Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_053763
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 802707
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Found at i:14314 original size:18 final size:18
Alignment explanation
Indices: 14291--14333 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
14281 CCACCTTGTT
14291 GACTATGACAACAG-TCGC
1 GACTATGA-AACAGATCGC
14309 GACTAT-AAACAGACTCGC
1 GACTATGAAACAGA-TCGC
14327 GACTATG
1 GACTATG
14334 GCAGGGCGGT
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
16 5 0.23
17 1 0.05
18 16 0.73
ACGTcount: A:0.35, C:0.26, G:0.21, T:0.19
Consensus pattern (18 bp):
GACTATGAAACAGATCGC
Left flanking sequence: Indices 13791 -- 14290
ACCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTCGGAG
ACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTACC
TTAGGACAGTTAGAGTTACTGCCGCCGTTTACCGGGGGCTTCCATTCAAAGCTTATAACACTTCT
CCTTACGACCCTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCACTTAGCAGAGT
CCTGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCCTAATCAAAAGATAGGA
GAGCACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCTTCGACATGGTTCTCTCAAG
CGCCCTAGTATACTCTACTTGTTCACCTGTGTCGGTTTGGGGTACGGTCAGTTCACCGGGAGGAT
CACCCTCCCAATTCGAAGTTTTTTCCTGGAAGTTTCCACCTTGTT
Right flanking sequence: Indices 14334 -- 14833
GCAGGGCGGTACGCTCTGCTCTCTCGCGACCCCTACTGTCGCCAAACTACGACGAGAGTTTCGCC
TTTTGAAGCGCCAGTCGCGTAGGGCGACCGGGCCAGGCCGAGTCAGAAAGGCTTTGATGACTCAA
GGTTCATATTAGGGAAAGGAGAGTGAGGGGAAGAGGGGGCAGCCCTCGGCCCGATCATCCAATTC
GCTCCAACAGACAGGCATGGTTCTGTAGTCAAAGCAACTTCGTCACTTTCGTGTACCCATCGGAC
GGCGGCCCTTTCGGGGGTTCCTTAGGGACCGATTCACTCTGCGTAGATTGACTGAACGCAGAAAA
CCTTCCACTGGCAGGCGATCGTGTTTTTCACAGGATTTCTCGTTACTCATGTCAGCATTCTCACT
TCTGATATCTCCAGGTGTTGTCACCAATAACCTTCCCCGATTGACAGAACGTCCCGCTACTGACA
CTTGAAAAAGCAGCTTTCAAGGTCTCGTCGCTTCGGTGAATCACT
Found at i:44354 original size:16 final size:16
Alignment explanation
Indices: 44330--44360 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
44320 CAAGCCTGCG
*
44330 AGTCCAGTATTTGACT
1 AGTCAAGTATTTGACT
44346 AGTCAAGTATTTGAC
1 AGTCAAGTATTTGAC
44361 ATAGGTTGGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.29, C:0.16, G:0.19, T:0.35
Consensus pattern (16 bp):
AGTCAAGTATTTGACT
Left flanking sequence: Indices 43830 -- 44329
GTAAGAAGAAGCGGGCTAAAGCCAGAAAAGGGGAGTTAGTTTATGGGCCAGTTTGTGATCCAATT
TCCCTTCTAACAAGATCGAGTTTACCATGTCCTTAAAGAATAAATTCAGTCCAGCTTACCCGATC
TGACGGAACGGAATGAAACGGAAGTTCGGAACGTAACTATCAATAAGTGGGCCCAGAAAGATACG
GCTTTTAAAGCAGCATAGCTTACTTGCTTCTTTCTTCTCTTTCAGTTAGGGAGTGCTTATAAGTA
ACCTAATAGGAGGTGCAAGACGAGTGAGTTCAGGGCCGTTGAAGTTTTTGCCCGAACGAACGGAA
CGCTCTCAACAGCAAGAGCAAAAGGGGGATAACAAGCATAACAGGAGGATAAAACAAGTAGGCCT
TGAAGTAGTAGGTTACAGGAGAGCATTCAATCTATCTCTCTTTCTTTCTTTAGTCTTTCTAGTAC
CTTTCCTTGTTTTTAGGTCAGTTAATAGAGCCAGTCAAGCCTGCG
Right flanking sequence: Indices 44361 -- 44860
ATAGGTTGGAGCACATCTTGGTTTGTACTTCTTTTGTAGCTTTGGGCACCTCGGGTGTGGTGACC
GAGCGCTTTTATCCCAATGGCTACGTTTAAATCCCCGCCGCTCGGTTCGTCTAAAGGCTGGAGTG
AGGGGAACATCTTCAGTGAAGCTTCCAAGTGGTAGTTATTCGAAGAAATGCGAACAAGACTCAAA
AATATCCATCTCCATCTTCAGCTGCCTCTCAAACGTTGCTTGAAAGCTATCTCGAATCCCGTGGC
ATCGACAACAAGGCAGAGCACAGGGAAATTTTCTTCACTGGGACCTACGGAACATAAGCATTAGT
CTGATAATTAACCCGTTCTCTATGAACCTGACTCCTATGATCTTAGAGCCTTCGCTTCCCCTCCC
ATCGCCCATGCAGAGACGAAAGGGAATCGGTCAGGCCTAGCGCTTAAGGCTTGACGCTCCTCTCC
TGTTGATTTGTTTTGTCACCTCGCTTCGTTTGACTTTCAACTATG
Found at i:103252 original size:20 final size:19
Alignment explanation
Indices: 103211--103254 Score: 54
Period size: 20 Copynumber: 2.3 Consensus size: 19
103201 CGATGGTTGT
103211 GTAAAAAAGAGTAAGTTAA
1 GTAAAAAAGAGTAAGTTAA
*
103230 GTAAAGAAAGATGTCAGTT-A
1 GTAAA-AAAGA-GTAAGTTAA
103250 GTAAA
1 GTAAA
103255 TCAGGGGACC
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
19 5 0.23
20 11 0.50
21 6 0.27
ACGTcount: A:0.52, C:0.02, G:0.23, T:0.23
Consensus pattern (19 bp):
GTAAAAAAGAGTAAGTTAA
Left flanking sequence: Indices 102711 -- 103210
AATCAAGCTAGTTAGTCAAGATAGCCTGTCCAGTCAAGCTATTCGACGCTTGATATTCCTTGAAT
TCATGCTGATCAACGGGATCTCGCAACTCAAGCAACCTATTCTAGCAAGCTAATCACGCAATCCA
GCTTCTCCAGCAAACCCAAGAATGTTCGCTAATCCTGCTACCCTTTTTCGCAAATATAATCCAGG
ACGTCCCTAATCAACCAGATCCAGCTATACAACCTAATCAAGCCTGCTGCGTCAAACCTTCATTG
AATGGGAATGCAAATTCGACGGCATCTACTACCTAAACCTAAGGCGAATACGTGAACAGAGACTT
CTCTCTGCAGCTGTAGCTGCTAGGATAGTCAAATTGTCTGCTTCAGCTAACCACACGGCGTCCAG
TCGCCCAAACACACGAACATACTATACAAAGAAAGAGAGGCAAGCGCTGAGTCTCAAATGAGATT
CCCTCTTTGATTCGTCACCCGCTGAGCTAACATCGCGATGGTTGT
Right flanking sequence: Indices 103255 -- 103754
TCAGGGGACCCAGCCTCACTGACGTTAACGGATTGTCTACTATTCGCTCTGCTTCGGAAAGCCCT
GTGGAGGCCTACAAAGAAAGGCACAACGCTTATGTTGCGTGCAATATCTTGGAATCTGCTTCGAT
ATAGGTCGGATGGAAAGTTTTTTAGGTAAAAAGAGAATAAATAGCAGCGAGACGGAAATGGTTTT
AAGTCGAATAAAGGGCCGCGGAGTCATAAGCAATAGCCAAGATAGAAGCCTTCCAAATCCACACA
TATATAAGCTCTACTAAATCTAGATAACTAGAATTCCCAGGGACCAGAAATCCTGCCCGGAGATG
GCCGAAACAGAGCTTCGGAGGGTCCCTGCTGCTTACTGTAACTGTCAATTGTATTCCCTTCCCCT
TGCCGGAGCAGGACACACATAAAAAATCGAAATGGCAAAAAGAGCAGAAAGAAGGAAGAGAAAGG
AGGTGTGGTCGACAGCATAGCATCCTTGCGCTTTCTGTTTGCGCA
Found at i:135929 original size:48 final size:48
Alignment explanation
Indices: 135836--135930 Score: 118
Period size: 48 Copynumber: 2.0 Consensus size: 48
135826 TTAGACTTCA
* * *
135836 CATGGTAAGCTCCTGACGTCTGGACAAGGCCAGCTCCATGAGTCCGAC
1 CATGGTAAGCTCCTGACGACTAGACAAGGCCAGCTCCATCAGTCCGAC
* * * * *
135884 CATGGTACGCTCCTGATGACTAGACAAGGCCTGCTCGATCTGTCCGA
