTGCTTAGTCTACCTCAGAAAAATATTCTAT
Right flanking sequence: Indices 760295 -- 760794
AGGTCTTCTTCTCGCTTTGAAATAAATGGAATGGTAGATGAGGAGCAAGCTGGCTATAAATGGCA
GATTAGGATCAGGCTGGCCTCATAGAGAGTAGAGCTAATAAAGAAAAGGAATGAGCTCTGACTTA
TTAGTTCAATCAATCCCAGGCTGAAGTTAGTTAGAAGAAAGGCCAAGTCATCCGTTGCTTATACC
ACTATGCCCAGTAGAAAAGTGAGGACTTATTGTCCGCTACCAAGAAATGAGATTAACACCTCCTG
ACTATTTATTTAGTAAAGAATAAAACCTCTAACCTATTATAATGCTTGACTGGCTAGTGAGTTTT
CATCCGCATATGCTTGAGAGTCAGGAGCTCGCTAATAAAGCTTTTGTTTGTTAACTAGTCTCAAG
CGTTGCATTCTATGCTTTCTTTTGCTCGTAACGTTAGTAGTTACTCGCTGGGCGTAGCTTGCTTG
TGATGATTAGTTCATCAAGTCGGAAAGGTAGCTTGGCAAGGAGAA
Found at i:786365 original size:20 final size:20
Alignment explanation
Indices: 786342--786384 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
786332 TTTTCCTTGT
786342 TTTAGTTGTT-GTTAGAGATG
1 TTTAGTTGTTAGTT-GAGATG
* *
786362 TTTATTTGTTAGTTGAGTTG
1 TTTAGTTGTTAGTTGAGATG
786382 TTT
1 TTT
786385 TCTTTTCCTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 17 0.85
21 3 0.15
ACGTcount: A:0.16, C:0.00, G:0.26, T:0.58
Consensus pattern (20 bp):
TTTAGTTGTTAGTTGAGATG
Left flanking sequence: Indices 785842 -- 786341
CGTAGAGAGAAAGAGCCATGCTCGTCAAATTAGTATGGAAAAAGGACTTGATTTCCTACGCTGTG
TCATCTGAAAATTGAGACTGACATGCGCCAGGGAACTGACTCAAGAAACGGATCCATGTCTCTAC
AATTGAGTAATACTACATATTTCTTGTGCGACCGCTATTTCTTGTTGGGTAAGATCTGGAACGTA
TGGAACCGTCACCCTTGGAATGGCTGAAAGCGCACGTATATGAGTTGAAACTCTTTGGTTGTGAT
GCGTCTTATATCAACCCCTGGCCTCGGTTGAGTCTATAAAAGGAATAGCTAGACTCAACCAAGCA
TGGCACCGCCCCCGTGGAATGTATCCCACCGGATCCCTCGCTCTCACAGAACAAGGAGATAAGAG
CACAAGGTCCGACGTGAAACATTGATTTCGATGCGCCATTTACGATATTTCTCGTTATTGGTTTG
GTTGATTTTCCTTGTTATGGTTTTTGTTGCTTGTTTTTTCCTTGT
Right flanking sequence: Indices 786385 -- 786884
TCTTTTCCTTTCTTTCCTTTGGTGCAATGCAGGCTGGGAAGAAACGTTTTGAAACGTCACGTGTA
TCGTCGTGCCTTGGAAGAGCTTTTCGTTTCCTTACCCAACCAAAGCTGCGCAAGATAAAAGAGAA
AAAGCAAAGGGGGACCAAATGATGAATAGACAACGACTAGTAGGCGCCCTCTTCTTGACTTTCGA
AAACTTGCAGCGAAGAAAGAGGAAGGCGCAGTACTGCACAGGGAAGGACTATCAGAGTATAGCTT
CAATGAAGTAAGTAGCCCGCCTAAGGAGCAGCTCTGGACCAGTACTCCCTCTGCTCTGGCCCAGG
GGCAAGAAGCTTGAAAGTAGGCAAGCAAAGTTCAGTTCATAAGCGGTTGAAATGAAATGAAAGAC
GAGAAAAAACAATATGAGTTTATGAGATTCCCTTTTCTTAACTCCACTCCAGCCACGAATCACGG
TAATAAGCCTTGTAAGCTTCTACGAGAGTTTTGACTTGGTTATTC
Found at i:799109 original size:24 final size:24
Alignment explanation
Indices: 799077--799173 Score: 151
Period size: 24 Copynumber: 4.0 Consensus size: 24
799067 CTAATGTTAC
799077 GAGTTCAAAAGGTAGTTACTCACT
1 GAGTTCAAAAGGTAGTTACTCACT
799101 GAGTTCAAAAGGTAGTTACTCACT
1 GAGTTCAAAAGGTAGTTACTCACT
* *
799125 GAGTTCAAAGGGTAGTTCCTCACT
1 GAGTTCAAAAGGTAGTTACTCACT
*
799149 GAG-TGAAAAGAGTAGTTACTCACT
1 GAGTTCAAAAG-GTAGTTACTCACT
799173 G
1 G
799174 GGCAAAGGAT
Statistics
Matches: 67, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
23 5 0.07
24 62 0.93
ACGTcount: A:0.32, C:0.16, G:0.24, T:0.28
Consensus pattern (24 bp):
GAGTTCAAAAGGTAGTTACTCACT
Left flanking sequence: Indices 798577 -- 799076
TTCGACCGTGTCTCCGGGGCACAGTTGAATGTAGATATCATGAACGCGAGGTGCCGGATACCAGG
CCGAGAAACCCGCGGGCAAATACTCCCCTTATGTGCCGATCACTAGCGCATCCCGGGTCCCGGCG
CCCAGCTCTGCTGGAGATGCCGTCACTGATCTCGTCTTCGGCCGCGTCCATAAAAAAACAAGTGC
TCCGCAGATCAGTGAAGAACCCGCAAGAAGATACCTCGGCGCCCGCCGCACTATGCTCCGCAACC
AAATGAGAGTTTTTCGGTGGAACCGGTGAACCGCGTGAGCTGCTTAGATGCGTGGGACAGAGGGC
TCGTAGTACCTGATAGCGCAGCGGAAGGAGCCTAAATCAACCATTAAAAGAGAAAAAAGCACAGG
GGCTCTCGGATGAGACTAAGCAGCTACCATTCAGACCGAAGGGACTTGACTTATCCGAACCACGG
CAGCCGGCTTTTCGTTCGTAACAGACGAGTAACTACTAATGTTAC
Right flanking sequence: Indices 799174 -- 799673
GGCAAAGGATCAAGCGCTTTGACTTTTTCCCCTGGTTGGGTTTGAGAGCCGTGTGATGGGTAACT
ATCCAGCACGGTTCGGGGAGCACTTGTATGTAGTCTGCGCTGGTGAATGGAAGCCCGCAAAAAAG
AAGCGGCTCAAACTGCGGCTCTGCCACCATTGACTCTATTTATTATTATGGTAAATCTGTGTATC
AAGATGTCAATCTGAGATCTTATTTTGGGTCGATACGTCCACTAACGAGACTCACCTTTGGCTTT
CGTCTCGGTAGGTGTATTATTATACATTTTCCCAAAATGACATTGATTCATTTCTTTCTTCCCCG
TCAACCACGGAAACGAAAACGACGCGACAAATCAAGACCCGTAAGGGCGAAGGCCAAATGGTGGG
CATTTGGGAAGGTCGAGCGGGTGTCCTCATTCCAGGGTAAAGAGGAAGAACGAAGGGAAGTGGGA
GGCCGGGCGGCAGGGAAAAGAGTCGAGTCGATCAGGCTCGACGAC
Found at i:799835 original size:18 final size:18
Alignment explanation
Indices: 799812--799846 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
799802 CGAGGTTGGC
799812 AATGACATAGCCTCCCTG
1 AATGACATAGCCTCCCTG
*
799830 AATGACATGGCCTCCCT
1 AATGACATAGCCTCCCT
799847 TTTCGACAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.26, C:0.34, G:0.17, T:0.23
Consensus pattern (18 bp):
AATGACATAGCCTCCCTG
Left flanking sequence: Indices 799312 -- 799811
CAAACTGCGGCTCTGCCACCATTGACTCTATTTATTATTATGGTAAATCTGTGTATCAAGATGTC
AATCTGAGATCTTATTTTGGGTCGATACGTCCACTAACGAGACTCACCTTTGGCTTTCGTCTCGG
TAGGTGTATTATTATACATTTTCCCAAAATGACATTGATTCATTTCTTTCTTCCCCGTCAACCAC
GGAAACGAAAACGACGCGACAAATCAAGACCCGTAAGGGCGAAGGCCAAATGGTGGGCATTTGGG
AAGGTCGAGCGGGTGTCCTCATTCCAGGGTAAAGAGGAAGAACGAAGGGAAGTGGGAGGCCGGGC
GGCAGGGAAAAGAGTCGAGTCGATCAGGCTCGACGACCGGAGGAAGCAAAACGAAATAAGGATTT
GGCCGAAAAAGATGCAACGCTATGGATACCATGACCGATCTTCATCGATAACGACTAAATCACTT
CGGGTCAGCAAGGCCCGCAAGCGTTCTACATACGCCGAGGTTGGC
Right flanking sequence: Indices 799847 -- 800346
TTTCGACAAAACATTGAAAGACCACTCCTCTTTGGTCTTAAGGTTCTTAATAGCAAGGGCGTCCC
GCTCTTACGGCCCGACGAGTCATCTACTAAAAAGGACCCTCCGCGCATCGCGTCCCTCCTTGAAA
TATTTGGTAATGCAATACTTATTGAATACAAAGAAAAAAATGCATTTTGACCCCGTCCACGTTCT
CAATCATTTCGTGGCATCGGGTGTAGCTGAACCTGGAGGAGCGAAGGAAAAAAGCTTAGATAAGA
GAATACGCTCTCGCATCGCTTTTTTTGTAGAAAGCTCAACCAGCGAGAAAAAGTGTTTGGCTCAA
GCCAAAAAGAGGTTGATCCACTTCATTCGCTTGGCCAATGATCTTCGCTTCGCGGGAACAAGAAA
AACTAGCATCTCGCTCTTTCCTTTCTTCGGTGCCCTCTATTTCTTTCTAAAGGGTGCGCCTGGGG
TGTATAAGACCCTACGGTTGGAGTCTGCCCGGGAACAACTCCTAG
Found at i:804493 original size:18 final size:18
Alignment explanation
Indices: 804463--804521 Score: 50
Period size: 18 Copynumber: 3.3 Consensus size: 18
804453 ACCTGCAAGA
*
804463 GCAA-GAACCCAATGCTG
1 GCAACGAACACAATGCTG
* *
804480 GTAACGAACACAATGACCG
1 GCAACGAACACAATG-CTG
*
804499 GCAA-GAACTCAATGCTG
1 GCAACGAACACAATGCTG
*
804516 GGAACG
1 GCAACG
804522 GGACCATGAG
Statistics
Matches: 32, Mismatches: 7, Indels: 5
0.73 0.16 0.11
Matches are distributed among these distances:
17 8 0.25
18 19 0.59
19 5 0.16
ACGTcount: A:0.37, C:0.25, G:0.25, T:0.12
Consensus pattern (18 bp):
GCAACGAACACAATGCTG
Left flanking sequence: Indices 803963 -- 804462
CCGATGGTGTGTGATGATAGGTTGTAACCCGACAAAAAAGAAGGTATGTTAAGCTCTAGTATAGA
TGATGTCATACTCGATCTTATGTTTAAGCTCTTTATTCTTCAAAAACCAGAAATTAGCCCACTTC
AAGATAGGGCAGGTAGGCTTTCTCTATACAAATATAGCCTCACACTGTATGTAAATAGAACCCAC
TTTCTTTGTTTTTGTATTTTTCATCTTGTTTAGTCGTTCTTCTTCCCCCCTCGCTCGTATATGTA
TTTCTATATGGGGGGAGTTGCATCTTATCTTTCGGGTCGCAATAAGATAGTGGTAGGGGCCTCTG
TTGCGATGCGGGTCATTCTCGTCTTGCTTGTTGGGTTCACATCCATACTCGCCCAGGCTTTCTGA
CCTGGTCAGACGTAACCTGCAGTCTTTTGTTGTGCTACACTTTGATCCTAGTGAGTAACTACTAA
TGTGTAGAACGAAAAGCCCAACTCATTGATCCCAGACCTGCAAGA
Right flanking sequence: Indices 804522 -- 805021
GGACCATGAGCCACTAACCTGGATGCTCAACCAGCAGAAACAACATGAGCTTTCCTATCAATTAT
TCTCTAGCTGATAGAAATTCTCCTTCAAGTCAGTATATATTTGGTTCAGCACCAATGTAGGCGGG
GCGAGCAAATAGATTTACGCACACTACTACCTATTGGTCGGCTCACTCTTGTAGTTCGCTGGCTC
GTTTCATTCAACCACTCTAAAGGCTCACTCATACCTAAAGCTGGCTCGTTCCATCCTTACACTCG
CTTGGCTCACTCTTTCCGCGAAACCTACTTAGTTCAATTTTCTATTTCTTCTCGTAAGCTGTTGT
TGTTTGAGAAGTCTATTGTGGAGGAGAAGCCAAGCTATACAAAGAATTTCGCACACAGGGGTGCC
TTTTCGTTCGTAACTACTCTTTGAACTCAGTGAGGAATAAGTAAGTCAAGTAGAAGAAAGCAAAC
TGATGCGCTAACAAAGTAGAAAAAATATGAAAAAAAAGTCAATAT
Found at i:822711 original size:24 final size:24
Alignment explanation
Indices: 822683--822744 Score: 97
Period size: 24 Copynumber: 2.6 Consensus size: 24
822673 GTTTGATTCC
822683 CAGTGAGTAACTACCTTTTGAACT
1 CAGTGAGTAACTACCTTTTGAACT
**
822707 CAGTGAGTAACTACCTTTTTCACT
1 CAGTGAGTAACTACCTTTTGAACT
*
822731 CAGTGAGCAACTAC
1 CAGTGAGTAACTAC
822745 TAATGTTGCG
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 35 1.00
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.31
Consensus pattern (24 bp):
CAGTGAGTAACTACCTTTTGAACT
Left flanking sequence: Indices 822183 -- 822682
CTTTAGCCCTGCTTAAGGAGGAATGTTAACGAGGTATTTGAACCCGGGTAACGTTGCTCTACCCT
TGATGGGATAGTCAAATCCTTAAAAGGGGGAATCGCACTTATCCCCCGTCTTTTTTGATTTCGCG
CTTGGGTGCTATCACATGTGAAGAAAAATCGTAGATAGAGATGTTTTTTTCTCTGAGTTTATCTG
AGTGTATCTGCTTCGGTATTTGGTCGACGGTGATGTCGCCCCGAAAACTAGTTCCAACCGATAGG
TTGAGATCTATATATGTGGTTAGACAAGCGATAACTGTTAAAAGAAGCAAGGACTCCAATCCCTT
ATTTTACCAGTGCAGGTTAAGGCAACAGGTACCGTTGTCAAAGGAGTTGGTTCTGATCCCCTTAT
CATGGCTCCTGCTCTCCAGTACCTCAACCCAGGGAACTGCAGGGAAGCACGAAGTTTGACCCTCA
TTGCTGCCAAGGAAGGGCTCGCTAAACGAACAGGAGTTTGATTCC
Right flanking sequence: Indices 822745 -- 823244
TAATGTTGCGAACAAAGGACACATTAGTAGTTACTCGTCTGTTACGCTTTTGAGAGATACACGAA
CGTAGTGTATCTCTCCAAAAGGAACATGCCGTAGTGTATCGTCTGTTACGCTTTTGAGAGATACA
CGAACGTAGTGTATCTCTCCAAAAGAAGTAGTAGTTACTCGTCTGTGTAGAACAAAGAACCTGAA
CTCGAGGACAGCTTTCTTATAGTACGGCTGCGCCTTGACCCAGAGTGCTCGTTTCAAATAAATGA
CTAGAAGTTTGTTTATCCACTATAGGAAGTAGTAGTCGTTTCGCAAGTAGTCTTCTTACCAGCTA
GCAAGGAAGTAAGCGAGCTTGTAGTCTCATGTGTTTGAGGCTGGCCAGCTAGGAGTTTGATTGAT
GCTGTTAATTCTTCTTACGCAGTACCACGGGATATCAGGTTAGAAGTGCGCCAGATAGAATTTCA
GTTCCAGACGTAAGATGAAAAGCCGTGATTCTAGCTGTCCTATCA
Found at i:822869 original size:69 final size:69
Alignment explanation
