Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_067943
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 816410
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Found at i:84101 original size:16 final size:16
Alignment explanation
Indices: 84080--84111 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
84070 TCATTCTCTA
84080 GTTGCCCTATAGTTGC
1 GTTGCCCTATAGTTGC
*
84096 GTTGCCCTGTAGTTGC
1 GTTGCCCTATAGTTGC
84112 ATTCTTAGCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.09, C:0.25, G:0.28, T:0.38
Consensus pattern (16 bp):
GTTGCCCTATAGTTGC
Left flanking sequence: Indices 83580 -- 84079
GCCGGCTTATTTCGCTCCTAAATGAATTTCGCCTTTCTCCGGAACGACTTTGACTTTTCAATCCC
TGACCTGAACACGGAAGCTTTCAAGCAGAGAGAGCAAGTAAATTCCTTCTATACCACTCAACAGA
AGGAAAAATCCCATCAGATTGAATCGACGACCTATACTTCAACTAAAGGCACACGGAAATCAAGG
GTTCAAGAGCACAAAACAGAGGAAATGCACATGAGTCTCCTTGAAGAACGAAGTCTAAGGTAAAG
AAAGAATCGTTCTCTGGCTGGAGGGAAAAGTCAACCTTCCCTGAAGCCGAAAGCGGCTAGAGCAA
GATCGACTGAGTACCAGTACTGCCTTGCCCAAAGCTACCAAAGAAAGTGGAACCCTTGAAAGAGA
GACGTAGGCCCGAAAGCAAGAGAAAGAGTTTCCCACTGGAACTGGAGTAGCGGAACTAGCACGAC
GAACAATGCTCGGCACTCTGTCATGTGAGCCCCTCTCATTCTCTA
Right flanking sequence: Indices 84112 -- 84611
ATTCTTAGCTCTCACCGCCTTCTCACGCTAATGAAAGCCCTTACAGAACAACTACTGCGAGAGCC
TTTCCTTCTCCGATACGGAAGGGTACTGGTCAAAGTCACTTTCCAGAAGAGACCAAACTTCCTAT
TTGTGACTCTTGCCAACAATTGGTTCTTTAACTGGCACTTGACTCGAACCGCTTGCCATATCTAA
ACTAGCTACTGGCAAAGAGGGAATTGATTCAAGATCCCCTTGCGCCCTACAACCCGAAAGTGATT
CTCTATCAAAGCACCTGCGGTGGGCTTAGCTGACTAACGAGCATCAAAGACCTGAGCTTACCGCT
ACGAGTAGATTCGTAGAGTAGACTGAATAGCCCAAGCTTACCCAGAGTTTCTATGACCTCCCTCG
AGTACAGTACAGGCTACGCTAGCAAAGGTACACGGAAGGGAGACAAAATCCACTACTGTTCCCCC
GCTTTCAGTCGGGAGTAGTCACTGCTCTATAATCCGATCTAGGTG
Found at i:141928 original size:21 final size:21
Alignment explanation
Indices: 141865--141929 Score: 55
Period size: 21 Copynumber: 3.1 Consensus size: 21
141855 ATATAGACTG
*
141865 TCAGCATTCTCCTTCCTCATT
1 TCAGCATTCTCCTTCCGCATT
* *
141886 TCCGCAATCATCTGCTT--G-ATT
1 TCAGC-AT--TCTCCTTCCGCATT
141907 TCAGCATTCTCCTTCCGCATT
1 TCAGCATTCTCCTTCCGCATT
141928 TC
1 TC
141930 CGCAATCATC
Statistics
Matches: 33, Mismatches: 5, Indels: 12
0.66 0.10 0.24
Matches are distributed among these distances:
18 6 0.18
20 3 0.09
21 16 0.48
22 2 0.06
24 6 0.18
ACGTcount: A:0.15, C:0.35, G:0.09, T:0.40
Consensus pattern (21 bp):
TCAGCATTCTCCTTCCGCATT
Left flanking sequence: Indices 141365 -- 141864
CGCGAACCAAGACCCGTGATACGAAAACCAAAATCAGAATGAGGAAGAAAAAGATATCGTGATGT
AAGTCTATGATTCCTTGCATCATAGGTGTTGCTGCGTCTTGAGATCCTAATTGCCATGGTTCTGC
TGCATCACAAGAAGCTGTAGGAATAAGGCCACCATCAGGTGGAGTAGGCACACTCCCATGAGCAG
TAGGCTCGGGAGTGGGCGCGGGTGGGATGTCCCCCTTAGCTTCGACATCCGCCTTAGAAGCAGGA
ACATGAAGGGGAACATGAGCAAGAACAGGGTTAGCTTCCACGCGAAAGCCCCACCAACCGCTCTC
AACCTTGGGAGCAAGGCCTCGGTCCTTAGTGATTAAATCGTAGGCGTTCTTTGCCCTCATTTGGT
TTGACCATCCCATCCACCCATAAAATGTCAATATGATACCAACAACAACTATCAAGAAATAAAAG
TTTCTATCACGACTAAAAAATTCCTTAAGATTCTTATATAGACTG
Right flanking sequence: Indices 141930 -- 142429
CGCAATCATCTGCTTGATCATTTCATCCATCATTTGGTTTGGTTTGGTTCATTCTTTGACTGCTC
CCCCACAAAAAAGGGGGAGACTTGTTCTTGCTCTCCCAGAAGACGAAAGAAAAAGACGAAAGAAA
ATCGCCGGTTGGTCCGACCAAGAAAGGCATGGGAGTTTTGGGGCATTACAGCTCCGAAGAGCATT
CTTTTCGATGAAGTACCCACGGAGCGGTACACGGAACACCAACGCAATCTCAACAAAAAAAGTAC
AAGCAACTACATCAACAACCTGACGTGAACGACCGCTTTCTTTGAACTAAATTCATAGGCGATCG
ATCTTTCTCGACGTTAGACTTCGAACACTCTATTATATAATAAGACCCGCCCTCGAAATCAAAAA
GAAAGCCTCAGTCTGGTTCACCTACCCTAATGTATTATATATGCAATTTCGAGTTGACTTGCTTT
AACGAAAGTTGCTACGCGAAACCCACTTCCTGAAAGTCTTTAGAT
Found at i:141928 original size:42 final size:42
Alignment explanation
Indices: 141865--141947 Score: 157
Period size: 42 Copynumber: 2.0 Consensus size: 42
141855 ATATAGACTG
*
141865 TCAGCATTCTCCTTCCTCATTTCCGCAATCATCTGCTTGATT
1 TCAGCATTCTCCTTCCGCATTTCCGCAATCATCTGCTTGATT
141907 TCAGCATTCTCCTTCCGCATTTCCGCAATCATCTGCTTGAT
1 TCAGCATTCTCCTTCCGCATTTCCGCAATCATCTGCTTGAT
141948 CATTTCATCC
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.17, C:0.34, G:0.11, T:0.39
Consensus pattern (42 bp):
TCAGCATTCTCCTTCCGCATTTCCGCAATCATCTGCTTGATT
Left flanking sequence: Indices 141365 -- 141864
CGCGAACCAAGACCCGTGATACGAAAACCAAAATCAGAATGAGGAAGAAAAAGATATCGTGATGT
AAGTCTATGATTCCTTGCATCATAGGTGTTGCTGCGTCTTGAGATCCTAATTGCCATGGTTCTGC
TGCATCACAAGAAGCTGTAGGAATAAGGCCACCATCAGGTGGAGTAGGCACACTCCCATGAGCAG
TAGGCTCGGGAGTGGGCGCGGGTGGGATGTCCCCCTTAGCTTCGACATCCGCCTTAGAAGCAGGA
ACATGAAGGGGAACATGAGCAAGAACAGGGTTAGCTTCCACGCGAAAGCCCCACCAACCGCTCTC
AACCTTGGGAGCAAGGCCTCGGTCCTTAGTGATTAAATCGTAGGCGTTCTTTGCCCTCATTTGGT
TTGACCATCCCATCCACCCATAAAATGTCAATATGATACCAACAACAACTATCAAGAAATAAAAG
TTTCTATCACGACTAAAAAATTCCTTAAGATTCTTATATAGACTG
Right flanking sequence: Indices 141948 -- 142447
CATTTCATCCATCATTTGGTTTGGTTTGGTTCATTCTTTGACTGCTCCCCCACAAAAAAGGGGGA
GACTTGTTCTTGCTCTCCCAGAAGACGAAAGAAAAAGACGAAAGAAAATCGCCGGTTGGTCCGAC
CAAGAAAGGCATGGGAGTTTTGGGGCATTACAGCTCCGAAGAGCATTCTTTTCGATGAAGTACCC
ACGGAGCGGTACACGGAACACCAACGCAATCTCAACAAAAAAAGTACAAGCAACTACATCAACAA
CCTGACGTGAACGACCGCTTTCTTTGAACTAAATTCATAGGCGATCGATCTTTCTCGACGTTAGA
CTTCGAACACTCTATTATATAATAAGACCCGCCCTCGAAATCAAAAAGAAAGCCTCAGTCTGGTT
CACCTACCCTAATGTATTATATATGCAATTTCGAGTTGACTTGCTTTAACGAAAGTTGCTACGCG
AAACCCACTTCCTGAAAGTCTTTAGATCTGGCCTATCCAGTCGTC
Found at i:142052 original size:13 final size:13
Alignment explanation
Indices: 142034--142060 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
142024 GCTCTCCCAG
142034 AAGACGAAAGAAA
1 AAGACGAAAGAAA
142047 AAGACGAAAGAAA
1 AAGACGAAAGAAA
142060 A
1 A
142061 TCGCCGGTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.70, C:0.07, G:0.22, T:0.00
Consensus pattern (13 bp):
AAGACGAAAGAAA
Left flanking sequence: Indices 141534 -- 142033
TGGAGTAGGCACACTCCCATGAGCAGTAGGCTCGGGAGTGGGCGCGGGTGGGATGTCCCCCTTAG