1 CATGGTAAGCTCCTGACGACTAGACAAGGCCAGCTCCATCAGTCCGA
135931 TCAAGGGCTG
Statistics
Matches: 39, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
48 39 1.00
ACGTcount: A:0.22, C:0.31, G:0.26, T:0.21
Consensus pattern (48 bp):
CATGGTAAGCTCCTGACGACTAGACAAGGCCAGCTCCATCAGTCCGAC
Left flanking sequence: Indices 135336 -- 135835
AAATAATCAAACTAAGATCAAGAACTTTTTCGAAGGAAAGACCATTGTGAAGACATAACATAAGA
AGGCTGATTCGCGGAAGACTGTCCAGGTCCAAATAAGAGGCTTCAACGTTTGAGAATAGCTAGCT
GTTTGAGCGAGTTGCTGCGTCGGCATCAACAGAATCAAAACTATGGTTTTCTCGTTCTGAGATAC
GAATAAGATAGATATTCTTTCCGTCCGGTTCTCGCTTTACGTAAAGATTCAGATCAAGAGTCAGA
TGAATCTCCTCCTTACGTCTCATTCCTGTAAAGTATGTCCTAACGTTCTTGAATACCGATTAGGA
GGAGGCTTGACGTCTGAGACTGGGATGCGTGAAGAAGTCATCGTGTCAGAATGAAAGGCACCCTC
GGCCCGAAGGCCTTCGCCAATAGCTCAAAAAAGTGCTTTACTCCTTGGGCGTGGTCGAAGAAGTT
TTTTAGGTGTGGGTGGGTTTCAGAATTGTGTATTTTTAGACTTCA
Right flanking sequence: Indices 135931 -- 136430
TCAAGGGCTGGGCTGCTCCACTAGGACGAAGATGGGCTGTGTGAGGTAGGTTCCCTGAGTTGCTC
TTAGTTTTGAATGAGAGGCCGATGAGCCCGAGGGTTTTGTTCCTGTACTTAATGAGTCCGAGGCT
TACGTTCTGGTCCTGGACTTTCTGAGGCAGAAGGTGCCGTTCTGGTAAGGTAATCTCCTGATGAC
TGTGCAAGGGCAGCTCGATGAGTTCGACCAGGGTAAACTCCATGAGTCCGACCAAGGGCAGCTCC
TAGAGCAGGGTAAGCTCCTGATGACTGCACAAGCTAAGCTCGATGAGGACGAACAAGGGCAGTTC
CATGACTCCGAAGAAGGGCAGCTCGATGAGTGCGACCAAGAGCAGCTCGATCAGTCCAATCAAGG
GCAGTGAGGTAAGGTGCCATAGTTCACTTTTGAAAGGGAGGCCTTTGCAACGGTTATGTTGCTGG
ACTTGATGACTCCGATGGTTACGTTCTGTGAAGGGAATCTCCTCC
Found at i:136190 original size:24 final size:24
Alignment explanation
Indices: 136130--136190 Score: 70
Period size: 24 Copynumber: 2.5 Consensus size: 24
136120 GATGACTGTG
* *
136130 CAAGGGCAGCTCGATGAGTTCGAC
1 CAAGGGCAGCTCCATGAGTCCGAC
* *
136154 C-AGGGTAAACTCCATGAGTCCGAC
1 CAAGGG-CAGCTCCATGAGTCCGAC
136178 CAAGGGCAGCTCC
1 CAAGGGCAGCTCC
136191 TAGAGCAGGG
Statistics
Matches: 29, Mismatches: 6, Indels: 4
0.74 0.15 0.10
Matches are distributed among these distances:
23 4 0.14
24 21 0.72
25 4 0.14
ACGTcount: A:0.26, C:0.30, G:0.30, T:0.15
Consensus pattern (24 bp):
CAAGGGCAGCTCCATGAGTCCGAC
Left flanking sequence: Indices 135630 -- 136129
ATGTCCTAACGTTCTTGAATACCGATTAGGAGGAGGCTTGACGTCTGAGACTGGGATGCGTGAAG
AAGTCATCGTGTCAGAATGAAAGGCACCCTCGGCCCGAAGGCCTTCGCCAATAGCTCAAAAAAGT
GCTTTACTCCTTGGGCGTGGTCGAAGAAGTTTTTTAGGTGTGGGTGGGTTTCAGAATTGTGTATT
TTTAGACTTCACATGGTAAGCTCCTGACGTCTGGACAAGGCCAGCTCCATGAGTCCGACCATGGT
ACGCTCCTGATGACTAGACAAGGCCTGCTCGATCTGTCCGATCAAGGGCTGGGCTGCTCCACTAG
GACGAAGATGGGCTGTGTGAGGTAGGTTCCCTGAGTTGCTCTTAGTTTTGAATGAGAGGCCGATG
AGCCCGAGGGTTTTGTTCCTGTACTTAATGAGTCCGAGGCTTACGTTCTGGTCCTGGACTTTCTG
AGGCAGAAGGTGCCGTTCTGGTAAGGTAATCTCCTGATGACTGTG
Right flanking sequence: Indices 136191 -- 136690
TAGAGCAGGGTAAGCTCCTGATGACTGCACAAGCTAAGCTCGATGAGGACGAACAAGGGCAGTTC
CATGACTCCGAAGAAGGGCAGCTCGATGAGTGCGACCAAGAGCAGCTCGATCAGTCCAATCAAGG
GCAGTGAGGTAAGGTGCCATAGTTCACTTTTGAAAGGGAGGCCTTTGCAACGGTTATGTTGCTGG
ACTTGATGACTCCGATGGTTACGTTCTGTGAAGGGAATCTCCTCCGTTACGGCCTTCTGGGGGGC
TTTCCAGGAGTCTTCCATCTCGTTCCTAGGGCTTCTTTCCTCTAAAGTTAGGCTTGACAGAATCC
CAATTCGAAAGTCAACCTGAGGAAGCCAAATAAGCTCACCAACCGACAAGCGAGAGAGGAAAGAC
GAAGAAAAAAACAAGAAGAGGGGCGGCGCCCAGGTCTTAGCAAATGTGCCATCTTCGAGGTATTA
GAAAGAAATAAGAAAGATTTCGAATGCTAGAGAATCGATAAATGG
Found at i:136319 original size:24 final size:24
Alignment explanation
Indices: 136273--136324 Score: 59
Period size: 24 Copynumber: 2.2 Consensus size: 24
136263 CCGAAGAAGG
* * *
136273 GCAGCTCGATGAGTGCGACCAAGA
1 GCAGCTCGATCAGTCCAACCAAGA
* *
136297 GCAGCTCGATCAGTCCAATCAAGG
1 GCAGCTCGATCAGTCCAACCAAGA
136321 GCAG
1 GCAG
136325 TGAGGTAAGG
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.29, C:0.27, G:0.31, T:0.13
Consensus pattern (24 bp):
GCAGCTCGATCAGTCCAACCAAGA
Left flanking sequence: Indices 135773 -- 136272
GGCGTGGTCGAAGAAGTTTTTTAGGTGTGGGTGGGTTTCAGAATTGTGTATTTTTAGACTTCACA
TGGTAAGCTCCTGACGTCTGGACAAGGCCAGCTCCATGAGTCCGACCATGGTACGCTCCTGATGA
CTAGACAAGGCCTGCTCGATCTGTCCGATCAAGGGCTGGGCTGCTCCACTAGGACGAAGATGGGC
TGTGTGAGGTAGGTTCCCTGAGTTGCTCTTAGTTTTGAATGAGAGGCCGATGAGCCCGAGGGTTT
TGTTCCTGTACTTAATGAGTCCGAGGCTTACGTTCTGGTCCTGGACTTTCTGAGGCAGAAGGTGC
CGTTCTGGTAAGGTAATCTCCTGATGACTGTGCAAGGGCAGCTCGATGAGTTCGACCAGGGTAAA
CTCCATGAGTCCGACCAAGGGCAGCTCCTAGAGCAGGGTAAGCTCCTGATGACTGCACAAGCTAA
GCTCGATGAGGACGAACAAGGGCAGTTCCATGACTCCGAAGAAGG
Right flanking sequence: Indices 136325 -- 136824
TGAGGTAAGGTGCCATAGTTCACTTTTGAAAGGGAGGCCTTTGCAACGGTTATGTTGCTGGACTT
GATGACTCCGATGGTTACGTTCTGTGAAGGGAATCTCCTCCGTTACGGCCTTCTGGGGGGCTTTC
CAGGAGTCTTCCATCTCGTTCCTAGGGCTTCTTTCCTCTAAAGTTAGGCTTGACAGAATCCCAAT
TCGAAAGTCAACCTGAGGAAGCCAAATAAGCTCACCAACCGACAAGCGAGAGAGGAAAGACGAAG
AAAAAAACAAGAAGAGGGGCGGCGCCCAGGTCTTAGCAAATGTGCCATCTTCGAGGTATTAGAAA
GAAATAAGAAAGATTTCGAATGCTAGAGAATCGATAAATGGCATGAAGCATTCTGCGTGAAAGGT
TGAAGCCGACTTCCTCGTCCGTCTGGCTTTCGTTCCTCATGTCAGTTTAAGTACTGTGCTGGTAG
GAAGGTCTTACTTTTCAACTAAGTTTGACGTAGTGAATAGTTCTA
Found at i:217158 original size:42 final size:42
Alignment explanation
Indices: 217103--217227 Score: 250
Period size: 42 Copynumber: 3.0 Consensus size: 42
217093 GGATGAAATG
217103 ATCAAGCAGATGATTGCGGAAATGAGGAAGGAGAATGCTGAA
1 ATCAAGCAGATGATTGCGGAAATGAGGAAGGAGAATGCTGAA
217145 ATCAAGCAGATGATTGCGGAAATGAGGAAGGAGAATGCTGAA
1 ATCAAGCAGATGATTGCGGAAATGAGGAAGGAGAATGCTGAA
217187 ATCAAGCAGATGATTGCGGAAATGAGGAAGGAGAATGCTGA
1 ATCAAGCAGATGATTGCGGAAATGAGGAAGGAGAATGCTGA
217228 CAGTCTATAT
Statistics
Matches: 83, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 83 1.00