Indices: 822771--822899 Score: 242
Period size: 69 Copynumber: 1.9 Consensus size: 69
822761 GGACACATTA
822771 GTAGTTACTCGTCTGTTACGCTTTTGAGAGATACACGAACGTAGTGTATCTCTCCAAAAGGAACA
1 GTAGTTACTCGTCTGTTACGCTTTTGAGAGATACACGAACGTAGTGTATCTCTCCAAAAGGAACA
822836 TGCC
66 TGCC
822840 GTAGTGTA-TCGTCTGTTACGCTTTTGAGAGATACACGAACGTAGTGTATCTCTCCAAAAG
1 GTAGT-TACTCGTCTGTTACGCTTTTGAGAGATACACGAACGTAGTGTATCTCTCCAAAAG
822900 AAGTAGTAGT
Statistics
Matches: 59, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
69 57 0.97
70 2 0.03
ACGTcount: A:0.27, C:0.20, G:0.22, T:0.30
Consensus pattern (69 bp):
GTAGTTACTCGTCTGTTACGCTTTTGAGAGATACACGAACGTAGTGTATCTCTCCAAAAGGAACA
TGCC
Left flanking sequence: Indices 822271 -- 822770
AAGGGGGAATCGCACTTATCCCCCGTCTTTTTTGATTTCGCGCTTGGGTGCTATCACATGTGAAG
AAAAATCGTAGATAGAGATGTTTTTTTCTCTGAGTTTATCTGAGTGTATCTGCTTCGGTATTTGG
TCGACGGTGATGTCGCCCCGAAAACTAGTTCCAACCGATAGGTTGAGATCTATATATGTGGTTAG
ACAAGCGATAACTGTTAAAAGAAGCAAGGACTCCAATCCCTTATTTTACCAGTGCAGGTTAAGGC
AACAGGTACCGTTGTCAAAGGAGTTGGTTCTGATCCCCTTATCATGGCTCCTGCTCTCCAGTACC
TCAACCCAGGGAACTGCAGGGAAGCACGAAGTTTGACCCTCATTGCTGCCAAGGAAGGGCTCGCT
AAACGAACAGGAGTTTGATTCCCAGTGAGTAACTACCTTTTGAACTCAGTGAGTAACTACCTTTT
TCACTCAGTGAGCAACTACTAATGTTGCGAACAAAGGACACATTA
Right flanking sequence: Indices 822900 -- 823399
AAGTAGTAGTTACTCGTCTGTGTAGAACAAAGAACCTGAACTCGAGGACAGCTTTCTTATAGTAC
GGCTGCGCCTTGACCCAGAGTGCTCGTTTCAAATAAATGACTAGAAGTTTGTTTATCCACTATAG
GAAGTAGTAGTCGTTTCGCAAGTAGTCTTCTTACCAGCTAGCAAGGAAGTAAGCGAGCTTGTAGT
CTCATGTGTTTGAGGCTGGCCAGCTAGGAGTTTGATTGATGCTGTTAATTCTTCTTACGCAGTAC
CACGGGATATCAGGTTAGAAGTGCGCCAGATAGAATTTCAGTTCCAGACGTAAGATGAAAAGCCG
TGATTCTAGCTGTCCTATCAAGAGTATTAGGCTAGTGAATTGCTCGAGAGTTTCATTGTTGTCTC
TCATTCTCGCTTGAACTTATCGGATTGCTTATCATATAGTAGGTGGTGGGATATAAGAAGCCAAG
TAACAAGTAAGCCTGTCGTTTATATGCTTTGAGCTAGCAGATTCC
Found at i:834216 original size:17 final size:18
Alignment explanation
Indices: 834187--834222 Score: 65
Period size: 17 Copynumber: 2.1 Consensus size: 18
834177 CGCTAGAATC
834187 CAAAAGAAAGGAGTGAGG
1 CAAAAGAAAGGAGTGAGG
834205 CAAAAG-AAGGAGTGAGG
1 CAAAAGAAAGGAGTGAGG
834222 C
1 C
834223 TCGAGTTGGG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 12 0.67
18 6 0.33
ACGTcount: A:0.47, C:0.08, G:0.39, T:0.06
Consensus pattern (18 bp):
CAAAAGAAAGGAGTGAGG
Left flanking sequence: Indices 833687 -- 834186
AATCTCTTTTCTTAGGAGGGTGCCCCTTTATAGGTAGACCGTCTATGATTCACCGTAGTTTCGGC
TCTAGAGATTTGCTTTTTCGAGGGAGCGAACGAGCGAAGCAGGGGAAGGGAAGAAGGGGGTTTAC
AGACTCGATTCGAACCTATTGGAGCCTAGGAGCTGCTTCACCGAAAGAAAGTCTTTGTGGAGCTA
AATGAAGGCTAGAGAGATTACTTTCCTTTTCAATTGACTCTCTGTACTCCCTCGGCTGTAGCCTT
TCCTTTGGGTTGCTTGAAAAGAGAGAGAGCCCGAGAGCTGACAATGAGGAGTGTCTTTTACTGTT
ATAGCTTTCCAAAGACCATTCCTCTGAGTGCACTTAACCAGCCTGCTTAGTAGGGTTTGTTACCA
GCCAGCTTAGGGTTTGTTCTTTCTGTCCTTAATCCCTTGAGCTTTATTTCTTCTAGGTTAGATAA
GGAAGGGTTGGTTGCTATAATCAAAGAGAGTAGGTCGCTAGAATC
Right flanking sequence: Indices 834223 -- 834722
TCGAGTTGGGTAACGAGTTGGGTTATAGTTGAGCTAGCTAGGTATTCTACAGCACAGCCTCTGCA
GAGAGAAAGCAGGCAGGAATCAAATCCATACCTGACTTAAGAAGCAAAGCGAATCAATTCCTTCG
ATCAATGGAATTCCTTCACAGTGTCCTCCTTAAGTGTTAGGTCCTTTCCTTAGTGTTTCCTTAGT
GAAAGGTGCTAAATTCAATAGGGTTATGAGGGAAAACGATTCTATGTGCATTTTCGATTATATGG
AAGCCACATTCAAATCAGTGTATAGGTCCCCCCTCGTATTCAAAGTCAGTTTAATGAGGTTTCTT
GTTCGATTGCATTAAAACAGAATCGATTCTAAGGCAGGGTGGGTAACCCTTTTGAAATCCAAGGA
AAGAATGGGTGAGTTCTAGGGATAGGGTAACAGCCCTATCTTAGGAGAAGTAGTCTATCTTCAGG
GTAGAGGTCTATCTTAAGGGGAAAAGGTATATAGGAGTCAACCCC
Found at i:843432 original size:17 final size:17
Alignment explanation
Indices: 843410--843444 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
843400 TGGAAGGGAA
843410 TATTTCTATTTAACATG
1 TATTTCTATTTAACATG
*
843427 TATTTCTATTTCACATG
1 TATTTCTATTTAACATG
843444 T
1 T
843445 TAAGGCTAAC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.26, C:0.14, G:0.06, T:0.54
Consensus pattern (17 bp):
TATTTCTATTTAACATG
Left flanking sequence: Indices 842910 -- 843409
TAGATACTTGAGAAGTGCTAATCCGGAAAGGCGCGCAGCGAGAAGACTATGACTAGATAGACTTT
GAAATACGACTATAATACCGGCAATATTGACAAACTAGTGACAAAACATCAGAGCTCCATTCAAT
ATAGAAGAAGCATGAATAAGAATGAGCACATACTGGAGTAGCCCCAAGTGATGGTCCACAGAATT
GAATGAAACGTATACGCAAAGGGCGCCCCCTCTCTCTGTCTCTCTAGGCTTTCTGAGAATGGCGG
GAAGGAGAAAATGCAACTGGAAAGGATGCCTTTGGTAAAGTACATCTTCAAAAGCTATTAGTGGA
GTCTTCAAGCTATTAGTTGAGTGATTTGAAGTGAATTTCTTCACCTTCAAGATATTTCTTTCAAG
ATATTTAGCTTGTGTTCACACTTTGACTGCTATTCTTGCATGATGATCCTCTTATTGCCTTTTGT
ATGGAAAACTGAAATGAACAACCTGGGGATATCTATGGAAGGGAA
Right flanking sequence: Indices 843445 -- 843944
TAAGGCTAACCGCTTCATCTTTGCTTTTTTCTGAGTTGAGATTTGTTACACTAATAGGCTTTTTT
CTACTAATAGTTAGTTTGCTTGTGTGTTTTAGCAACTGTACTCTCTCCTTGATCCGGTACATGGA
TATAAGAGACTGGAGCAGCAACATCTGACGATTAGATCGACACTCTTGAACTCAAGCCAATTTCT
TTTTCGCAGAAGCTATCCTCGGTGAATTTAGGCGGGTGCTAATATCTTTGTGAGAGTGCAGAGCA
TGTTCACTTCTCTGGAAAAGGTATCACAGCAAATGGACTGAGAGCATTTGACTTCTGGGATTTTG
CTGTGCCCGATTGGCCAGCTTTCCATAGGCTTCGATACGCCCTTGAACGAGAACTTCGTTATTTC
CTATTTGGAAGAACTCCAATCTCCTGCTCGCGGTAAATCAGATAGGTGAATAAAGCCGACCAGAA
CAAAAATCCAATAAGTCAGTCAGTGAAGTAGAAGGTAAAATGCCA
Found at i:844189 original size:22 final size:22
Alignment explanation
Indices: 844164--844205 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
844154 TTACCTAGTG
844164 CCATTAGAGGACCACTCTAGCC
1 CCATTAGAGGACCACTCTAGCC
* *
844186 CCATTAGAGTACGACTCTAG
1 CCATTAGAGGACCACTCTAG
844206 TCACAAGCAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.29, C:0.31, G:0.19, T:0.21
Consensus pattern (22 bp):
CCATTAGAGGACCACTCTAGCC
Left flanking sequence: Indices 843664 -- 844163
AATTTAGGCGGGTGCTAATATCTTTGTGAGAGTGCAGAGCATGTTCACTTCTCTGGAAAAGGTAT
CACAGCAAATGGACTGAGAGCATTTGACTTCTGGGATTTTGCTGTGCCCGATTGGCCAGCTTTCC
ATAGGCTTCGATACGCCCTTGAACGAGAACTTCGTTATTTCCTATTTGGAAGAACTCCAATCTCC
TGCTCGCGGTAAATCAGATAGGTGAATAAAGCCGACCAGAACAAAAATCCAATAAGTCAGTCAGT
GAAGTAGAAGGTAAAATGCCAAAATCAAGTGTCTACAAGACACATCAAAATCACGGAACTAGCTC
ATCTACACAGACGGAGGTTCCGGCTATCGGTGACTTTACTCCCCCTATTCAGGAATTACCTTTCC
TAAAACCATACCATTCGTTGCCATTAGGTTACATATTCTAGTGCCTCCTTTTTACCTACTACTAA
GCCCCCTCCCTACCTAGTTTCAGAAATTCTCTACTTTACCTAGTG
Right flanking sequence: Indices 844206 -- 844705
TCACAAGCAATGCTAAGACGTTGATGATTTCAACACTTCATTTCCTAAGATGATACGTTACCCAA
GCAATGCTAATACATCCACTCATTTCACTACAGAAACGCAAGAAAGTGCTATAGTTCCAGTAGCG
CAATAGAAAAAAAAGAGAGCAAAAACACAGCTATATGATAAGAGTTGCTGACCTAGTTCCAAGAA
ATACCTATCCCAGGGAGCATTCCGTACAAGAAGACAAGAGGCCCGGAAAAACTACACATACCAAA
TGCTGTAAAGCAACTGGATATTCTTTCTTTTCAGTACCATCCGGAGGTGCTAGCTGACCGGCACT
TGTATTATTCATATTTCTTATTCTATCAAGCCGATAGCATAATCATTTTCTAACTAATCAAGTTC
TGTGACATCTACCGATCCCGTGATTCCGAATCAAGAGATTATTTGAGCAACTCGTGAGTCAAGTA
GTAGATTAGCCCTCGTACTCCCACTAGTTAAGTATCCGTCCTAAC
Found at i:846061 original size:24 final size:24
Alignment explanation
Indices: 846033--846081 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
846023 AGCTTCGCCC
846033 CAGTGAGTAACTACCTTTTTCACT
1 CAGTGAGTAACTACCTTTTTCACT
846057 CAGTGAGTAACTACCTTTTTCACT
1 CAGTGAGTAACTACCTTTTTCACT
846081 C
1 C
846082 GTAACATTAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.24, C:0.27, G:0.12, T:0.37
Consensus pattern (24 bp):
CAGTGAGTAACTACCTTTTTCACT
Left flanking sequence: Indices 845533 -- 846032
AGAAGACAGAAAAGGCACTTCGAAATCCAATAAAGTCTACTTCTTGGTGCACGAGTTCCGATCAG
ATATGATGTTTTTGCATCTTAATTTATTCACTAACATAAGAAATCCTTATTTCAAGTCCTGTTTG
AATTCAAGTCAAGTATGCACGAGTTATAGAAACCTTTTGAAGTTTCAGCAGCTCGCGCTACATAA
AAAGCGCCTGGAAGATCTGAGTAGCAGGTCCTAGGTACAATGCCTGGACGTACATCTAGCCTAAC
TAGGGACCTTATGAAATTTTCATAATAAGGGACGTCAATGGCAGGGAAAGTGCTCGGTGACTAGT
CGATTGAGAAAGATGGGGCTCTTGCTCCCGTTGCTACGCCTCCGACCTACATGTGATTCTTCTTA
TTCTTATGTCTCTACTCAATATGCCAATTTTGGGACAAGACAATAGCTGCAGGTGGTAGAGAAGC
CTTCCATTTCCTTTGGCTGAGCTTAGTAAAATAGAAGCTTCGCCC
Right flanking sequence: Indices 846082 -- 846581
GTAACATTAGTAGTTACTCGTCTGTTACGCTTTTGAGAGATACACGAACGTAGTGTATCTCTCCA
AAAGGAACATGCCGTAGTGTATCGTCTGTTACGCTTTTGAGAGATACACGAACGTAGTGTATCTC
TCCAAAAGAAGTAGTGTATCGTCTGTTACGAACAAAAAGAAGTAGTTAGTAGTTGCTTTTTGCAA
GAAAACTACTGCAGCAAGCAAGCAAGAATAGATAGGATGCGCGTACTTTATTTCTAACGCGCAAC
GGACGGAGACCTCGCGCTCAAAACTCAATCCTAAGCTTTTTTGTTTGTTTACGCTCGAGCGACTT
TCCGTTCCTTCGTTCGGTACGACTTGCAGTAGCAGTGGATTCATGTGTTTCAGGAGATAAATCAG
TATACTAATATCGTAGAAAGACAGATGGGCTTAATAATATACTCAAAAAGGTGGAGATGCAGGTT
ATTTTAATAGGTACTTAAGAAAGCAGAGGAATCAAAGGTCAAAAA
Found at i:846176 original size:69 final size:69
Alignment explanation
Indices: 846091--846219 Score: 242
Period size: 69 Copynumber: 1.9 Consensus size: 69
846081 CGTAACATTA
846091 GTAGTTACTCGTCTGTTACGCTTTTGAGAGATACACGAACGTAGTGTATCTCTCCAAAAGGAACA
1 GTAGTTACTCGTCTGTTACGCTTTTGAGAGATACACGAACGTAGTGTATCTCTCCAAAAGGAACA
846156 TGCC
66 TGCC
846160 GTAGTGTA-TCGTCTGTTACGCTTTTGAGAGATACACGAACGTAGTGTATCTCTCCAAAAG
1 GTAGT-TACTCGTCTGTTACGCTTTTGAGAGATACACGAACGTAGTGTATCTCTCCAAAAG
846220 AAGTAGTGTA
Statistics
Matches: 59, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
69 57 0.97
70 2 0.03
ACGTcount: A:0.27, C:0.20, G:0.22, T:0.30
Consensus pattern (69 bp):
GTAGTTACTCGTCTGTTACGCTTTTGAGAGATACACGAACGTAGTGTATCTCTCCAAAAGGAACA
TGCC
Left flanking sequence: Indices 845591 -- 846090
CGATCAGATATGATGTTTTTGCATCTTAATTTATTCACTAACATAAGAAATCCTTATTTCAAGTC
CTGTTTGAATTCAAGTCAAGTATGCACGAGTTATAGAAACCTTTTGAAGTTTCAGCAGCTCGCGC
