Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_018551
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 258426
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.27
Found at i:18864 original size:28 final size:28
Alignment explanation
Indices: 18832--18906 Score: 141
Period size: 28 Copynumber: 2.7 Consensus size: 28
18822 AAAGAGCCTA
*
18832 GCTTTCTTGGTTTGATGAGCTTATACTC
1 GCTTTCTTGGTTTGATGAGCTTATACAC
18860 GCTTTCTTGGTTTGATGAGCTTATACAC
1 GCTTTCTTGGTTTGATGAGCTTATACAC
18888 GCTTTCTTGGTTTGATGAG
1 GCTTTCTTGGTTTGATGAG
18907 TGAGTAACAA
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
28 46 1.00
ACGTcount: A:0.15, C:0.16, G:0.24, T:0.45
Consensus pattern (28 bp):
GCTTTCTTGGTTTGATGAGCTTATACAC
Left flanking sequence: Indices 18332 -- 18831
AGTTATCAAAAGGCCTACCTTACAAAGGGAACGTCGTTTCCCGGGAACCTTGCTGCTTACTTGCT
ATATTCCCGCGTTCTTGCATGGCTCGCGCAACCCCGCCCTGCTTATCCCTTCCCCCTCCCCCCTT
ACCGTCCAAAACTCAGAGGCCGTATGGAGTATAGCCAAGTGGTAAGGCACCGGTTTTTGGTACCG
GCATGCAAAGGTTCGAATCCTTTTACTCCAGATTATGAACACCCGATCGGATCTGTCAAGAACGA
GCTGACGACTACAGGGGAAGCTCTCATTAATTAGTTGATGAGGGGAAGCGGCTGACAGCAGTCCC
TGAGCTAAGCCTTGGAAATCTTAATGCCATAATGCCTTTCAAATCCTCCTAGCCATTATCCTACT
GCAATAATTCTTGCTAAGAAGAACGCCCACCCCTCTCTGTTTGATAACAGTTTCCTCCTAGTTTG
CTTGAAACAGATAAGCTTGCCCAACTGCAACAAAGAAAGAGCCTA
Right flanking sequence: Indices 18907 -- 19406
TGAGTAACAACTTCTGAGTTGACTTGGAAGAAACCATTGTGGATTGTTGTAGTTCCGTGCTAATT
AACAGGTTCTTTGCCTTTATTTAAAACAGGTTTGGCGTTGCATTCATCTAGGCTGTAGCCTCTCA
TACGACAAGAAGGATTTAGATCGGGGGATTTTCGTAAATGATTCGTTGCCAGCGCCCAAACTTTC
CCATCCCCAGCCAAATACGATTGGGCATATCCTTCAAGAGATCAACCAATACGCATACTGCGCAA
CACTAGGGTGGTCGTAGATCAGCTAACTGGGGCGTCCATTGGTGGAACTCAGCCGGAACCTCAAT
ACTGTGTAGTGCCCGAAGAATTACTACGTAATTTTGTCTAGTTTAGTGATAGCAGTAGGTCGGTT
CGCTGTGGCTCTAATGCCGGCGATGAAGCAAACAAATAGGGTGTGATAACATTCAGACCTATCTG
AGACTAAGAGGGGCTGGTTACCGGAGGTATTCCTGTCAGCCTTGT
Found at i:21501 original size:36 final size:36
Alignment explanation
Indices: 21454--21568 Score: 212
Period size: 36 Copynumber: 3.2 Consensus size: 36
21444 TTCAAAAATC
* *
21454 CCACTAGCATAAGCATGCTGAGTACCGGACGCTTGA
1 CCACTAGCATAAGCATCCTGAGAACCGGACGCTTGA
21490 CCACTAGCATAAGCATCCTGAGAACCGGACGCTTGA
1 CCACTAGCATAAGCATCCTGAGAACCGGACGCTTGA
21526 CCACTAGCATAAGCATCCTGAGAACCGGACGCTTGA
1 CCACTAGCATAAGCATCCTGAGAACCGGACGCTTGA
21562 CCACTAG
1 CCACTAG
21569 AAAAGTTAGT
Statistics
Matches: 77, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 77 1.00
ACGTcount: A:0.30, C:0.30, G:0.23, T:0.17
Consensus pattern (36 bp):
CCACTAGCATAAGCATCCTGAGAACCGGACGCTTGA
Left flanking sequence: Indices 20954 -- 21453
GTTTCACATTTCCGGAAAGACCACCTATTTGTTCCTTTACCAGGTTCAGCACGAAATCATAAAGA
AGCTCTACCAAGGATTGCCAAGCATTTGGGACTAAGTTTCCTCCTCCCTTTTTAGTAATAAAATG
AATCAGAAGTAGGAAAAAACTCAGAGTTAGCAGCATGAACAAAGATGGATTTGTGAATGAGAAAT
AGAAGTTTCCGATATTCATAGGAATCAATGGGACAATCTCAAATTGGTCAAGTGGGGAGGCCGCC
GCCTGTCCCACTTGATCAAGAGCTTCTCGAAAGGATTCCCCGGATACTCCGTTTTGGGTCAAATC
ATCTAAAAGGTACTCCAAAAAAGGGATATTGTTGCTTTCTCCATGTGAAGCCTCTGCGAGATTCA
AGGCCCTTTGAGGATCGCACGTCAATACCTCAAAATTCTCGCGTATCATACATTGCAGCTCTACT
ACACGCTCATCGGTAGGATTCAGACCTGGATGATCTTCAAAAATC
Right flanking sequence: Indices 21569 -- 22068
AAAAGTTAGTGGATTGACTCGCAGTTCTAGAATATGGATCACTGGAACTTGATTTCAAACTATAA
TCGTTAATAGTCGTCGTGGATTGACTCGCAGTTCTAGAATATGTATCACTGGAACTTGAATTAAG
GCTAGTTTCATCAAATTGAAAGATTCGTCGCATTTTGGATTAATTGATTTCAACAAATCCCTCCA
GACAGCTTCATTAGGAAAGCCTCTAGGAGTAGTGAAGAACTATAGAAAGTTGTGGTTGGTTGTTG
ACCAACAAAAGCATGGGAGAAAACCAAGAACAGGGGGCATAGAGATTTCTTCTCTTATGAGATTG