ACGTcount: A:0.40, C:0.10, G:0.34, T:0.17
Consensus pattern (42 bp):
ATCAAGCAGATGATTGCGGAAATGAGGAAGGAGAATGCTGAA
Left flanking sequence: Indices 216603 -- 217102
TGATATATTTGCTTACATCCCAGGCGAAGGTCATAATTTGCAGGAGCATTCTATGGTCTTAATAA
GAGGAGGTAGAGTGAAAGATTTGCCAGGTGTGAAATTCCATTGTATTCGAGGAGTCAAGGATTTG
CTGGGAATTCCGGATCGAAGAAGAGGCAGATCCAAATATGGTGCGGAAAAACCCAAATCGATATG
AGCCTCTGGAACTTGTTTTTCTCGGTCAGTCGAGGGAACAACGTTACGCCCCAAAATAGAACTAT
ACGGGGCCCTTCCGAATGAGAAAGAAAAAAAAGCGCTTAGTTTCGTTGGAAAAATCAACGCAAAT
ATCATATTGACTTTTTCTCGCCCTACTTCTAAGGATAGATAGAAAAGGTTGGAGAGAGTGACTTT
CAGAAATTCTCTCCTTTCTAAAGCTGCGCAAGGCGGCCCCCCAGAAGGGTCAAAAAAGGCGGGAA
GCAGAACTGTCAAAGAATGAACCAAACCAAATGATGGATGAAATG
Right flanking sequence: Indices 217228 -- 217727
CAGTCTATATAAGAATCTTAAGGAATTTTTTAGTCGTGATAGAAACTTTTATTTCTTGATAGTTG
TTGTTGGTATCATATTGACATTTTATGGGTGGATGGGATGGTCAAACCAAATGAGGGCAAAGAAC
GCCTACGATTTAATCACTAAGGACCGAGGCCTTGCTCCCAAGGTTGAGAGCGGTTGGTGGGGCTT
TCGCGTGGAAGCTAACCCTGTTCTTGCTCATGTTCCCCTTCATGTTCCTGCTTCTAAGGCGGATG
TCGAAGCTAAGGGGGACATCCCACCCGCGCCCACTCCCGAGCCTACTGCTCATGGGAGTGTGCCT
ACTCCACCTGATGGTGGCCTTATTCCTACAGCTTCTTGTGATGCAGCAGAACCATGGCAATTAGG
ATCTCAAGACGCAGCAACACCTATGATGCAAGGAATCATAGACTTACATCACGATATCTTTTTCT
TCCTCATTCTGATTTTGGTTTTCGTATCACGGGTCTTGGTTCGCG
Found at i:217166 original size:21 final size:21
Alignment explanation
Indices: 217103--217209 Score: 92
Period size: 21 Copynumber: 5.1 Consensus size: 21
217093 GGATGAAATG
217103 ATCAAGCAGATGATTGCGGAA
1 ATCAAGCAGATGATTGCGGAA
* * * * *
217124 ATGAGGAAGGA-GAATGCTGAA
1 ATCAAGCA-GATGATTGCGGAA
217145 ATCAAGCAGATGATTGCGGAA
1 ATCAAGCAGATGATTGCGGAA
* * * * *
217166 ATGAGGAAGGA-GAATGCTGAA
1 ATCAAGCA-GATGATTGCGGAA
217187 ATCAAGCAGATGATTGCGGAA
1 ATCAAGCAGATGATTGCGGAA
217208 AT
1 AT
217210 GAGGAAGGAG
Statistics
Matches: 62, Mismatches: 20, Indels: 8
0.69 0.22 0.09
Matches are distributed among these distances:
20 4 0.06
21 54 0.87
22 4 0.06
ACGTcount: A:0.40, C:0.10, G:0.32, T:0.18
Consensus pattern (21 bp):
ATCAAGCAGATGATTGCGGAA
Left flanking sequence: Indices 216603 -- 217102
TGATATATTTGCTTACATCCCAGGCGAAGGTCATAATTTGCAGGAGCATTCTATGGTCTTAATAA
GAGGAGGTAGAGTGAAAGATTTGCCAGGTGTGAAATTCCATTGTATTCGAGGAGTCAAGGATTTG
CTGGGAATTCCGGATCGAAGAAGAGGCAGATCCAAATATGGTGCGGAAAAACCCAAATCGATATG
AGCCTCTGGAACTTGTTTTTCTCGGTCAGTCGAGGGAACAACGTTACGCCCCAAAATAGAACTAT
ACGGGGCCCTTCCGAATGAGAAAGAAAAAAAAGCGCTTAGTTTCGTTGGAAAAATCAACGCAAAT
ATCATATTGACTTTTTCTCGCCCTACTTCTAAGGATAGATAGAAAAGGTTGGAGAGAGTGACTTT
CAGAAATTCTCTCCTTTCTAAAGCTGCGCAAGGCGGCCCCCCAGAAGGGTCAAAAAAGGCGGGAA
GCAGAACTGTCAAAGAATGAACCAAACCAAATGATGGATGAAATG
Right flanking sequence: Indices 217210 -- 217709
GAGGAAGGAGAATGCTGACAGTCTATATAAGAATCTTAAGGAATTTTTTAGTCGTGATAGAAACT
TTTATTTCTTGATAGTTGTTGTTGGTATCATATTGACATTTTATGGGTGGATGGGATGGTCAAAC
CAAATGAGGGCAAAGAACGCCTACGATTTAATCACTAAGGACCGAGGCCTTGCTCCCAAGGTTGA
GAGCGGTTGGTGGGGCTTTCGCGTGGAAGCTAACCCTGTTCTTGCTCATGTTCCCCTTCATGTTC
CTGCTTCTAAGGCGGATGTCGAAGCTAAGGGGGACATCCCACCCGCGCCCACTCCCGAGCCTACT
GCTCATGGGAGTGTGCCTACTCCACCTGATGGTGGCCTTATTCCTACAGCTTCTTGTGATGCAGC
AGAACCATGGCAATTAGGATCTCAAGACGCAGCAACACCTATGATGCAAGGAATCATAGACTTAC
ATCACGATATCTTTTTCTTCCTCATTCTGATTTTGGTTTTCGTAT
Found at i:263510 original size:16 final size:16
Alignment explanation
Indices: 263486--263516 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
263476 CAAGCCTGCG
*
263486 AGTCCAGTATTTGACT
1 AGTCAAGTATTTGACT
263502 AGTCAAGTATTTGAC
1 AGTCAAGTATTTGAC
263517 ATAGGTTGGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.29, C:0.16, G:0.19, T:0.35
Consensus pattern (16 bp):
AGTCAAGTATTTGACT
Left flanking sequence: Indices 262986 -- 263485
GTAAGAAGAAGCGGGCTAAAGCCAGAAAAGGGGAGTTAGTTTATGGGCCAGTTTGTGATCCAATT
TCCCTTCTAACAAGATCGAGTTTACCATGTCCTTAAAGAATAAATTCAGTCCAGCTTACCCGATC
TGACGGAACGGAATGAAACGGAAGTTCGGAACGTAACTATCAATAAGTGGGCCCAGAAAGATACG
GCTTTTAAAGCAGCATAGCTTACTTGCTTCTTTCTTCTCTTTCAGTTAGGGAGTGCTTATAAGTA
ACCTAATAGGAGGTGCAAGACGAGTGAGTTCAGGGCCGTTGAAGTTTTTGCCCGAACGAACGGAA
CGCTCTCAACAGCAAGAGCAAAAGGGGGATAACAAGCATAACAGGAGGATAAAACAAGTAGGCCT
TGAAGTAGTAGGTTACAGGAGAGCATTCAATCTATCTCTCTTTCTTTCTTTAGTCTTTCTAGTAC
CTTTCCTTGTTTTTAGGTCAGTTAATAGAGCCAGTCAAGCCTGCG
Right flanking sequence: Indices 263517 -- 264016
ATAGGTTGGAGCACATCTTGGTTTGTACTTCTTTTGTAGCTTTGGGCACCTCGGGTGTGGTGACC
GAGCGCTTTTATCCCAATGGCTACGTTTAAATCCCCGCCGCTCGGTTCGTCTAAAGGCTGGAGTG
AGGGGAACATCTTCAGTGAAGCTTCCAAGTGGTAGTTATTCGAAGAAATGCGAACAAGACTCAAA
AATATCCATCTCCATCTTCAGCTGCCTCTCAAACGTTGCTTGAAAGCTATCTCGAATCCCGTGGC
ATCGACAACAAGGCAGAGCACAGGGAAATTTTCTTCACTGGGACCTACGGAACATAAGCATTAGT
CTGATAATTAACCCGTTCTCTATGAACCTGACTCCTATGATCTTAGAGCCTTCGCTTCCCCTCCC
ATCGCCCATGCAGAGACGAAAGGGAATCGGTCAGGCCTAGCGCTTAAGGCTTGACGCTCCTCTCC
TGTTGATTTGTTTTGTCACCTCGCTTCGTTTGACTTTCAACTATG
Found at i:272780 original size:15 final size:16
Alignment explanation
Indices: 272760--272792 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
272750 CTAGAGTTCC
272760 GAGCTCTC-CGGCTAT
1 GAGCTCTCGCGGCTAT
*
272775 GAGCTCTCGCTGCTAT
1 GAGCTCTCGCGGCTAT
272791 GA
1 GA
272793 TTTAGTAGCT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 8 0.50
16 8 0.50
ACGTcount: A:0.15, C:0.30, G:0.27, T:0.27
Consensus pattern (16 bp):
GAGCTCTCGCGGCTAT
Left flanking sequence: Indices 272260 -- 272759
TCCATATATGCTTTGGAAGACTCCAGTTTAGAAGAGTAAGTGAAGGGAGTAAGCCCTATGAGCTA
TAGCCAGTAACTCGTCGTTGGAAGCAGTTGAAGTTCGAAGTTTTAGGGCCTCTGGTTATATCCAT
TAACGAGTCGGTAGCTTCGGCAAGAGCGAAGGCTAGTAAGGAGGTAGCTGCCCCTATCTGAAGGG