TACATAAAAAGCGCCTGGAAGATCTGAGTAGCAGGTCCTAGGTACAATGCCTGGACGTACATCTA
GCCTAACTAGGGACCTTATGAAATTTTCATAATAAGGGACGTCAATGGCAGGGAAAGTGCTCGGT
GACTAGTCGATTGAGAAAGATGGGGCTCTTGCTCCCGTTGCTACGCCTCCGACCTACATGTGATT
CTTCTTATTCTTATGTCTCTACTCAATATGCCAATTTTGGGACAAGACAATAGCTGCAGGTGGTA
GAGAAGCCTTCCATTTCCTTTGGCTGAGCTTAGTAAAATAGAAGCTTCGCCCCAGTGAGTAACTA
CCTTTTTCACTCAGTGAGTAACTACCTTTTTCACTCGTAACATTA
Right flanking sequence: Indices 846220 -- 846719
AAGTAGTGTATCGTCTGTTACGAACAAAAAGAAGTAGTTAGTAGTTGCTTTTTGCAAGAAAACTA
CTGCAGCAAGCAAGCAAGAATAGATAGGATGCGCGTACTTTATTTCTAACGCGCAACGGACGGAG
ACCTCGCGCTCAAAACTCAATCCTAAGCTTTTTTGTTTGTTTACGCTCGAGCGACTTTCCGTTCC
TTCGTTCGGTACGACTTGCAGTAGCAGTGGATTCATGTGTTTCAGGAGATAAATCAGTATACTAA
TATCGTAGAAAGACAGATGGGCTTAATAATATACTCAAAAAGGTGGAGATGCAGGTTATTTTAAT
AGGTACTTAAGAAAGCAGAGGAATCAAAGGTCAAAAAGTTTCAAAAGTTAGTGTGAAGAAGGCCG
TGCAGATCAACCATGGTGAGTGGCTCCTTTCGAGTGGTGATGATGGTGGTCACAAGCGACTCGTA
GTCGTTGCCAAGCCCAGAAAGGGTGTAGAGGATGAGATCCTGCTC
Found at i:905667 original size:24 final size:24
Alignment explanation
Indices: 905635--905683 Score: 82
Period size: 24 Copynumber: 2.0 Consensus size: 24
905625 GAATTTGCTC
905635 CAGTGAGTAACTA-CTCTTTTCACT
1 CAGTGAGTAACTACCT-TTTTCACT
905659 CAGTGAGTAACTACCTTTTTCACT
1 CAGTGAGTAACTACCTTTTTCACT
905683 C
1 C
905684 GTAACATTAG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
24 22 0.92
25 2 0.08
ACGTcount: A:0.24, C:0.27, G:0.12, T:0.37
Consensus pattern (24 bp):
CAGTGAGTAACTACCTTTTTCACT
Left flanking sequence: Indices 905135 -- 905634
GAAATGAATCCGTGTGTTTTCCAGAAATCTGCGAAATAATCTACTCCAAGCGATTTCTTGAACCG
AAGCCATTGACTAACTAGCCAGCCTCCTTGACTTTCGCTTTCTGTAATAGTACAGAGATCAGCTA
GGGCTTTTCTCTTTGTGTAGTTTGCGGCAGAAAGCAGCACCCGAATATGTATTCCTTAAGATCGA
AGGAGAAGAGTAAGGCACATACGTTTTTTTAGAAAGAATTTCGTATATTAAAGAGGAGTGGTATT
TTGCTTATCGCTGTTGATATAGGCTTCGAAGGTGGTGGCTCAAGAAGACCCTCACTCGGTAAGTG
TCAATATGGTAGTTTCAGATGGAAAGGAATTCTGTTCCTTAACACGAAATTCCCAGCTAAACACC
ACCGGGCAGATGTGAGAAGGCTGCCTTCAGTCGCAACTAGATTAGGGAGGGTTGAGACCAATTTG
CTAACTCAATTTGGCAAGTCATTTTTCTAAACCTCGAATTTGCTC
Right flanking sequence: Indices 905684 -- 906183
GTAACATTAGTAGTTACGAACAAAAAGACAACATGCCGTAGTGCGTGCCCTCCACATTCAATTCA
TCATCAATTCTCTCATGATCATCGGCAAACTCCTCTGTCGTGATCATATGTACAGCAAATTCAAG
GTATTCACACCTCCCCTTTTCGTCAGCATAGTACACTCTCCTTTTCTTTGAGTGCTCCTCTTCGT
GCCATCTGGTTTCCTCCTTTGTTTTGTCTCTTTCTTCTGCCATTCCATTCTTTCAGCCAATGCAC
TGTGAACACGTTTTTGGCAGCGATTCATTCTTTTGAATTCGAATATCGAAATTCTTTGAATGCTT
TGATGGCATGATGAAGTATGCAACCGATCCCTCACCCCTGTCAACGCTTAGAACGCGAAGTTCGC
ATTCAAAGAGAGGATATAAGCTTATGGGTTAACCCCGTATTATACAATTTTGACTAACTTGGATG
AAGCCTCTGAAGAAAGAAGCAATAGCATTGAGACGAGACAGCAAG
Found at i:909504 original size:28 final size:29
Alignment explanation
Indices: 909473--909527 Score: 94
Period size: 28 Copynumber: 1.9 Consensus size: 29
909463 AGCCACCCGG
*
909473 AAGGAGACAGAGCCGA-CCAAGCTTTCTT
1 AAGGAGAAAGAGCCGAGCCAAGCTTTCTT
909501 AAGGAGAAAGAGCCGAGCCAAGCTTTC
1 AAGGAGAAAGAGCCGAGCCAAGCTTTC
909528 ATCTTTTTAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
28 15 0.60
29 10 0.40
ACGTcount: A:0.35, C:0.24, G:0.27, T:0.15
Consensus pattern (29 bp):
AAGGAGAAAGAGCCGAGCCAAGCTTTCTT
Left flanking sequence: Indices 908973 -- 909472
ATGGAATATAGAAAAGTGGTTGAATCACACAAGTAGCGAAGTCATCCATCCCCGGCAAAACCAAG
GAAGGCGACGAGTGCTTTCGTTCTTCGACACGCAAGAGATGAGGTACTCTCAGAGATTTCTCCTG
GCTTAATTAATCCAGTTTTCTCTCTATGCTTCTCATTAGCAACTCTATCTACAGGCTCGCCCCCA
TAGGATCTTGAGCTTTCTCCACCTGTTGATGTAATCGAGAACACTTACGCTTTCTTTCCTCTTCC
GTTTTTCATTTTTTCATATATAGCGTATTTTCAGTTTGTATGGTAGGTTTGGTTGATACCCAAAG
AGTTCTATTACTGAAATCTGCGATGAAACAAGATACAATGAGTTGGTTAATTACGAGGGAAATTG
AAAAGTAGGACGTTTTGACCGGGGTTTCTTACTTTGTCAACTTTGAAAACAAGAAAGCAAGCACA
TCGAGGAGGACCTATTTCAGGAGAAAGAGCAAGCGAGCCACCCGG
Right flanking sequence: Indices 909528 -- 910027
ATCTTTTTACGAAAATAGAAAACAGTTGCTTTTCGGTTATAAAGAAGTTGTTTCAGAATTGAAAG
CTACAGGAAGTTACAAAGTGTATGTCTACAGTCAAGTTACCAAGAAAAGATAGCAAATTAGTGAA
AAGAAAAGGGCTACTAGAAAGAGGAGCTTGGGCCTATCTCTCTAATACCATCTATGCTGCTAGCT
AGCAAGATATGAAAGACGACCAGCTGCTGCTTTCGTAACAGAGATGGCCAACTTCAGAAATGCCG
GCGTCCAGTGCTTCCTCCAAGCCAAGCTTTTTATAGGTGTAGTTTGATTCGATCGCTTTCTCTAC
ATCCTGGAATTCTTAGGTGCCCCTGCTCTAGGATCTGTTCGTTCTTTCTTTTCATCCACAGACGC
TGAGACTTTGACTGTCACGAAGTGGACTCCCGTTGGACAAGGCTGCGCCCATTACTTAATTGTCA
CAGAATGGAATGCTCCTATTCCTTTAGGGCTTTAGGCTCTTTCTT
Found at i:926830 original size:16 final size:16
Alignment explanation
Indices: 926792--926830 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 16
926782 TTTTGCAAAA
*
926792 AGATGAGGTTGATGTC
1 AGATAAGGTTGATGTC
926808 A-ACTAAGGTTGATGTC
1 AGA-TAAGGTTGATGTC
926824 AGATAAG
1 AGATAAG
926831 CGAAATCTAC
Statistics
Matches: 20, Mismatches: 1, Indels: 4
0.80 0.04 0.16
Matches are distributed among these distances:
15 1 0.05
16 18 0.90
17 1 0.05
ACGTcount: A:0.33, C:0.08, G:0.31, T:0.28
Consensus pattern (16 bp):
AGATAAGGTTGATGTC
Left flanking sequence: Indices 926292 -- 926791
TTGCTCAAACTGAATTACGCCAATGTTATGGAAGTTCCTGGATCCTTTGAAATAAGATTAGTACC
AAAAGCAGGAGTCTCTGATTTCAGAGTCCAATTTTGGAAATTGGCTACGGAGGTTTTGTGCGGTC
AGATATTCATACGGAAAAGCAGGGGCCCTGATTTCAAAGCAGGAAAGTCCTTTCGATCCAATCCA
TTCTTGGGGTCCAAAAAAGACACTGGATATGTAAGTAACTTTTCCCGACAAAGCGTTGTCCGCGG
GCATGGAATGTTCAATTTTTTGGTAAGAATCTTGACAGTAATGTCTATTTTAGATTATCCGGTCG
AAATACGGGAAAATTCCATTCAATTTGCTATGGAAACGGAGTTTTTAGAATTCTCCCCAGAACTG
GAAGATCATTTCGAGATATTCGAGCATATTCGAGGGTTCAATGTGACTATTTGCACTTCGGCCAA
CACAAAAGATGAGACTTTACTACTGTGGAGCGGCTTTTTGCAAAA
Right flanking sequence: Indices 926831 -- 927330
CGAAATCTACGAGATCACAAACGTAGATTGCTTGCAAATGAATTGAGACGAACTCTTCGAGCCTT
TGTCAAGATACCGATCTTCCGTCTGATCTGCGGGAAAAACCTCGTTCGTTGTTGTCCAAGTTGCC
AAGCAAGAAAGAGTCCCTTTGCACGAATCAGAAACCGATGTATTGACACGGGTCGCCCTCGTGGA
GTAGATGAGTTCTTTCGCATTTCTCATATATCTCGTTTTTCGTGGATTCGCATCTCGAGGCTCTT
TGATGGGTATAAAGAAATCGTCTTGGTAGAAAGCACCAAACCAATAGAACAAAGGTGAGCTCCGC
AGCTGGTCCACAAGCAAGGGTTGTAGGTCTATTACCGTCCGGCTCCGGACCGAAACGGAGGAGGC
ATCCCAACTCTCCTTTCGTAGATGCTAACGGGACGGAAATCGAAGTGGGGGACCTATCCACCTCC
CCAGACATAGACTACGTACAGGGTAAGATCACCGCGTAAACAAGA
Found at i:961517 original size:14 final size:14
Alignment explanation
Indices: 961498--961529 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
961488 TAACACATGG
*
961498 AGGTTGTTCTACAA
1 AGGTTGTTCGACAA
961512 AGGTTGTTCGACAA
1 AGGTTGTTCGACAA
961526 AGGT
1 AGGT
961530 GCGAAGTAGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.28, C:0.12, G:0.28, T:0.31
Consensus pattern (14 bp):
AGGTTGTTCGACAA
Left flanking sequence: Indices 960998 -- 961497
TACTCCAATCTGAGCTGTGTGAACATTCCATGCTCAATATGCCGAGTCAGTCTAATGTCCAACCG
ATTCCTAGTTCACATCCTCTAGAGCAAGGATCCCCCTCAGTAAGTAGGCCACAAGCTGCGCCTTC
TTTCATCGAGTTACCCTTTTTTTCCTGCACCAAAGCAGCTACAACCTCCCTATGCCAAGTGACCC
GGGTCCTACCCCATACCATACCCTTTTTGAATCTCCTAGAATTGCTAATTACCATTCCCAGGCTA
GACCAATTCAAAGAAGCTCCATTCATACCGTTTGATTGATTTTGACATTAGAAACCTAGTTCAAG
GCGCCGCATCTCAGCCCTTCTCAATAGAATAATCCATGTGCCTTTGTCCGAACGGAGTATCTTCA
CCGATAATCCATAAACTCATATAGTAACTGTCTCATATTACTGTCAATATGGGTAGTAGTATATC
ACTACTGCATTCCTACCTCTTCAATGACATATGCTTAACACATGG
Right flanking sequence: Indices 961530 -- 962029
GCGAAGTAGACAGAAAGTCCCAAGAGATAGGAAAAAGGACCTCTTGCTCCTTCACTCGCTGCTAG
TTAGTCTATGGCATCGTAGTTTGATCACAAGCTCGTACTAACCAGAATAATATATATATATGATA
ATGAGAAAAAATACAATAATCAAAAAACAAGCAACGATGGAGTAACAAATCACCGACGGTAGGCA
GCAGATAGCTTGGACAAAACACCGACATATATTCTATTTCGAAAATGGAGGACATGCTTCATTAA
CCGGGCCCTTTCATTAGAAAGACCGAATGCCAGCCATTACTAGCTCAGCCGTCAAGTCTCTTCAA
AAAAGTCTGACACTACTCACCTGAGCATTTGCTTCCTTCAGCCCAACAACGAAACCTTAGGACCT
TGCTTGCGACGCACTTGCATTTTCACAATACTCTAATCCCTTGCTTGAATAGCGGAATAGAGGGT
GGTAGTCCCCATCTCACCATAGCAGATCGAATCTCGGTACAAAGG
Found at i:964772 original size:31 final size:31
Alignment explanation
Indices: 964734--964909 Score: 352
Period size: 31 Copynumber: 5.7 Consensus size: 31
964724 ACTACACCCA
964734 GCGAGTAACTACTAACGTTACGAGTGAAAAG
1 GCGAGTAACTACTAACGTTACGAGTGAAAAG
964765 GCGAGTAACTACTAACGTTACGAGTGAAAAG
1 GCGAGTAACTACTAACGTTACGAGTGAAAAG
964796 GCGAGTAACTACTAACGTTACGAGTGAAAAG
1 GCGAGTAACTACTAACGTTACGAGTGAAAAG
964827 GCGAGTAACTACTAACGTTACGAGTGAAAAG
1 GCGAGTAACTACTAACGTTACGAGTGAAAAG
964858 GCGAGTAACTACTAACGTTACGAGTGAAAAG
1 GCGAGTAACTACTAACGTTACGAGTGAAAAG
964889 GCGAGTAACTACTAACGTTAC
1 GCGAGTAACTACTAACGTTAC
964910 TCACTGGGGC
Statistics
Matches: 145, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 145 1.00
ACGTcount: A:0.38, C:0.17, G:0.25, T:0.20
Consensus pattern (31 bp):
GCGAGTAACTACTAACGTTACGAGTGAAAAG
Left flanking sequence: Indices 964234 -- 964733
TGGTAGCCGGTCATTTGGTGGTTATTTTGGGTACATACCAAACGATAGAATGTTCTATTTGTAAA
GGAGTGCACTCTCATGTGATAACTTGTTGTGCCAAGTGAATAAGGTACATGTAGGATTATATAGG
TACCAAATGTGGGGTGTGTCAGACTGTAAGCATGGACTTTCTCACAGGTAGTCGGGTTATTGGTA
ATAGTATAAAAGCTAACTCAGTATGCTTCTTACCCGTGTCCCCTCCGTAGCAAGCTTGAGAAAAT
TAATAGACTGCATGGGCTGCCTACTCACAGAATTACGTAGATCCCATCTTTCTTAGTGTGTTGTG
TACATAGAGTAGGTAGTCACACTTTGAGTACCGCCTATCACCCGACGGGCAGAGAGGTTCAATCA
ATGCATATATACCTATGATGCATGTCCACACAACACGAAGATGGGTAAAATGTATACCGTTAGCG
GAGTGGTGTTACCCAGCTTGAACTCATCTAGAAAAACTACACCCA
Right flanking sequence: Indices 964910 -- 965409
TCACTGGGGCGCAGCGAATTCAGTAGTGAAATGAGGAGATGAAAAGGCGGCAGGACCACTACTCC
CTAGACCGAACTTCAGTACTTGACTTATCCACATCTACTTTCCCTAGTCCCAAGAAATGCCCTAC