AACTTTGTTTAGTTTAGTAAGAGTTGTAGGTTAGAGAGAAAGCTCACTCCACAAAGCGGCCTTCT
TCTTATATACGTATTATTCTGTCAATCGATAAGCTCTCCTCAATAGTCAGATATGATCAATTTGG
AAGGGGGGGATAAGTATTAGTTTCAAACGAATGGGATTCCGTCGA
Found at i:26365 original size:29 final size:29
Alignment explanation
Indices: 26323--26379 Score: 114
Period size: 29 Copynumber: 2.0 Consensus size: 29
26313 ACGTCTTGGC
26323 GAGAGGTGCTTTAGCAACTCGACTGAAAG
1 GAGAGGTGCTTTAGCAACTCGACTGAAAG
26352 GAGAGGTGCTTTAGCAACTCGACTGAAA
1 GAGAGGTGCTTTAGCAACTCGACTGAAA
26380 AGCAGAGGGC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.32, C:0.18, G:0.30, T:0.21
Consensus pattern (29 bp):
GAGAGGTGCTTTAGCAACTCGACTGAAAG
Left flanking sequence: Indices 25823 -- 26322
TTTGATGTAACTAAACTAGATAGAGTTTGGGTCACGAATTCGGATTTACCGATCCGAGGGAACCA
AATGAAGCATCTTTTTCTCCTTCCGAAAGAAAAGAGGAAGACTTATTCCCACCGAAGTGCACTAA
TAGAAAACCCCTACCAGTCGAAGTGGAATGATGAGCTAAAAGTCCCTTGTACGATGAAGCTGAGT
CACAGAAGCGGGAGAGGTGTCTTCTTTGAGGATCGTTTCCTATCGAGTGGATCAAATCCCAAGCC
TTAAGAGCCCATTAACCCATCTTCTGTTCCGCTAGCCAGCTAAGCTAAAGCTTGCCATCGACCGG
TTCGTTCGGAAGTAACCGCATGCGCTCACCTATCCATCAACCAAGACAGAAGGGAATGACCAACC
AAGCGAGCAGAGCCCAACTACCAATCCTATGTTCTCCCAATCCTGGAACTGGCGGCAATCTAACG
AATTCGGGAAAGCAAGATGATCGACACTGGAAAAGACGTCTTGGC
Right flanking sequence: Indices 26380 -- 26879
AGCAGAGGGCATAGAGTCACCGACTAAAGCAAGCCAGGAAAGGTAATTGCTTACAGACAGACCAG
ATTTTGGAATAGCAGCTTACTCTCAAACACCGTATTCCGCCAAAACCATTTACTACGCAAACAAG
ACCGGCAACTGGTTGAGCTGATAGGACCACAGCTGAGATTGACTCAAGAGCGTCTGTGGCTAAAA
GACTAGCAGCATATTCTTCTTCAATTGCGACAGGAGCTCATTCTTTCGCAGCTTATTCGTCGTTT
GGGCAAATGGATGTGGGATGGAGCTTGAACTAAGGGACCTGGGGCGTAGCCTTGATTCAAAGTGT
CTAGGTACCAAGAGTAAAGGAAGGAGGGCTAACTAATATAATAGGGGTAGGGGGGCGCTAACGAG
CAAGAAAGGGCCCCTTTATTAGTAAGGTTGCTTGCTTGTCACACAGGTCGTCTTTGGCTCGTCTC
CTTCCGCGATACGCACCTGGTAGTATCCCGCCGTAGATCCAACTT
Found at i:42754 original size:15 final size:15
Alignment explanation
Indices: 42734--42765 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
42724 GTCCACTACC
42734 GAAAGAGAAAGAAAA
1 GAAAGAGAAAGAAAA
*
42749 GAAAGAGCAAGAAAA
1 GAAAGAGAAAGAAAA
42764 GA
1 GA
42766 GAAATGCCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.69, C:0.03, G:0.28, T:0.00
Consensus pattern (15 bp):
GAAAGAGAAAGAAAA
Left flanking sequence: Indices 42234 -- 42733
CTATCAAGTTAGAGCCGGTGCTTAAGTTGCCTGAGTTTGGGTTGAAACTTATGGCAGAGACCTTG
CAGCTGAGGAAAGGGTTGGCTAACATAGCTCGCCCTATAGTAATATGTCGACCGCGCCACATTAG
GTATAACTGGTAAGCTAAAGGAAAAGGGAGCTGTTGTCAACCAACGGGAACTAGTTATCCTGTCT
ATTCATTCTCTTTCTTCTAGTTAGTCAACGGGCGTAGCAAGAAAGTAACCTAACCTATTTATCGG
GATGTAGTAACAAAGCCAAGCACTTGTTTTACCGTGGAAAATCTCTATTTACATAGAAGAGAGCG
CAGCAACTCCCCCATTAATTAGGAACCGGTGGAACTGGAGCACTTGTTTATTTACCATCTCCTTA
TACTTGAAGACTCTCGCCCGAATTCATTAGTATTAGTTGGTACTAGAAATGTGAGAAAAGTGAAC
GAAAGCGCTAGCGCGTAAGCAAATCCCTTTAGCCCGTCCACTACC
Right flanking sequence: Indices 42766 -- 43265
GAAATGCCAACCCGTGGGATGAGAAGTTGCAGAGTAGCTGATAGTGGCCTCCCTCTCCGAGTAAG
AAATACCTCTCCTAACATGACTTCGAGAATTGGGCGGAGCTGGAACATTTGATGCAATAGCTGAC
AATCCAATGGGAATTATCCAATCGAAGGAAGAATGATTCATGACTACTCTTGCTGCTTTGAAAGA
ACTCTCTGAGCTTGGTTTTCAGTCAACTTTATCTCTCTCTCTTTATGAGCGGTGGTCATGCTCTG
TACATTCTAGTATATGTTAATGATCTTAGAATCACATGGTCCAATCCTCTGAATATTGATGACAT
AGTATGCATCAAAAATGCCATCTTTTCTATAAAGTATCTGGCTCAATCTTGGTCAAAAAGTGAGT
AGAACTTCTGCTTCTATCTTTCTCAAAACATTACTGATCTATTGGTCAAGGCTGGCATGGAAAGA
ACCTCTCCCTTCTCCCATAGTCACTTCTGGGTCCTCTTTGTCTGC
Found at i:58665 original size:19 final size:19
Alignment explanation
Indices: 58641--58679 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