CTTCGACATCCGCCTTAGAAGCAGGAACATGAAGGGGAACATGAGCAAGAACAGGGTTAGCTTCC
ACGCGAAAGCCCCACCAACCGCTCTCAACCTTGGGAGCAAGGCCTCGGTCCTTAGTGATTAAATC
GTAGGCGTTCTTTGCCCTCATTTGGTTTGACCATCCCATCCACCCATAAAATGTCAATATGATAC
CAACAACAACTATCAAGAAATAAAAGTTTCTATCACGACTAAAAAATTCCTTAAGATTCTTATAT
AGACTGTCAGCATTCTCCTTCCTCATTTCCGCAATCATCTGCTTGATTTCAGCATTCTCCTTCCG
CATTTCCGCAATCATCTGCTTGATCATTTCATCCATCATTTGGTTTGGTTTGGTTCATTCTTTGA
CTGCTCCCCCACAAAAAAGGGGGAGACTTGTTCTTGCTCTCCCAG
Right flanking sequence: Indices 142061 -- 142560
TCGCCGGTTGGTCCGACCAAGAAAGGCATGGGAGTTTTGGGGCATTACAGCTCCGAAGAGCATTC
TTTTCGATGAAGTACCCACGGAGCGGTACACGGAACACCAACGCAATCTCAACAAAAAAAGTACA
AGCAACTACATCAACAACCTGACGTGAACGACCGCTTTCTTTGAACTAAATTCATAGGCGATCGA
TCTTTCTCGACGTTAGACTTCGAACACTCTATTATATAATAAGACCCGCCCTCGAAATCAAAAAG
AAAGCCTCAGTCTGGTTCACCTACCCTAATGTATTATATATGCAATTTCGAGTTGACTTGCTTTA
ACGAAAGTTGCTACGCGAAACCCACTTCCTGAAAGTCTTTAGATCTGGCCTATCCAGTCGTCCAC
CAATCTCATCTTCTACTCTTTCTTCTGTTCCTTTTGTACCTTCCGGTTCGGTACCTTCTCTTTCT
TCTATCTCTCTCGATCACGATCATCAGATTCAGTAACTTGCTTCA
Found at i:156490 original size:15 final size:16
Alignment explanation
Indices: 156460--156492 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
156450 AGCTACTAAA
156460 TCATAGCAGCGAGAGC
1 TCATAGCAGCGAGAGC
*
156476 TCATAGCCG-GAGAGC
1 TCATAGCAGCGAGAGC
156491 TC
1 TC
156493 GGAACTCTAG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 8 0.50
16 8 0.50
ACGTcount: A:0.27, C:0.27, G:0.30, T:0.15
Consensus pattern (16 bp):
TCATAGCAGCGAGAGC
Left flanking sequence: Indices 155960 -- 156459
TAGAAGACACTTGGCTTCCTTAGGGACGATTAGGGAAGAGAAAAGAAGGTAAAGGAAGGAGGGAT
TCCATTAGTAGACTGGAGCTAGACCTTCAGCAGATACCAATTCAACGGATTGACCGGACTTCGCC
AAAGCCGCAGCCAACAACTCCTTACTTGCTCTCAACGCGTTACTCGTTGCTTGCCATAAACCTTT
GAACTTCAACAGACTCAGCCGGAACTAGGGACTACTTGCCCGAGCCCCTAAACCTTGGCGTTTAG
CAGATAACAACTACCAGATGCCTGAGCTACTAGCTTCCAGGGCATAGCTCTAACGACTAGAGGAG
CATAGAGACCGAATTTAGGCATACAAGGAGACAGGAAGCCTTCAGGAAAGGGGCTAAACTAACAA
TTGTTGCAATAAGAGAAGCCATAGAAACGAAATCCAGAGGGTTACGGACACCAGGGGGCGGTCCG
AGGGGTCCTCAACTCAATGATGGGGCTTAGCTGCTAGCTACTAAA
Right flanking sequence: Indices 156493 -- 156992
GGAACTCTAGCTACCAACTCATAGATACCTTGGATCATAGCGTACTTTCGGTACTTGATAAAGAC
CGTCAACAGCTGCAAGCACAGGAGAGGAGAACGGAAGCAACTTAGCCGTGAAGTCTTCCCATGAG
CCTTTCAACGGAAACCACTTACTGGATCCTCTTTAAAGAGGGATTGAAAAGAAGAGAGACAAGGA
AGAAGAAGTTGGATTACTTACTTGAGAAAGCACTTCAGCACAACTGATTGAACAGACTGGCTCCT
TAATGACCGGAATGCGCTTTAGCTACAAACTTCTTACTTGCTTAGCCCTTCAGATAGGGGCAGCT
ACCTCCTTACTAGCCTTCGCTCTTGCCGAAGCTACCGACTCGTTAATGGATATAACCAGAGGCCC
TAAAACTTCGAACTTCAACTGCTTCCAACGACGAGTTACTGGCTATAGCTCATAGGGCTTACTCC
CTTCACTTACTCTTCTAAACTGGAGTCTTCCAAAGCATATATGGA
Found at i:172348 original size:16 final size:16
Alignment explanation
Indices: 172327--172362 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
172317 TATCTTGCTT
172327 CTCATAACTCAACTAA
1 CTCATAACTCAACTAA
* *
172343 CTCATAATTCAATTAA
1 CTCATAACTCAACTAA
172359 CTCA
1 CTCA
172363 GAAGTCTAAG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.42, C:0.28, G:0.00, T:0.31
Consensus pattern (16 bp):
CTCATAACTCAACTAA
Left flanking sequence: Indices 171827 -- 172326
TCTCATAGTGAGCTAGATGATCGGGCAGCCTATTCATATTTGTAGCTTCATGGGTATAATAACTG
GTTGAAGGCCATGGTGAGAATTTGTCGACGCCTTTACCACTGGGTCTTCGTCAAGCCCCCTTCCT
CAACTAAAGTCAGCAAGATCTCCTTCCATATTCGCTAACAGCCTCTCGTTCCGTAGCTACTCCAG
GCGCATGGTCTCGTGACTAACCTTCCTCTCGAACTTTGGTGTCAAGCCATTCAACTTCCTTTCAT
TCTAGTTTGACTTCTCGCATACCGATGTTGGGGCAGAGCAAACAAAAACCGCCTTGAAGCGAACT
TCCACCTCTAACCCTAAATTTGGCGCTAACTGAGCCGTAGCTGATGAGCTTACTGAGTCAAAGCT
CTCACGAGATCTTTTTTCTCATAAGAAATAGAACAAGACCCGCATTCCCCCTCTCGTTAGCTTAG
CTTGGCTTTCGGGCGCGGATGAAGTTCTTTATAGGTATCTTGCTT
Right flanking sequence: Indices 172363 -- 172862
GAAGTCTAAGAAAAGTGTACCCGGACTCCTAGTCCTACTGTTAGCAACCCGGAAGGGAAGACTCT
CAAAATGAAAGGAACTCACCGTCTTGTTTGAAGTCTTTCTTCTTTCCTGAGCGAAGTCGAGGGAA
AGAAAGAGATTCTATATCTCGAAGTTGAAGTGTCGACCAACTTAGTTACAGGAATCAAAAGACTT
GACTGGAAAGAGAAAGAGCAGACCTATTGATAGAAGCTAGAAGCAGAGAGTCAATTGCATGTGTT
AAGCATATAGCTAGCGTCGGAGAAGCGTACAACTTAACTTCAATGTGATGTGTTAAGCATATAGC
TAGCATCGGTACAGAAGAGGACAATCAACTAGGCCCACCCAAGGCCTGTAAGCTTCTTCTTTTCA
CTTGCTATAGATTCAACCGAAAGCATTAACGGTTTGGAACCACTTCCTGCTCTAAGAGAGATTGG
ATAGAGAAGGAAGAACCGATTAGGAGGAGGAGTTCGGGCGTAGAT
Found at i:180849 original size:28 final size:28
Alignment explanation
Indices: 180817--180870 Score: 74
Period size: 28 Copynumber: 1.9 Consensus size: 28
180807 TGGTTAGCTC
*
180817 GAGTGAGC-AGGGTGGGTAGCTCGAGTTG
1 GAGTGAGCTA-GGTGAGTAGCTCGAGTTG
*
180845 GAGTGAGCTAGGTGAGTTGCTCGAGT
1 GAGTGAGCTAGGTGAGTAGCTCGAGT
180871 GAGATACGTG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
28 22 0.96
29 1 0.04
ACGTcount: A:0.19, C:0.11, G:0.46, T:0.24
Consensus pattern (28 bp):
GAGTGAGCTAGGTGAGTAGCTCGAGTTG
Left flanking sequence: Indices 180317 -- 180816
CTGAGCCAGGAGATCCTCTTTTGCTTTTGGATCGTTACAACGCTCGTTGAACGGTTCAAGTAGAA
GTGAATAGGTAAGAAGTAGAAACCCTCCATAGCAATCCATCTCCATAGGAGACAATATGAGCAAA
AGACAGGAATCCGTAAATCCCGCAGAAAAAAACTCAATCCGGGGGGAGTGAGGGGGGCAAGGGGA
ACGGGTGAGCGGCCCCTTGCACGCTGATGGACAAACCTTCGAAGCTCGAAGTGAAATGAGAACAT
CAGGAACTTCTCGTTTTCTATGGTCAACATACGATCAAACTCGTTCCAGTCGAACTAAGATGAAA
ATAGATACTCGACTCAAGTAAAGCTAAAGTCAAGTTCTCAAAGACAAACCACAAGAAACAGTCTT
CCGTCGGTGTATGTCGAATATCTTTCCTGCCTTCCTTTTCTTGGGTGAGTAAGTGGAGTCTGTTT
TACTCGAGTTGAGTGAGCTAGGTGCTGGAGTTAGCTGGTTAGCTC
Right flanking sequence: Indices 180871 -- 181370
GAGATACGTGGTTTATCGAGGTGAGGGCTGTGGTGAACGTCGAGAGGTACTGGAGTAACAAGCCC
CGTGGCTACCAAACCTGGGAGAAGCTGGGACGGTGGTACTGGAAGTGGATCCAATTTTCTGCCAT
CGACTTTTGTTTGAGAGTGATTCCCTTGATCTGTTTCTGGAATTGAGTTCAAATGCGTTGCCATG
TCCATTCGGACTTTTGGCACTATCAAGGAAGCTAGTATGCGCGTCATTAATTTCACTTTCCCTGT
CAACTTGTCCGGATCTTCAGCTATTCGTTTTGTAGCGGGCACTTCTGCTCGCCGCTGTTCTGCCT
TTTCTGACGACTTGCTGCTTACAGTGGAAATCATGGCGACTTCTGGTAGTTCTTCCATTGGGGCT
TTTCCCCGAATTGCCCTGAGCTCTTTAGCATCCTGCTGTTCAGCCCATTCCTTCAAAGAGACAGA