CTCAGCTGAAACTAATACTCTCTCGCCCTATTGTACTTTCCTAGTTTGGTGAGATTCGAGGTTAC
CCAATGCTAGTCCCCTAGTGAAAGAACTCCTACCTAGTCCTCTTTTCCAACGAAGAAGGCATAGG
CGCTACGCCCCAAATCAATGACCTATTCTCCTACTTTCAATATCCTACCATTTGACTTCACACTC
ATATGCCTATTCCAGTCCCAAGCGCCCTAGTACTCATGAATACCTAGTTGACTTACTTTACTAAG
CGTGTACCGCAGGTGGTGAGCAAGAACCTTCGCCCTGATACCTTCTAATCCTAGAAGGCAGAACT
CATAGAACAACTATCGATTATAATGCAGAAGACACCATACATTCC
Found at i:968851 original size:25 final size:25
Alignment explanation
Indices: 968822--968872 Score: 77
Period size: 25 Copynumber: 2.0 Consensus size: 25
968812 CTTTTGTTGA
968822 AGACTGAAACTCG-AATACAAATAGC
1 AGACTGAAACTCGCAA-ACAAATAGC
*
968847 AGACTGAAACTGGCAAACAAATAGC
1 AGACTGAAACTCGCAAACAAATAGC
968872 A
1 A
968873 AACTAAGAGA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 22 0.92
26 2 0.08
ACGTcount: A:0.49, C:0.20, G:0.18, T:0.14
Consensus pattern (25 bp):
AGACTGAAACTCGCAAACAAATAGC
Left flanking sequence: Indices 968322 -- 968821
GCGGAAAAAAGGTGTCAAAGTTGATCCAATTGTGATTCCACCGGAGGTGGATCTCGGAATTTCAT
TCCAGTATCAGACTGTTTAGATGCAACTGATGGATGAGTTGGTACTTTCTTCACTTGGTTATTTA
TTGCTTCAAAAGTATTTCCCAGAGTATTTTAGTGGTCGTACTGCTTTAGATACTCACTTTGCTAT
ACATACTAATGGAAAAAAACTGCACATTTTGCAAATTTCACCGCTCTCTTTCCTTTTCACTTTTT
TTTGACAGAAACTCATATAGTATATAGTTTCTTTTCTATTTTCAAAAGTTATTTGCTCTTTTCTT
TGATTCATTCTGTTTTGCGCCCCCTCTCCTCCCAGTCGTCACCAACACAAAAAATGAAAGAAGCC
CGCATCCCCCTCTTCTTTCCCCCCACCTACCGGGTAGGTAAGTGGGGGCCTCGTACTATCTATTG
GCCTTGGGAGCCGCTAGAGAGACTACACCAAAACTCTTTTGTTGA
Right flanking sequence: Indices 968873 -- 969372
AACTAAGAGAAGAATGAATTTTCATGATGAAAAAGAGAGATATGAAAAAGACAACTCATTATTGA
AGAGGGGGTTGAGGGACCAGCGCATCCTTTATTAGAGAGTCCAGCATATGCGGGTTCTGTTGGAG
TTTTTCATAGAGCTCCTCTAGTGTGGGTATATGCATTTCTTGGTCAAATTCTATATCTCGTAGCA
CGAACTGTGCTGTGGTACGAACATAGTGATTTGGGTCGCCATAATGCAACATACTCATTTGCTCG
GCAATTTGTCAAACATTATTTTCCATTAAGTGGGCACGCACTTGGGTTTCGATGAACTGGGAAAT
ATTGTGATTGAGTACAAGGCGACGTACCGCATCCTCTAGACCATTCAGTGGAAGGTGCGGCCCAG
GCGCCGGTGCTTGTGGTTGTGGTATTATTTCTTGTACCGGTACTAAATCCTCTCCTTGGATTTGC
AAATTCCCCGGTGCTTGTGGTTGCGGTACTATTTCTTCTTCTCCT
Found at i:974735 original size:16 final size:13
Alignment explanation
Indices: 974701--974728 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
974691 ATACTATCTC
974701 TACTATGGCCTTT
1 TACTATGGCCTTT
974714 TACTATGGCCTTT
1 TACTATGGCCTTT
974727 TA
1 TA
974729 ATACTATAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.18, C:0.21, G:0.14, T:0.46
Consensus pattern (13 bp):
TACTATGGCCTTT
Left flanking sequence: Indices 974201 -- 974700
CGGGGTTGCGTACTTAATTCACCAAGCGGGATCTCGGATATCGGGGAGTCCGTTTTTTCGACTAT
GAGTGTTGGGTAGGAATTGGAGTTTCCCATCGGTGCAGCGTTGGCAGTAGTAAGGTGGGCTCTCA
GCTAGTAAGCAGGGTAGTCTGTGTCTCCTTCTTGCTTATGCAGTTACTCAGCTCAACCCAAAGAG
AATAAATAGACGAATTTCTGTCAACTATCTGCCCCCATACATATGATCCTTTTCTTTGACCTCTT
ATTTTGATATACATCGGCCCTCATTCTTTTATACAAAGTCCCAAATTAATAAGAATATCATCGCC
CCTAACTAATAAGAAGAATAATCCCTAAGTAAGAAGGACTCATTCTTTCCGCGAGCAGGATTTGA
GCAAAAGTTCCTCGCAGTGCCCCTGGTGAGTAAGTTGTTGGTAGCAGTTGAGCAAGGGATACGTG
GCGTTTACTACTATCTATGGCCTATGGCTCTTTCTATACTATCTC
Right flanking sequence: Indices 974729 -- 975228
ATACTATAATGTCCTCCCTATTGCCTCTGGCCGGCTCACTAGAGAAATTTGACCGGACGGGGTAC
CAGCCTATTAGAAGAAAGCACGGCACTGGCATTTTCTTTGGTGGGTCACTTCAAGTCAAAGTACA
AAGAATGCACCACTAAGTTTGACTGATCTTTCTACCTCATGTGTATCTTCTTATAAAGTAGGTAC
TTTATGGGCTGAAAGAGGAGAAGGGGGCTTAAAGAGGAAGGGCCCACCTAAAGCATGCTTTAATA
GACAAGTTCAAGGCATGTCGCAACTTGCCTTCTATTGCTCCCAATCTGAAGCACCCCTCTTCTTC
AAATGCATTCCTCACGAGATTGAGGCCACTCTGCCTAACAACCTTTCTTTCACAAGGCCGTCAGG
TCGATCTAAGGCCTAAACCTTTCGAATCAGTAGTGCCCGCCCAGAGTACTGGCTTTTCCCCGTGC
CCCAATTTGCTTTTATTTATCCTTTCTTCTGAGTGAAAGATTTAT
Found at i:980887 original size:13 final size:14
Alignment explanation
Indices: 980869--980898 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
980859 TATTTACGAT
980869 AAAAAAG-AAAGAA
1 AAAAAAGAAAAGAA
980882 AAAAAAGAAAAGAA
1 AAAAAAGAAAAGAA
980896 AAA
1 AAA
980899 GAGAGCTCGA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.44
14 9 0.56
ACGTcount: A:0.87, C:0.00, G:0.13, T:0.00
Consensus pattern (14 bp):
AAAAAAGAAAAGAA
Left flanking sequence: Indices 980369 -- 980868
TCCGAGACTATGAACAGAATAAAACCATATCGAAGTCCTAATTGTACAGCTTTTGTATGATGTCC
TTCCAATGTGGACTCACGTAGAACATCGCGCCACCATACAAACATGGTATATAGGAGAAAGATTA
GACCCAAACTTAGAAGTGTTGCACCCCCTTGAAATGAGTGCATGTACATCACACCACCAACGGTG
GTTGCCAAAGCTCCGAGTGAAGCCAAAAGCAGTGAAAATGGACTTGGATCTACCAAATGATAAGA
ATGTCTCTGAGATTCACTGCTCGTAAGGGAGGGAATCAGCCAAGGCAGCATCACAGACAGATCAT
GTGGTTGTGAAAAATAAGTCAATTTATCAAGTTGAGGCATTTGTTGATCTAATCGACCTTGTTTG
TGAATTAAAGGGCCTTAAAACAAAATACTATGTGTTTCGATCGACCGACGCCAAGAGAAGAAGTA
AAGAACAATTTCTCTTTCTCTTCTAAAAAAGACACTATTTACGAT
Right flanking sequence: Indices 980899 -- 981398
GAGAGCTCGAGCGGTTCCTCGTTCGTTAGCAGGACCAGAGCCGAGCAAGTGGATTTAAGAACGAG
CCATTCATTTAGTAACGATGGAGCGAGGCGACCAATAGGTAAGAAAGGAGAGTTTCATTGCTTCA
AACCCAATTCGTTCATTATATCGTAATGGTGAAACGAATTCCTTTTCCCCGGAAACCCAACTCTG
TTTTCTCGAAACAGCTGAAAAAACATTGAAAAGATGGTCTATTTTGAGCACCAAAAAGCTATTGC
ATAGTTCAGTATAACGAAGGGTCTGATATCTTAGTACACAAAGGTGCTTTCAAAAGCCATGTGAC
TCGTGAATGGTATAAAAAGAAATAGAATTATTGAAGTTACAAACATGAAGTGGAGATATCAAATC
CTTTCCTTGTTGAAAGCAAAAGTATGACAATCAAAGAAAAAACTGAAGCATTCAAACTCTCATTG
CCTGAAGCTAGAAAAAGAGAGAGAGTTTTGGATTCAAATTCGAAG
Found at i:998503 original size:23 final size:23
Alignment explanation
Indices: 998455--998504 Score: 66
Period size: 24 Copynumber: 2.2 Consensus size: 23
998445 CGAGTGACAA
* *
998455 CAAAGGTAGTTCCTCACTGAGTT
1 CAAAGGTAGTTACTCACTGAGAT
998478 CAAAGAGTAGTTACTCACTG-GAT
1 CAAAG-GTAGTTACTCACTGAGAT
998501 CAAA
1 CAAA
998505 AAGTCTGTCT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
23 11 0.46
24 13 0.54
ACGTcount: A:0.34, C:0.20, G:0.20, T:0.26
Consensus pattern (23 bp):
CAAAGGTAGTTACTCACTGAGAT
Left flanking sequence: Indices 997955 -- 998454
GGGGAGATGCTTTTTGAGTACTGGTTGGTGGTATTTGGGAAAGTGGTGGGTTCAGCTCTAACTTA
TTGTAGCAAGTCATTGACCTGTATTGCTGAAATTCCTTGGCGGATTCTGGAATCAAGCTCAAGTC
AGATAAGCCACCCAAGAACATAGGAAAGAATAAAGTAAGTCAGACAAAGACAGAAGTTGCTCTGT
AGGATGACCATTACTACGAGTGCTTAAGAGATATGTATGTCACCCTCTTTCTCCGGCTTCTAAAC
GAAAGGGCTTTGTGGCCCACAACGTGCAATGGAAAGTGCTTTTCCGCCCGCGCAGACAGAGTCAA
AAGGGGCATAGTGGTGCTAGCGACGACTCTTTGCCTTGAGAATAAGGCGCTTTGTTGGTGCCCTC
ACATGCCACGGGCGACTTCAAGTCAGTATTTCTGTCCTAAGCTTTCGAATTCAAGCATACAGGCT
TTTCGTTCGTAACAGACGATACACTACTAATGCTGCGAGTGACAA
Right flanking sequence: Indices 998505 -- 999004
AAGTCTGTCTATTTTCAACGCTTAGCTATGGATTCAACATCCGACTTCCTTTTTTGAGCCTGAAA
CAAAGGAATATAATAGGCACCTCACTCCTCTACAGCTAGTAGAGTCTACCTCCTCTCTCTTGGTC
CCCTTTCAAGTATGGTTCTCGTACGGTATCGACCCTCCGTCAGGGGTGACGAAGACCAACCCAAC
TTCTGCAAGGTTCTGGTTGCAAATGGAAAAAAAAACCATTTTGAGTAGTTCCAAGTGTCAAGATA
GAAAATGGCTCATGCAAGGTTTCGAGTTTGAAGGAGACCAACAAAACATGCCGTTGGTAACCTAT
GAAATGGTTCTGGGTAAGGAATGATTAGACCTGGTGGAACCCATGTTGGTAGACTGCGGCAAACA
AGACATGTAATTTGAGGTGAAAAAAGGAAAGAAAGGCGGTTATTATCAAAGGAGAGCCTGAACTG
AAACCAACAAACTGGCATAACAGGAAGTGCGCTATCTTACTTTTT
Found at i:1040275 original size:19 final size:19
Alignment explanation
Indices: 1040230--1040281 Score: 67
Period size: 19 Copynumber: 2.9 Consensus size: 19
1040220 CTTATTAATC
*
1040230 TTGTCTAGTGGTA-TTTTA
1 TTGTCTAGTGGTACTTTAA
1040248 TTG---AGTGGTACTTTAA
1 TTGTCTAGTGGTACTTTAA
1040264 TTGTCTAGTGGTACTTTA
1 TTGTCTAGTGGTACTTTA
1040282 CTTGAAATCT
Statistics
Matches: 29, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
15 7 0.24
16 7 0.24
18 3 0.10
19 12 0.41
ACGTcount: A:0.19, C:0.08, G:0.23, T:0.50
Consensus pattern (19 bp):
TTGTCTAGTGGTACTTTAA
Left flanking sequence: Indices 1039730 -- 1040229
TTCTCCGCCCTTTCTCTGTCAGTATCGAGCGAAGCGTGCTTGACGCCGAAGTCATACGTTTTACA
GCAGGGCCTACTTCCACTCTATAGAGCACACCTACATGTTGTCCACATGCACCGGCTTTCTATCT
ACATAAGGACCCTAAGCCACAACTCCATACCTTTTTCTTTATCAGAATGATGACTAAACTTCGGC
GCATGGATGGTTTTGTTTTCATGGATGTTATATACCTGAAATGTATTCAGATTTCACGGGGCGGA
GTCTTCAAAGAAATTGACTGATGTGCCAGGGATGTCCCACCACTTTTGACATAGACTCAGATATA
AAACGTTTTGATCATTATATAGATTTCTGACTTAATAATTTCAACAGTTGACAAGTCTAATAAAA
GATTTCAGCAATGTCACAGGATGAATATAGCCTTTGAAATGCAATGAGGCCCTTCTCCTCTTATT
AATCTTGTCTTTCTCGCTTCGCGCCTTCTCTTTCTCTTATTAATC
Right flanking sequence: Indices 1040282 -- 1040781
CTTGAAATCTTTGTTCATAAAAGCAAGCAACATATGTCTTTTTGAGATATGTAGTATGTCTTTTT
GAGATATGTAGATAGAAGACCACATACATTTCTATGTATCTGTTCAAGATAAGATAGTTTACCGA
TTTCAAGAGAAGATAGTTTACCGATCATTTTCTAACCATTTTCGGCTACTTTCCAGAGTATAGAA
AGAAGAGAGTACATAAAAACGATGAAAATCAGAATGCTGAGAGAGACGAGCAAGAAAATCTCTCA
GGGATGCCATAGAGAGGGATGCTGTGACAAACTCTCTGATTAACAAAGCGGAGAGATCCTTACTA
ATGGATTCAGAAAAATGCATTGGTCTTCCAAAGAGTGCCATTCCAATGCTTGAGTAACAGAAGAT
ATCGAGATAGGAGTGACCGCTACACCCAGCCAACTAACTTTCTCTTGACAAAGAAAAAAGCTTGT
CACTTTTCTCACGAATACTCTTACACACATAGAGTCTATCATCCT
Found at i:1040342 original size:22 final size:22
Alignment explanation
Indices: 1040314--1040357 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
1040304 GCAAGCAACA
1040314 TATGTCTTTTTGAGATATGTAG
1 TATGTCTTTTTGAGATATGTAG
1040336 TATGTCTTTTTGAGATATGTAG
1 TATGTCTTTTTGAGATATGTAG
1040358 ATAGAAGACC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.23, C:0.05, G:0.23, T:0.50
Consensus pattern (22 bp):
TATGTCTTTTTGAGATATGTAG
Left flanking sequence: Indices 1039814 -- 1040313
TATAGAGCACACCTACATGTTGTCCACATGCACCGGCTTTCTATCTACATAAGGACCCTAAGCCA