58631 GCCAAAGGAC
58641 AGATTTTACAAATGGTCTG
1 AGATTTTACAAATGGTCTG
58660 AGATTTTACAAATGGTCTG
1 AGATTTTACAAATGGTCTG
58679 A
1 A
58680 TTGACCTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.33, C:0.10, G:0.21, T:0.36
Consensus pattern (19 bp):
AGATTTTACAAATGGTCTG
Left flanking sequence: Indices 58141 -- 58640
GTTGGAGTTGGTACTTCAACCGGTTCTTTTACAGTCCCACCTTCATAAGGAAGAACTGCCTTGAA
GGGTAAGGCAGGTCAAAAGAGTGGGCATCTTTACTACCTATGGCTAACTCAAAAAAATCTGAGAG
GGGAAGTTGCTCTGCTCTGGATGCACCGGTCAGAACGGGGAAAGCTGCTCTTAGAGCTATCTCTT
TCCGATCTAGGCAGATGGTTGAATCTAATGCGAGTAGCACTAGGCCTAGAGCGGAATATTAGGTA
GTACGAGTTGCTATATTTTTCCATCCCCCTTCGGGAAGAAACTCTCTTTGACTTTTGAGAAGATA
GACCCAAGTAGCCCTTGAATGATCATCCACTATGGTTCAAAAATATCGAAAACCTTCTGTTCTGT
GGTTTCAACTGAAAAAGGGCCCCAAATGTCAATGTGAATCAGATCAAAAGGTTCATCACAAATGT
TATTATGAGATTGAAAAGGTAAGTGTTTTTGTTTAGCCAAAGGAC
Right flanking sequence: Indices 58680 -- 59179
TTGACCTTTTTATTCTTATGAGTAGGGAATCAATCTGAAAGGATAGCAGTTTTAAGAAGAAGGAT
GGAGCAGAAAGATAGAAAGATCAGTTGCTGGAAATCAAATATGTAAATAGTCGAGTTATTGCATT
CCTCTCACAAACTATCAATTTCATAAGAGAAGAAAGATCGTTTTTCGAAACTATCAATTTCATAA
GAGAAGAAAGATCGTTTTTCGAAACTATCAATTTCATAAGAGAAGAAAGATCGTTTTTCGAAAAG
AAAGAAGGTTTTGATTCGAGGCGGATCCCTTTTTTCTTTGCCTTTACGAGTAAGAAAGTGGTTAC
GCTCCGCTGGGGAGCCGGAACTGTAAATTCCTACTGTGGTTCGAGTCCACAAACCACTGAGAGCT
CTGGCATCGGTTCAGGCTAAATCCTGAAGAAAGCTAGAAAGCGCTGTTTGATGAGCCTGCGTCCG
ATTTGTGAGTTGGTTAGGTAAAGGCTGACCAAGCCAATGATGCTT
Found at i:58872 original size:39 final size:39
Alignment explanation
Indices: 58818--58937 Score: 240
Period size: 39 Copynumber: 3.1 Consensus size: 39
58808 TTCCTCTCAC
58818 AAACTATCAATTTCATAAGAGAAGAAAGATCGTTTTTCG
1 AAACTATCAATTTCATAAGAGAAGAAAGATCGTTTTTCG
58857 AAACTATCAATTTCATAAGAGAAGAAAGATCGTTTTTCG
1 AAACTATCAATTTCATAAGAGAAGAAAGATCGTTTTTCG
58896 AAACTATCAATTTCATAAGAGAAGAAAGATCGTTTTTCG
1 AAACTATCAATTTCATAAGAGAAGAAAGATCGTTTTTCG
58935 AAA
1 AAA
58938 AGAAAGAAGG
Statistics
Matches: 81, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 81 1.00
ACGTcount: A:0.42, C:0.12, G:0.15, T:0.30
Consensus pattern (39 bp):
AAACTATCAATTTCATAAGAGAAGAAAGATCGTTTTTCG
Left flanking sequence: Indices 58318 -- 58817
CTCTTAGAGCTATCTCTTTCCGATCTAGGCAGATGGTTGAATCTAATGCGAGTAGCACTAGGCCT
AGAGCGGAATATTAGGTAGTACGAGTTGCTATATTTTTCCATCCCCCTTCGGGAAGAAACTCTCT
TTGACTTTTGAGAAGATAGACCCAAGTAGCCCTTGAATGATCATCCACTATGGTTCAAAAATATC
GAAAACCTTCTGTTCTGTGGTTTCAACTGAAAAAGGGCCCCAAATGTCAATGTGAATCAGATCAA
AAGGTTCATCACAAATGTTATTATGAGATTGAAAAGGTAAGTGTTTTTGTTTAGCCAAAGGACAG
ATTTTACAAATGGTCTGAGATTTTACAAATGGTCTGATTGACCTTTTTATTCTTATGAGTAGGGA
ATCAATCTGAAAGGATAGCAGTTTTAAGAAGAAGGATGGAGCAGAAAGATAGAAAGATCAGTTGC
TGGAAATCAAATATGTAAATAGTCGAGTTATTGCATTCCTCTCAC
Right flanking sequence: Indices 58938 -- 59437
AGAAAGAAGGTTTTGATTCGAGGCGGATCCCTTTTTTCTTTGCCTTTACGAGTAAGAAAGTGGTT
ACGCTCCGCTGGGGAGCCGGAACTGTAAATTCCTACTGTGGTTCGAGTCCACAAACCACTGAGAG
CTCTGGCATCGGTTCAGGCTAAATCCTGAAGAAAGCTAGAAAGCGCTGTTTGATGAGCCTGCGTC
CGATTTGTGAGTTGGTTAGGTAAAGGCTGACCAAGCCAATGATGCTTAGCTGCCCAGTCGTGCCG
AGGAATTCCCATCCGACCAGAGGAGGGAAGAGAGTGACTAAGCAGCAGCTCCACTTGTCGCGTAC
TTCTTTAGCTGCACCGTCATCGCCGGCCGGACAAACCCTTCCAACAAATGGGGAGTGGGCCAAAG
GAACACGACACATCCAGTGAAGAGATCCCGGACAGGGAAGTCAGAAGGTCTGCAAGCCTCGTCTT
CGCCCCTGCTTTAGCTGCACTTGGTGCGTAAGAGGGAGACCCGGT
Found at i:60808 original size:17 final size:17
Alignment explanation
Indices: 60786--60819 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
60776 AGCGGAGCAA
60786 TCTTAAAGATGGAAAGC
1 TCTTAAAGATGGAAAGC