CTAAGCAAGTAAGAAGTTTGTAGCTAAAGCGCATTCCGGTCATTAAGGAGCCAGTCTGTTCAATC
AGTTGTGCTGAAGTGCTTTCTCAAGTAAGTAATCCAACTTCTTCTTCCTTGTCTCTCTTCTTTTC
AATCCCTCTTTAAAGAGGATCCAGTAAGTGGTTTCCGTTGAAAGGCTCATGGGAAGACTTCACGG
CTAAGTTGCTTCCGTTCTCCTCTCCTGTGCTTGCAGCTGTTGACGGTCTTTATCAAGTACCGAAA
GTACGCTATGATCCAAGGTATCTATGAGTTGGTAGCTAGAGTTCC
Right flanking sequence: Indices 272793 -- 273292
TTTAGTAGCTAGCAGCTAAGCCCCATCATTGAGTTGAGGACCCCTCGGACCGCCCCCTGGTGTCC
GTAACCCTCTGGATTTCGTTTCTATGGCTTCTCTTATTGCAACAATTGTTAGTTTAGCCCCTTTC
CTGAAGGCTTCCTGTCTCCTTGTATGCCTAAATTCGGTCTCTATGCTCCTCTAGTCGTTAGAGCT
ATGCCCTGGAAGCTAGTAGCTCAGGCATCTGGTAGTTGTTATCTGCTAAACGCCAAGGTTTAGGG
GCTCGGGCAAGTAGTCCCTAGTTCCGGCTGAGTCTGTTGAAGTTCAAAGGTTTATGGCAAGCAAC
GAGTAACGCGTTGAGAGCAAGTAAGGAGTTGTTGGCTGCGGCTTTGGCGAAGTCCGGTCAATCCG
TTGAATTGGTATCTGCTGAAGGTCTAGCTCCAGTCTACTAATGGAATCCCTCCTTCCTTTACCTT
CTTTTCTCTTCCCTAATCGTCCCTAAGGAAGCCAAGTGTCTTCTA
Found at i:334134 original size:16 final size:16
Alignment explanation
Indices: 334113--334144 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
334103 AGCTAAGAAT
334113 GCAACTACAGGGCAAC
1 GCAACTACAGGGCAAC
*
334129 GCAACTATAGGGCAAC
1 GCAACTACAGGGCAAC
334145 TAGAGAATGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.38, C:0.28, G:0.25, T:0.09
Consensus pattern (16 bp):
GCAACTACAGGGCAAC
Left flanking sequence: Indices 333613 -- 334112
CACCTAGATCGGATTATAGAGCAGTGACTACTCCCGACTGAAAGCGGGGGAACAGTAGTGGATTT
TGTCTCCCTTCCGTGTACCTTTGCTAGCGTAGCCTGTACTGTACTCGAGGGAGGTCATAGAAACT
CTGGGTAAGCTTGGGCTATTCAGTCTACTCTACGAATCTACTCGTAGCGGTAAGCTCAGGTCTTT
GATGCTCGTTAGTCAGCTAAGCCCACCGCAGGTGCTTTGATAGAGAATCACTTTCGGGTTGTAGG
GCGCAAGGGGATCTTGAATCAATTCCCTCTTTGCCAGTAGCTAGTTTAGATATGGCAAGCGGTTC
GAGTCAAGTGCCAGTTAAAGAACCAATTGTTGGCAAGAGTCACAAATAGGAAGTTTGGTCTCTTC
TGGAAAGTGACTTTGACCAGTACCCTTCCGTATCGGAGAAGGAAAGGCTCTCGCAGTAGTTGTTC
TGTAAGGGCTTTCATTAGCGTGAGAAGGCGGTGAGAGCTAAGAAT
Right flanking sequence: Indices 334145 -- 334644
TAGAGAATGAGAGGGGCTCACATGACAGAGTGCCGAGCATTGTTCGTCGTGCTAGTTCCGCTACT
CCAGTTCCAGTGGGAAACTCTTTCTCTTGCTTTCGGGCCTACGTCTCTCTTTCAAGGGTTCCACT
TTCTTTGGTAGCTTTGGGCAAGGCAGTACTGGTACTCAGTCGATCTTGCTCTAGCCGCTTTCGGC
TTCAGGGAAGGTTGACTTTTCCCTCCCACCAGGCCACAATTCATTTGACCGAGTGGAGACAGCTG
TGGAAGCAGCAATCCCTTGCCTCCTGGAGGAGAATCGCTTGCCTAGCTTGACTATTTGGCTAGGT
TAGCTACTGTCCGGACGGGTGGGACTGTAGCGTCGGCTTCGCCGTTTGAGAAGACCGCCCGAAGA
ATTGCTCCTGAATGGCAACAAGCTGTTAAGGACGAGGTACAGAAGTTGCTGGATGTCGGTTTCAT
TAGGGGGAGTTTAGTATCCAGAGTGGGGTGGCCAACATCGTGGCG
Found at i:356666 original size:14 final size:15
Alignment explanation
Indices: 356640--356672 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
356630 CTCGGAGAAT
356640 AACTAGGAGAGAAAG
1 AACTAGGAGAGAAAG
*
356655 AACTAGGA-AGAAAT
1 AACTAGGAGAGAAAG
356669 AACT
1 AACT
356673 CTAGCAACAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 9 0.53
15 8 0.47
ACGTcount: A:0.55, C:0.09, G:0.24, T:0.12
Consensus pattern (15 bp):
AACTAGGAGAGAAAG
Left flanking sequence: Indices 356140 -- 356639
TTAGATAGCAAAAAAGGTCAATAAAAGCTTCTTATGTGGCATTTGTCCATCAATCCCATTCTATG
TCTATGCCATCTTATTTACTATGGATTCAACCTCTCGATGCTCTCCTTGTCCTTCCGGGATGTCG
AAAGCTTCAGTCAACACAGTCCTGAGCCCACATCTATCTAATAAGAGTCCTTACCCCGCATTCAT
CAATAAAAGTAGCAGGCGTGAAGGTTTAGTATACTCACTTCTAGTTACCGCACAACGTCCTATCT
TCATTACCTTGGAACTATGTATTGCAGTTGGCAGATCACAGAAGGAAGTCAATAGCATACTAGAG
TAGAGGGTAGGGGGGAAGGAACTGATTTAGCAATACAGCGAAACCACTAATTATCTATAATAGGT
GCCTATCTCTTTTCTTTTGTTACAGAATAAAAGAGTAAGGCATGAAAGATCAGAGAAAAAGGAAT
CCGTCTTAGAAGTTCATAGACGGTTAAATACAGTCCTCGGAGAAT
Right flanking sequence: Indices 356673 -- 357172
CTAGCAACAGGGAAAGAGAACTCCTAAGAGTAAGAGCAGCCCTTCGTGTAGGAAGGTGTAGGAGC
GAAGACACTCTTGCCCCTTCTTCCACTAGTCTTAGAGCAGAGGAATCCTGAGGAGAGGGCGGGAG
ACAATGAGGAGGAAGAGCAAAACCTAAATAGTGATATGAGGTATCTTGACATTGAGAAAGATTGG
TGGTATATATTCCTATATGAGTTTGAGAATCTACAAATGTTTGCATTATGTAAGGACTTCTACAA
GCTTTCTTTGGAGGAGAAATTGCTGACAGAGAAAGGGTCTGAGTCAGCTGCAGTTCCGCCTGACA
CTGTTCCGCCTGACACTGTTCCGCCTGACACTGTGGTAACTAATAACTTTGTAAAAACAGCTGTG
TTGTTGCTTTATTTTGTTTTAGGCAGGCCCGATGACGGGGGGGATAATTCTTCTTTTATTGAGAG
TTTAAGGGAGACTCCCAGTGAACTACCGCCGGAGTTATTGGAATG
Found at i:357005 original size:15 final size:15
Alignment explanation
Indices: 356985--357031 Score: 94
Period size: 15 Copynumber: 3.1 Consensus size: 15
356975 GTCAGCTGCA
356985 GTTCCGCCTGACACT
1 GTTCCGCCTGACACT
357000 GTTCCGCCTGACACT
1 GTTCCGCCTGACACT
357015 GTTCCGCCTGACACT
1 GTTCCGCCTGACACT
357030 GT
1 GT
357032 GGTAACTAAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 32 1.00
ACGTcount: A:0.13, C:0.38, G:0.21, T:0.28
Consensus pattern (15 bp):
GTTCCGCCTGACACT
Left flanking sequence: Indices 356485 -- 356984
ACTGATTTAGCAATACAGCGAAACCACTAATTATCTATAATAGGTGCCTATCTCTTTTCTTTTGT
TACAGAATAAAAGAGTAAGGCATGAAAGATCAGAGAAAAAGGAATCCGTCTTAGAAGTTCATAGA
CGGTTAAATACAGTCCTCGGAGAATAACTAGGAGAGAAAGAACTAGGAAGAAATAACTCTAGCAA
CAGGGAAAGAGAACTCCTAAGAGTAAGAGCAGCCCTTCGTGTAGGAAGGTGTAGGAGCGAAGACA
CTCTTGCCCCTTCTTCCACTAGTCTTAGAGCAGAGGAATCCTGAGGAGAGGGCGGGAGACAATGA
GGAGGAAGAGCAAAACCTAAATAGTGATATGAGGTATCTTGACATTGAGAAAGATTGGTGGTATA
TATTCCTATATGAGTTTGAGAATCTACAAATGTTTGCATTATGTAAGGACTTCTACAAGCTTTCT
TTGGAGGAGAAATTGCTGACAGAGAAAGGGTCTGAGTCAGCTGCA
Right flanking sequence: Indices 357032 -- 357531
GGTAACTAATAACTTTGTAAAAACAGCTGTGTTGTTGCTTTATTTTGTTTTAGGCAGGCCCGATG
ACGGGGGGGATAATTCTTCTTTTATTGAGAGTTTAAGGGAGACTCCCAGTGAACTACCGCCGGAG
TTATTGGAATGGTTAAATCATAATAGAAAAAAAACTGCTATAAGCATCGATATCGATTACAAATT