TTTCTGCGGAGATTCTGCACGACGCTTTCTCTTACTCAATGGTCC
Found at i:221766 original size:12 final size:12
Alignment explanation
Indices: 221749--221773 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
221739 TCTGGAGGTA
221749 GTTCCTGTGCCT
1 GTTCCTGTGCCT
221761 GTTCCTGTGCCT
1 GTTCCTGTGCCT
221773 G
1 G
221774 AGGGAAGGAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.32, G:0.28, T:0.40
Consensus pattern (12 bp):
GTTCCTGTGCCT
Left flanking sequence: Indices 221249 -- 221748
GAGACCTGGAATGTCGCCCAAGGGCCTTGTTGACGCAGCGCCCGCTGCCGGTGAGCCAATCCCCT
TTCTCGCTTCGGGAGCGCTGCCCGTGTGCGAGTCGGTCAAATCCCTGTTCAATATAAAAATGAAA
GAGACTGACCTTCGCCTGGCAAATAGAGAATAGGGCCCATGACATACACCTTTATTTTCCACAAA
AATCTCTCCTTAAGCGTTGAGGGGACAACTGATTCGTTGTGAGGACCATTAACTGAGATTTTCAC
TTCTTGTCTTGCAAATGCTGGTAGATCCGTGTTCATTGTTCTTACCGGAGGGAATCAACAATAGT
AGCCCAGTCAACCTCCTGTCAAATCAAGACCTTAAAGAAAAAGAGTAATCTATATGGAACAGCGG
TAAACTCTCGAGAATTGGTCCGCTAAAGGAATTCCATCTTTTGCTTTGGGCTCAACTCAAAAGTC
TAGCTGGAGCAGGTTTGAGCAAGTGTTGAAAGCAGTCTGGAGGTA
Right flanking sequence: Indices 221774 -- 222273
AGGGAAGGAAAAGACAGTCAAGTCAAGATGAAGGGGGGAGCTCTAGTCAAGTCAAGTTCTAATCA
AAGTCGTAAGTCCTCACCGCGTGAAAATGGAGTGATCGGCAGAAGGAATGAAAGTAGTTGAATAG
GAGGAAGTGAGCAAGTGTTGAAAGCTTCAGTCTTCAGTGATCCATTGGAACCGAAGATAACAAGT
AGAGTCTGCCCAATAGGTCACCAGGCTTGAAGTAACTTCGTGACTGATGGAGGTGGCCATTCCAC
GTTTGCTTTGTTCGTGAAGGGAGATCCTAAGCTCTGTGATATGACGTCCCCACCTGGTTGGTCTC
ATAGTTGTGCGAAAGCGGGACATGTGGACCACCGTTTAAGGGGATAGCTTTTAGTTAGCCGTTGA
AGGAGAAGGGGAAGTCAAGAAAAGCTCAAGATCTCATTAGTCAGGACAGAATCCGCTTTCAAGCT
TCAGTTAGAAAGGCAATCAATCAATCGAATTCGTCAGTCTGACGA
Found at i:273038 original size:12 final size:12
Alignment explanation
Indices: 273021--273050 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
273011 AGAAATCAGT
273021 CAGCTATAAGGG
1 CAGCTATAAGGG
273033 CAGCTATAAGGG
1 CAGCTATAAGGG
*
273045 CTGCTA
1 CAGCTA
273051 CAGGAAAGAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.30, C:0.20, G:0.30, T:0.20
Consensus pattern (12 bp):
CAGCTATAAGGG
Left flanking sequence: Indices 272521 -- 273020
TGACCTAGTCTTTCAACACAGTCAACAGACTCGGTTTAGCAGTCAAGTGACCAGTTCAGTCATAG
GTATTCGTTCTTTGAGTCGGTTTAGTTACAATCTCAGTCCACGGTGCATACCGAGCACCATTAGT
CTCACCTTATGGTTACACAAGGAAGAAGTCAAATGGTTCAGTGTCGACGAAGCGAAGACTGAGGC
TTCTGAATTACAGCCTTTTCAGGTTCGCGAATCAAGAATCAAAGTAGCAGCTCGCTCGGTCGAGG
AGACTAAAGCCTACGCATCGAATACATCTCGCTCTATCGAACCAGATAAACAGTCCAACCGGCTT
CAGATTCATACTCGAAGCGAGGTCATGGCCATAGAGGGAAAGCAAATTCCAGGAGTTGAAGCTCC
TAGAGGAGTCTAAGCTGGAGTGGAAAGAAGCGCGGGTTGCGCAAAGTCTAAAAGAGATTAGAAGG
CTATGATCGCCCATTTATATGAGCTAGGAAACCCTAGAAATCAGT
Right flanking sequence: Indices 273051 -- 273550
CAGGAAAGAGAGCGGGCTCTCCTCCAGAAGGATAGACTCCTATAAAGACTCGGGCAAAGGGAAGA
CTAGCTAGCAGTCTTGCGTTCCTCTCTTGAGGTGAGAGGAGACAGGTCAGGCAATCTCTAAAGAG
GAGAGCTATGTGGTGCCCGCATCCCTTAGTGACCTCAGAAGGCACTTTACAGGTGATAAAGATCA
GAGGGATTCCTACTACTAGCTCTTTTGGTCTGAGCTACGCGAAAAGGGAAGCAAGGGAAAGGGGA
GTGAAACCAAGTGGTTCCACTCAGGTAAAGAAGACCCCGATGTTGATATGCTCCGGAGCCTTTTA
CTGACGGATGATTGCCCCACCCTGCAAGTAGCCAACACAGCTAGTTCTTGGTCTCCAGCGAACGA
ATCCCAGGTTTGAGACTCGATGTATCCGATAGTAAGGAAGGCAGAGACTATTACAAGCCGGGTAG
AGAGGGAAAGGAGAGGCAAAGAAAAGGCCTTCCTCAAAAAGTATG
Found at i:359827 original size:13 final size:13
Alignment explanation
Indices: 359809--359835 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
359799 CAACCGGCGA
359809 TTTTCTTTCGTCT
1 TTTTCTTTCGTCT
359822 TTTTCTTTCGTCT
1 TTTTCTTTCGTCT
359835 T
1 T
359836 CTGGGAGAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.00, C:0.22, G:0.07, T:0.70
Consensus pattern (13 bp):
TTTTCTTTCGTCT
Left flanking sequence: Indices 359309 -- 359808
TGAAGCAAGTTACTGAATCTGATGATCGTGATCGAGAGAGATAGAAGAAAGAGAAGGTACCGAAC
CGGAAGGTACAAAAGGAACAGAAGAAAGAGTAGAAGATGAGATTGGTGGACGACTGGATAGGCCA
GATCTAAAGACTTTCAGGAAGTGGGTTTCGCGTAGCAACTTTCGTTAAAGCAAGTCAACTCGAAA
TTGCATATATAATACATTAGGGTAGGTGAACCAGACTGAGGCTTTCTTTTTGATTTCGAGGGCGG
GTCTTATTATATAATAGAGTGTTCGAAGTCTAACGTCGAGAAAGATCGATCGCCTATGAATTTAG
TTCAAAGAAAGCGGTCGTTCACGTCAGGTTGTTGATGTAGTTGCTTGTACTTTTTTTGTTGAGAT
TGCGTTGGTGTTCCGTGTACCGCTCCGTGGGTACTTCATCGAAAAGAATGCTCTTCGGAGCTGTA
ATGCCCCAAAACTCCCATGCCTTTCTTGGTCGGACCAACCGGCGA
Right flanking sequence: Indices 359836 -- 360335
CTGGGAGAGCAAGAACAAGTCTCCCCCTTTTTTGTGGGGGAGCAGTCAAAGAATGAACCAAACCA
AACCAAATGATGGATGAAATGATCAAGCAGATGATTGCGGAAATGCGGAAGGAGAATGCTGAAAT
CAAGCAGATGATTGCGGAAATGAGGAAGGAGAATGCTGACAGTCTATATAAGAATCTTAAGGAAT
TTTTTAGTCGTGATAGAAACTTTTATTTCTTGATAGTTGTTGTTGGTATCATATTGACATTTTAT
GGGTGGATGGGATGGTCAAACCAAATGAGGGCAAAGAACGCCTACGATTTAATCACTAAGGACCG
AGGCCTTGCTCCCAAGGTTGAGAGCGGTTGGTGGGGCTTTCGCGTGGAAGCTAACCCTGTTCTTG
CTCATGTTCCCCTTCATGTTCCTGCTTCTAAGGCGGATGTCGAAGCTAAGGGGGACATCCCACCC
GCGCCCACTCCCGAGCCTACTGCTCATGGGAGTGTGCCTACTCCA
Found at i:359977 original size:42 final size:42
Alignment explanation
Indices: 359922--360004 Score: 157
Period size: 42 Copynumber: 2.0 Consensus size: 42
359912 GGATGAAATG
*
359922 ATCAAGCAGATGATTGCGGAAATGCGGAAGGAGAATGCTGAA
1 ATCAAGCAGATGATTGCGGAAATGAGGAAGGAGAATGCTGAA
359964 ATCAAGCAGATGATTGCGGAAATGAGGAAGGAGAATGCTGA
1 ATCAAGCAGATGATTGCGGAAATGAGGAAGGAGAATGCTGA
360005 CAGTCTATAT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.39, C:0.11, G:0.34, T:0.17
Consensus pattern (42 bp):
ATCAAGCAGATGATTGCGGAAATGAGGAAGGAGAATGCTGAA
Left flanking sequence: Indices 359422 -- 359921
GACGACTGGATAGGCCAGATCTAAAGACTTTCAGGAAGTGGGTTTCGCGTAGCAACTTTCGTTAA
AGCAAGTCAACTCGAAATTGCATATATAATACATTAGGGTAGGTGAACCAGACTGAGGCTTTCTT
TTTGATTTCGAGGGCGGGTCTTATTATATAATAGAGTGTTCGAAGTCTAACGTCGAGAAAGATCG
ATCGCCTATGAATTTAGTTCAAAGAAAGCGGTCGTTCACGTCAGGTTGTTGATGTAGTTGCTTGT
ACTTTTTTTGTTGAGATTGCGTTGGTGTTCCGTGTACCGCTCCGTGGGTACTTCATCGAAAAGAA
TGCTCTTCGGAGCTGTAATGCCCCAAAACTCCCATGCCTTTCTTGGTCGGACCAACCGGCGATTT
TCTTTCGTCTTTTTCTTTCGTCTTCTGGGAGAGCAAGAACAAGTCTCCCCCTTTTTTGTGGGGGA