CAACTCCATACCTTTTTCTTTATCAGAATGATGACTAAACTTCGGCGCATGGATGGTTTTGTTTT
CATGGATGTTATATACCTGAAATGTATTCAGATTTCACGGGGCGGAGTCTTCAAAGAAATTGACT
GATGTGCCAGGGATGTCCCACCACTTTTGACATAGACTCAGATATAAAACGTTTTGATCATTATA
TAGATTTCTGACTTAATAATTTCAACAGTTGACAAGTCTAATAAAAGATTTCAGCAATGTCACAG
GATGAATATAGCCTTTGAAATGCAATGAGGCCCTTCTCCTCTTATTAATCTTGTCTTTCTCGCTT
CGCGCCTTCTCTTTCTCTTATTAATCTTGTCTAGTGGTATTTTATTGAGTGGTACTTTAATTGTC
TAGTGGTACTTTACTTGAAATCTTTGTTCATAAAAGCAAGCAACA
Right flanking sequence: Indices 1040358 -- 1040857
ATAGAAGACCACATACATTTCTATGTATCTGTTCAAGATAAGATAGTTTACCGATTTCAAGAGAA
GATAGTTTACCGATCATTTTCTAACCATTTTCGGCTACTTTCCAGAGTATAGAAAGAAGAGAGTA
CATAAAAACGATGAAAATCAGAATGCTGAGAGAGACGAGCAAGAAAATCTCTCAGGGATGCCATA
GAGAGGGATGCTGTGACAAACTCTCTGATTAACAAAGCGGAGAGATCCTTACTAATGGATTCAGA
AAAATGCATTGGTCTTCCAAAGAGTGCCATTCCAATGCTTGAGTAACAGAAGATATCGAGATAGG
AGTGACCGCTACACCCAGCCAACTAACTTTCTCTTGACAAAGAAAAAAGCTTGTCACTTTTCTCA
CGAATACTCTTACACACATAGAGTCTATCATCCTTCGTCACAGAAGAGTACCTTTTTGACCTGTT
TGATGTAATTCTGTCTTCGAAGAACAACCAAAGAAGAAGTATCCA
Found at i:1040424 original size:24 final size:24
Alignment explanation
Indices: 1040389--1040436 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
1040379 TATGTATCTG
*
1040389 TTCAAGATAAGATAGTTTACCGAT
1 TTCAAGAGAAGATAGTTTACCGAT
1040413 TTCAAGAGAAGATAGTTTACCGAT
1 TTCAAGAGAAGATAGTTTACCGAT
1040437 CATTTTCTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.38, C:0.12, G:0.19, T:0.31
Consensus pattern (24 bp):
TTCAAGAGAAGATAGTTTACCGAT
Left flanking sequence: Indices 1039889 -- 1040388
CCTTTTTCTTTATCAGAATGATGACTAAACTTCGGCGCATGGATGGTTTTGTTTTCATGGATGTT
ATATACCTGAAATGTATTCAGATTTCACGGGGCGGAGTCTTCAAAGAAATTGACTGATGTGCCAG
GGATGTCCCACCACTTTTGACATAGACTCAGATATAAAACGTTTTGATCATTATATAGATTTCTG
ACTTAATAATTTCAACAGTTGACAAGTCTAATAAAAGATTTCAGCAATGTCACAGGATGAATATA
GCCTTTGAAATGCAATGAGGCCCTTCTCCTCTTATTAATCTTGTCTTTCTCGCTTCGCGCCTTCT
CTTTCTCTTATTAATCTTGTCTAGTGGTATTTTATTGAGTGGTACTTTAATTGTCTAGTGGTACT
TTACTTGAAATCTTTGTTCATAAAAGCAAGCAACATATGTCTTTTTGAGATATGTAGTATGTCTT
TTTGAGATATGTAGATAGAAGACCACATACATTTCTATGTATCTG
Right flanking sequence: Indices 1040437 -- 1040936
CATTTTCTAACCATTTTCGGCTACTTTCCAGAGTATAGAAAGAAGAGAGTACATAAAAACGATGA
AAATCAGAATGCTGAGAGAGACGAGCAAGAAAATCTCTCAGGGATGCCATAGAGAGGGATGCTGT
GACAAACTCTCTGATTAACAAAGCGGAGAGATCCTTACTAATGGATTCAGAAAAATGCATTGGTC
TTCCAAAGAGTGCCATTCCAATGCTTGAGTAACAGAAGATATCGAGATAGGAGTGACCGCTACAC
CCAGCCAACTAACTTTCTCTTGACAAAGAAAAAAGCTTGTCACTTTTCTCACGAATACTCTTACA
CACATAGAGTCTATCATCCTTCGTCACAGAAGAGTACCTTTTTGACCTGTTTGATGTAATTCTGT
CTTCGAAGAACAACCAAAGAAGAAGTATCCAATCCATCTAAAATAGAGCACTATCACGGTGCGAA
CTAAATAGTGGTTGGTCTCATCAAGAATGAAGATTTGGACTCAAC
Found at i:1043242 original size:11 final size:11
Alignment explanation
Indices: 1043226--1043259 Score: 68
Period size: 11 Copynumber: 3.1 Consensus size: 11
1043216 TGGGCCTATC
1043226 TAGTTTGATAT
1 TAGTTTGATAT
1043237 TAGTTTGATAT
1 TAGTTTGATAT
1043248 TAGTTTGATAT
1 TAGTTTGATAT
1043259 T
1 T
1043260 GAAGCTGCAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.26, C:0.00, G:0.18, T:0.56
Consensus pattern (11 bp):
TAGTTTGATAT
Left flanking sequence: Indices 1042726 -- 1043225
ATGGATCCACCTCTGACTTGGGGAAATTTAGTTGACAACAGCTGATTTGAGTAAGAAGTCGACAG
ATGGACTTTAGAGGTACAAATATCTGAGGAGTATGAAGGAAAAGTGTGCTGGCGCTGAGAGGTGG
AAGTTGGAGGCAGAGTGGTAGTCGGAGCACTGGAGAAAGGCATGGTGACGAGTTTCAACTTTTAA
GGAGAGCACAGCTCTGGTCTTGCTTTTCTTTTCTCGAATGGAACATGCTAGGTTTGGTTTGAAAG
AGAACGGACAGGAGTTGTGAGAAGAAGAAGGAGGCGATCAGAACGAAGCTCAGCTGCGCCGCTGA
AGAAATGAGAAATGGGATTTAGGGTTTCTCTCTCTGTGCTGGGGCGCTTGCCTTTTTATTAGCTG
GAATTCTGACACAGAGGCCCTTCCTTTTTTTCTTGATTTTATTTTGATGTTTCTATCCCTATTAA
GTTTCTATTACGTCTGTTAAGTAGCGGACCCTTATTGGGCCTATC
Right flanking sequence: Indices 1043260 -- 1043759
GAAGCTGCATATGTATAAGACTGAAAGTTTGCAATAAATTAGCCCACGGGCCTTTTCCTCAAAAA
AAAAAAAAAAAGAATTTCACTAAACTAATTAAGTTAATGAAGTTTCAGAATACGATGTATTTGAA
CTATTTCGAAAAGTTTCCGCCCCTCGTGAGGTTCTTGGCTAGCTATCCATCCACTCGAGGAACTA
TAGCTGCCCTAGGAACTCTAGCAAGCTACTCTTTTTCTCTTATCGCTGCACTTTCGAAAGCAAGT
ATCACTTTGGCTATAGGCTGGCATCAAAAAGTTTCAATGGAAAAGTTCTGTATTAGGGAAAATAG
CCATTATCACTTTGGCTATAGGCTGGCATAAAAAGTGCATTTGCAAAATGCACTTACTGAGGGCA
AAGTGGGTTTCTTCCTTTTCTCGGTAGGGAAGTATCAAAAGTGGCACTTTTCAAAGTGTCTTACT
GAGGGAAAAGAGAGATGCTCACTGTAGAATGAGTTATATGAAAGA
Found at i:1044614 original size:12 final size:13
Alignment explanation
Indices: 1044595--1044627 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
1044585 AAGCTGTAAC
*
1044595 AGAAAAAGGAGAA
1 AGAAAAAGGAAAA
1044608 A-AAAAAGGAAAA
1 AGAAAAAGGAAAA
1044620 AGAAAAAG
1 AGAAAAAG
1044628 AAAGGAATAC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (13 bp):
AGAAAAAGGAAAA
Left flanking sequence: Indices 1044095 -- 1044594
GAGCTCGTTTGTTTTAAGCATACAAATCAATTCCCTACCTACATGTCTTCCGCATAATCAGAAAT
GTAGGTAGTTAGTCACAGCCGTCGATCGATCGGATAGGGCACAGCTCTCCTCTCATTCACAACGT
AGGGCAAGGGAAAGCAGCAACAGATCATATGTTCTTGGTTCACACCTTTCATTACAAAGAGCAGA
CAATAGGTAATGCTCTGTGTGGAAGCAAGCTTTATACAAAAATGAAAAGAGTGACAAATAAATAG
AACGAGAATTTCTGTTATCCTTTTATCCAAAATTGGGTATCACCAATTGCAGTTGAACTGTTCAT
AAGCAGTATTTGAATTCCTAAAAAGGATGGTGGGAAATCCCGTACCAGTCATGAGCAGCACCGAT
AAGACCTCGATCATAAATCACAGGCAACGTGTTGGGTCCACTTATGGGGACCACATTCATCACCC
AGCAATCGAGCTTTTGATCGATTAATGCAGCAGCAAAGCTGTAAC
Right flanking sequence: Indices 1044628 -- 1045127
AAAGGAATACACCAGAGAGTAATGACTACTCGTTCAATGAAGACGGAATCAGAGCATCAAAATGA
GACGAGCGAGCACAGAGGGGAAAGCACAAAACCTGCCTAGGCATTTTGACCAATCTTTGACTAGC
TGACTCTTTCTCGACCTTTTCTCCAGAGAGTAAGTAAAAGCTTTTGGGATTGTGCCTAAAGACGA
TCTCCCACTTGGAGTGGACTCTTGAGCAAAATTTTGAGAATTCCACGGAAAAATCATAAATAGAG
GAGAAATGGTGAGATCTACTTCAAATGCAAGAATTGCGGTCTCTACATACGGTTTTTCTTTTTAT
TCTCCTTCTTTTTTCTTTTACCACAGACTATTATTCTATTCTAAGCCGGGCTTCAGCCCGTATGA
GCAGATAAAGATTCCTCAGCATACCTATGTATGCACAGGAGCAGTAATTCCTAGTAAGTATCGAG
CTTGGAGTTTAGGATCTGCCAGATCATCTCTAAGATGGAAGTGAT
Found at i:1047804 original size:24 final size:24
Alignment explanation
Indices: 1047772--1047817 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
1047762 CTTATTAGTA
1047772 GAATCAGAGCAGAGGATTGAATTC
1 GAATCAGAGCAGAGGATTGAATTC
1047796 GAATCAGAGCAGAGGATTGAAT
1 GAATCAGAGCAGAGGATTGAAT
1047818 CGCATTTTGG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.39, C:0.11, G:0.30, T:0.20
Consensus pattern (24 bp):
GAATCAGAGCAGAGGATTGAATTC
Left flanking sequence: Indices 1047272 -- 1047771
CATCACTTGCCAACCAAAGTAAGCACCTACTCCAACAGTAGCATTAAGAGTAGCAGAATAGAATG
GAGCAACTAGCTTTCTCTAGTCCTAGTTTACACAATAGAATAGAAAAACTACTGACTTCTTTTGA
CCTTTGATCATCTATCCGGTCCTTGAGACTGGACCTATATATCTAAGGTAGAGAGAATTGAATCA
CGGAAGCCTAGCTTTCTAATATCTTCCTTATCGGAGTGCAATGTCTAATGGAAATAGTTTCAAAC
GTTTGGCTCAAAGAGAAGTCAAGTACCTAACTTCCAGGCTTACCTAGAGATTGTATTAAAGCGGG
CTTGCCTAACTGCTCTTCTTTCCCAGACGAGCGAGACGGATTGGATTGCGTTTTAGTTCGTTTGC
CGCTTGCAATTGATTAAGTTACATTACCTGCTGCTCCGAGCATTGAACGAATGAATTAACAGACT
TATTTGGGAGTGTGTACTACTTATTGGAGTGTTCCCTTATTAGTA
Right flanking sequence: Indices 1047818 -- 1048317
CGCATTTTGGGGGTTGAGCTTTTTCATAGGTCTATCCTGTTCTTTGGCATCTAGGATTGAAGAAA
GGGGGGATTTCCCTCCTTTTATTAGGAGTTAGTTCCTTTTAGTAGTTGCCGAGAGTTCATCGGTA
ATAGAGCCGGTATTCTTTACATTTGATCTCTTTGTTTCTAGATTTCAGACTTGAAAGACAGGTTC
CACTGGCTTGAAAGAAATAGGAAATGCTATCGATTTACAACATTTGTTGAGAGTAACCAACCGTT
TATTTGCTCAAACTTTTATTACCAACGCTCATTTACTGCGCTGCCTCACGCCGAGGATATTGGAT
ATTGGCTGGTGCTTTTTTCTGACCTTGCTGCAAGTCGTCTTCGCCATGTATGCCACATTCCTCCT
CTACTACATGAGCCCTTCGGTCGATCTGCGCACAAACCCGACTTCTCGTGGGCCAGCCGAATCGC
TCACCTGTGGGAGCATTTCAGCACTAAACCCCACATGCTGTCTAC
Found at i:1084721 original size:13 final size:13
Alignment explanation
Indices: 1084703--1084728 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1084693 GGAAGACCAA
1084703 TGAGAAGTTCAAG
1 TGAGAAGTTCAAG
1084716 TGAGAAGTTCAAG
1 TGAGAAGTTCAAG
1084729 GTTCACCGGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.08, G:0.31, T:0.23
Consensus pattern (13 bp):
TGAGAAGTTCAAG
Left flanking sequence: Indices 1084203 -- 1084702
TTGAACTGCCTTTCTTCACCTACGGGAAGACCAGCTCACTCACTCTAAAATACCACTACGTTGAC
TTTTGACCCTTTTCCATATCTTATTCACCTTGGCTCGTAACCTTTGACTTTTGCTTGAAACATGC
TACTCGTGGTACTGTTTACCAGCTCTACTCCCATCCTTTGGACCTAAAGTTTGGTGCGGAGATAC
GCAATGCCACTGATGAGATGTCCTTAGACAAACCAAAATAGACCCTCAGTCAGAGATGAATTCTT
TGGTTCATTTCATACTATTGGAGTTACCTCTTTCCCAACACCACCCTCCTTGCTGTGCCGAAAAC
TACATCGGGCCATTGTCCTATTGTGTGTGAGGCTAAGGAGCTCTTATAAGGTACAAGACCTTTTT
CTTTTTCTTTCTTTTTGTAAGGCGCTTGGCCAATACGGTCCTGGAACCAAGCCTCCCACCCTGTA
TGAGTACAGGGAGCCGTTGTTAAAGAGACAAGTGGGGAAGACCAA
Right flanking sequence: Indices 1084729 -- 1085228
GTTCACCGGGATTGGTGGAAAACCCAAATTGGTTGTACTATCATGCATGACGGATTCATGGACAG
ATCGGAGAGGCAGAAGCCTAATGAATTTGTGTGTGAATCGTGAGTTGGGTACTTGTTTCCAACTA
GTTGTTAATGGCTCCGCTGATACTCATAGTGCGGAGTATACACTGAAATTTGTTGAGAGTGGAAT
GCGCCGATGCCGGGGTGGAGAATGTTCTTCATGTAGTAACTTACAATGCCTCGGAAAACCTAGCT
GCTGGTAGGTTGTTGATGGAGGAATATCCCCGAATTTCTTGGAATGTGCTGCACATTATTGCATT
GATTTGATGCGTCAGAAGGCAAGGAACCCCGAAGAAAAAGTGTATTGGAAAAGGCCAAGACAGTT
ACCTCTTTCATTTAGTTCCATCACAAAACACTTGATTTGATGCGCTCGTACACTGAGAATAGAGA
ACTTGGTGTTAGCAAGGAGAACCTTTAGCTTCTATTATATTAGTA
Found at i:1101895 original size:23 final size:23
Alignment explanation
Indices: 1101869--1101912 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
1101859 AGATGGGATG
1101869 AAGGCAGGGCTGTAAAGCCGGGA
1 AAGGCAGGGCTGTAAAGCCGGGA
*