*
60803 TCTTAAAGGTGGAAAGC
1 TCTTAAAGATGGAAAGC
60820 CAGCACAAGC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.38, C:0.12, G:0.26, T:0.24
Consensus pattern (17 bp):
TCTTAAAGATGGAAAGC
Left flanking sequence: Indices 60286 -- 60785
CTGAAAGGAAGCTTAAGGAAAGGCCTTAGTATTCTTTCTTCAAAGGCGTTCCCTGAACAACTACA
GCTCGATAGAGACAACTCGGAAACTAGCACTGAAAAAGGGCATACTATCAATATGATCAATATGA
TATTACCTCGGTGTGCTAATCAAAGGTAAAGAACTGAATACCTAGATTTCTCTTATCCTTCCTTA
GGTCCTCATGAATTAGAATAAAGTAAGGGAGCACACCGATCGAAACCTGTTTACTTTCGAAAGTT
GACCCGCCACCTACTACTTGTAGTCAACCAAAATTGCTTCGCTAGGAGTGTGCTATTAAAAGCTG
TTGATCGGCCTATGGCACTTTACTAAACCTAGGAGAGGAGAACTGCTACTATCTATTGCATGGGT
GCCTGCGTGTAAGAGGTGTAAGAGAAAGAAAGAAATTTCCGTCAACAGGATGAATCCCAGCGAAA
AGAAGGCGGAAAGCCTATGAAAGGTGGAAAGCCCTAGCGGAGCAA
Right flanking sequence: Indices 60820 -- 61319
CAGCACAAGCACACTACTGTGAAAGCTAAGAGTACTTCTATATTAGGAATTTTGCTAGTGGCGGA
TACGTACTATCTTCTTTATATTGACATTCTGCTACCCGGGAATCCAGTTCGTAAAACTCGGAGAT
ATCAAACGGAAGTAAAAAAAAGCAGAGAAGGATTAAGACTAACCACTTTTTCGACATCCCTTCAT
GAAGCGCAGCAACATTTCGGAAGACTGCTAAAAGCGAGAAGTCCTGACCTTCGTTACTAGAGCAC
AGAAAAAGCAACAGTGTGCTGTACAGAGAACTTGCTTCGATAGGAAAAGAAAAGCTGTATTTCTA
AGCTGGGAATGTTGGGTAAGAGTCCGCCTATTACCTCTAAAAAGTGGAGGAGGTGAGATCCCTGT
TGGAGTCAACTTTTGAATTTACCGGCTTTGGAGAAACCTTTTCAGTTGCTTAGTGCGAATCCCAC
GTTTCGAGGGTGGGTAAGGTCTCAGTACCTCGGATATAGCACAGA
Found at i:62543 original size:13 final size:13
Alignment explanation
Indices: 62522--62552 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
62512 CAAAGGTCAA
*
62522 CTAGCTTGCTTCG
1 CTAGGTTGCTTCG
62535 CTAGGTTGCTTCG
1 CTAGGTTGCTTCG
62548 CTAGG
1 CTAGG
62553 GACTTAAGGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.10, C:0.26, G:0.29, T:0.35
Consensus pattern (13 bp):
CTAGGTTGCTTCG
Left flanking sequence: Indices 62022 -- 62521
CGCACACACGAAAGTCAAGGGATTGTCTGGCCCTGCTACCTACCCAACATGAGCACACTCCGAAA
TTAGAGTAGCTATCTATTTCATAAGAGACCTCTTGCAGATTGAAGCATGATTGGGCTCTCCGCTT
CTCTTCAGATGGAACTTCGCCATGTCCATGTCCCTCGAGTACTGTTCCTAGAGTATAGTAGAGTA
CGGATCGATTGAACTGGTTTCTGTCGTACCCCTAACGGTACAGTTATGACCTAATGCGGGGTCTC
TCTCAGGCAGAAGATCAACCGATGTACGATGTTGGACCTAATGAGAGGTCCTTCTCTGTCAGGGT
TTATAGGTCAACTGGTTGCTTCGCTAGAGTAGGACCTAACCCATGTACTGTGAGTGTTGATTAGT
CACCCTGATATCGAGTGAGCATTCGGGGGTGTAGACTTCACACTTTAACAGGTCATCTGTCTTTC
GAAGTTTTCTGTAACACAGAGATGTAGTTGCAAGGCAAAGGTCAA
Right flanking sequence: Indices 62553 -- 63052
GACTTAAGGAGAAGTGATTTTCTGTAGCACAGAGATGACTTTAGTAAGTTGCAAGGCGAAGGCCT
CAACGATTGTGGTTAATCTATCTTGGTATCTTTGTGATGAGGTATGGCTTATCTGTGCTGGGGTG
TGCTTGGGAGTCAAATGCTAGGGTCATGCGAAAAGTCCTATTTCCAATTCCGATCTCATATCTAA
GGAACGGGAGTTCTTAACAGAAGAAAGGCCATAGACTCCGTTTGGTACGTATCTGATATGTGACA
AATCCTAAATCTGCAAGGTATCTTATCTCTCTCAGTTATTAATATGGTGCTGGACTAGCGAAGCA
ACCCTTTTGAAGAAGGAATCTTAGGAGTTCTGCAGCATATGGATGGCTTAAAGGAAGAAATCAGA
CATCTGAGATAAGCAGGGCTGTTGTCTAATCTGAGGAATGCATACGAATCCTATAGTAAGTTCAC
GGGTAATTCTCCGCTTAGTTCAGTAATCTCCTGAAAGTTGGGTGA
Found at i:66747 original size:26 final size:26
Alignment explanation
Indices: 66711--66762 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
66701 ACATTTCATA
66711 GTTTGAAAGCGCTCTTTAGTGACTTT
1 GTTTGAAAGCGCTCTTTAGTGACTTT
66737 GTTTGAAAGCGCTCTTTAGTGACTTT
1 GTTTGAAAGCGCTCTTTAGTGACTTT
66763 CATGTCTTCT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.19, C:0.15, G:0.23, T:0.42
Consensus pattern (26 bp):
GTTTGAAAGCGCTCTTTAGTGACTTT
Left flanking sequence: Indices 66211 -- 66710
TCTTAATACGCTTAGATAGTTCATTGACTTACGCTTAGATTAGATAGTTCATTGACTACGAGACT