CTTTCAAATAGATTTTCCCATCCAACAACCCTCCACCAGGCATCGGTTTACTCTACAAGACATTT
CCATACTCCGATTAATTAGTAGGGGGCTAGGTTTAACCAAGTATATCGATTCCTGGAATAACAGG
GGGCTAGGGGATAGGATGTCTATCCATAGCTTAAAGGAGGTTGTTCTATGGGATGTCACTCCAAT
TCTAGTCCAAGTCGTAAGTTTATACAACGGTAAGTATGGACGCTTCTTAGTGCTAGTTATATTGG
GGGTAGGATGTACAGTGTGGTTCTCATTCTCGCCCCCCTATACGG
Found at i:366858 original size:14 final size:14
Alignment explanation
Indices: 366839--366873 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
366829 CTTCCCAAGT
*
366839 TCAACTCAATGATG
1 TCAACTCAACGATG
366853 TCAACTCAACGATG
1 TCAACTCAACGATG
366867 TCAACTC
1 TCAACTC
366874 CATATTGAGA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.34, C:0.29, G:0.11, T:0.26
Consensus pattern (14 bp):
TCAACTCAACGATG
Left flanking sequence: Indices 366339 -- 366838
CTTTGTATCCTACGAAACGAGCCAATAGATGACTTGCAGAGATATGGAGCGGATGGCGTACTGAT
AGATCTCCAGAAAGACCCGGTGAAGTATATGATCTTTACGAGGCCGAAATAGCATCACAGAAAGA
GCAGCCGGAATCTAGGTAGCGCCATCTAACTCGTTGTTCCCATCGATTTGGGTTTTTCCGAATGA
TAGAGGCAAGAACAAAGTTAACAACAGAACAGACTTAGAAGGATGAGGATCATGGGTTCGAAAGG
CAGCCAACCAATACTTACTAAGTAGAAGTCACAGGGCTCATACTAAGATGAGGAACTAATGACGG
GAACGGTAGGGTAGGGGTAAGATGAGGAACGAAAGCCAGGGTATTCTCAGACTGACTTTAGAGGA
AAGAAGGATTCTTTTTAGTACTGAGCCTTAGCTCAAAAGGACCTAAATGAAGAAGGGTCCGCAAG
AAATCGGGAACTCGACTCCGTTAAAGTTAGGTCTCCTTCCCAAGT
Right flanking sequence: Indices 366874 -- 367373
CATATTGAGATTCTGTGCCATCTCGCTTCTACGCCTACACCATTTCCAAGAAGTCAGTCAATCTT
GGCCAGTAGCTTCGGGGTCTCATAGCAAAGAACGGGATAGCAATAGTCGCAAGCGCGAGGAACGA
AAGAAGACATTCCTTACTCAGATCAGGAATGGACTGAGACAGAACGAAGGAGACTACGGTTCAGG
ACTGCCTTACAGAGGCATAACTCATAGCCAGCTCATAGCTCGCAAATCAGTACAGTAGAACGACA
AGCTTCCTTGCCTTCGGTTAGTTAACGTTGGTTCAGCGACGCCGTCAGTCTTCTATTTGATGTTG
GGACTCGGCTGGTGCGTACCAAGCCCCTGTTCGACCGAGGTTGGATTAGTCCCTCAGCCAAAACC
AAGTACTTAGAGCCATCACAGCCACCCAGAAGATAAGGTAGAAAACCCTCTAGAAAGGGGGTGCG
AGGATAGGCGTCCTAGGCCCCTGAGGCATCTTAGCAACCATGTAG
Found at i:371750 original size:39 final size:39
Alignment explanation
Indices: 371695--371773 Score: 149
Period size: 39 Copynumber: 2.0 Consensus size: 39
371685 CCCATCCTTC
*
371695 AATATCATGATTGGGTCGACCAGGCCAGATCATGAGTGA
1 AATATCATGATCGGGTCGACCAGGCCAGATCATGAGTGA
371734 AATATCATGATCGGGTCGACCAGGCCAGATCATGAGTGA
1 AATATCATGATCGGGTCGACCAGGCCAGATCATGAGTGA
371773 A
1 A
371774 TAGAAAATCG
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.32, C:0.19, G:0.28, T:0.22
Consensus pattern (39 bp):
AATATCATGATCGGGTCGACCAGGCCAGATCATGAGTGA
Left flanking sequence: Indices 371195 -- 371694
CCCATTGAAGGAAACTTTATGGATCAAGGCAGAAGCGAGGCGGGCCCGTCAACCCTGCCGGATCT
CAACGGCACCCCGCTGCCGGATCTGAACGAGCTTCCATCTCCTGCTCAGGAGATGGAGCCGAAGC
CAGCCTCTTCTTCAGAGCTGCGGGAAGCCGAGCAGGAAGAGCTGCGGAAGAAGCGCGTCTGGGAC
CCTTCGGACCCCTATTCTATCGAGGCGAGCAAGGCAGAACGCCTCAGGATGTTTGGGGCTGAGGA
AGTCCAACGGCAGGACGCCGAGGCTTTCCGACGAATCCAGAAAAGGACCTTAGGGGAACTCTTGC
AGCTGAACGAAAAAACCGAGAAGGAAATGAAAGCCTTCTACGAGGATTTTTCTCGAAAAAGGCGC
GAGAGGGGGGGGGCCACCATAATAAAAGATTTTGAGGGACCGCCGCCGGACGGGCAGACCTCACA
TCTAAGGATCCAGAGTTTTTTTTTCGAGAAAAGGTCCCATCCTTC
Right flanking sequence: Indices 371774 -- 372273
TAGAAAATCGAAAATGTACATAGCTGTTCCAGCGGAAATACTTGGAATAATTCTACCACTTCTAC
TAGGAGTAGCCTTTTTAGTGCTAGCTGAACGTAAAGTAATGGCTTTTGTGCAACGTCGAAAGGGT
CCTGATGTAGTGGGATCGTTTGGATTGTTACAACCTATAGCAGATGGTTTGAAATTGATTCTAAA
AGAACCTATTTCACCAAGTAGTGCTAATTTCTCCCTTTTTAGAATGGCTCCAGTGGCTACATTTA
TGTTAAGTCTGGTCGCTCGGGCCGTTGTACCTTTTGATTATGGTATGGTATTGTCAGATCCGAAC
ATAGGGCTACTTTATTTGTTTGCCATATCTTCGCTAGGTGTTTATGGAATTATTATAGCAGGTCG
GTCTAGTAATTAGGGGGCGGCCGTTCGGTCGCCTATGATACTAGGACCAATAGGTCAAAAATGGG
TTTGTGCCGCAGGTGTTGAACGATCTACTCTACACAGGTGTGGGC
Found at i:385023 original size:19 final size:19
Alignment explanation
Indices: 384999--385045 Score: 62
Period size: 18 Copynumber: 2.5 Consensus size: 19
384989 CCCTCTCTTG
*
384999 CTAGTAGCTTTCTTCTTTC-
1 CTAGTAGCTTT-TTCTTCCT
385018 CTAGTAGC-TTTTCTTCCT
1 CTAGTAGCTTTTTCTTCCT
385036 CTAGTAGCTT
1 CTAGTAGCTT
385046 GGTTGTTAGG
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
17 6 0.24
18 10 0.40
19 9 0.36
ACGTcount: A:0.13, C:0.26, G:0.13, T:0.49
Consensus pattern (19 bp):
CTAGTAGCTTTTTCTTCCT
Left flanking sequence: Indices 384499 -- 384998
TCAGAGCCGATTCACTAAGTAAATTACCCAGTTAAAGAACCGCCCCATCAGTTGAAACTCTTTAT
CCAGTCGATGAAGATCCCGAAACGGAGTCCCTAGTTCACAAGCCTGTTCCATAGCTAGCCCGGGT
TGAACCATACTCCGTGGAAGCACACGTTTTGGGACAGACAAATCGATCAGGTCGAATAATCCGTT
CCAGTTCCTGCTACCCCTCTTGCCGCTCGGCATGAAGTTGAATGTCCGAGAAGATCGGACAGAGC
TTAGTCCTCATCCCTTCGTTCCTTCTTCCTAGGAGCTAAAGGTCTTATTCCCTTAAGCAGTCTGT
AGGCCCTAGGTACTGTCCCTCTTACAACCCGGACGCTTCTCCTAGTGATGTTAATATCATTCTCT
CGTCCTCTAGTTCTTATTAGACTCCAAGATCTCAATTCCATTTTAGGAGAATAAGTTTGCTCCTG
TAGGTTTATATACCTCGTTAATGCCTTCTATCTATCCCTCTCTTG
Right flanking sequence: Indices 385046 -- 385545
GGTTGTTAGGTAGCAGCTTCCTATCCTAGTAATAGTCGTTTTCTTCTTTCTTATTAGCTAGTTGG
TAGTTCCTATCCCAGTAGCTAGCCTTTCCTATCCTATCTATCTGAGTAGCAGACTATTGAGTGTC
CTAATTATTAGTATTCCACTGATAGTCCGCTCTTCCTGCATACAAGATTTAGGGCATCTCAACAA
TACCATGCTTGTAGGGCCGCCACGTGAAGCTCATCGGATGACAAATAAAGAGCCTGGCCATCTTC
GCATCGAACTTCCCGGCTTCAATGTTCTCAATTGCAAGCATCTCCGGGACATAATCTTTCAGCTT
CCCCAGGTCCGGAAGCGGCAATCTCATATACAGCTTAGGAAAATACTGGTCCAGCCATGCATAGA
AGTAGTGGACCGGGAATTCCGCATTGCACTGGCCTGGACCCAGTTTCTCTTGGGCAACAGCGCCC
AAACCGTAATAAATGCTGGCAAGGACGGCCGGAGCTATGGCTACT
Found at i:428047 original size:9 final size:9
Alignment explanation
Indices: 428033--428057 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
428023 GAAGGGAAGG
428033 TACCGAACA