GCAGTCAAAGAATGAACCAAACCAAACCAAATGATGGATGAAATG
Right flanking sequence: Indices 360005 -- 360504
CAGTCTATATAAGAATCTTAAGGAATTTTTTAGTCGTGATAGAAACTTTTATTTCTTGATAGTTG
TTGTTGGTATCATATTGACATTTTATGGGTGGATGGGATGGTCAAACCAAATGAGGGCAAAGAAC
GCCTACGATTTAATCACTAAGGACCGAGGCCTTGCTCCCAAGGTTGAGAGCGGTTGGTGGGGCTT
TCGCGTGGAAGCTAACCCTGTTCTTGCTCATGTTCCCCTTCATGTTCCTGCTTCTAAGGCGGATG
TCGAAGCTAAGGGGGACATCCCACCCGCGCCCACTCCCGAGCCTACTGCTCATGGGAGTGTGCCT
ACTCCACCTGATGGTGGCCTTATTCCTACAGCTTCTTGTGATGCAGCAGAACCATGGCAATTAGG
ATCTCAAGACGCAGCAACACCTATGATGCAAGGAATCATAGACTTACATCACGATATCTTTTTCT
TCCTCATTCTGATTTTGGTTTTCGTATCACGGGTCTTGGTTCGCG
Found at i:359985 original size:21 final size:21
Alignment explanation
Indices: 359922--359986 Score: 64
Period size: 21 Copynumber: 3.1 Consensus size: 21
359912 GGATGAAATG
359922 ATCAAGCAGATGATTGCGGAA
1 ATCAAGCAGATGATTGCGGAA
* *
359943 ATGCGGAAG--GA-GAATGCTGAA
1 AT-C--AAGCAGATGATTGCGGAA
359964 ATCAAGCAGATGATTGCGGAA
1 ATCAAGCAGATGATTGCGGAA
359985 AT
1 AT
359987 GAGGAAGGAG
Statistics
Matches: 34, Mismatches: 4, Indels: 12
0.68 0.08 0.24
Matches are distributed among these distances:
18 3 0.09
20 3 0.09
21 22 0.65
22 3 0.09
24 3 0.09
ACGTcount: A:0.38, C:0.12, G:0.31, T:0.18
Consensus pattern (21 bp):
ATCAAGCAGATGATTGCGGAA
Left flanking sequence: Indices 359422 -- 359921
GACGACTGGATAGGCCAGATCTAAAGACTTTCAGGAAGTGGGTTTCGCGTAGCAACTTTCGTTAA
AGCAAGTCAACTCGAAATTGCATATATAATACATTAGGGTAGGTGAACCAGACTGAGGCTTTCTT
TTTGATTTCGAGGGCGGGTCTTATTATATAATAGAGTGTTCGAAGTCTAACGTCGAGAAAGATCG
ATCGCCTATGAATTTAGTTCAAAGAAAGCGGTCGTTCACGTCAGGTTGTTGATGTAGTTGCTTGT
ACTTTTTTTGTTGAGATTGCGTTGGTGTTCCGTGTACCGCTCCGTGGGTACTTCATCGAAAAGAA
TGCTCTTCGGAGCTGTAATGCCCCAAAACTCCCATGCCTTTCTTGGTCGGACCAACCGGCGATTT
TCTTTCGTCTTTTTCTTTCGTCTTCTGGGAGAGCAAGAACAAGTCTCCCCCTTTTTTGTGGGGGA
GCAGTCAAAGAATGAACCAAACCAAACCAAATGATGGATGAAATG
Right flanking sequence: Indices 359987 -- 360486
GAGGAAGGAGAATGCTGACAGTCTATATAAGAATCTTAAGGAATTTTTTAGTCGTGATAGAAACT
TTTATTTCTTGATAGTTGTTGTTGGTATCATATTGACATTTTATGGGTGGATGGGATGGTCAAAC
CAAATGAGGGCAAAGAACGCCTACGATTTAATCACTAAGGACCGAGGCCTTGCTCCCAAGGTTGA
GAGCGGTTGGTGGGGCTTTCGCGTGGAAGCTAACCCTGTTCTTGCTCATGTTCCCCTTCATGTTC
CTGCTTCTAAGGCGGATGTCGAAGCTAAGGGGGACATCCCACCCGCGCCCACTCCCGAGCCTACT
GCTCATGGGAGTGTGCCTACTCCACCTGATGGTGGCCTTATTCCTACAGCTTCTTGTGATGCAGC
AGAACCATGGCAATTAGGATCTCAAGACGCAGCAACACCTATGATGCAAGGAATCATAGACTTAC
ATCACGATATCTTTTTCTTCCTCATTCTGATTTTGGTTTTCGTAT
Found at i:417770 original size:17 final size:17
Alignment explanation
Indices: 417731--417775 Score: 56
Period size: 17 Copynumber: 2.7 Consensus size: 17
417721 CAGGAGGGTT
* *
417731 ACAACCTATTCGATTAA
1 ACAACCTATTCTATGAA
417748 ACAACCTATTCTATGAA
1 ACAACCTATTCTATGAA
*
417765 AGAACCT-TTCT
1 ACAACCTATTCT
417776 TAATTGAAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
16 4 0.16
17 21 0.84
ACGTcount: A:0.38, C:0.24, G:0.07, T:0.31
Consensus pattern (17 bp):
ACAACCTATTCTATGAA
Left flanking sequence: Indices 417231 -- 417730
AAGAGCTTCCCTGGACTTACAGCTCGTGAAGGGAGTCCGCTTTCTCCTTTATAACCCTTAATGCC
TTCTAACGCATTCTACTAATCTTCGACCACCCTACAGTTAACAACAAGGAGAAAGTCTCAGGGTT
TGATTCCTTAACCTCCCGTTGTGCCATCCTGCTCTCCAAACTACAAAGAGAAGACTGCTCCCATG
CTTTCATAGACATCAAGAACAGCTGATAATAGCAGCCTTAATCAACATATAGGTTGCCCTCTCCT
AGCTATCAGAATAGGAATCGCTATTCGTGCAATCGGGCTTTAAGAAAAAAAGATGGGTTTCCCGT
GGTAGCAATACGCAAGAAGTAAAGAAAGGATTCCGAAAGACCTGGGACCGGTACTCTATTTAGGA
AAGAATTCCCTATCTATTTATACCAGAAGGGCAAGGCAACTACCTTATGAAACTACCAGACAAAG
AAGGAATGCACGACTTCTTAGCGCTCAGCTTGGATCAGGAGGGTT
Right flanking sequence: Indices 417776 -- 418275
TAATTGAAAAAATAAGTCATTCGTTGGGATTGAATGCCGGGTAGCGAGAACTCACTTCAGGAGCT
AGCAGTCACCTTAAGGGATCGCCCTTAGTGTCATCCAAAAACGAGATCTAAGGGGAAGACTCTTG
GGCCAAACCTATCCTCACTTGGGCAAGGAATCCAGAGCGAAGGACAAGCGTTAAGATAATTATAT
ACTCTTTCTGTCTTCAAGTGCAAAATAAATAGCTTTCGTAACATCTACAATTGTTTCAGCGGGAG
CAGTGGTATTGGAAACGTCCTTAGGTCTTTGATTCATTCCTTGGCAGCTACCTTAACCCGAGGAT
CAAGCTTACCAGAATGCTCCAATTGAAGTAGTTGATCCAACACAGTAATGACCTTCAGTAGTGCT
TCTTCCCCGCTCTGGACAGTAATAATAGAAGGCAAGCTAGCATTAGCAAGGCAAGTTAACTTGAA
GCAATAACTCTTAAGGGCGGGAGTGAATGCACCATTGGAGGATGG
Found at i:428973 original size:16 final size:16
Alignment explanation
Indices: 428945--428994 Score: 82
Period size: 16 Copynumber: 3.1 Consensus size: 16
428935 CGTCTTTGAT
*
428945 TAGCAACAAGAACTAC
1 TAGCAACAGGAACTAC
*
428961 TAGCTACAGGAACTAC
1 TAGCAACAGGAACTAC
428977 TAGCAACAGGAACTAC
1 TAGCAACAGGAACTAC
428993 TA
1 TA
428995 AGTCAATGAA
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 31 1.00
ACGTcount: A:0.44, C:0.24, G:0.16, T:0.16
Consensus pattern (16 bp):
TAGCAACAGGAACTAC
Left flanking sequence: Indices 428445 -- 428944
CTAGTTGGTCTACGATCTACAGCTTTATAGATGTTTTCGACATTGCGGTAACCGTAACCCCGGAT
ATCCCGAGCTGCCTACGTTGATGTGATGATCCCACTGCCGATATCTGAGGAGGAATCCATTCATC
TGAACTGAAGGATCCTCTTTATGTTATAAACCTGTTCCATAAAAAGCGCTAAGGAACCCGACAAG
AAGACCATCAGAAGATCAGAATATCATAACATAAGCATCTCACTTTCCCTACCCTCCTTAAAGGG
TTGGATGCGACAATGGCTCAGTCACCTAAAGTGGTATTGTGAGATTGCAATGAGCAGCCAGCTAT
CTGTGGCCGTTATAGATATCCTGCTCTGGAGGGGATCTCCAAGCCAAGTCATTGATTGATCTACT
TCTATACTCTAGGGTTTGAACTTGCCCGGTCCTAGTAATAAGATTCCGGAACCACTCCTCCTTAC
CTCCATTCGGTTCCCTCCGGGGGGTAGTTACACGCCGTCTTTGAT
Right flanking sequence: Indices 428995 -- 429494
AGTCAATGAACTCACTGACCGGTTAACTACCTACTATCTCAGAAATCAAGGCTTGCCTGCTCTCC
TTCCTACTCTCCTTCCTTAGCGAACCCCGTACGCTGTAAGTTATCAAGTCGAAATCTCATTGATG
TAGTGCTCCTTCTCCGACTCTGACCGTGAGACTGACTTCCTCACTTCCCGGTAACTCACTTGTGT
GCTTCTCGATCCTGCTGGTCAAAGATTCCTCATGATCCGCCTCCAGGTTCAGGGAGACCTAGTCC
GGAGGTGGCTAACGTGGATAGCTTTGCTAAGTCTTTTTTAATGCAAATTACGCGGAAAACGCAAA
AGTGCGACTTTGAGATGCCCATTTCACTAATAAAGAGGTCTTGCAACTCATTTTACGGGGTTTAT
GAAAAATGAAACTTTAGATCGTAGGTTTCAGCAAGTAAATCGGCTTGCAACCTAAAATCCCGGGA
AAACGCTAAAGTTCTCGCTCGACTGTCTGCTGACCTTCACTCTCT
Found at i:433267 original size:29 final size:29