GGAATCTGATGCTTCTTTATGGTCCGATCCTAAAAGCAAGAGAAGTTTAGGTAGGAGTACGTCGC
TTCTTTCTTTTTCATATCTGCTGTCCCAGCTGAGTTCCGCTATCAACTAATTATAGTCGCATAGC
AAGCGATGTAATAAATCACTGAGATCTTTTGAATTTCAAGTAAATCATAGATAAAGCATTAAGTA
GGAGCGGTAGCTTTCTGCTTCGGTTGGCGCGTTGCAGTAATGAAGAAAAGAATGAGATTGGTTCG
GTCTTAAGTCTTTGGGTGAATCAATTTAGGTATCGAAGTTTTAGTTATTGCCATCCCTTGCTTGG
CAGCAGTGGGCTTGGTAGTAGCATAGGTGGGTCCTCGGGCAGTTTTTTCAGGGCGTAGGGATCAC
TGTCTCACTGTGGTACCCGAAAACTTTCTATGCCCACATTTCATA
Right flanking sequence: Indices 66763 -- 67262
CATGTCTTCTGCTACTTTGACTTTAGGAAGATTCAGACAGTCTTTTATGCCCTCTTTTAGGTTTG
TTTTTTCCTTCCCCCAATTCTAGGATGCGTAGTAGCTCTAGTAAGTCCGTAGCTGGATCTGGCAG
GATGCGGAGTTTGAGCTGCGGGGTGAGGGATGGGATAGACATAGCCATCTCTCCCTTCTCCGGCT
CTTCTCTTATGGTCTCTAATGATGGCTTATCCACTACTACTTGCTTCCTTCCCTTTATCCTTCCT
CACAACAACTTGCTCCTCTTCCTTATCATCTCTCACAACTGCCTCAATCAGTTTCCCTTTCTTCC
CAGGTGCGCTTGATTGGGAAGAAAGATCTGGGGTGGGGAATCTATCAACTTGCAGCAGCCCCAGT
CTTCCTTCTCCTTTGAGCACCGGCTTTTAATGGGTATGAAAGAACTAGATGGGAGGCCTTTTCCG
GGTAAGAGAAATAGTAGTGAGAGGTAGTGAAAGCCCTTTCGTCCT
Found at i:69655 original size:36 final size:36
Alignment explanation
Indices: 69608--69694 Score: 149
Period size: 36 Copynumber: 2.4 Consensus size: 36
69598 AAAGCCTGAA
69608 AGAAGAAGGTTGACTCGGCAATCTCAATTTCGTATG
1 AGAAGAAGGTTGACTCGGCAATCTCAATTTCGTATG
69644 AGAAGAAGGTTGACTCGGCAATCTCAATTTCGTATG
1 AGAAGAAGGTTGACTCGGCAATCTCAATTTCGTATG
* *
69680 AG-TGATGGTTGACTC
1 AGAAGAAGGTTGACTC
69695 ATGAAAGTGC
Statistics
Matches: 49, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
35 11 0.22
36 38 0.78
ACGTcount: A:0.29, C:0.16, G:0.26, T:0.29
Consensus pattern (36 bp):
AGAAGAAGGTTGACTCGGCAATCTCAATTTCGTATG
Left flanking sequence: Indices 69108 -- 69607
GGAGTAGATGCCGGGGGGAGAAGGAATTCTACGACTGATTGAGCCAACAAATCCTAGCTAGAATC
TAATCTGGAAAGAACTTGGAACTCTCAACCATAGCTTTGATTTGCTTTTCTTATTGGCAGAAGTC
AAGGCGATTTGAATCTCAAAGAGGCCGATAGGACCAGTATCGGACGAGATATTGACAAAAGGAAA
ATCATTCCATTCTTGTCCCTTCTTGGATTTGAAAACGAAAAGTACGTTCGGGCAGAAGTCTTGTA
TGAGTTAGCCACTGCTTCAAGCAGAAAATGGAATTTTCCTTGTTGAAAACAAGAGATTTCAAGAG
GAGTTAGATAAGGAAACGGAGACTTTACCTGTAAGTCAGTATATTGACAGTGCCCCAAGACAATC
TGAAGCACTGACTGGAATCAATCAGCAGCTGAATGCAAGGATTACTTCAATAAACAATTGAAACC
AACAAGACCTTTTCTTTTCCATCAGGAGACCATTCAAAGCCTGAA
Right flanking sequence: Indices 69695 -- 70194
ATGAAAGTGCAATGGAAGGGTGAAAGCCGATGAACGCCTTTCAGTCGAGTTTGTTTCACAACCTC
TCCTTTTCAGTCGAGTCACTGGGGTTCCTCTCGCAACGAGTGCTCGAGTATGTTAGTGTTCAGTA
TATCATGTTAGTGTTCAGTATAGCCGGGATTGTAGTTCAATCGGTCAGAGCACCGCCCTGTCAAG
GCGGAAGCTGCGGGTTCGAGCCCCGTCATTCCCGACCTAGGATCTGATGTATCGATCAATTAATC
TCTCATCAGTTACGAAATATATAGCTATAAAAAAAAAAAAGCTAGAAATAGAATTCAACTTAGTT
TCTCAGTCTCTAGGAATTCCTAAGCGTTAGCGAAGAAAGAAGCCTACTTGAAGAAGGCTGCCAAG
AGGAGAGCAAGCGCCCTACCCGAGTCTCCAGCGAGAAGCGTTTTATATATAATATAAATTATTAT
CGATCGAAACCTAAAGCCAAGTGCATCGATCGGTTTCCTTGCGTT
Found at i:69834 original size:20 final size:20
Alignment explanation
Indices: 69809--69846 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
69799 GTGCTCGAGT
69809 ATGTTAGTGTTCAGTATATC
1 ATGTTAGTGTTCAGTATATC
69829 ATGTTAGTGTTCAGTATA
1 ATGTTAGTGTTCAGTATA
69847 GCCGGGATTG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.26, C:0.08, G:0.21, T:0.45
Consensus pattern (20 bp):
ATGTTAGTGTTCAGTATATC
Left flanking sequence: Indices 69309 -- 69808
CCATTCTTGTCCCTTCTTGGATTTGAAAACGAAAAGTACGTTCGGGCAGAAGTCTTGTATGAGTT
AGCCACTGCTTCAAGCAGAAAATGGAATTTTCCTTGTTGAAAACAAGAGATTTCAAGAGGAGTTA
GATAAGGAAACGGAGACTTTACCTGTAAGTCAGTATATTGACAGTGCCCCAAGACAATCTGAAGC
ACTGACTGGAATCAATCAGCAGCTGAATGCAAGGATTACTTCAATAAACAATTGAAACCAACAAG