1101892 AAGGCAGGGCTGTCAAGCCGG
1 AAGGCAGGGCTGTAAAGCCGG
1101913 AAATAGAGTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.27, C:0.20, G:0.43, T:0.09
Consensus pattern (23 bp):
AAGGCAGGGCTGTAAAGCCGGGA
Left flanking sequence: Indices 1101369 -- 1101868
AGATTGTAAGAGCAAGTGATGAGAGAGTTAACCGGTTACAAAAGCAAAATTGGCACATATTCCAA
AAGATCTCTTGTCCTTTTAGCATTATAGCGGCAAGTAGACGTACGTCCTGCGAAAAATACTCTTG
TATTTCTTTTTCCATACTGGAAAGCATATCCACTGTTATATCTTGATGTGATAACCTTTTGTGCC
TAGTTCTGGGCACATATTACTAGCTAGCTCCATTAATGACGAAGGTAGTAGTAACATAGAATCCC
TAAAGATCCTCTGAGGCCTCTCCCCTACGACTCTGGACCAGCAAGGAGTTCCGCAGGAAATCTGT
ATACGCGCGCCCGCAGTGGGAGGAGTGTCAAGAAGTTTGAGGTGAAAGTCTTTGATTTGAGCACG
TGGCATATCTTCCCGAAGCAAAGGGACTCTTCTATCTAGAGGCGAGTAAAGAACTGATCTCAGGG
GAAGTGGCTTCCGTCATAGACTAGCTCGAAGTTAGAGATGGGATG
Right flanking sequence: Indices 1101913 -- 1102412
AAATAGAGTTTTCTTTTATTATGCCTATTTCTTGGTTTTGAGTATAGTTCTGAAGTGATAGTCCT
GAATCGGTAAGAAAGCGACTCCCTAGTAGCTGCTGAAGAAGCTAAGAAAGAAGCCAAAGAATAGG
TCAAACATTGGAAAAGCTCGATCAGAAGGATCGTTGGCAATTGTTTTGGAGAAATCTCAAAAGAG
AAGATACCCTTTTTGTAGGAGGGATTCCAAGTAGCAGTGTGTGGCTGCTGAGAAATCTGAGTCGT
TGATCAATTACCATGCTGTGTCTGTATGGCTAACTCCTCCCAGTATCTCTTGGCTTCATTTCCCT
GTCTACACAAGCATTTGATTATATAAGGACGGCGATCGAACTCAAACCTAAAAGAAACTCAAGCA
GTAACGGTCCACAAAAGAAAGGATGAAATTCAATAAGTACATCATTGTCACGAGTCAATTTTGAT
ATACTTGTGAGGGAACATGTCAAACAGAAAAAAGATGAAAAGCTC
Found at i:1110179 original size:17 final size:17
Alignment explanation
Indices: 1110157--1110190 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
1110147 GCTATTTTTG
1110157 GTTATGTTCTGCGATAT
1 GTTATGTTCTGCGATAT
1110174 GTTATGTTCTGCGATAT
1 GTTATGTTCTGCGATAT
1110191 ATATTATTAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.18, C:0.12, G:0.24, T:0.47
Consensus pattern (17 bp):
GTTATGTTCTGCGATAT
Left flanking sequence: Indices 1109657 -- 1110156
TAGTTTCGTACGTAGCTTTGAATTCCTCCTTCTCCTTATCAGAATTCCAGTAAGCTTTCAAGAGC
AGTTAGCAGTTCTAGAAGCAGAACACCATAGGCATATATGTCCGACCTGTTCCACATAGTTTCAT
AGAACTAATGACCCATACCAGCATCAATATAGTAGCTGTTTAGTAGAATTTGCCTATCTACCAAA
GCCGGTAATAGGAAAAGGATTCCAATGCAATGGGCTTTCCCTTGCTTTTTTCTTATGTATCCTAG
CGCTCTAACTGCCAAATTCCATTTTCATGCCGCCGTACATTATATTTGCATGTCACAGTACCGAC
CCTACCTACCGAACTGTGTCAGCTTACTGACTAGACTCTTTGACAGGCTTGGGAAAAGGGCACTG
GGTTAACAATGATACCCCCTCCTCCTTATATCTTTTTTCTCAAAGCTTGACACACCTTGGGCAAG
GCTGGGTTTCGCTTCGATTCTGTATGGTTTATAGCGCTATTTTTG
Right flanking sequence: Indices 1110191 -- 1110690
ATATTATTAGGTATAGTTACTCACTTAGCTAGCCCTACTTTCTTCACCGGTAAGAGGTGCTGCGC
GTATCGTCCAAAGCGCTTTGTGCGTTCCGGGCAGTAAGTAATAAGAAGCTACGCTATTGTTGTGA
AAGTGCGCTTTTCCCGTGTCTTCCGATGCGTTCGCATCTTCATATTATGATGATGATGATGAACA
CTCACTCAGTCGCTGATCGTTTCAGTTCTTGCTATCCACGCTCCAGGGCCGGCAATCACATAATG
AGTAGATGCAATCATGGCTATTCTTCCTTGCTTGGTCTCAAAGTCTGGATACTATAAGATTCAAT
TTTCTGGGTTTTGAATTAGATTGGATAGAGAGGCAGGGAAGAAGATGACATGGTGAATTTCTTTC
ATTTGAACAGATTCTCTCTGAACTTGGGTTGGGATTTTTCTATATAGCATATTTTCTTCAATAGA
AAGAAAAGCTCAACTCTGACTGGGTAGTTTTCCACTTTTCTAGTT
Found at i:1118410 original size:39 final size:39
Alignment explanation
Indices: 1118360--1118434 Score: 141
Period size: 39 Copynumber: 1.9 Consensus size: 39
1118350 ATAAGGGAGA
1118360 GGCACCAGCGTCCTATACCGTAAGTAAAGTCACGAAAGG
1 GGCACCAGCGTCCTATACCGTAAGTAAAGTCACGAAAGG
*
1118399 GGCACCGGCGTCCTATACCGTAAGTAAAGTCACGAA
1 GGCACCAGCGTCCTATACCGTAAGTAAAGTCACGAA
1118435 CTTTGCTTGC
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 35 1.00
ACGTcount: A:0.32, C:0.27, G:0.25, T:0.16
Consensus pattern (39 bp):
GGCACCAGCGTCCTATACCGTAAGTAAAGTCACGAAAGG
Left flanking sequence: Indices 1117860 -- 1118359
TAGTTAGGGAAATAGTTGAAGCCGCCATCATAGGCCAAAACAACCTTGTATACCTCTTATATATA
TAGCATACCCGATTTTATGCAATGTACTCTATATACATACACTCGTACCTTTTTTGACTTATCAA
GAGCTCTTTCGGGTCCAGTAGAAGAGTAGCCTAGTTCGGCATTGCGCCTGTGAACGAACCTAGCT
GATACTATGATAGCGATAGCACGCGCCGAATTTTGCGGGTGATCATCTCATATGAGAATATAGAG
CCTCGATTAGATAGTCGTCTCGAGGTAGTCCTCCCTTCGAAAGGAAAGAACAATGGAAGGCCCAA
CGAGATACACTGTATTTAGAGCCTTGCGGGGGTGTAGATACGGTAACCTACTCCGTATAGTATTT
CGGGCAAAAGGTGCTACTCTTTTCACCAGTCACTATTGTCACTTGACCAAAGAGGCCCTGGTTAC
GTACGTTATTTCTTTCAAAGCAGACCAATTTAGTTATAAGGGAGA
Right flanking sequence: Indices 1118435 -- 1118934
CTTTGCTTGCTACGTTAGGTAAGTAGCTTGCCTGGAAACCGTGGTACTTGTACTTGGGTAGGTCG
GGGGGGGTTTGACACATAGGAGAGTTCTACTTATTTTTGAAAGATTCCTTTCTCAGCATATATTG
ACTTTCTCAATTCTTTCAATTGCTCATCATGCTTCTGTACCTGCTCCTTCGAATAGCAGACACCA
CTGGGTAGGGCTAGGGCAGGGCCGACTCCAAAATACCCTAACTCAGGCGCATCCTGAATCTCCTT
TGCCAGCCTTCTAACCTGTAGTATTGTCTCTTTCAACCTGTAGTATTGTTATGGTACATAAATAA
GGTGCATGATAGATAGAACTCTATCGACTGATATTTGTTGGCTGCTTAAGGATCTTGTGTGCTCT
ACGAGTATAAAGAATTTGAAACTAGTAAAGTTATCCATGTGCAGAAATTGAATGACTACTTTGAC
CTGGCCCCAATTTGACGAATCCCAGTACGTTGCTTTCCCGTAGAA
Found at i:1133466 original size:30 final size:30
Alignment explanation
Indices: 1133432--1133491 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 30
1133422 CTTTATTCTG
* *
1133432 TTGGTGTATTTGGTCTGTCCATTCGCTATA
1 TTGGTGTATTTGGTCTCTACATTCGCTATA
1133462 TTGGTGTATTTGGTCTCTACATTCGCTATA
1 TTGGTGTATTTGGTCTCTACATTCGCTATA
1133492 GGAGAAACCG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.15, C:0.17, G:0.22, T:0.47
Consensus pattern (30 bp):
TTGGTGTATTTGGTCTCTACATTCGCTATA
Left flanking sequence: Indices 1132932 -- 1133431
TTATCTCTCTGAATTAGCCTTAATGTGGTCCTCATATCGTACTACCCAGAGATCCAACTGCCTCA
TTTCCTAAAGTCAACAATGGTCCTTAGTAATCAATGTGGCCCAATTCACAACGCTCTTTCGGCTC
AAGGTGTCAGCAACGAAACGACATTTCCCTTCCCGGGCATTAATCGCTTGAATAAGCAAGTAGCA
ATAGCTGATTCTTTTCAATGGCTTGGTAAAGTTTAGTCAAATGAGTGAAAGAGGATAGGCTAAGG
AGGGTAGACGGTTCATTCATTGAGGCAACACTTTCGATTTCAGAGCTCTTCCTCATCTGACATAC
TACCTAACTTTGTATACTGAGATTACGAAGCAGAAGCTGCCTTATCTGACAGACTTCCTTATCTC
TGGCTTAACTGCATCTGTCCTGAATTTCACTCTTTCGTACTTCATTTTCAATTGCACTGAAGTTC
ACTAACAACTCTAAGCATACTAAAACTCTGTAGTCCTTTATTCTG
Right flanking sequence: Indices 1133492 -- 1133991
GGAGAAACCGTAAAGAATCAAGAACCGAATTCATCGTAGCAAAGCAAAGCCATAAGGAATGCGTG
GTCATCCACATTGGGAGTGACGTTGAAGAATATTCGTCTTTACCCCAGTAACCTGAGGAGTCCGA
AGATAAAGGCTTCCCTCAACAGCTTCTGATGATTAACTTGCAAAACCCATTCTTGCAAAGAGCCT
TTTTTCCAATCCGGACAAAATCGTTAGCAAATCATCCCTATTTGAGGAAAGTGAGACAATAGCTT
CATTGTTAGGATGGGACGGATAGAGTGCCCTTCTCCTCTCTTGCTTGTCCGAAGACTGGTCTCCA
ATCCACTGACTCGCGGGAGAGTTTGGAGGAAAGAAGAGCTATTAAATCGAAGACAGTAGCACCCG
GAACTCGAGTAGGAGATAAATATAGCGTTGACTCAAACCGGTCTGAAGAGGAAGATATTCCCCGT
GCCTCTTCCTAAGGAACTCCTCCAACACTGAAGCAGTGAGGAAGT
Found at i:1144081 original size:15 final size:15
Alignment explanation
Indices: 1144061--1144090 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
1144051 CATGCTACTT
1144061 CAACTATATGCTTAA
1 CAACTATATGCTTAA
1144076 CAACTATATGCTTAA
1 CAACTATATGCTTAA
1144091 TAGGTCGATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.40, C:0.20, G:0.07, T:0.33
Consensus pattern (15 bp):
CAACTATATGCTTAA
Left flanking sequence: Indices 1143561 -- 1144060
TCTCCTTTAGAATTTTGAATGCATTTTCAAGCTTCTAGGAGCTGTTTTTTTTTTCTTTTTTGTGC
TAATTCAACCATAGCAAACTACTCTGCATTTTCTCATATTACGTGTATTTCTTTTGGTTTCAGTT
CAGGAGAAGAGCCGACCAATAAGGATAGGCGGTTAGAGCCAAGCGAACGGTAAGAGTGAGCCTCA
GTAAATAAGAAATGTCCGGAAGAGCATGTGTGTGCGCATATAGTTAGCGTTCCTTCCTCTTAAAT
GATAATATGTTGCCTGTTGGTTCCATTCACTAGATACTTGAAGTCGGCTTATGTGATATACTTAA
TCAGCAATTCCCCTCGCTTTGACTCGTAGGCTGATAGAATTACTCTAAACCGTGGAAATTTCATA
AAAGAAGCAAGATCGTAGCATAGACAGTCTTGCTTACTATCTCCTCCATCTAAGTAAGATGGGGT
TGAAGGTAGTAGCCTAAGCGCGTTGAAGCTGAAATCATGCTACTT
Right flanking sequence: Indices 1144091 -- 1144590
TAGGTCGATAAGCTTTGATTTGAAAAGGGGCTGATTCCACTAAGTCCCATATTGAATTGTTTATT
TATTAGTGTGAATAGATTGACTCCCCCTTTTCCGAATGAATATCATAGATAGCGCATTTGCAGTG
CGGGAATTACTTGTCAATGACTTGATCTTTCCCACTTGAATACCCGTTCATAGATGGGGGAATCT
CCAACTCTTACGTAAGTGAGTGTGGACTCTTTGACATATTGCCTGAGGTCCCAGACACAAGGTTC
ATTAACCGGCTAACCTATTTATGTGTGTGAATTACCTGGCATTTAACAACATCGGACTCCATTAT
TATAGATTGGCTTATTTTCATAAGTGGTTAGGGCCCGCCCGGACTTAGTTCATTGGGATTTATTT
CCTAGGCCAGTTCATTACTGGAATAGCACTATTGTATGGGTGGAAGATAATCTCCTTTCACATAG
AATCAGAGTCAGTACATTGAAGTTTGTTCCGCTCTCATTGAACGA
Found at i:1144989 original size:26 final size:26
Alignment explanation
Indices: 1144953--1145005 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1144943 CTTGTTTATC
1144953 TAGCATTTCCTCACTCACGGATTAGG
1 TAGCATTTCCTCACTCACGGATTAGG
* *
1144979 TAGCGTTTCCTCACTCACGGGTTAGG
1 TAGCATTTCCTCACTCACGGATTAGG
1145005 T
1 T
1145006 GATCGTGTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.19, C:0.26, G:0.23, T:0.32
Consensus pattern (26 bp):
TAGCATTTCCTCACTCACGGATTAGG
Left flanking sequence: Indices 1144453 -- 1144952
CCCGGACTTAGTTCATTGGGATTTATTTCCTAGGCCAGTTCATTACTGGAATAGCACTATTGTAT
GGGTGGAAGATAATCTCCTTTCACATAGAATCAGAGTCAGTACATTGAAGTTTGTTCCGCTCTCA
TTGAACGAATGAATTACCCAGGGTGCCCCGCCGCCCGGTTTATATAATTCTAAGTGAGTGACCTC
TAAACTCCGAGGCGAGTATTTATTAGAACGCCGTGTTCATCTCAACTATATTATATAGCCTTTCT
TTGTGTTAATTTCCTGGCTGCTTTTAGTAGTTCATCACCTGACTGACTGAAAGAATCTCCTGGCC
GGTGGATGAGTGCCTTTTATTTAGTCATTTCCTTCCAGGGTATAACTTCTCATTCCACTCTAGTT
CATTTGATAGGGGAGACCTGGCATTTCCAATTTGATATTAAGCGACTTACCTGGTATTTCTGTAA
CTTCGAGGGAATAGACAAGCTAGAAAGGGGCCCGGCTTGTTTATC
Right flanking sequence: Indices 1145006 -- 1145505
GATCGTGTATGTTAATTCAAAGAATTGCTGCCGAGTGACTTGCTTGCAAAAAGGCCTATCTTGTA
TGTAAGCTGCTAGAAATCCTTCCGCGCCTCTTTCTTTTGTTATATAGAAAAGCGCACATTCCCAT
TGTATGGATTGCACAACTCGGATTGCTATTAGTAAAACTCTGTGCTGAAAAGCGAGTTTCAGTAT