Alignment explanation
Indices: 433225--433303 Score: 131
Period size: 29 Copynumber: 2.7 Consensus size: 29
433215 CGGAGGGCCT
**
433225 GACTAGTAATTCCAAATTCAATTCACTCC
1 GACTAGTAATTCCAAAACCAATTCACTCC
*
433254 GACTAGTAATTCCAAAACCAATTCACTCT
1 GACTAGTAATTCCAAAACCAATTCACTCC
433283 GACTAGTAATTCCAAAACCAA
1 GACTAGTAATTCCAAAACCAA
433304 GTTGTGTACC
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 47 1.00
ACGTcount: A:0.39, C:0.27, G:0.08, T:0.27
Consensus pattern (29 bp):
GACTAGTAATTCCAAAACCAATTCACTCC
Left flanking sequence: Indices 432725 -- 433224
TGTAAAGGAGCACCAATCCCGAATAGCAGCAAAAAAATCCTCTCTAATGAGACTCCAACAGTCCC
TGCCAGTGAAAGCATCTGGGCCCGGAGCACTGTCTGGCTTAAGATCCTGCGTCGCTTTCCCAATA
TCATAGTCTGAAGGAATAGAAGAAAGCATAGCATTATGATCCGTGGAAATAACTGAGGGGATTCA
ATCCAAAACAGAAGAGCTCGCTTGCCCCTTTGACAGACTGAAGGCTGTTTTCTTGGTTTGCGGAT
AGGATAATAGGGTGCAGAGAATAGGTTTCGAGTTCTTCCTTGATCTCATCTGCCCATTTCTTCCA
TATCAGAGGCTCCTACAAACCAAGATCAATAATACGAAAATGAGAATTCGGAAGGGTGATGTAAG
TCCATTATTTATTGCATCATAAGTAAGGCAAGGAAGCTATGAACTCTGGTGCAAGGGGCCTGCCA
CCATTTCCCCGTGCCCCTCTGACTCCCTAGGGAATCGGAGGGCCT
Right flanking sequence: Indices 433304 -- 433803
GTTGTGTACCGTCCGGTTTGCAACCCCTATTCATTGCTGAGGATTGAACATGATCTGCCATAATC
TCTTCGATCCCTTCATTTATATTCTTTAAATAATGGATAAAGCTTTGTTGGTGCTTGTCGAAGGG
CGTTAAGCCACATTTGGTGCTCAGACACGCTTGGCCCTATCTCCAAGCTGGAGATGATGTCGCGA
GTGAGTTCATCATAGAGTGACTTTCTTTCTGCTTCTGAACGCGAAAGTCGCCATTTCGGCCGACC
GCGTTCACAGTAATGATGGAATTGATCGCGAACCAAGAGATGCAATTCATCCTTTTTTCTTTGCA
CCTCTTCTGGATCTCTATCTGGATCCCCAGAAGTTTCGGAGGAGTCGGCCGCCCCTGTGTTCGAG
GGCCCTGCCTCATCGCGGGCCACCTGTTCCGATTCCTCTAGGATAGACCCTACACTTCTGGCGGG
GGAAGGTATTTCGAAAAAATCCGAAATACCTTGGCCTTGGCGATC
Found at i:465682 original size:20 final size:19
Alignment explanation
Indices: 465657--465694 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
465647 AGGATTCGAA
465657 TCAGTTCAAGACTTCGGTTC
1 TCAGTTCAAGACTT-GGTTC
*
465677 TCAGTTCACGACTTGGTT
1 TCAGTTCAAGACTTGGTT
465695 TTGTTCCTCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.18, C:0.24, G:0.21, T:0.37
Consensus pattern (19 bp):
TCAGTTCAAGACTTGGTTC
Left flanking sequence: Indices 465157 -- 465656
TACACACCGACTTTTGCTCTACTAGCTATTTCATATGGAACTTGCTCTTTGCTGATTGGATTGAT
TCGATTGATGAAGCCATGGATGCAACCGATGCTTGGGGAATGAATGCCTTGGGTGCCGCATCTAT
TCAACGTCCCTCCGGCCTACCTATCGACCGCCTCGTCTCAATCCAAGAGGTTGCAGCAGCCGGCA
TGCCTTCCCCTCCCTCCTCGAGTAGGTATCTTCCAACCAACTCTTCCATTGACCAAAACACAAAT
TCTTTAATAACAAGGAAGAAGAATGGAATTCCGACTCACACTTGCCCGTAACTTGACTCGCCTAT
TCTATTACGAATTGGTGGACTCGAAAGGCGTTCAAGACGCGAACTAAGAGAAAGTGGGCAAGACG
CCAAGCAACGAACTTCTAGCACGACCTTGTTGGAGTTCAACCCTCCAGGTTAGCCATCAAACTCA
ATCCCATGTAAGAAGTCAAACCCAGTGAGAATTCCAGGATTCGAA
Right flanking sequence: Indices 465695 -- 466194
TTGTTCCTCATCTTTAGCAAGCCCGCCTCAGCGGGACAGACCAGTCCTGCGCTTGTTAGGTAGGG
AGATAGTCTTGGTTTAGCTTGACTAGTTGAGCGAAGGGACCCATTTGAGTATGGGGCCCGAGTGG
TACTCCTTAGTCTACTGGAAGTGCATTAAGGACTTCTTACCCTTTTGATTCCACGAGCTAGCATG
ATGAGTTCATCAGACTATTTCAATACCAATAGAGGACAATCTCCCGAATCCTTCTTTTTCTTCTT
TGTAACTTGAAGCTAAACTCCTTAAGGAAGAAGAGCTAAAGTAAGGAAGCGAAGCTGCTTTCCTC
AAGGCCGCTATTCCTGACTTTAGGAATAGAGTAAGGCCTTTACCTAAACCTCGCACGTGGGGGAT
AATCGCACTAGTATATCCCTCCGAGTGGGACAAGGATTCCTAAGGCTCACTTTTTTCTTTATGAA
ATTCTCGTCCTATTTCCCGATCGGTATATTGTCTGTTTTTGCCGG
Found at i:495804 original size:24 final size:24
Alignment explanation
Indices: 495772--495869 Score: 72
Period size: 24 Copynumber: 4.1 Consensus size: 24
495762 CCTTACCTCA
* * *
495772 CTGCCCTTGATTGGACTGATCGAG
1 CTGCCCTTGATCGCACTCATCGAG
* *
495796 CTGCTCTTGGTCGCACTCATCGAG
1 CTGCCCTTGATCGCACTCATCGAG
** * * * *
495820 CTGCCCTTCTTCGGAGTCATGGAA
1 CTGCCCTTGATCGCACTCATCGAG
*
495844 CTGCCCTTGTTCGTC-CTCATCGAG
1 CTGCCCTTGATCG-CACTCATCGAG
495868 CT
1 CT
495870 TAGCTTGTGC
Statistics
Matches: 56, Mismatches: 17, Indels: 2
0.75 0.23 0.03
Matches are distributed among these distances:
24 56 1.00
ACGTcount: A:0.13, C:0.32, G:0.24, T:0.31
Consensus pattern (24 bp):
CTGCCCTTGATCGCACTCATCGAG
Left flanking sequence: Indices 495272 -- 495771
TAGAACTATTCACTACGTCAAACTTAGTTGAAAAGTAAGACCTTCCTACCAGCACAGTACTTAAA
CTGACATGAGGAACGAAAGCCAGACGGACGAGGAAGTCGGCTTCCACCTTTCACGCAGAATGCTT
CATGCCATTTATCGATTCTCTAGCATTCGAAATCTTTCTTATTTCTTTCTAATACCTCGAAGATG
GCACATTTGCTAAGACCTGGGCGCCGCCCCTCTTCTTGTTTTTTTCTTCGTCTTTCCTCTCTCGC
TTGTCGGTTGGTGAGCTTATTTGGCTTCCTCAGGTTTACTTTCGAATTGGGATTCTGTCAAGCCT
AACTTTAGAGGAAAGAAGCCCTAGGAACGAGATGGAAGACTCCTGGAAAGCCCCCCAGAAGGCCG
TAACGGAGGAGATTCCCTTCACAGAACGTAACCATCGGAGTCATCAAGTCCAGCAACATAACCGT
TGCAAAGGCCTCCCTTTCAAAAGTGAACTATGGCACCTTACCTCA
Right flanking sequence: Indices 495870 -- 496369
TAGCTTGTGCAGTCATCAGGAGCTTACCCTGCTCTAGGAGCTGCCCTTGGTCGGACTCATGGAGT
TTACCCTGGTCGAACTCATCGAGCTGCCCTTGCACAGTCATCAGGAGATTACCTTACCAGAACGG
CACCTTCTGCCTCAGAAAGTCCAGGACCAGAACGTAAGCCTCGGACTCATTAAGTACAGGAACAA
AACCCTCGGGCTCATCGGCCTCTCATTCAAAACTAAGAGCAACTCAGGGAACCTACCTCACACAG
CCCATCTTCGTCCTAGTGGAGCAGCCCTTGATCGGACAGATCGAGCAGGCCTTGTCTAGTCATCA
GGAGCGTACCATGGTCGGACTCATGGAGCTGGCCTTGTCCAGACGTCAGGAGCTTACCATGTGCA
GTCTATAAATACAAAATTATGAAACCCACCCACACCTAAAAAACTTCTTCGACCACGCCCAAGGA
GTAAAGCACTTTTTTGAGCTATTGGCGAAGGCCTTCGGGCCGAGG
Found at i:496213 original size:48 final size:48
Alignment explanation
Indices: 496161--496255 Score: 118
Period size: 48 Copynumber: 2.0 Consensus size: 48
496151 CAGCCCTTGA
* * *
496161 TCGGACAGATCGAGCAGGCCTTGTCTAGTCATCAGGAGCGTACCATGG
1 TCGGACACATCGAGCAGGCCTTGTCCAGACATCAGGAGCGTACCATGG
* * * * *
496209 TCGGACTCATGGAGCTGGCCTTGTCCAGACGTCAGGAGCTTACCATG
1 TCGGACACATCGAGCAGGCCTTGTCCAGACATCAGGAGCGTACCATG
496256 TGCAGTCTAT
Statistics
Matches: 39, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
48 39 1.00
ACGTcount: A:0.21, C:0.26, G:0.31, T:0.22
Consensus pattern (48 bp):
TCGGACACATCGAGCAGGCCTTGTCCAGACATCAGGAGCGTACCATGG