ACCTTTTCTTTTCCATCAGGAGACCATTCAAAGCCTGAAAGAAGAAGGTTGACTCGGCAATCTCA
ATTTCGTATGAGAAGAAGGTTGACTCGGCAATCTCAATTTCGTATGAGTGATGGTTGACTCATGA
AAGTGCAATGGAAGGGTGAAAGCCGATGAACGCCTTTCAGTCGAGTTTGTTTCACAACCTCTCCT
TTTCAGTCGAGTCACTGGGGTTCCTCTCGCAACGAGTGCTCGAGT
Right flanking sequence: Indices 69847 -- 70346
GCCGGGATTGTAGTTCAATCGGTCAGAGCACCGCCCTGTCAAGGCGGAAGCTGCGGGTTCGAGCC
CCGTCATTCCCGACCTAGGATCTGATGTATCGATCAATTAATCTCTCATCAGTTACGAAATATAT
AGCTATAAAAAAAAAAAAGCTAGAAATAGAATTCAACTTAGTTTCTCAGTCTCTAGGAATTCCTA
AGCGTTAGCGAAGAAAGAAGCCTACTTGAAGAAGGCTGCCAAGAGGAGAGCAAGCGCCCTACCCG
AGTCTCCAGCGAGAAGCGTTTTATATATAATATAAATTATTATCGATCGAAACCTAAAGCCAAGT
GCATCGATCGGTTTCCTTGCGTTGGGAGGGAGATTGAATGAACGCTTGAAAGCTAGCGGGGACTC
AGAGAGAAGAGAGCCAGGGATATCCAACCCAGGAATCGCACGCAGGCTTCCCGCCCCCTTTCTCT
GACGAGGGCGAAGCAGAGATCGAATGCTTCCAAAGCAAGGAAAAG
Found at i:87046 original size:12 final size:12
Alignment explanation
Indices: 87029--87055 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
87019 GAGGTTCCCT
87029 CTCGAGGAACGC
1 CTCGAGGAACGC
87041 CTCGAGGAACGC
1 CTCGAGGAACGC
87053 CTC
1 CTC
87056 TTCTCATTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.22, C:0.37, G:0.30, T:0.11
Consensus pattern (12 bp):
CTCGAGGAACGC
Left flanking sequence: Indices 86529 -- 87028
CATGCCCCCACTATACTTTCTTCTAAGCCAGCTTTTCACTCTTTGTTTTCGTATCATCTCATTGG
ACTTATTTCAAACAAACTCGTTACACTCGCACCTGATACACGGGAACGAAGAAAACTACATGGGG
AGCACGCTTACACCTGCAAGAACTAAGGGTCCAGACCAAGCACAGACAGATAGAACCAGACATCA
AAAATCTTCCTTTGCACAATGCCTATCAGATATGGAAGGAGGATCTTTCAAGAGAAACTTCCATT
TGATTTTCTAGCTCCGAGAGCTACTTTAATGGCTTGTGCCCATAACAAGTAGTTATGACCATTCA
ACTTTACAGAGGTAATCTGCATACTGACCTGATCAGATGAAGTGTTGGAGGCGGATTTATTTGAG
TTAGAATCAGCCATGACGAATAACGTTGAGAAAGACCACCCAAGAAAGAATAAAGAAGCAACCCC
CACAACCATGGAGAATATGAGAGCAAGCCTAAGAAGAGGTTCCCT
Right flanking sequence: Indices 87056 -- 87555
TTCTCATTATATGATTTGTGTGAACACAGTAAAGTCCCACCATAAGCATTCTCTGCATCTCCACT
GCATTAAATGAAACTAAACGTCCCTTTCAACTTTGGATCAACTGCCTCAATCAGTTTCCCTTTCT
CCCAGTAGCTCCATACCAATCAACAAGCACCGTACCAGCATCATCGACAGGCCTTTTCCCTGTAG
CTACCTCTAGCACCACTAGACCGAAGCTGTAAACATTTCTGTGATGGAACACCATAATAAACATA
TTAAGGAGCAAGATCTCCCATTTTCCCAGCTGGTATTGTAGCTTCCCTGGTTATAGAACTATGTT
CATAGACTTCTGCCTAAATCTCCTAGCTTGGCATTGAATTCTGCATCAAGCATTATATTTCAAGT
CTTAACTAACGTCCCTATGAATTCTTTCTCTCTCACATTCTGAATGCAGATATGATAGAGCAGAC
GCAACTCCGAGAACTAGATTCAACCTTTGCTTTCTTTTCCTCTGG
Found at i:123741 original size:21 final size:21
Alignment explanation
Indices: 123717--123773 Score: 114
Period size: 21 Copynumber: 2.7 Consensus size: 21
123707 TATATTCCTA
123717 CTGTTGTTATCTGTTAATATG
1 CTGTTGTTATCTGTTAATATG
123738 CTGTTGTTATCTGTTAATATG
1 CTGTTGTTATCTGTTAATATG
123759 CTGTTGTTATCTGTT
1 CTGTTGTTATCTGTT
123774 CTCTGTCCTT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 36 1.00
ACGTcount: A:0.16, C:0.11, G:0.19, T:0.54
Consensus pattern (21 bp):
CTGTTGTTATCTGTTAATATG
Left flanking sequence: Indices 123217 -- 123716
TGGGAATGCGTCCTTTGTCCGCTTCCCTTTCCTTGGTTGTGTCTGTATTACGGGCTGCTTTCTCG
ATCCTTCTATTGTTGCGTGGAAGTGCTGCTTTCTTCCTGATAGTTGTATCCCCGAATCCAACTAT
GATTTGCTGAGCTGTTGCAGCTCCTTTCCTTTCTTCTTTGTGGGCGGACTGAGAAGGGCCCGTAT
ACCGTACGTATCCCTCCGGTGATTGTCGTTCTGTCTTCCCTTTCCTTCCGGGTTGTCTGGGACTG
GCTTCAATGTTCGGGTAGCATTACCTTTGTTCTGCTCTCCTCTCTTTGAAGTGTACTTTCCGGCC
GAGAAGTAGCTTTCTTTCTAATATAGGTTTTTCTCTGACGACTAACCTATATTAGTTCCTGCTGC
TACTGTATGTTGTGTACCGAGTGCTGGCTGTTATAGTATGGTTATAGCGTTGATGGATTGTTTGT
TATCTCCTTACTGCTATTAGCTGTTGTTATAGGGCTATATTCCTA
Right flanking sequence: Indices 123774 -- 124273