1 TACCGAACA
428042 TACCGAACA
1 TACCGAACA
428051 TACCGAA
1 TACCGAA
428058 GGTAGAGAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.44, C:0.32, G:0.12, T:0.12
Consensus pattern (9 bp):
TACCGAACA
Left flanking sequence: Indices 427533 -- 428032
TCCAAAAGATGGGGGTGGATTAGGGACTTGCCTTTCTTCGTTCCTACACCGCAAAGAGAAGCAAG
GAATGGTTAGGACAGAGCATAGCCATGCGTTGACTAGCAAGTTCAAACAAGAAGCTTACAGGCCT
TATGTAACTAACTGGGGGAGACGTCAGGAACTCAAGAGTCAGTAAGGTACCGAACGTACCGAAGG
AAGGAATATATCGCAATCTCTCAACCGGCACTGTACCGACTGTCCTTAGTTATGCGCTCACCGGG
AACGAAAGACAGACTTTCGAAATCGTAAACCTAAGAAGATAAAGCAACCAAGAGTAACGGACCGA
AGAGTGCCACTACACTACGATAAGATTCCGGAAATCAAGTCCGACTCTGAACTCAAGTTAGATTC
CTACAATTCACTTGATTCACTGACGCAACTTTAGCTACTAAAGCAAGTCAGTCGAAAGCGGCCTT
AGGGATCCACCACGGGCCGCCATCTTAGATAACCGGAAGGGAAGG
Right flanking sequence: Indices 428058 -- 428557
GGTAGAGAAGGAAGAGAACAACGAACTAGTCAGAAATATCGTACCGACCCAGGACAGGGTAAGAG
TAGAGGTTAGAACTCCGAACTCACCTCCTTGCTTGTTGCTAATCCGCCTTCGACCTCCTAATGTT
AGCAACAGCAGGAACACCTTGAATAACAGTCAGATAATGACCCGCCAAGAAAGGGCTCACGTACG
TCAAAGGAATATCCAAGCAAGTTATCTAGAAATCTCAATCTCGTAGTGCCCTTACCTTCCCCGTA
AGTCCCTCCTTGCCTAAGAGTTCTTGCTTCAAGTTAACTTGCGGTTGGAAGTCTTACTGCTACTG
TCCGTCCTAGCTATTGGCTTCCTAGTTGTAGGCTTACTTTCGCTCCTCTACCCGGCAATGCAAAA
CTTGGATTCATTTTGAATTCTTGCTAACTCGCTTCCTCTCCAATGGAAAGTACGTCCGAGGCCCT
CGCCCCTCCGGGGTTGAGCCATACCTCAACAGATCGGTGGAAGGA
Found at i:454771 original size:28 final size:28
Alignment explanation
Indices: 454739--454792 Score: 74
Period size: 28 Copynumber: 1.9 Consensus size: 28
454729 TGGTTAGCTC
*
454739 GAGTGAGC-AGGGTGGGTAGCTCGAGTTG
1 GAGTGAGCTA-GGTGAGTAGCTCGAGTTG
*
454767 GAGTGAGCTAGGTGAGTTGCTCGAGT
1 GAGTGAGCTAGGTGAGTAGCTCGAGT
454793 GAGATACGTG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
28 22 0.96
29 1 0.04
ACGTcount: A:0.19, C:0.11, G:0.46, T:0.24
Consensus pattern (28 bp):
GAGTGAGCTAGGTGAGTAGCTCGAGTTG
Left flanking sequence: Indices 454239 -- 454738
CTGAGCCAGGAGATCCTCTTTTGCTTTTGGATCGTTACAACGCTCGTTGAACGGTTCAAGTAGAA
GTGAATAGGTAAGAAGTAGAAACCCTCCATAGCAATCCATCTCCATAGGAGACAATATGAGCAAA
AGACAGGAATCCGTAAATCCCGCAGAAAAAAACTCAATCCGGGGGGAGTGAGGGGGGCAAGGGGA
ACGGGTGAGCGGCCCCTTGCACGCTGATGGACAAACCTTCGAAGCTCGAAGTGAAATGAGAACAT
CAGGAACTTCTCGTTTTCTATGGTCAACATACGATCAAACTCGTTCCAGTCGAACTAAGATGAAA
ATAGATACTCGACTCAAGTAAAGCTAAAGTCAAGTTCTCAAAGACAAACCACAAGAAACAGTCTT
CCGTCGGTGTATGTCGAATATCTTTCCTGCCTTCCTTTTCTTGGGTGAGTAAGTGGAGTCTGTTT
TACTCGAGTTGAGTGAGCTAGGTGCTGGAGTTAGCTGGTTAGCTC
Right flanking sequence: Indices 454793 -- 455292
GAGATACGTGGTTTATCGAGGTGAGGGCTGTGGTGAACGTCGAGAGGTACTGGAGTAACAAGCCC
CGTGGCTACCAAACCTGGGAGAAGCTGGGACGGTGGTACTGGAAGTGGATCCAATTTTCTGCCAT
CGACTTTTGTTTGAGAGTGATTCCCTTGATCTGTTTCTGGAATTGAGTTCAAATGCGTTGCCATG
TCCATTCGGACTTTTGGCACTATCAAGGAAGCTAGTATGCGCGTCATTAATTTCACTTTCCCTGT
CAACTTGTCCGGATCTTCAGCTATTCGTTTTGTAGCGGGCACTTCTGCTCGCCGCTGTTCTGCCT
TTTCTGACGACTTGCTGCTTACAGTGGAAATCATGGCGACTTCTGGTAGTTCTTCCATTGGGGCT
TTTCCCCGAATTGCCCTGAGCTCTTTAGCATCCTGCTGTTCAGCCCATTCCTTCAAAGAGACAGA
TTTCTGCGGAGATTCTGCACGACGCTTTCTCTTACTCAATGGTCC
Found at i:537865 original size:17 final size:17
Alignment explanation
Indices: 537826--537870 Score: 56
Period size: 17 Copynumber: 2.7 Consensus size: 17
537816 CAGGAGGGTT
* *
537826 ACAACCTATTCGATTAA
1 ACAACCTATTCTATGAA
537843 ACAACCTATTCTATGAA
1 ACAACCTATTCTATGAA
*
537860 AGAACCT-TTCT
1 ACAACCTATTCT
537871 TAATTGAAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
16 4 0.16
17 21 0.84
ACGTcount: A:0.38, C:0.24, G:0.07, T:0.31
Consensus pattern (17 bp):
ACAACCTATTCTATGAA
Left flanking sequence: Indices 537326 -- 537825
AAGAGCTTCCCTGGACTTACAGCTCGTGAAGGGAGTCCGCTTTCTCCTTTATAACCCTTAATGCC
TTCTAACGCATTCTACTAATCTTCGACCACCCTACAGTTAACAACAAGGAGAAAGTCTCAGGGTT
TGATTCCTTAACCTCCCGTTGTGCCATCCTGCTCTCCAAACTACAAAGAGAAGACTGCTCCCATG
CTTTCATAGACATCAAGAACAGCTGATAATAGCAGCCTTAATCAACATATAGGTTGCCCTCTCCT
AGCTATCAGAATAGGAATCGCTATTCGTGCAATCGGGCTTTAAGAAAAAAAGATGGGTTTCCCGT
GGTAGCAATACGCAAGAAGTAAAGAAAGGATTCCGAAAGACCTGGGACCGGTACTCTATTTAGGA
AAGAATTCCCTATCTATTTATACCAGAAGGGCAAGGCAACTACCTTATGAAACTACCAGACAAAG
AAGGAATGCACGACTTCTTAGCGCTCAGCTTGGATCAGGAGGGTT
Right flanking sequence: Indices 537871 -- 538370
TAATTGAAAAAATAAGTCATTCGTTGGGATTGAATGCCGGGTAGCGAGAACTCACTTCAGGAGCT
AGCAGTCACCTTAAGGGATCGCCCTTAGTGTCATCCAAAAACGAGATCTAAGGGGAAGACTCTTG
GGCCAAACCTATCCTCACTTGGGCAAGGAATCCAGAGCGAAGGACAAGCGTTAAGATAATTATAT
ACTCTTTCTGTCTTCAAGTGCAAAATAAATAGCTTTCGTAACATCTACAATTGTTTCAGCGGGAG
CAGTGGTATTGGAAACGTCCTTAGGTCTTTGATTCATTCCTTGGCAGCTACCTTAACCCGAGGAT
CAAGCTTACCAGAATGCTCCAATTGAAGTAGTTGATCCAACACAGTAATGACCTTCAGTAGTGCT
TCTTCCCCGCTCTGGACAGTAATAATAGAAGGCAAGCTAGCATTAGCAAGGCAAGTTAACTTGAA
GCAATAACTCTTAAGGGCGGGAGTGAATGCACCATTGGAGGATGG
Found at i:551326 original size:6 final size:6
Alignment explanation
Indices: 551315--551339 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
551305 GAGGACCCCC
551315 GATACT GATACT GATACT GATACT G
1 GATACT GATACT GATACT GATACT G
551340 TTTTCAACAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (6 bp):
GATACT
Left flanking sequence: Indices 550815 -- 551314
TCGACCAGAAGAGTTCCATTACGATAAGTTTCCGCCTTCGGGCGGTTCCCTTATTAAAGGGGGTA
GTTAGATTCCTCCCTTGCTTCGAGCACCCGAGCACAAAAGAGAGAATGTGAAGAGCTAGCTAGCT
ACACTAACTGAGAAGTCAAAGCAAGACTTCCTTAGTGAACTAAGAGATGAGAAAGGCATAGTACT
GAATCGACTTTCCAGCCTTGAAAAAGAATGGCACCTGGGAACGAGAAAGATGACCAACCGGAGTT
CAGCCTACGTAGGAGACAGCAGGATTAGACGAACAATGGTTTACAATGAGGGGAAGCTCTCCATC