Left flanking sequence: Indices 495661 -- 496160
GTAACGGAGGAGATTCCCTTCACAGAACGTAACCATCGGAGTCATCAAGTCCAGCAACATAACCG
TTGCAAAGGCCTCCCTTTCAAAAGTGAACTATGGCACCTTACCTCACTGCCCTTGATTGGACTGA
TCGAGCTGCTCTTGGTCGCACTCATCGAGCTGCCCTTCTTCGGAGTCATGGAACTGCCCTTGTTC
GTCCTCATCGAGCTTAGCTTGTGCAGTCATCAGGAGCTTACCCTGCTCTAGGAGCTGCCCTTGGT
CGGACTCATGGAGTTTACCCTGGTCGAACTCATCGAGCTGCCCTTGCACAGTCATCAGGAGATTA
CCTTACCAGAACGGCACCTTCTGCCTCAGAAAGTCCAGGACCAGAACGTAAGCCTCGGACTCATT
AAGTACAGGAACAAAACCCTCGGGCTCATCGGCCTCTCATTCAAAACTAAGAGCAACTCAGGGAA
CCTACCTCACACAGCCCATCTTCGTCCTAGTGGAGCAGCCCTTGA
Right flanking sequence: Indices 496256 -- 496755
TGCAGTCTATAAATACAAAATTATGAAACCCACCCACACCTAAAAAACTTCTTCGACCACGCCCA
AGGAGTAAAGCACTTTTTTGAGCTATTGGCGAAGGCCTTCGGGCCGAGGGTGCCTTTCATTCTGA
CACGATGACTTCTTCACGCATCCCAGTCTCAGACGTCAAGCCTCCTCCTAATCGGTATTCAAGAA
CGTTAGGACATACTTTACAGGAATGAGACGTAAGGAGGAGATTCATCTGACTCTTGATCTGAATC
TTTACGTAAAGCGAGAACCGGACGGAAAGAATATCTATCTTATTCGTATCTCAGAACGAGAAAAC
CAGACTTTTGATTCTGTTGATGCCGACGCAGCAACTCGCTCAAACAGCTAGCTATTCTCAAACGT
TGAAGCCTCTTATTTGGACCTGGACAGTCTTCCGCGAATCAGCCTTCTTATGTTATGTCTTCACA
ATGGTCTTTCCTTCGAAAAAGTTCTTGATCTTAGTTTGATTATTT
Found at i:600692 original size:14 final size:14
Alignment explanation
Indices: 600673--600707 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
600663 CTTCCCAAGT
*
600673 TCAACTCAATGATG
1 TCAACTCAACGATG
600687 TCAACTCAACGATG
1 TCAACTCAACGATG
600701 TCAACTC
1 TCAACTC
600708 CATATTGAGA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.34, C:0.29, G:0.11, T:0.26
Consensus pattern (14 bp):
TCAACTCAACGATG
Left flanking sequence: Indices 600173 -- 600672
CTTTGTATCCTACGAAACGAGCCAATAGATGACTTGCAGAGATATGGAGCGGATGGCGTACTGAT
AGATCTCCAGAAAGACCCGGTGAAGTATATGATCTTTACGAGGCCGAAATAGCATCACAGAAAGA
GCAGCCGGAATCTAGGTAGCGCCATCTAACTCGTTGTTCCCATCGATTTGGGTTTTTCCGAATGA
TAGAGGCAAGAACAAAGTTAACAACAGAACAGACTTAGAAGGATGAGGATCATGGGTTCGAAAGG
CAGCCAACCAATACTTACTAAGTAGAAGTCACAGGGCTCATACTAAGATGAGGAACTAATGACGG
GAACGGTAGGGTAGGGGTAAGATGAGGAACGAAAGCCAGGGTATTCTCAGACTGACTTTAGAGGA
AAGAAGGATTCTTTTTAGTACTGAGCCTTAGCTCAAAAGGACCTAAATGAAGAAGGGTCCGCAAG
AAATCGGGAACTCGACTCCGTTAAAGTTAGGTCTCCTTCCCAAGT
Right flanking sequence: Indices 600708 -- 601207
CATATTGAGATTCTGTGCCATCTCGCTTCTACGCCTACACCATTTCCAAGAAGTCAGTCAATCTT
GGCCAGTAGCTTCGGGGTCTCATAGCAAAGAACGGGATAGCAATAGTCGCAAGCGCGAGGAACGA
AAGAAGACATTCCTTACTCAGATCAGGAATGGACTGAGACAGAACGAAGGAGACTACGGTTCAGG
ACTGCCTTACAGAGGCATAACTCATAGCCAGCTCATAGCTCGCAAATCAGTACAGTAGAACGACA
AGCTTCCTTGCCTTCGGTTAGTTAACGTTGGTTCAGCGACGCCGTCAGTCTTCTATTTGATGTTG
GGACTCGGCTGGTGCGTACCAAGCCCCTGTTCGACCGAGGTTGGATTAGTCCCTCAGCCAAAACC
AAGTACTTAGAGCCATCACAGCCACCCAGAAGATAAGGTAGAAAACCCTCTAGAAAGGGGGTGCG
AGGATAGGCGTCCTAGGCCCCTGAGGCATCTTAGCAACCATGTAG
Found at i:605584 original size:39 final size:39
Alignment explanation
Indices: 605529--605607 Score: 149
Period size: 39 Copynumber: 2.0 Consensus size: 39
605519 CCCATCCTTC
*
605529 AATATCATGATTGGGTCGACCAGGCCAGATCATGAGTGA
1 AATATCATGATCGGGTCGACCAGGCCAGATCATGAGTGA
605568 AATATCATGATCGGGTCGACCAGGCCAGATCATGAGTGA
1 AATATCATGATCGGGTCGACCAGGCCAGATCATGAGTGA
605607 A
1 A
605608 TAGAAAATCG
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.32, C:0.19, G:0.28, T:0.22
Consensus pattern (39 bp):
AATATCATGATCGGGTCGACCAGGCCAGATCATGAGTGA
Left flanking sequence: Indices 605029 -- 605528
CCCATTGAAGGAAACTTTATGGATCAAGGCAGAAGCGAGGCGGGCCCGTCAACCCTGCCGGATCT
CAACGGCACCCCGCTGCCGGATCTGAACGAGCTTCCATCTCCTGCTCAGGAGATGGAGCCGAAGC
CAGCCTCTTCTTCAGAGCTGCGGGAAGCCGAGCAGGAAGAGCTGCGGAAGAAGCGCGTCTGGGAC
CCTTCGGACCCCTATTCTATCGAGGCGAGCAAGGCAGAACGCCTCAGGATGTTTGGGGCTGAGGA
AGTCCAACGGCAGGACGCCGAGGCTTTCCGACGAATCCAGAAAAGGACCTTAGGGGAACTCTTGC
AGCTGAACGAAAAAACCGAGAAGGAAATGAAAGCCTTCTACGAGGATTTTTCTCGAAAAAGGCGC
GAGAGGGGGGGGGCCACCATAATAAAAGATTTTGAGGGACCGCCGCCGGACGGGCAGACCTCACA
TCTAAGGATCCAGAGTTTTTTTTTCGAGAAAAGGTCCCATCCTTC
Right flanking sequence: Indices 605608 -- 606107
TAGAAAATCGAAAATGTACATAGCTGTTCCAGCGGAAATACTTGGAATAATTCTACCACTTCTAC
TAGGAGTAGCCTTTTTAGTGCTAGCTGAACGTAAAGTAATGGCTTTTGTGCAACGTCGAAAGGGT
CCTGATGTAGTGGGATCGTTTGGATTGTTACAACCTATAGCAGATGGTTTGAAATTGATTCTAAA
AGAACCTATTTCACCAAGTAGTGCTAATTTCTCCCTTTTTAGAATGGCTCCAGTGGCTACATTTA
TGTTAAGTCTGGTCGCTCGGGCCGTTGTACCTTTTGATTATGGTATGGTATTGTCAGATCCGAAC
ATAGGGCTACTTTATTTGTTTGCCATATCTTCGCTAGGTGTTTATGGAATTATTATAGCAGGTCG
GTCTAGTAATTAGGGGGCGGCCGTTCGGTCGCCTATGATACTAGGACCAATAGGTCAAAAATGGG
TTTGTGCCGCAGGTGTTGAACGATCTACTCTACACAGGTGTGGGC
Found at i:618857 original size:19 final size:19
Alignment explanation
Indices: 618833--618879 Score: 62
Period size: 18 Copynumber: 2.5 Consensus size: 19
618823 CCCTCTCTTG
*
618833 CTAGTAGCTTTCTTCTTTC-
1 CTAGTAGCTTT-TTCTTCCT
618852 CTAGTAGC-TTTTCTTCCT
1 CTAGTAGCTTTTTCTTCCT
618870 CTAGTAGCTT
1 CTAGTAGCTT
618880 GGTTGTTAGG
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
17 6 0.24
18 10 0.40
19 9 0.36
ACGTcount: A:0.13, C:0.26, G:0.13, T:0.49
Consensus pattern (19 bp):
CTAGTAGCTTTTTCTTCCT
Left flanking sequence: Indices 618333 -- 618832
TCAGAGCCGATTCACTAAGTAAATTACCCAGTTAAAGAACCGCCCCATCAGTTGAAACTCTTTAT
CCAGTCGATGAAGATCCCGAAACGGAGTCCCTAGTTCACAAGCCTGTTCCATAGCTAGCCCGGGT
TGAACCATACTCCGTGGAAGCACACGTTTTGGGACAGACAAATCGATCAGGTCGAATAATCCGTT
CCAGTTCCTGCTACCCCTCTTGCCGCTCGGCATGAAGTTGAATGTCCGAGAAGATCGGACAGAGC
TTAGTCCTCATCCCTTCGTTCCTTCTTCCTAGGAGCTAAAGGTCTTATTCCCTTAAGCAGTCTGT
AGGCCCTAGGTACTGTCCCTCTTACAACCCGGACGCTTCTCCTAGTGATGTTAATATCATTCTCT
CGTCCTCTAGTTCTTATTAGACTCCAAGATCTCAATTCCATTTTAGGAGAATCAGTTTGCTCCTG
TAGGTTTATATCCCTCGTTAATGCCTTCTATCTATCCCTCTCTTG
Right flanking sequence: Indices 618880 -- 619379
GGTTGTTAGGTAGCAGCTTCCTATCCTAGTAATAGTCGTTTTCTTCTTTCTTATTAGCTAGTTGG
TAGTTCCTATCCCAGTAGCTAGCCTTTCCTATCCTATCTATCTGAGTAGCAGACTATTGAGTGTC
CTAATTATTAGTATTCCACTGATAGTCCGCTCTTCCTGCATACAAGATTTAGGGCATCTCAACAA