CTCTGTCCTTACTGTTGTTAGGTGGGAATAGGTTGTTAGCGTAGCTTCTGTTCCTATGCTTGAAT
GTGTAGTGAAGGAATGGAGGGAAGCTCTTATTAACGGCCGGAGCTAAACTCCGCTTAGCCCGGAC
AGGGACAACCAAAGCAGGAACTTAGAGACTCCTAGTAATACATCATACCTACTAAATCAGTCTAT
TGGGGCTATAGGTGTTCCCCCCGGGAAAATAACCAATGGAGTTGATTACGTTGTGAGTAAACGAG
GAAAGGCGTAACATTTCATAGTTAAGGGTCGTTCATTAGCCCTACTAGTCAAGCACGGGAAGCTC
ACTTTCTATCAACAAAGCTAGCGGGGTTTCCGGGCCTTGTTTTGGTCCAATGTGAAAAGCTACAT
CCGAGGAATTGTATGATTCAGATACCTGACGAAATAAAGAGAGAAAAGATCGGGCGGGATAGCTG
GGATGACCTATTTCAAGATCAGATGATCCACCAGCTTGTCTGCTT
Found at i:142588 original size:34 final size:34
Alignment explanation
Indices: 142528--142595 Score: 100
Period size: 34 Copynumber: 2.0 Consensus size: 34
142518 AAGAGTTTTT
*
142528 AAGGAGGAACCCAGCTTATCCCCTCTCAGCGGAG
1 AAGGAGGAACCCAGCTTATCCCCTCTCAGAGGAG
* **
142562 AAGGAGGAACCCAGCTTCTCTTCTCTCAGAGGAG
1 AAGGAGGAACCCAGCTTATCCCCTCTCAGAGGAG
142596 GAACCCCTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
34 30 1.00
ACGTcount: A:0.26, C:0.29, G:0.26, T:0.18
Consensus pattern (34 bp):
AAGGAGGAACCCAGCTTATCCCCTCTCAGAGGAG
Left flanking sequence: Indices 142028 -- 142527
GTACTCAGGGTACACTGAACACCACAAAAATCTCGATGAAACTCTGAGAACTAGAAGCAAGGGAA
TCAAAAAAGTCTATTCTTGACGTGAACGACCGCTTTGTCATTAGAGTGTGAGAACCTTAAGGAGA
AAGCTTTTTGATTGATTTGTTTACTCAACTCGTAAAGGCTCATCAAACAGCGCTTTCTAGCTTTC
TTCAGGATTTAGCCTGAACCGATGCCAGAGCTCTCAGTGGTTTGTGGACTCGAACCACAGTAGGA
ATTTACAGTTCCGGCTCCCCAGCGGAGCGTAACCACTTTCTTACTCGTAAAGGCAAAGAAAAAAG
GGATCCGCCTCGAATCAAAACCTTCTTTCTTTTCGAAAAACGATCTTTCTTCTCTTATGAAATTG
ATAGTTTGTGAGAGGAATGCAATAACTCGACTGTAAGGTCCACCAGGTCCGTAGGAGAGTCAGTC
TTTCTCTAAGCAAGCTGTTTTCTGGCCTATACGGAAAGAGTTTTT
Right flanking sequence: Indices 142596 -- 143095
GAACCCCTTTCCTTCCGTCAGTCTCCAATTTTCGTTAGTTCTCTCTCTCTCTTAACAGAGCGGAA
TTCTCCCAGGTTTCAGTCTCTTTCGCTTACTGACGAACGGAGCACTCGCATGTCTTTAATACTAA
ATATATCCCTATTCACCACATAGGAACCGGCCGGAGCTTTACTAATTACGAATCATGAAATGTTG
ACCGAACAGTAAGCCATTTACCTGGATCCCATTTACCCGATGCTGCAACCAGGACTTTATTATTG
ACTGGACTCTCCTATACTCGGAATTGCAGGTGGAGTTTCAATTCTCTCGTGTAGAGCTATTACCA
ATATATCGATCCTTCTGATGTTCACAGTTTGACTTGTGGTTAGACTCTTCCTCTAAAGAGTTCAA
CTGCTTGTCCCTTCCGAAAGTGGTTTACATGGGGCTGGTAGGTCTCTGGTTGTGACCCCCGGAGG
AACCCTGGCTCTAAATAGCAAGACTCGGTTTTGTTCCGTTTGATT
Found at i:158037 original size:25 final size:25
Alignment explanation
Indices: 158003--158062 Score: 120
Period size: 25 Copynumber: 2.4 Consensus size: 25
157993 GCTTAGTTGC
158003 GGAGGAACCCTTCTTCAGCGAAGCT
1 GGAGGAACCCTTCTTCAGCGAAGCT
158028 GGAGGAACCCTTCTTCAGCGAAGCT
1 GGAGGAACCCTTCTTCAGCGAAGCT
158053 GGAGGAACCC
1 GGAGGAACCC
158063 CTATGGCTAG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 35 1.00
ACGTcount: A:0.25, C:0.28, G:0.30, T:0.17
Consensus pattern (25 bp):
GGAGGAACCCTTCTTCAGCGAAGCT
Left flanking sequence: Indices 157503 -- 158002
GCAGCTAGGATAGGAACTCTAAACTAGCTACTAGAGGAAGTCAAGCTACTAACAGAGCTCAAAGC
GGATAAGAAATCGGAAGAGACAGACGCAAGGAAGAGGCGTTCCTCGGTGCTATTGCCCTCTTGTC
CTAGCAGCCGATCACTCACTAATAGCTACTACCAGGAGGAGAGGCATTTTTTCGAACAGGATCCT
TTCCGGTGGATTGGAATTTGACTCAGATTTGCTTAATCCCCAAGAAGCTCAATCCTCGGTTAATG
ACAGAGATGCGACCCATTAGTCTTTGCTCAGTCATGTATAAGATCATATCAAAGATCATGGTGGC
CAGACTCAAACCGATTCTGCCTTCCCTTGTGTCTCCTACACAGTCTGCATTTGTTTCGGAAAGGC
TTATATCTGACAATATTTTAATAGCCCATGAGTTGGTTCACAATCTGCGTACTCACCCCTCATTT
CATCAGCTACTCTCCCCTCATTTCATTGGTCACTGGCTTAGTTGC
Right flanking sequence: Indices 158063 -- 158562
CTATGGCTAGCATTGTTCTTGCTTCACTCACTTACATTCCCTTCATTCAAACTTCTTCTAATTCA
CATTCACTTACCCAACTTCTCTGGCTTAGGGTCAGGGTTACTCACATTCCTAGTTATAAGATTCC