CAAAAAGTCCCGAGCAAGAGAAAAACCCATTCGTTCTCGTACCTGGCTGGCTGTGTTATTGTTCA
CACTGTTACATATTTGAACATGCTCATTTCAAGCTCCTCTAGGAATTGCATTGCTTTGGCTGGCA
TATTGCCCTAATTCCCATACTTATATATAGTAGAAAGCCCTAGCCCACTTGGAAATGCCCCGAAT
CGTTTAGCATCTACCCCTCCCTATAGAATTGAACTGAGCCCGGGGTTGGGTGGGTGCGTGTTCAT
TTTCTCACCTATTTGTTTGTTTGACTAGATTCCCTTGCGCTTGGC
Found at i:1170996 original size:24 final size:24
Alignment explanation
Indices: 1170951--1170996 Score: 56
Period size: 24 Copynumber: 1.9 Consensus size: 24
1170941 CTCTCATGCC
* **
1170951 GTAGTTCCTCACTGAGTGAAAAAG
1 GTAGTTACTCACTGAGCCAAAAAG
*
1170975 GTAGTTACTCACTGGGCCAAAA
1 GTAGTTACTCACTGAGCCAAAA
1170997 TCTTGTTCTG
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 18 1.00
ACGTcount: A:0.33, C:0.20, G:0.24, T:0.24
Consensus pattern (24 bp):
GTAGTTACTCACTGAGCCAAAAAG
Left flanking sequence: Indices 1170451 -- 1170950
AGGATAGTCCCCTCTCCATCACCTAGGCATAAATCAGGTCAAAACCAGATTGCTTGTCTGTTCGG
CATGAGTGATAACAAGAAAGAGTACTGTTGTCAATTTGTACATTTGCTTTGATACAAATATCCTG
GAAATTCTTTTTCAGCGTGCTGTTGCTTGGCCCCATGCATAATTCCACAATGCATTCAGGTCATC
AACGTACTCCCAAAAATACATAGGAAGAGTGCAATCAGCCTTGGCAAAAAGAACAAGAGAAAAAA
GGTACATAGTTCACATAGAGACCCCTTCTTCCGGAGTGGCAACAGCAGACTGAGATAACTCAGCA
AGTAATACAGCCGAAAACTCGTCCCACGAAATAGTTCCCTTGTTCGGGAAAAGCCGCCTTTTTTG
TTCGTAACAGACGAGTAACTACTACTTCTTTTGGTTCTCTTTTGTTAGGAGCAGTGAGCAACTAC
TAATGTTGCGAACAAAGGACACGTTCTACGTGTATCTCTCATGCC
Right flanking sequence: Indices 1170997 -- 1171496
TCTTGTTCTGCACTTGTAAAGTCTCTGAAAAACATGATATATCCCTAAAAAACAATAAATATCGA
TAGCACTTTGAATTTCTTTTGATTTTCTTTTTTCTTTGTCTCAGCCAGTCCTTGAGGAAGAAGAT
TGGGGTAAGCCAACCAATTGATCAGGTATACCAGACCGAAGGTGGGTGGGTGGCCTAGCCCCGGG
CAATAGAGGGAAAGGGCAAATAACTAAACCAAGTGCTGTCCGCTCGGACGGGATAAGCGTTCTCC
TTCCTGCATTTCATGTTTTGCTTATCGAGCCAATTTCAATAGAGAAAGTAAGGCGCTTGCGGTGG
GTTTTTGCTTTCGAAGTCAAAGAAAGACCCTCGTGAATTCACCTTTCGAACAGGTGGGAAGAATC
CGGAGATGAAGGCAGTGAAGTACTCGGCTACGTGGATGGGAATGGATAATGGGGATCGGGATGAT
GAGTATTTCTATATAATAATGAATAAGAAAATAAGAAGAGAGAGA
Found at i:1190163 original size:24 final size:24
Alignment explanation
Indices: 1190131--1190227 Score: 151
Period size: 24 Copynumber: 4.0 Consensus size: 24
1190121 CTAATGTTAC
1190131 GAGTTCAAAAGGTAGTTACTCACT
1 GAGTTCAAAAGGTAGTTACTCACT
1190155 GAGTTCAAAAGGTAGTTACTCACT
1 GAGTTCAAAAGGTAGTTACTCACT
* *
1190179 GAGTTCAAAGGGTAGTTCCTCACT
1 GAGTTCAAAAGGTAGTTACTCACT
*
1190203 GAG-TGAAAAGAGTAGTTACTCACT
1 GAGTTCAAAAG-GTAGTTACTCACT
1190227 G
1 G
1190228 GGCAAAGGAT
Statistics
Matches: 67, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
23 5 0.07
24 62 0.93
ACGTcount: A:0.32, C:0.16, G:0.24, T:0.28
Consensus pattern (24 bp):
GAGTTCAAAAGGTAGTTACTCACT
Left flanking sequence: Indices 1189631 -- 1190130
TTCGACCGTGTCTCCGGGGCACAGTTGAATGTAGATATCATGAACGCGAGGTGCCGGATACCAGG
CCGAGAAACCCGCGGGCAAATACTCCCCTTATGTGCCGATCACTAGCGCATCCCGGGTCCCGGCG
CCCAGCTCTGCTGGAGATGCCGTCACTGATCTCGTCTTCGGCCGCGTCCATAAAAAAACAAGTGC
TCCGCAGATCAGTGAAGAACCCGCAAGAAGATACCTCGGCGCCCGCCGCACTATGCTCCGCAACC
AAATGAGAGTTTTTCGGTGGAACCGGTGAACCGCGTGAGCTGCTTAGATGCGTGGGACAGAGGGC
TCGTAGTACCTGATAGCGCAGCGGAAGGAGCCTAAATCAACCATTAAAAGAGAAAAAAGCACAGG
GGCTCTCGGATGAGACTAAGCAGCTACCATTCAGACCGAAGGGACTTGACTTATCCGAACCACGG
CAGCCGGCTTTTCGTTCGTAACAGACGAGTAACTACTAATGTTAC
Right flanking sequence: Indices 1190228 -- 1190727
GGCAAAGGATCAAGCGCTTTGACTTTTTCCCCTGGTTGGGTTTGAGAGCCGTGTGATGGGTAACT
ATCCAGCACGGTTCGGGGAGCACTTGTATGTAGTCTGCGCTGGTGAATGGAAGCCCGCAAAAAAG
AAGCGGCTCAAACTGCGGCTCTGCCACCATTGACTCTATTTATTATTATGGTAAATCTGTGTATC
AAGATGTCAATCTGAGATCTTATTTTGGCAAAAGGGGCTTCTCCTCTTCTGCCAACAGCGGGAAG
AAAACCGCAAGGAAATTGAGCCCCCTAATCTTCAGTACGGTTGGGCTGTCGATTACGGTTTTAGT
TACCGTTGTCGGTTTCACGATCTTATACGCACTACCCTCTTCTACCTTTTCGTGTTTCCTGAATG
AACTGGTGAAAGGAGGGCTTCTTGCGATACTTAACTGGGTACAGGTTTTGTTCACTCTCGGTTTA
GAGGAGGCGCGTATTCGGTCGGGAGCGCCGCTTTTAATGAATGCT
Found at i:1199023 original size:27 final size:30
Alignment explanation
Indices: 1198962--1199022 Score: 88
Period size: 31 Copynumber: 2.0 Consensus size: 30
1198952 TTCTGCCGAT
1198962 AGAATAAATGGCTTGCTTGCTTACTACTAAG
1 AGAATAAATGGCTTGCTTGCTTA-TACTAAG
* *
1198993 AGAATAAGTGGCTTGCTTGCTT-TCCTAAG
1 AGAATAAATGGCTTGCTTGCTTATACTAAG
1199022 A
1 A
1199023 AGTGTTGCTG
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
29 7 0.25
31 21 0.75
ACGTcount: A:0.30, C:0.16, G:0.21, T:0.33
Consensus pattern (30 bp):
AGAATAAATGGCTTGCTTGCTTATACTAAG
Left flanking sequence: Indices 1198462 -- 1198961
GATAGACTTATTTAATAGTCTCACTTTCGCTCGACCCAGCTGACTGAAAGTCTAGCCTTTCATTT
CATTTGACGAGAGTTTCTATATAAGTATGCCATTTTTCTTGCTTATACGCTTATAAGGTTTCATC
TTGCTTATATAGGTTCTTTCATACGACTTTCTCGAAGCTTTTGGTTCGTAACATTAGTAGTTCCT
CACTGAGTTCAACAGAGTAGCACGCACTGGAAGGAATCGTTCCTCGCTCGGGTACGTATGTTGTC
TCAAGCCAGAATCTATGGTCCTGGTTCAAGTGGGCAGTATAGTTCTCTTTCGAATTGGCGGCAAG
CAATAGGCAATTTTCAAGTGAGTTGCTCTTTCTGTATATTTCATGGAACCTGATGCATCTTTCAA
AGGAGTTTTTGGGGGCGGCAGATCCAATTCAGAATCTCCGGCCTGCCTAAGGTCGTGGTAATTAT
CTGAAGGAGAGTAAGTCAGTTCTGTCACTCTTCCTTTCTGCCGAT
Right flanking sequence: Indices 1199023 -- 1199522
AGTGTTGCTGCTGCTTCCTTCCCGGACTGAGTAATAAATATGAGTTCGCGCGCGCATTGTCTGTC
TTTCAAGACCTAATAGTACGTCCGAATGACTAAGACGCCTAGTCCAGAGTGTGTTCTCAAATCCT
ATCCAGCGGGCAATAGTCAACTGAGCTTTGACTTTGCCCATTGATCATCGAACCTTTTGATATTC
TCTTATATAGTGTATTTTTGGCATTTGCTAGCTGATCTTTGATTGAGGTCTGAAGCTCTTCTGCT
TGCTTCAATCTATATAGTCTAGTAGCAATAAGCAAATAAGGTTACTCGTCAGAGAGAGTACCACA
CACTTACAGGCTCCTTATAGGATAAAAGACGCTCAAAGACAGAGAGGAAGAGGAACAGGAAGACG
AACGGGAAGAGCAAGAGCACCACTCTCTTTGATTACCCTTATAGGATAAAAGACGCTCAAAGAGC
AAGAGGACACACACACAATAGACAACTCTTCTCATGGCAGCGGCA
Found at i:1244567 original size:27 final size:27
Alignment explanation
Indices: 1244529--1244582 Score: 99
Period size: 27 Copynumber: 2.0 Consensus size: 27
1244519 AGTAATCTTG
1244529 AGTAATAGAAGTAGTGGCTGTCGCCCT
1 AGTAATAGAAGTAGTGGCTGTCGCCCT
*
1244556 AGTAATAGAAGTAGTGGCTGTCTCCCT
1 AGTAATAGAAGTAGTGGCTGTCGCCCT
1244583 GAGAAATCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.28
Consensus pattern (27 bp):
AGTAATAGAAGTAGTGGCTGTCGCCCT
Left flanking sequence: Indices 1244029 -- 1244528
TTCTGCCTCGCTTAATATAAGTATAAACAAACGAGTTGACATCCGTGGATAGTAACGAGGTAGCA
AGCATTAGTAGTTATCCTTTAGAGGTTTTGAACCTCTAAAGCGTTAGAAGTGTTCCATAATCCCT
TTACCTTGCTGAGGGAGCCCAGGATCAAAACAAGTAGTAAAAAGATCAGAGTTTTGATAGGTAAT
AAAGCAATGGACATCTGTATAACAGGAAGATGTTCACGAGCAGGAGTATCAAAATAAGCTTTACT
TCGTTATCTAAAAAGAGAGAAAGAAGGGCACTTTGAAGAAAGATCAGTTAGAAAGAGAAGTAGGT
ATAGTTCCTACGTAGGTGTTACCGATAGGAACGCAGGTGTGAAATAATCCCTGTTAACAAGAGAC
AAAGATAGTAGTAAAGAACTATAGGGCTTAATTGGGGGTAGTAGAGTTGTTTGCTTTCTCGAGTT
TCAGGTCAAAAGAGTCGTTTTACCAGTTTGTAAGAAGTAATCTTG
Right flanking sequence: Indices 1244583 -- 1245082
GAGAAATCAATAAGGAATATAGCTGTCGAGGAATTATTAACCCGTATTCCTAAAGTGTCAAAGTA
AGCTTTCCTTGGTTTCAGAAATCTATCCGTAGTGAAAAAAGAAGTGAATAGTTTGCCTTTGGAAA
AAGTATTCTTTACAAGAGCGAGCAAGTAAGGGTGTGCAATGCAATAAGAGTCGAATCTTGGATCG
ATAATAAGATAGAGCCAAGAGTAGAACTATTTTAGGAAGTATTCCGGTATAAAGGGTTTGCCCTA
ATAGTAGAACTTGTGTCACAGGAGGGAGCCAAGTAGAGTAGGAGTTCAAGATAAGGGAGTGTATT
TCCTTTCTCGGATGGATTTCACAAGACGAGAAAGACCCAGTGGTTTGAAATAATAATACAACCTT
GGTTAACGATAGAAAGCCAAGGAACAAGCAGTCAAGTGAGTAAGTAGAATTCCTCTATTCCTACA
GTTTGAGTTGTGAATAAGACCTAAAGAGCCACGTAACTAATAAAA
Found at i:1262074 original size:20 final size:20
Alignment explanation
Indices: 1262049--1262089 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
1262039 AGAGGAATAA
*
1262049 CAAACAACCCTTCTACTCTT
1 CAAACAACCCTCCTACTCTT
1262069 CAAACAACCCTCCTACTCTT
1 CAAACAACCCTCCTACTCTT
1262089 C
1 C
1262090 TCAATGCTCT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.29, C:0.44, G:0.00, T:0.27
Consensus pattern (20 bp):
CAAACAACCCTCCTACTCTT
Left flanking sequence: Indices 1261549 -- 1262048
TTATTCTTGCCATCTGGAGGTTATATTGGATTCTCTTTCACGTCAACTTTCCATATGTGTAACAC
ATGCGTTGGCTTGTAGTTTCTACTTTGTGAGCTCTTTTATCAGAAGATTGGAGATTCCTTTTTTC
TTGAAAGAAGGGATCAAACAATTTATTCCTTTGACCCGAGGAAGAAGCGTCTTTCCACGATGGAG
AATAAGCGCCGAGAAAAGCATAATGAGTCACTCTCATTCCACTAGCAAGACCAGAACCATTCCCC
GCACCTTCCTTTTTTCGATTATTCCCTGCTTTAGATTCACTATCAGCAGGAGTCCATTGTCATAC
TATACTTGCTCACCAGCTACTAATAAACCGCACTGTGGGTTCACTTCCAAGAATTCTCATCGTCG
TCAAGTTTTTCTTTGAAAAGATAGATAAAAGACAGAGTTCTCCCCTAAGGCTTAGAGCCAAAAGA
AGATAAGTAAAGCGGCGGAGTTCTTGAAGGGTTAAAGAGGAATAA
Right flanking sequence: Indices 1262090 -- 1262589
TCAATGCTCTTTACAAACTCTTGTGCCTCTTTAGGAACTGTAATGTGCTACAACACTGGGTCTCT
TACAGGCTGGAGGGATTAGTATTTTTTTCTACATTTCCACTCCTTTCTTCCCCTCCTTTTATGCT
CTGATTCAAGAAGGTAGGTCTATGGCTCAATGGTCTATGGCTCAATAAGGAATGCTCCGGATTCA
TGAAGGTAGATTGCTTCCCTCTCTGCTCTCTTTACCTCTATGCTCTCTCTTCAAAGCTCTTCTAC
GGAAGGGATACAAAGCAAAGGGATACAAAGCAAGAACTCCAGAGATCTCTTCTAAGGGAAAGGGA
AAGGACAAAGGAATTGCTTTGCTTCTCAGGAATTGAACGAACTACTCTTCTATGAAAGGTCACTA
CCCCTTTCTTTTATAGGAATTCACTAACACTATTCTCTTATTTAATAAACTACTCTACTCGAACT
CACTCTACTCGAGCTAACCCGTCTCGAAGAAAAACCCTACTCTCA
Found at i:1262256 original size:15 final size:15
Alignment explanation
Indices: 1262236--1262265 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
1262226 CAAGAAGGTA
1262236 GGTCTATGGCTCAAT
1 GGTCTATGGCTCAAT
1262251 GGTCTATGGCTCAAT
1 GGTCTATGGCTCAAT
1262266 AAGGAATGCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.20, C:0.20, G:0.27, T:0.33
Consensus pattern (15 bp):
GGTCTATGGCTCAAT