AAGAACTGTTTTCAGGGGCTAGTTAGATAAGTTTGGAAGGAAACTGCGCATGAAAGAGAAGACAT
TCTCGAAGTTGAAGTATGTACCGGCACAGTGCCGACTTGGAAAGGAGGAAGTTCTCTATAAATCG
AAAGGTCATACCGTCAAGTTGTCTTGCTTTCAGGGGAGGACCCCC
Right flanking sequence: Indices 551340 -- 551839
TTTTCAACAACAGGAAGAACAAGAAAGAGATTCAATCTCGAAGTTAAAGTGTCGACCGCTCTTCC
GAACCCCACTGTTAGCAACATCCGCCTTCAAGTAGAAGGCGGTTCCTTCCTCAATACAATAGGGG
CTAGTTACATGAGTGGAGTCAGGCACAAAGCGATCTTCTCCAAATCCGATGTCTCCTGATCTCGA
TATCGAATGATCCGCACATTCATTAGCTCCTCGGTAGATATGCTTTCAAGTTGCTCCAGTTCTTG
ACAGCAAGGCGAATTCTCTTCTGTAGGACAACCCTTTAAGAATTCTATTCTAAGAACAGGAAAAT
AAGCCTGCCCCTGCGGGTTACAGTCCTTGATTCAAAAGAACTGAACTCTAGTTTCGGCTTGAGCG
AGGAAAGAGGAAAAGCAAACTAACTTCTCGGTTGAGACATCAAAATGAGAAAGTTGCATAAACAC
CGTGTTTTTCGTTACAATCGCTTTTTTGCCCAGATTCAAAGTCGA
Found at i:587199 original size:12 final size:12
Alignment explanation
Indices: 587182--587206 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
587172 TCTGGAGGTA
587182 GTTCCTGTGCCT
1 GTTCCTGTGCCT
587194 GTTCCTGTGCCT
1 GTTCCTGTGCCT
587206 G
1 G
587207 AGGGAAGGAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.32, G:0.28, T:0.40
Consensus pattern (12 bp):
GTTCCTGTGCCT
Left flanking sequence: Indices 586682 -- 587181
GAGACCTGGAATGTCGCCCAAGGGCCTTGTTGACGCAGCGCCCGCTGCCGGTGAGCCAATCCCCT
TTCTCGCTTCGGGAGCGCTGCCCGTGTGCGAGTCGGTCAAATCCCTGTTCAATATAAAAATGAAA
GAGACTGACCTTCGCCTGGCAAATAGAGAATAGGGCCCATGACATACACCTTTATTTTCCACAAA
AATCTCTCCTTAAGCGTTGAGGGGACAACTGATTCGTTGTGAGGACCATTAACTGAGATTTTCAC
TTCTTGTCTTGCAAATGCTGGTAGATCCGTGTTCATTGTTCTTACCGGAGGGAATCAACAATAGT
AGCCCAGTCAACCTCCTGTCAAATCAAGACCTTAAAGAAAAAGAGTAATCTATATGGAACAGCGG
TAAACTCTCGAGAATTGGTCCGCTAAAGGAATTCCATCTTTTGCTTTGGGCTCAACTCAAAAGTC
TAGCTGGAGCAGGTTTGAGCAAGTGTTGAAAGCAGTCTGGAGGTA
Right flanking sequence: Indices 587207 -- 587706
AGGGAAGGAAAAGACAGTCAAGTCAAGATGAAGGGGGGAGCTCTAGTCAAGTCAAGTTCTAATCA
AAGTCGTAAGTCCTCACCGCGTGAAAATGGAGTGATCGGCAGAAGGAATGAAAGTAGTTGAATAG
GAGGAAGTGAGCAAGTGTTGAAAGCTTCAGTCTTCAGTGATCCATTGGAACCGAAGATAACAAGT
AGAGTCTGCCCAATAGGTCACCAGGCTTGAAGTAACTTCGTGACTGATGGAGGTGGCCATTCCAC
GTTTGCTTTGTTCGTGAAGGGAGATCCTAAGCTCTGTGATATGACGTCCCCACCTGGTTGGTCTC
ATAGTTGTGCGAAAGCGGGACATGTGGACCACCGTTTAAGGGGATAGCTTTTAGTTAGCCGTTGA
AGGAGAAGGGGAAGTCAAGAAAAGCTCAAGATCTCATTAGTCAGGACAGAATCCGCTTTCAAGCT
TCAGTTAGAAAGGCAATCAATCAATCGAATTCGTCAGTCTGACGA
Found at i:613804 original size:28 final size:28
Alignment explanation
Indices: 613761--613814 Score: 74
Period size: 28 Copynumber: 1.9 Consensus size: 28
613751 CACGTATCTC
*
613761 ACTCGAGCAACTCA-CCTAGCTCACTCCA
1 ACTCGAGCAACCCACCCT-GCTCACTCCA
*
613789 ACTCGAGCTACCCACCCTGCTCACTC
1 ACTCGAGCAACCCACCCTGCTCACTC
613815 GAGCTAACCA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
28 20 0.87
29 3 0.13
ACGTcount: A:0.24, C:0.46, G:0.11, T:0.19
Consensus pattern (28 bp):
ACTCGAGCAACCCACCCTGCTCACTCCA
Left flanking sequence: Indices 613261 -- 613760
GGACCATTGAGTAAGAGAAAGCGTCGTGCAGAATCTCCGCAGAAATCTGTCTCTTTGAAGGAATG
GGCTGAACAGCAGGATGCTAAAGAGCTCAGGGCAATTCGGGGAAAAGCCCCAATGGAAGAACTAC
CAGAAGTCGCCATGATTTCCACTGTAAGCAGCAAGTCGTCAGAAAAGGCAGAACAGCGGCGAGCA
GAAGTGCCCGCTACAAAACGAATAGCTGAAGATCCGGACAAGTTGACAGGGAAAGTGAAATTAAT
GACGCGCATACTAGCTTCCTTGATAGTGCCAAAAGTCCGAATGGACATGGCAACGCATTTGAACT
CAATTCCAGAAACAGATCAAGGGAATCACTCTCAAACAAAAGTCGATGGCAGAAAATTGGATCCA
CTTCCAGTACCACCGTCCCAGCTTCTCCCAGGTTTGGTAGCCACGGGGCTTGTTACTCCAGTACC
TCTCGACGTTCACCACAGCCCTCACCTCGATAAACCACGTATCTC
Right flanking sequence: Indices 613815 -- 614314
GAGCTAACCAGCTAACTCCAGCACCTAGCTCACTCAACTCGAGTAAAACAGACTCCACTTACTCA
CCCAAGAAAAGGAAGGCAGGAAAGATATTCGACATACACCGACGGAAGACTGTTTCTTGTGGTTT
GTCTTTGAGAACTTGACTTTAGCTTTACTTGAGTCGAGTATCTATTTTCATCTTAGTTCGACTGG
AACGAGTTTGATCGTATGTTGACCATAGAAAACGAGAAGTTCCTGATGTTCTCATTTCACTTCGA
GCTTCGAAGGTTTGTCCATCAGCGTGCAAGGGGCCGCTCACCCGTTCCCCTTGCCCCCCTCACTC
CCCCCGGATTGAGTTTTTTTCTGCGGGATTTACGGATTCCTGTCTTTTGCTCATATTGTCTCCTA
TGGAGATGGATTGCTATGGAGGGTTTCTACTTCTTACCTATTCACTTCTACTTGAACCGTTCAAC
GAGCGTTGTAACGATCCAAAAGCAAAAGAGGATCTCCTGGCTCAG
Found at i:642911 original size:71 final size:71
Alignment explanation
Indices: 642836--642988 Score: 247
Period size: 71 Copynumber: 2.2 Consensus size: 71
642826 TGTCATTTCA
642836 CAGCTATATGAGATGCAC-TTTTCTCATTTCTATCGTAGGCTTACGAAGGGAAAGTCAA-TGAGT
1 CAGCTATATGAGATGCACTTTTTCTC-TTTCTATCGTAGGCTTACGAAGGGAAAGTCAATTGA-T
642899 AGAAATTG
64 AGAAATTG
* * *
642907 CAGCTATATGAGATGCACTTTTTTTCTTTCTATTGTAGGCTTACGAAGGGAAAGTCAATTGATGG
1 CAGCTATATGAGATGCACTTTTTCTCTTTCTATCGTAGGCTTACGAAGGGAAAGTCAATTGATAG
642972 AAATTG
66 AAATTG
642978 CAGCTATATGA
1 CAGCTATATGA
642989 TTGGCACAGA
Statistics
Matches: 77, Mismatches: 3, Indels: 4
0.92 0.04 0.05
Matches are distributed among these distances:
71 68 0.88
72 9 0.12
ACGTcount: A:0.30, C:0.14, G:0.22, T:0.33
Consensus pattern (71 bp):
CAGCTATATGAGATGCACTTTTTCTCTTTCTATCGTAGGCTTACGAAGGGAAAGTCAATTGATAG
AAATTG
Left flanking sequence: Indices 642336 -- 642835
GGGCCGAGTTTAGTAAAGACTGGTTACAACGAAAGATCCCTCGCTGCACACTTTCCCAAAGACCC
ATACACGAGCGAGCGATTCGCCATAGTCCAATCGATTCTTCGGACGTCCGCTGAGAGACCGAGGC
TGGGCGTAGAGAGGGGGAGAACCGGAGCCAAGAGCGTGAACATATGCATGGGTAGGTCTATCCCC
AACTCCTGTGTTGACGTTCTCCTGTATTGGTGTGTTTGGCTTTTGCCGGGTGTAACATAATATTT
TATATAAAAAATGCCTTATCAGAGAGGGGCCCTTCTTTCGGCTTGCGGAAGTAGTTAAAACAAGT
TAGAACAGTTCATTGTGGCAATTACTAGGTGCTGCTCGAACAGGAAAGAAAGCAAGGGTGCTGCC
GAAGCGTGGATTTCTCATGGACAAAAAAATGCACTTTTGCAGCTATATAAAATGCACTTTTCTCA
TTTTTCAAGAGCCCTTATTAGTGAAAATCAATGAATGTCATTTCA
Right flanking sequence: Indices 642989 -- 643488