TACCATGCTTGTAGGGCCGCCACGTGAAGCTCATCGGATGACAAATAAAGAGCCTGGCCATCTTC
GCATCGAACTTCCCGGCTTCAATGTTCTCAATTGCAAGCATCTCCGGGACATAATCTTTCAGCTT
CCCCAGGTCCGGAAGCGGCAATCTCATATACAGCTTAGGAAAATACTGGTCCAGCCATGCATAGA
AGTAGTGGACCGGGAATTCCGCATTGCACTGGCCTGGACCCAGTTTCTCTTGGGCAACAGCGCCC
AAACCGTAATAAATGCTGGCAAGGACGGCCGGAGCTATGGCTACT
Found at i:650631 original size:20 final size:19
Alignment explanation
Indices: 650606--650649 Score: 54
Period size: 20 Copynumber: 2.3 Consensus size: 19
650596 GGTCCCCTGA
650606 TTTAC-TAACTGACATCTTT
1 TTTACTTAACTGAC-TCTTT
*
650625 CTTTACTTAACTTACTCTTT
1 -TTTACTTAACTGACTCTTT
650645 TTTAC
1 TTTAC
650650 ACAACCATCG
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
19 5 0.23
20 10 0.45
21 7 0.32
ACGTcount: A:0.23, C:0.23, G:0.02, T:0.52
Consensus pattern (19 bp):
TTTACTTAACTGACTCTTT
Left flanking sequence: Indices 650106 -- 650605
TGCGCAAACAGAAAGCGCAAGGATGCTATGCTGTCGACCACACCTCCTTTCTCTTCCTTCTTTCT
GCTCTTTTTGCCATTTCGATTTTTTATGTGTGTCCTGCTCCGGCAAGGGGAAGGGAATACAATTG
ACAGTTACAGTAAGCAGCAGGGACCCTCCGAAGCTCTGTTTCGGCCATCTCCGGGCAGGATTTCT
GGTCCCTGGGAATTCTAGTTATCTAGATTTAGTAGAGCTTATATATGTGTGGATTTGGAAGGCTT
CTATCTTGGCTATTGCTTATGACTCCGCGGCCCTTTATTCGACTTAAAACCATTTCCGTCTCGCT
GCTATTTATTCTCTTTTTACCTAAAAAACTTTCCATCCGACCTATATCGAAGCAGATTCCAAGAT
ATTGCACGCAACATAAGCGTTGTGCCTTTCTTTGTAGGCCTCCACAGGGCTTTCCGAAGCAGAGC
GAATAGTAGACAATCCGTTAACGTCAGTGAGGCTGGGTCCCCTGA
Right flanking sequence: Indices 650650 -- 651149
ACAACCATCGCGATGTTAGCTCAGCGGGTGACGAATCAAAGAGGGAATCTCATTTGAGACTCAGC
GCTTGCCTCTCTTTCTTTGTATAGTATGTTCGTGTGTTTGGGCGACTGGACGCCGTGTGGTTAGC
TGAAGCAGACAATTTGACTATCCTAGCAGCTACAGCTGCAGAGAGAAGTCTCTGTTCACGTATTC
GCCTTAGGTTTAGGTAGTAGATGCCGTCGAATTTGCATTCCCATTCAATGAAGGTTTGACGCAGC
AGGCTTGATTAGGTTGTATAGCTGGATCTGGTTGATTAGGGACGTCCTGGATTATATTTGCGAAA
AAGGGTAGCAGGATTAGCGAACATTCTTGGGTTTGCTGGAGAAGCTGGATTGCGTGATTAGCTTG
CTAGAATAGGTTGCTTGAGTTGCGAGATCCCGTTGATCAGCATGAATTCAAGGAATATCAAGCGT
CGAATAGCTTGACTGGACAGGCTATCTTGACTAACTAGCTTGATT
Found at i:651917 original size:18 final size:17
Alignment explanation
Indices: 651895--651927 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
651885 AAAAAATAAA
651895 AAAAAACCCATTGGAAT
1 AAAAAACCCATTGGAAT
651912 AAAAAACCCATTGGAA
1 AAAAAACCCATTGGAA
651928 AACCAATAGG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.55, C:0.18, G:0.12, T:0.15
Consensus pattern (17 bp):
AAAAAACCCATTGGAAT
Left flanking sequence: Indices 651395 -- 651894
CGTATACTTATATCTTTTTGTGCATCATGTCATGAAACAAGGTGTGGTCATTGCTCCCCTATCTA
GTAAGGTCGCACCTGCGTTCTTCAGGCCGAACGGCATGACTCTGTAGCAGAAGAGAAGCCCCCCT
ATCTGATATGGTAATGAACGACGTCTTCTCCCGGTCCTCTTCGGCTATTTGGATCTAGTTATAGC
CACCCATCCATAAAAAAAAGATAGCAGGCTATGGCCCGCCCGCCGTATTGTCCACCAGGATGTCT
ATGTGAGGGAGAGGAAAGTCGTCTTTGGGGCTCGCCTTGTTGAGGTTCCTGAAGTCAATGCACAT
CCGAACTTTCCCGTCTTTCTTGGGTACCGGAACTATGTTGGCCAGTCACTCTGGATAGTGTGAAA
CCAATAGGAAGCGGGGTCCTATCTTTAGCTGAAAAAAAACACCCTTGTACATAGGGAACCCCAAA
ACCAATAGGAAGCGGGGTCCTATCTTTAGCTGATAAAAAAATAAA
Right flanking sequence: Indices 651928 -- 652427
AACCAATAGGGTCCTATCTTTAGCGGTAAAAAAAGGTACAGCAAGTTACAGCCCAATAGGGAAGC
GGATCCTATCTTTAGCTGTAACAAAAGGCTGTTTAGGATTCATGACATAATCGGAAGTTGAAGGA
TGGGATGTAAAATTGGAGTTTATACATTCCACGGTTCCTGTACAGACATGTACTAATGCCTCCCT
CTGTAATTAGCTCCTCTTCATTTTAAGATTAAATGTATTCCCCAATGTAGGAAAACAGCCCCTCC
GAAATGGTTCGGCATGTCTTAAAGTGAGAAGGGAGTGAAATGCCAGGGTTTGGCAACATGATCCA
CTAGTACAGGAATCGCCTTGGAAGGTCCTAAAGCTTTGAGTGCTCGGAGAGAAAAAGCTCAACTT
GAAAATTAGGGGCGTGGCCTGTGTCCAAGAGGAAACTCCTGGTTCCCGTGCTATATCTGTTAAAT
CAGATTGTAAAGTGATACTTCAGTGTGTCCTAGCTACTTAAAAAA
Found at i:729175 original size:17 final size:17
Alignment explanation
Indices: 729155--729192 Score: 76
Period size: 17 Copynumber: 2.2 Consensus size: 17
729145 AGAAGTCACC
729155 AGCTTTCATTGGCGGGA
1 AGCTTTCATTGGCGGGA
729172 AGCTTTCATTGGCGGGA
1 AGCTTTCATTGGCGGGA
729189 AGCT
1 AGCT
729193 CGACTGAAAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.18, C:0.18, G:0.34, T:0.29
Consensus pattern (17 bp):
AGCTTTCATTGGCGGGA
Left flanking sequence: Indices 728655 -- 729154
TTCCTGTCAATATGCCGATTCATCAAAGTATACGATAACATAGAATTATGATAACCTATCTTAGT
AATATATCTCATATTGGTTACCATTTTCCGTTGTCGCAAAGAAAAAAATTCTTTCACTGAACTCT
CATTTCCACTCTCATCTTTCGAGTTCTCTCTATCACTGGTACTAGTAGGAGTCTGATTCTGTTCC
TGTGGATCTCGCAACTCAGAGGTCATATTATTACATTCCGTAGCATTACCATGACCTAAGCCAAC
TCTATTCGTAGAATATGAGCAGGTCATGATGGCTTTCATTTCAGGTAAAATACACCAATTAAGGC
CTGGCTCCCGACCGGTAGTTTGAGGTTTTCTACCAACCATAAGAAGAATAGTGATAGTCATAGTA
GGCATTTTATTTCGTCTGTGTTCAGTCCTTCTGGGTGTAGAACATTGGCTCATGTGTCCAATGGG
GGGCACCATCTGACTGTACCCAGTTCAGATTCTTCAGAAGTCACC
Right flanking sequence: Indices 729193 -- 729692
CGACTGAAAGAGATCATCCTAGCTGACGATAATGGTCAACCTGTCACGACCGTTGTGGGTCAAAT
AGAATAGATGTAAGTAAGGTTAGATGAGAAGTCATTCTTGCTCTCGTCAGGCTGAACTGGAACCC
AATTCCAACGCTTCTGTACACTCAGGAACATAACCCACTGTTAAGAGGGTAGCTACAATGATTCC
CAATCCGACAGCTGTCATCGTTGCTCCGGTAGCTGTAGCTGGTATCTCTAGTGTGTTAAAGGGTG
GTTGATTCTCGAGCAATACTCCTACGATCTCGGATACATCTCTAGCTTCATAAAATTGCAGCTTT
TCTTGGAATTGCGGGGTAGTGTAATCCTGGTTAAAGAAAGGACATAATGATTCTAATCGGGGGAA
ATAATTCATATGGTTCTCCGAATAGGGGGGCGAGAATGAGAACCACACTGTACATCCTAACCCCA
ATATAACTAGCACTAAGAAGCGTCCATACTTACCGTTGTATAAAG
Found at i:730120 original size:15 final size:15
Alignment explanation
Indices: 730100--730146 Score: 94
Period size: 15 Copynumber: 3.1 Consensus size: 15
730090 ATTAGTTACC
730100 ACAGTGTCAGGCGGA
1 ACAGTGTCAGGCGGA
730115 ACAGTGTCAGGCGGA
1 ACAGTGTCAGGCGGA
730130 ACAGTGTCAGGCGGA
1 ACAGTGTCAGGCGGA
730145 AC
1 AC
730147 TGCAGCTGAC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 32 1.00
ACGTcount: A:0.28, C:0.21, G:0.38, T:0.13
Consensus pattern (15 bp):
ACAGTGTCAGGCGGA
Left flanking sequence: Indices 729600 -- 730099
CCGAATAGGGGGGCGAGAATGAGAACCACACTGTACATCCTAACCCCAATATAACTAGCACTAAG
AAGCGTCCATACTTACCGTTGTATAAAGTTCCGACATTGACTAGAATTGGCTTTAAATCCCATAG