Left flanking sequence: Indices 1261736 -- 1262235
CGATGGAGAATAAGCGCCGAGAAAAGCATAATGAGTCACTCTCATTCCACTAGCAAGACCAGAAC
CATTCCCCGCACCTTCCTTTTTTCGATTATTCCCTGCTTTAGATTCACTATCAGCAGGAGTCCAT
TGTCATACTATACTTGCTCACCAGCTACTAATAAACCGCACTGTGGGTTCACTTCCAAGAATTCT
CATCGTCGTCAAGTTTTTCTTTGAAAAGATAGATAAAAGACAGAGTTCTCCCCTAAGGCTTAGAG
CCAAAAGAAGATAAGTAAAGCGGCGGAGTTCTTGAAGGGTTAAAGAGGAATAACAAACAACCCTT
CTACTCTTCAAACAACCCTCCTACTCTTCTCAATGCTCTTTACAAACTCTTGTGCCTCTTTAGGA
ACTGTAATGTGCTACAACACTGGGTCTCTTACAGGCTGGAGGGATTAGTATTTTTTTCTACATTT
CCACTCCTTTCTTCCCCTCCTTTTATGCTCTGATTCAAGAAGGTA
Right flanking sequence: Indices 1262266 -- 1262765
AAGGAATGCTCCGGATTCATGAAGGTAGATTGCTTCCCTCTCTGCTCTCTTTACCTCTATGCTCT
CTCTTCAAAGCTCTTCTACGGAAGGGATACAAAGCAAAGGGATACAAAGCAAGAACTCCAGAGAT
CTCTTCTAAGGGAAAGGGAAAGGACAAAGGAATTGCTTTGCTTCTCAGGAATTGAACGAACTACT
CTTCTATGAAAGGTCACTACCCCTTTCTTTTATAGGAATTCACTAACACTATTCTCTTATTTAAT
AAACTACTCTACTCGAACTCACTCTACTCGAGCTAACCCGTCTCGAAGAAAAACCCTACTCTCAT
ATGGAATCGGGAACTGCTTTACTCACCCTGTCTAATAAGGAAAAATAGACTCCCCCTGCAGTCTA
ACGAATAGATCCTCCGCTCAACCTATGCAAGGACCTATAGAAGAAGGAATAGGCTACTGGGAAGG
AATAGGCTACTTGAAGGAATAGACTAATACCCTGAACCACCCAGC
Found at i:1262372 original size:15 final size:15
Alignment explanation
Indices: 1262352--1262382 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
1262342 TCTTCTACGG
1262352 AAGGGATACAAAGCA
1 AAGGGATACAAAGCA
1262367 AAGGGATACAAAGCA
1 AAGGGATACAAAGCA
1262382 A
1 A
1262383 GAACTCCAGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.55, C:0.13, G:0.26, T:0.06
Consensus pattern (15 bp):
AAGGGATACAAAGCA
Left flanking sequence: Indices 1261852 -- 1262351
CAGCAGGAGTCCATTGTCATACTATACTTGCTCACCAGCTACTAATAAACCGCACTGTGGGTTCA
CTTCCAAGAATTCTCATCGTCGTCAAGTTTTTCTTTGAAAAGATAGATAAAAGACAGAGTTCTCC
CCTAAGGCTTAGAGCCAAAAGAAGATAAGTAAAGCGGCGGAGTTCTTGAAGGGTTAAAGAGGAAT
AACAAACAACCCTTCTACTCTTCAAACAACCCTCCTACTCTTCTCAATGCTCTTTACAAACTCTT
GTGCCTCTTTAGGAACTGTAATGTGCTACAACACTGGGTCTCTTACAGGCTGGAGGGATTAGTAT
TTTTTTCTACATTTCCACTCCTTTCTTCCCCTCCTTTTATGCTCTGATTCAAGAAGGTAGGTCTA
TGGCTCAATGGTCTATGGCTCAATAAGGAATGCTCCGGATTCATGAAGGTAGATTGCTTCCCTCT
CTGCTCTCTTTACCTCTATGCTCTCTCTTCAAAGCTCTTCTACGG
Right flanking sequence: Indices 1262383 -- 1262882
GAACTCCAGAGATCTCTTCTAAGGGAAAGGGAAAGGACAAAGGAATTGCTTTGCTTCTCAGGAAT
TGAACGAACTACTCTTCTATGAAAGGTCACTACCCCTTTCTTTTATAGGAATTCACTAACACTAT
TCTCTTATTTAATAAACTACTCTACTCGAACTCACTCTACTCGAGCTAACCCGTCTCGAAGAAAA
ACCCTACTCTCATATGGAATCGGGAACTGCTTTACTCACCCTGTCTAATAAGGAAAAATAGACTC
CCCCTGCAGTCTAACGAATAGATCCTCCGCTCAACCTATGCAAGGACCTATAGAAGAAGGAATAG
GCTACTGGGAAGGAATAGGCTACTTGAAGGAATAGACTAATACCCTGAACCACCCAGCCTACAGA
TACTTTCCTTGCCTTTTACCCGTACTCCTTGCCTTTTCCCCGAAACACCACTTAGGGATAAAGGC
AGGATTCTGACCTGTCCTAAGGAAAGCTTACCAGATCAAAAAGGA
Found at i:1262551 original size:15 final size:14
Alignment explanation
Indices: 1262527--1262556 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
1262517 TTATTTAATA
1262527 AACTACTCTACTCG
1 AACTACTCTACTCG
1262541 AACTCACTCTACTCG
1 AACT-ACTCTACTCG
1262556 A
1 A
1262557 GCTAACCCGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.27
15 11 0.73
ACGTcount: A:0.30, C:0.37, G:0.07, T:0.27
Consensus pattern (14 bp):
AACTACTCTACTCG
Left flanking sequence: Indices 1262027 -- 1262526
TTGAAGGGTTAAAGAGGAATAACAAACAACCCTTCTACTCTTCAAACAACCCTCCTACTCTTCTC
AATGCTCTTTACAAACTCTTGTGCCTCTTTAGGAACTGTAATGTGCTACAACACTGGGTCTCTTA
CAGGCTGGAGGGATTAGTATTTTTTTCTACATTTCCACTCCTTTCTTCCCCTCCTTTTATGCTCT
GATTCAAGAAGGTAGGTCTATGGCTCAATGGTCTATGGCTCAATAAGGAATGCTCCGGATTCATG
AAGGTAGATTGCTTCCCTCTCTGCTCTCTTTACCTCTATGCTCTCTCTTCAAAGCTCTTCTACGG
AAGGGATACAAAGCAAAGGGATACAAAGCAAGAACTCCAGAGATCTCTTCTAAGGGAAAGGGAAA
GGACAAAGGAATTGCTTTGCTTCTCAGGAATTGAACGAACTACTCTTCTATGAAAGGTCACTACC
CCTTTCTTTTATAGGAATTCACTAACACTATTCTCTTATTTAATA
Right flanking sequence: Indices 1262557 -- 1263056
GCTAACCCGTCTCGAAGAAAAACCCTACTCTCATATGGAATCGGGAACTGCTTTACTCACCCTGT
CTAATAAGGAAAAATAGACTCCCCCTGCAGTCTAACGAATAGATCCTCCGCTCAACCTATGCAAG
GACCTATAGAAGAAGGAATAGGCTACTGGGAAGGAATAGGCTACTTGAAGGAATAGACTAATACC
CTGAACCACCCAGCCTACAGATACTTTCCTTGCCTTTTACCCGTACTCCTTGCCTTTTCCCCGAA
ACACCACTTAGGGATAAAGGCAGGATTCTGACCTGTCCTAAGGAAAGCTTACCAGATCAAAAAGG
AGCGAGCCGGTTTTCAATTTTCGAAAATATCGGTTTCAGTGTTCTCGAGTAGGCATTTAAGCCTC
GCCTCAACCTGAAAAGGCGGTTTTGTCTACTTCCACGTTTTGATTGAACTTTGCCCGCCAGTGTT
ATGGAAACCTAATTGATGCCCACATACGAAGTTTTGTTGCAGAAT
Found at i:1262738 original size:17 final size:18
Alignment explanation
Indices: 1262698--1262742 Score: 74
Period size: 18 Copynumber: 2.6 Consensus size: 18
1262688 ACCTATAGAA
1262698 GAAGGAATAGGCTACTGG
1 GAAGGAATAGGCTACTGG
*
1262716 GAAGGAATAGGCTACT-T
1 GAAGGAATAGGCTACTGG
1262733 GAAGGAATAG
1 GAAGGAATAG
1262743 ACTAATACCC
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
17 10 0.38
18 16 0.62
ACGTcount: A:0.38, C:0.09, G:0.36, T:0.18
Consensus pattern (18 bp):
GAAGGAATAGGCTACTGG
Left flanking sequence: Indices 1262198 -- 1262697
TTTCTTCCCCTCCTTTTATGCTCTGATTCAAGAAGGTAGGTCTATGGCTCAATGGTCTATGGCTC
AATAAGGAATGCTCCGGATTCATGAAGGTAGATTGCTTCCCTCTCTGCTCTCTTTACCTCTATGC
TCTCTCTTCAAAGCTCTTCTACGGAAGGGATACAAAGCAAAGGGATACAAAGCAAGAACTCCAGA
GATCTCTTCTAAGGGAAAGGGAAAGGACAAAGGAATTGCTTTGCTTCTCAGGAATTGAACGAACT
ACTCTTCTATGAAAGGTCACTACCCCTTTCTTTTATAGGAATTCACTAACACTATTCTCTTATTT
AATAAACTACTCTACTCGAACTCACTCTACTCGAGCTAACCCGTCTCGAAGAAAAACCCTACTCT
CATATGGAATCGGGAACTGCTTTACTCACCCTGTCTAATAAGGAAAAATAGACTCCCCCTGCAGT
CTAACGAATAGATCCTCCGCTCAACCTATGCAAGGACCTATAGAA
Right flanking sequence: Indices 1262743 -- 1263242
ACTAATACCCTGAACCACCCAGCCTACAGATACTTTCCTTGCCTTTTACCCGTACTCCTTGCCTT
TTCCCCGAAACACCACTTAGGGATAAAGGCAGGATTCTGACCTGTCCTAAGGAAAGCTTACCAGA
TCAAAAAGGAGCGAGCCGGTTTTCAATTTTCGAAAATATCGGTTTCAGTGTTCTCGAGTAGGCAT
TTAAGCCTCGCCTCAACCTGAAAAGGCGGTTTTGTCTACTTCCACGTTTTGATTGAACTTTGCCC
GCCAGTGTTATGGAAACCTAATTGATGCCCACATACGAAGTTTTGTTGCAGAATTTCTACTTGTT
CCTCTTCTTCTGCTGGGTTCCTCTCAATCTCTATTTCCTGGTCAATTCTCTCCTCGTCAGAATCA
GTGGGATCTTATGATGAAATTCCAGCCATGGTGTGTAACCCTTGGCTGTTGCATTTATGGCCTGG
ATGGAACTTCGCACCGGACCTGAAGCAAAGTGCTATGGCTTTCTT
Found at i:1268026 original size:13 final size:13
Alignment explanation
Indices: 1268008--1268032 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1267998 TTTCATATAT
1268008 GATAATATGTCGC
1 GATAATATGTCGC
1268021 GATAATATGTCG
1 GATAATATGTCG
1268033 GTATCGTAGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.12, G:0.24, T:0.32
Consensus pattern (13 bp):
GATAATATGTCGC
Left flanking sequence: Indices 1267508 -- 1268007
TAAGCATCTTTCGTCTCAAATACCTCAAAAAATTGTCAAATACACATACCTAAAAAGAATGAATA
CACCTTTCTTTCTAAGAAGTGCTTACTACGGTGGTCGTACTGATGTATATATTCCATATGGAAAG
AAACTCTCTATTTCTTCGATGTGAACTCTCTCTATCTTCGAGCCTAGTTCCTGGTTCCCCTGAGT
CTTCCCCAGGCGCGCAGCGGTAGTTCCTTTTTCCCCTTCCCGATGTGCTTGCCCAGCTTCCTAGG
CTTTTCCTCATCAATGGTGGACTTCCGTAGGGATTTACTTAGAAGAAAATAAGATAAAGTGCTCG
GCTCATCCTGGTTCAGTTCAAAAGACGGGTATGGAATCCTTTTCACGAAAAGATGCAGTGCCCTC
ATATAAAGTGATCTATGCAAGTGTTCAGTGCTTCTCCCTGCACCGATTAGATATTTCAATGAAAA
TCCGAAACTCATTAAGTGAAAGAAATAAATCATCATTTCATATAT
Right flanking sequence: Indices 1268033 -- 1268532
GTATCGTAGTAGTGGGCGAACAAGCAACGGAAAGAGAGCAGTAGAAAGTCCTCTATTCAAACTGC
TTCAGAAAGATTCTTCTAATTAATAAGTGGACCCCAGAGTCCAGCTTTCTATAAGATCAAGACTC
GATCTTCTTCATACCCCAGTGCTAGTACCGAAAAGCCAAGGCCCTCCACTCGGTATGCGGAATAA
GTATTTCAAGTTAATTTCTCTCTATGGCGCGGAGGAGCGTTTTCAACTTATGGTTTGATGGGCCG
CGTTCGAGTTCAAAGCTGTTGCAAGCAATCAATCAAAGCGAGTCCCTTCTTATTTTATATAATCC
ATCTCGGGTCCTGCTTACTTCAGAAGGGGTCCCTCTCCTCACCTGCAGGTACCTATCTATGCCTC
AGGACCTAGTGAACAGCTTATTAAATATTCGGAGTTCTGGAAGAGCCGATCATAAGTTAGAAATG
TCTCTCTTTCCCTAACGTCGTTTCCGGGTTCAATGTGCCCGACAG
Found at i:1269026 original size:20 final size:20
Alignment explanation
Indices: 1269003--1269046 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 20
1268993 ATCTCACTAT
*
1269003 CTATCCATATATCTGTCTCC
1 CTATCCATATATCAGTCTCC
* * *
1269023 CTATCTATATCTCAGTCTCT
1 CTATCCATATATCAGTCTCC
1269043 CTAT
1 CTAT
1269047 ATCCCTTTTA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.20, C:0.32, G:0.05, T:0.43
Consensus pattern (20 bp):
CTATCCATATATCAGTCTCC
Left flanking sequence: Indices 1268503 -- 1269002
CGTCGTTTCCGGGTTCAATGTGCCCGACAGACACCTTAAGAACGAAGGAAAGCTTTCGGCCATGC
AGTGGTATTGCAACTGACTATACCATTACTATTCCTTCTCTTACTACTTTCCATTTCTATTGACA
GCTGTTGGGACAGGCTTGGCTCAGCTCAACTCTACCCTCTCGGACTATGCTCCCCTAGCTCGAAC
GTGAGTAGAAAGGATACCATCCGCAAGTAAGGTTAATCTTTTGAGATCTGTAGCGATGTGTAAGC
GAAATCATGACATTAGTGGTGGTGGGGTAATCGGAATTAGGTGGTAGTAATATATTAGGTGCCCT
ACTTCCATAATAACCGGGGTGGCGGTTTATGAGAGTAGATGCCCTCTATCTCTTCTATCTAACTA
CCAGTCTCGAGAACCAAATTGAATAGTAAAGTGTCGAGCTCTATCAAGGTTAAAGAGTACCAGTC
TATCTATCTTTCAACCTATCGATCTCTATCTCTCTATCTCACTAT
Right flanking sequence: Indices 1269047 -- 1269546
ATCCCTTTTAATTCATATCGCAGAATTGGTGAATGACTGGAGTTAGGGGAGAATACGGTATAAGT
GGAGTCCTAAGCAACAAAGGCTGGAACAGTCAAATCCCTTGTGGCAGTAGAATGACCAGCTCTCT
CTTCCGATTCGAATTCTGGAAATCATTCATCTAGATGCAGTCGAAACAAAACCTTGACGTGGATC
CTAGCTGTTGTGCCTATCAAATTGTTCGTGGCCTATAAAGGTGGTGTGCACGCTTCGTTCGGTAG
CACCTGCCTCCTTAGTAGCAGTGTAGTTGATAATAGATCGCCTGTTAATGAATAGGTCAATGCTT
CCATCCTTGGTTCCTAGTTACTAAATGAAATGCTGTTCAAGGCTTTCTATCTCACTCCATGTCTT
CCATCATAAACCATGTTGAACCTTCTACTATGTCGTGGCATTGAAATTCACTCTCCTTGGATTCC
GATACGCCAATCGCCTTGGCTAGAAAACCGTCTCGAAGTCAAAGA
Done.