Specifications
==============

Sequence source file: "/mnt/biodata02/home/xyzhang/pmgdraw-test/test_set/outdir_mt2/NC_045228.1/NC_045228/Repetitive_sequence/123.misa.ini"

Definement of microsatellites (unit size / minimum number of repeats):
(1/10) (2/6) (3/5) (4/5) (5/5) (6/5) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              1
Total size of examined sequences (bp):           434980
Total number of identified SSRs:                 59
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	50
2	4
3	5

Frequency of identified SSR motifs
----------------------------------

Repeats	5	6	7	8	9	10	11	12	13	14	15	total
A	-	-	-	-	-	12	6	3	2	2	1	26
C	-	-	-	-	-	1						1
G	-	-	-	-	-	3						3
T	-	-	-	-	-	13	5	1		1		20
GA	-		1									1
TC	-	3										3
AAC	1											1
ACT	1											1
CAA	1											1
GAA	1											1
TAT			1									1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	5	6	7	8	9	10	11	12	13	14	15	total
A/T	-	-	-	-	-	25	11	4	2	3	1	46
C/G	-	-	-	-	-	4						4
AG/CT	-	3	1									4
AAC/GTT	2											2
AAG/CTT	1											1
AAT/ATT			1									1
ACT/AGT	1											1