AACAACCTCCTTTAAGCTATGGATAGACATACACTGCCCTATCCCCCTGTTCTTACCGGAATCGA
TATACTTGGTTAAACCCAGCCCCCTACTAATTAATCGGAGTATGGAAATGTCTTGTAGAGTAAAC
CGATGGGTGGTCCAGGTTGGCTGCATGGGAAAATTCATTTTTTTGAAATTGTAATCGATATCGAT
TATTATTGATGTTTTTTTTCTATTAGTATTTAACCATTCCAATAACTCCGGCGGTAGTTCAGGGG
GATTCTCCCTTAACCTCTCAATAAAAGAAGAATTATTCCCCCCGTCATCGGGACTGCCTAAAAAA
AAATAAAGCAACAACACAGCTGTTTTTACAAAGTTATTAGTTACC
Right flanking sequence: Indices 730147 -- 730646
TGCAGCTGACTCAGACCCTTTCTCTGTCAGCAATTTCTCCTCCAGCGAGTCGAAGTCCTTCCATA
GTGCAAACATTTGTTGGTTCTCGATCTCAGATAAGAAATTAATGAAATCTTTTAACATACCTAAT
TTGTGTTTTCTCAGAGTTTCGACTTTGGCTTTCCCTTTATTTCGAAAGGTGTCTCTACCCTGGAC
CATCATAGTGTACCATGATATACTCCGCTAATTGTGTACCATGAAATTATTCTCATTTAGACTTT
CGCTTCAGCTCTGAGAGGTTTTCGGGAAAATCATCCGAATACATACAGCTGTAGACCGGCATTGA
TAGAGGATTGTGCTTCTGTGATGTTCTGTGATGTCTCTATCATGGGATTTCCTACTATTTGTATA
CCCTATGTTAACCTAATAGTGCCTTACCCATTTCTAAATGAGGTTGATGTATCCCTCTAGCTAGT
ATGCTAGAGAACGACATCGGTTTTACTCTAAAGGTGTACACTTTG
Found at i:742722 original size:18 final size:18
Alignment explanation
Indices: 742682--742724 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
742672 ACCGCCCTGC
742682 CATAGTCGCGAGTCTGTTT
1 CATAGTCGCGAG-CTGTTT
742701 -ATAGTCGCGA-CTGTTGT
1 CATAGTCGCGAGCTGTT-T
742718 CATAGTC
1 CATAGTC
742725 AACAAGGTGG
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
16 5 0.23
17 1 0.05
18 16 0.73
ACGTcount: A:0.19, C:0.21, G:0.26, T:0.35
Consensus pattern (18 bp):
CATAGTCGCGAGCTGTTT
Left flanking sequence: Indices 742182 -- 742681
AGTGATTCACCGAAGCGACGAGACCTTGAAAGCTGCTTTTTCAAGTGTCAGTAGCGGGACGTTCT
GTCAATCGGGGAAGGTTATTGGTGACAACACCTGGAGATATCAGAAGTGAGAATGCTGACATGAG
TAACGAGAAATCCTGTGAAAAACACGATCGCCTGCCAGTGGAAGGTTTTCTGCGTTCAGTCAATC
TACGCAGAGTGAATCGGTCCCTAAGGAACCCCCGAAAGGGCCGCCGTCCGATGGGTACACGAAAG
TGACGAAGTTGCTTTGACTACAGAACCATGCCTGTCTGTTGGAGCGAATTGGATGATCGGGCCGA
GGGCTGCCCCCTCTTCCCCTCACTCTCCTTTCCCTAATATGAACCTTGAGTCATCAAAGCCTTTC
TGACTCGGCCTGGCCCGGTCGCCCTACGCGACTGGCGCTTCAAAAGGCGAAACTCTCGTCGTAGT
TTGGCGACAGTAGGGGTCGCGAGAGAGCAGAGCGTACCGCCCTGC
Right flanking sequence: Indices 742725 -- 743224
AACAAGGTGGAAACTTCCAGGAAAAAACTTCGAATTGGGAGGGTGATCCTCCCGGTGAACTGACC
GTACCCCAAACCGACACAGGTGAACAAGTAGAGTATACTAGGGCGCTTGAGAGAACCATGTCGAA
GGAACTCGGCAAAATGACCCCGTAACTTCGGGAGAAGGGGTGCTCTCCTATCTTTTGATTAGGAA
AGCGGCACATACCAGGGGGTAGCGACTGTTTATTAAAAACACAGGACTCTGCTAAGTGGTAACAC
GATGTATAGAGTCTGACACCTGCCCGGTGCTGGAGGGTCGTAAGGAGAAGTGTTATAAGCTTTGA
ATGGAAGCCCCCGGTAAACGGCGGCAGTAACTCTAACTGTCCTAAGGTAGCGAAATTCCTTGTCG
CATAAGTAGCGACCTGCACGAATGGTGTAACGACTGCCCCGCTGTCTCCGACATGGACCCGGTGA
AATTGAATTCTCCGTGAAGATGCGGAGTACCAACGGCTAGACGGT
Found at i:758421 original size:19 final size:19
Alignment explanation
Indices: 758397--758443 Score: 62
Period size: 18 Copynumber: 2.5 Consensus size: 19
758387 CCCTCTCTTG
*
758397 CTAGTAGCTTTCTTCTTTC-
1 CTAGTAGCTTT-TTCTTCCT
758416 CTAGTAGC-TTTTCTTCCT
1 CTAGTAGCTTTTTCTTCCT
758434 CTAGTAGCTT
1 CTAGTAGCTT
758444 GGTTGTTAGG
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
17 6 0.24
18 10 0.40
19 9 0.36
ACGTcount: A:0.13, C:0.26, G:0.13, T:0.49
Consensus pattern (19 bp):
CTAGTAGCTTTTTCTTCCT
Left flanking sequence: Indices 757897 -- 758396
AACAGCCGCAGTTTCTACTCCGGCTAATAGTTTAGCACATTCTTTGTTGTTACTATGGGGTCCTG
AAGCACAAGGAGATTTTACTCGTTGGTGTCAACTAGGTGGTCTGTGGACTTTTGTTGCTCTCCAT
GGCGCTTTCGGACTAATAGGTTTCATGTTACGTCAATTCGAACTTGCTCGATCTGTTCAATTACG
ACCTTATAATGCAATTGCATTCTCTGGCCCAATTGCTGTTTTTGTTTCCGTATTCCTGATTTATC
CACTAGGTCAGTCTGGTTGGTTTTTTGCGCCTAGCTTTGGCGTATCAGCTATATTTCGATTCATC
CTTTTTTTTCAAGGGTTTCATAATTGGTTGATGCCCTTCTTGCTTCTTCTTGCCTGTCGTCTTTC
TTACTAAGACTCCTAATTAGCATCCAACAGATCCATTCCATTTTAGGAGAATCAGTTTGCTCCTG
TAGGTTTATATCCCTCGTTAATGCCTTCTATCTATCCCTCTCTTG
Right flanking sequence: Indices 758444 -- 758943
GGTTGTTAGGTAGCAGCTTCCTATCCTAGTAATAGTCGTTTTCTTCTTTCTTATTAGCTAGTTGG
TAGTTCCTATCCCAGTAGCTAGCCTTTCCTATCCTATCTATCTGAGTAGCAGACTATTGAGTGTC
CTAATTATTAGTATTCCACTGATAGTCCGCTCTTCCTGCATACAAGATTTAGGGCATCTCAACAA
TACCATGCTTGTAGGGCCGCCACGTGAAGCTCATCGGATGACAAATAAAGAGCCTGGCCATCTTC
GCATCGAACTTCCCGGCTTCAATGTTCTCAATTGCAAGCATCTCCGGGACATAATCTTTCAGCTT
CCCCAGGTCCGGAAGCGGCAATCTCATATACAGCTTAGGAAAATACTGGTCCAGCCATGCATAGA
AGTAGTGGACCGGGAATTCCGCATTGCACTGGCCTGGACCCAGTTTCTCTTGGGCAACAGCGCCC
AAACCGTAATAAATGCTGGCAAGGACGGCCGGAGCTATGGCTACT
Found at i:796678 original size:6 final size:6
Alignment explanation
Indices: 796667--796691 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
796657 TTGTTGAAAA
796667 CAGTAT CAGTAT CAGTAT CAGTAT C
1 CAGTAT CAGTAT CAGTAT CAGTAT C
796692 GGGGGTCCTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32
Consensus pattern (6 bp):
CAGTAT
Left flanking sequence: Indices 796167 -- 796666
TCGACTTTGAATCTGGGCAAAAAAGCGATTGTAACGAAAAACACGGTGTTTATGCAACTTTCTCA
TTTTGATGTCTCAACCGAGAAGTTAGTTTGCTTTTCCTCTTTCCTCGCTCAAGCCGAAACTAGAG
TTCAGTTCTTTTGAATCAAGGACTGTAACCCGCAGGGGCAGGCTTATTTTCCTGTTCTTAGAATA
GAATTCTTAAAGGGTTGTCCTACAGAAGAGAATTCGCCTTGCTGTCAAGAACTGGAGCAACTTGA
AAGCATATCTACCGAGGAGCTAATGAATGTGCGGATCATTCGATATCGAGATCAGGAGACATCGG
ATTTGGAGAAGATCGCTTTGTGCCTGACTCCACTCATGTAACTAGCCCCTATTGTATTGAGGAAG
GAACCGCCTTCTACTTGAAGGCGGATGTTGCTAACAGTGGGGTTCGGAAGAGCGGTCGACACTTT
AACTTCGAGATTGAATCTCTTTCTTGTTCTTCCTGTTGTTGAAAA
Right flanking sequence: Indices 796692 -- 797191
GGGGGTCCTCCCCTGAAAGCAAGACAACTTGACGGTATGACCTTTCGATTTATAGAGAACTTCCT
CCTTTCCAAGTCGGCACTGTGCCGGTACATACTTCAACTTCGAGAATGTCTTCTCTTTCATGCGC
AGTTTCCTTCCAAACTTATCTAACTAGCCCCTGAAAACAGTTCTTGATGGAGAGCTTCCCCTCAT
TGTAAACCATTGTTCGTCTAATCCTGCTGTCTCCTACGTAGGCTGAACTCCGGTTGGTCATCTTT
CTCGTTCCCAGGTGCCATTCTTTTTCAAGGCTGGAAAGTCGATTCAGTACTATGCCTTTCTCATC
TCTTAGTTCACTAAGGAAGTCTTGCTTTGACTTCTCAGTTAGTGTAGCTAGCTAGCTCTTCACAT
TCTCTCTTTTGTGCTCGGGTGCTCGAAGCAAGGGAGGAATCTAACTACCCCCTTTAATAAGGGAA
CCGCCCGAAGGCGGAAACTTATCGTAATGGAACTCTTCTGGTCGA
Done.