TTGGCACAGATCAAAGGGGAAAGCAACGAGGAATTCCAAAGTGGAAAGGAAAAGGGCAGTTCCAA
ACGAAGGACCCAGTCTCAAGGGGCAAGCTTCCCGGTGTCCAAGTGTCAAGTCCCGAGGGCTTGTG
TCCGCCGAAAGCTGCCTTTTTTCTTTTTAGTCTTTCCTTGCAATGAACCGAAAGGTGAGAGGCAG
GGCTCGGTCTCAAGGTTTAAAGTCACTAGTCAGTCCAACTGCACGAGTGAAAGGCGAAAGTCAAG
ATTACGTGCAACCAGGTGTAAGGTGTCAAAGGTCACCGAGTCGTCGTAAAGGGGAATAGGTTGTT
TTGCGCATCCAACAACTGAAAGAGTTTGCGGAGAAGGGTTGAGTTGCGTAATAGCAGATTCGTAG
GTCAATAAATCGTTGGATTTGAAATAGAACTCTCTACCTTGGGCGGATAGGAATTGAGACTTTCA
ATGGTCCGCTCTTCTCTCCTCGTGATCGAAGCTGACCCCAGAAGT
Found at i:669917 original size:20 final size:19
Alignment explanation
Indices: 669884--669921 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
669874 TGAGGAACAA
669884 AACCAAGTCGTGAACTGAG
1 AACCAAGTCGTGAACTGAG
*
669903 AACCGAAGTCTTGAACTGA
1 AACC-AAGTCGTGAACTGA
669922 TTCGAATCCT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.37, C:0.21, G:0.24, T:0.18
Consensus pattern (19 bp):
AACCAAGTCGTGAACTGAG
Left flanking sequence: Indices 669384 -- 669883
CCGGCAAAAACAGACAATATACCGATCGGGAAATAGGACGAGAATTTCATAAAGAAAAAAGTGAG
CCTTAGGAATCCTTGTCCCACTCGGAGGGATATACTAGTGCGATTATCCCCCACGTGCGAGGTTT
AGGTAAAGGCCTTACTCTATTCCTAAAGTCAGGAATAGCGGCCTTGAGGAAAGCAGCTTCGCTTC
CTTACTTTAGCTCTTCTTCCTTAAGGAGTTTAGCTTCAAGTTACAAAGAAGAAAAAGAAGGATTC
GGGAGATTGTCCTCTATTGGTATTGAAATAGTCTGATGAACTCATCATGCTAGCTCGTGGAATCA
AAAGGGTAAGAAGTCCTTAATGCACTTCCAGTAGACTAAGGAGTACCACTCGGGCCCCATACTCA
AATGGGTCCCTTCGCTCAACTAGTCAAGCTAAACCAAGACTATCTCCCTACCTAACAAGCGCAGG
ACTGGTCTGTCCCGCTGAGGCGGGCTTGCTAAAGATGAGGAACAA
Right flanking sequence: Indices 669922 -- 670421
TTCGAATCCTGGAATTCTCACTGGGTTTGACTTCTTACATGGGATTGAGTTTGATGGCTAACCTG
GAGGGTTGAACTCCAACAAGGTCGTGCTAGAAGTTCGTTGCTTGGCGTCTTGCCCACTTTCTCTT
AGTTCGCGTCTTGAACGCCTTTCGAGTCCACCAATTCGTAATAGAATAGGCGAGTCAAGTTACGG
GCAAGTGTGAGTCGGAATTCCATTCTTCTTCCTTGTTATTAAAGAATTTGTGTTTTGGTCAATGG
AAGAGTTGGTTGGAAGATACCTACTCGAGGAGGGAGGGGAAGGCATGCCGGCTGCTGCAACCTCT
TGGATTGAGACGAGGCGGTCGATAGGTAGGCCGGAGGGACGTTGAATAGATGCGGCACCCAAGGC
ATTCATTCCCCAAGCATCGGTTGCATCCATGGCTTCATCAATCGAATCAATCCAATCAGCAAAGA
GCAAGTTCCATATGAAATAGCTAGTAGAGCAAAAGTCGGTGTGTA
Found at i:704132 original size:18 final size:18
Alignment explanation
Indices: 704092--704134 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
704082 ACCGCCCTGC
704092 CATAGTCGCGAGTCTGTTT
1 CATAGTCGCGAG-CTGTTT
704111 -ATAGTCGCGA-CTGTTGT
1 CATAGTCGCGAGCTGTT-T
704128 CATAGTC
1 CATAGTC
704135 AACAAGGTGG
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
16 5 0.23
17 1 0.05
18 16 0.73
ACGTcount: A:0.19, C:0.21, G:0.26, T:0.35
Consensus pattern (18 bp):
CATAGTCGCGAGCTGTTT
Left flanking sequence: Indices 703592 -- 704091
AGTGATTCACCGAAGCGACGAGACCTTGAAAGCTGCTTTTTCAAGTGTCAGTAGCGGGACGTTCT
GTCAATCGGGGAAGGTTATTGGTGACAACACCTGGAGATATCAGAAGTGAGAATGCTGACATGAG
TAACGAGAAATCCTGTGAAAAACACGATCGCCTGCCAGTGGAAGGTTTTCTGCGTTCAGTCAATC
TACGCAGAGTGAATCGGTCCCTAAGGAACCCCCGAAAGGGCCGCCGTCCGATGGGTACACGAAAG
TGACGAAGTTGCTTTGACTACAGAACCATGCCTGTCTGTTGGAGCGAATTGGATGATCGGGCCGA
GGGCTGCCCCCTCTTCCCCTCACTCTCCTTTCCCTAATATGAACCTTGAGTCATCAAAGCCTTTC
TGACTCGGCCTGGCCCGGTCGCCCTACGCGACTGGCGCTTCAAAAGGCGAAACTCTCGTCGTAGT
TTGGCGACAGTAGGGGTCGCGAGAGAGCAGAGCGTACCGCCCTGC
Right flanking sequence: Indices 704135 -- 704634
AACAAGGTGGAAACTTCCAGGAAAAAACTTCGAATTGGGAGGGTGATCCTCCCGGTGAACTGACC
GTACCCCAAACCGACACAGGTGAACAAGTAGAGTATACTAGGGCGCTTGAGAGAACCATGTCGAA
GGAACTCGGCAAAATGACCCCGTAACTTCGGGAGAAGGGGTGCTCTCCTATCTTTTGATTAGGAA
AGCGGCACATACCAGGGGGTAGCGACTGTTTATTAAAAACACAGGACTCTGCTAAGTGGTAACAC
GATGTATAGAGTCTGACACCTGCCCGGTGCTGGAGGGTCGTAAGGAGAAGTGTTATAAGCTTTGA
ATGGAAGCCCCCGGTAAACGGCGGCAGTAACTCTAACTGTCCTAAGGTAGCGAAATTCCTTGTCG
CATAAGTAGCGACCTGCACGAATGGTGTAACGACTGCCCCGCTGTCTCCGACATGGACCCGGTGA
AATTGAATTCTCCGTGAAGATGCGGAGTACCAACGGCTAGACGGT
Found at i:726217 original size:22 final size:20
Alignment explanation
Indices: 726173--726218 Score: 56
Period size: 22 Copynumber: 2.2 Consensus size: 20
726163 CTTTGACATA
726173 GACCGATACAGAAAACAGAT
1 GACCGATACAGAAAACAGAT
* *
726193 GACCGTTAGCAGAAAGACCGAT
1 GACCGATA-CAGAAA-ACAGAT
726215 GACC
1 GACC
726219 TTATTTCCTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 7 0.32
21 6 0.27
22 9 0.41
ACGTcount: A:0.41, C:0.24, G:0.24, T:0.11
Consensus pattern (20 bp):
GACCGATACAGAAAACAGAT
Left flanking sequence: Indices 725673 -- 726172
GGGCTGGATCCAACTCCTAGCCTTTCTTTATTGCCATCCTCCTTTTAAAGCATCCCGTTCTTCGA
TTTCTGATTCATATGCATATCAAGACCGACCAAGCAAGGGTCAGCCCAACCGAAGGAAAGAAAAT
GACAAACGAAGAAAGATACATTCCAACTGCTCCTAAGGTAAGGGCACGTGTCTACTGAGAAAGCC
GCTCCCCATTGACGGAGCTCAGAAGGTTTCATTTCTTCCAAAAGGTAGGCCGAAGTCAAATGAAT
GAAGTAGGAAAGTGGTCTCAGAGTCATCTTGAGATAGGAGTATAATGCTTTATCCGTTTCATTCC
CTATTGAATAGGTGAGCGAAAGACCGTAATCCAACTAAAAGAAGGTGGGCACTTGCACCGAGTAA
GAAGGATAAGTCAATCCCACAATTTGCTCACTTGCTGGCGCTCAACCCCTTGTTTTGGTCAGCAA
AGGAGAGATTCGCTAACCGGAAAGACAGATCGACCCTTTGACATA
Right flanking sequence: Indices 726219 -- 726718
TTATTTCCTTCCACTCAAGAACTAAAGGAATGGAAAGACGACAGACCGATAGCCAATGCCGTTAC
CTGAAGAGGGCAGGAGATCCAGAAATGAATTTCTCTCCGTAACCTTGAAGAACGGATAGAGCAGA
AATAGATGCAGCCAAGGTCTTGATTCTCTGCCTTAATCTTTTCTGATAGTATGATAGGACTACTC
GGATAGGAATGCCAACATCCAAGAAGAGAGCTACCATGATGCTACTCGGCTCGGAGAGGACTACT
AGCTACGAGATTAAGCTAGTTTTGAGAAGATGAAAGATGCAGATGAGAAGACGTTCAAGACACAT
TTGGTCATTCGGTCACTCACTCCCACTTAACCAAGTCTAGCCAACTAGAATGAAGAAGTAAGGCC
TTCCCCTTACTCTTTTGAGACTGACCCTTAGCTGTTAGTGGCCTCTTCTATCTCATCCACCATTT
GAAGCCTCCCACTAATGGGGGGTTTTCTCTGCGGGGACCGGATCC
Done.