TAGTTCTGGGTCTGGGTAAGGGAAGGGTCTAGGTTCCTAACATTCCTTCCCAACTCACCACTTAT
CTCCCTAGTTCTTGAATTCCAAGTTCTGGGATTCTTTGATTCTGAGTTCTGAGATTGTTAGTTCT
GGGACTGAGAGTGCCAGGCTGCGACCCATCTTTGCAAAGCAAGAGCGAGGCCAAGAAGCAGCAGC
GCTCGTACACTAGAAGGATTTGGGTATAGAGCCCGCTACGCGCCTTCAAAGGCCGGAAAGAGATT
TCGCTTTGGCTTTGGTTCGCTTGACCGTGTGACTATGGTTCCTGTGGTCTTGTTCAAATAGAATC
AGTCCCCTTTGGGTGCTATCACATAGCCCTAAACAGGGCAAGGAA
Found at i:165791 original size:18 final size:18
Alignment explanation
Indices: 165770--165875 Score: 113
Period size: 18 Copynumber: 5.6 Consensus size: 18
165760 ACCTATCATT
165770 AAAGGGGAAATAGAGGGG
1 AAAGGGGAAATAGAGGGG
* *
165788 AAAGAGGAAAAAAAAGAGGGG
1 AAAG-GG--GAAATAGAGGGG
165809 AAAGGGGAAATAGAGGGG
1 AAAGGGGAAATAGAGGGG
* *
165827 AAAGAGGAAAAAAAAGAGGGG
1 AAAG-GG--GAAATAGAGGGG
165848 AAAGGGGAAATAGAGGGG
1 AAAGGGGAAATAGAGGGG
*
165866 AAAGAGGAAA
1 AAAGGGGAAA
165876 AAAAGAGGTT
Statistics
Matches: 73, Mismatches: 9, Indels: 12
0.78 0.10 0.13
Matches are distributed among these distances:
18 37 0.51
19 4 0.05
20 4 0.05
21 28 0.38
ACGTcount: A:0.54, C:0.00, G:0.43, T:0.03
Consensus pattern (18 bp):
AAAGGGGAAATAGAGGGG
Left flanking sequence: Indices 165270 -- 165769
AAGCCTTATGAGCAGAAGTAATAAATACCTCGGGGAAGAAGCGGGGTAGAGGAATTGGTCAACTC
ATCAGGCTCATGACCTGAAGATTACAGGTTCAAATCCTGTCCCCGCACCGTAGTTTCATTCTGCA
TCACTCTCCCTGTCGTTATCGACCTCGCAAGGTTTTTGAAACGGCCGAAACGGGAAGTGACAATA
CCGCTTTTCTTCAGCATATAAATGCAATGATTACCTTTTTCGAAAAATTGTCCACTTTTTGTCAT
AATCTCACTCCTACTGAATGTAAAGTTAGTGTAATAAGTTTCTTTCTTTTAGCTTTTTTACTAAT
GGCCCATATTTGGCTAAGCTGGTTTTCTAACAACCAACATTGTTTACGAACCATGAGACATCTAG
AGAAGTTAAAAATTCCATATGAATTTCAGTATGGGTGGCTAGGTGTCAAAATTACAATAAAATCA
AATGTACCTAACGATGAAGTGACGAAAAAAGTCTCACCTATCATT
Right flanking sequence: Indices 165876 -- 166375
AAAAGAGGTTGGAAAATGGACCGAGAAAATAATGCTTTGTGAACCCAATTGCTTTGACAAAAATA
AAGAAAGAAGCAAAATCTCATTCAATTTGAAATAGAAGAGATCTCTATGCCCCCTGTTCTTGGTT
TTCTCCCATGCTTTTGTTGGTCAACAACCAACCACAACTTTCTATAGTTCTTCACTACTCCTAGA
GGCTTTCCTAATGAAGCTGTCTGGAGGGATTTGTTGAAATCAATTAATCTAATCATGCCTCAACT
GGATAAATTCACTTATTTTTCACAATTCTTCTGGTTATGCCTTTTCTTCTTTACTTTCTATATTT
TCATATGCAATGATGGAGATGGAGTACTTGGGATCAGCAGAATTCTAAAACTACGGAACCAACTG
CTTTCACACCGGGGGAAGACCATCCAGAGCAAGGACCCCAACAGTTTGGAAGATCTCTTGAGAAA
AGGTTTTAGCACTGGTGTATCCTATATGTATGCTAGTTTATTCGA
Found at i:165824 original size:39 final size:39
Alignment explanation
Indices: 165770--165883 Score: 221
Period size: 39 Copynumber: 2.9 Consensus size: 39
165760 ACCTATCATT
165770 AAAGGGGAAATAGAGGGGAAAGAGGAAAAAAAAGAGGGG
1 AAAGGGGAAATAGAGGGGAAAGAGGAAAAAAAAGAGGGG
165809 AAAGGGGAAATAGAGGGGAAAGAGGAAAAAAAAGAGGGG
1 AAAGGGGAAATAGAGGGGAAAGAGGAAAAAAAAGAGGGG
165848 AAAGGGGAAATAGAGGGGAAAGAGG-AAAAAAAGAGG
1 AAAGGGGAAATAGAGGGGAAAGAGGAAAAAAAAGAGG
165884 TTGGAAAATG
Statistics
Matches: 75, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
38 11 0.15
39 64 0.85
ACGTcount: A:0.54, C:0.00, G:0.43, T:0.03
Consensus pattern (39 bp):
AAAGGGGAAATAGAGGGGAAAGAGGAAAAAAAAGAGGGG
Left flanking sequence: Indices 165270 -- 165769
AAGCCTTATGAGCAGAAGTAATAAATACCTCGGGGAAGAAGCGGGGTAGAGGAATTGGTCAACTC
ATCAGGCTCATGACCTGAAGATTACAGGTTCAAATCCTGTCCCCGCACCGTAGTTTCATTCTGCA
TCACTCTCCCTGTCGTTATCGACCTCGCAAGGTTTTTGAAACGGCCGAAACGGGAAGTGACAATA
CCGCTTTTCTTCAGCATATAAATGCAATGATTACCTTTTTCGAAAAATTGTCCACTTTTTGTCAT
AATCTCACTCCTACTGAATGTAAAGTTAGTGTAATAAGTTTCTTTCTTTTAGCTTTTTTACTAAT
GGCCCATATTTGGCTAAGCTGGTTTTCTAACAACCAACATTGTTTACGAACCATGAGACATCTAG
AGAAGTTAAAAATTCCATATGAATTTCAGTATGGGTGGCTAGGTGTCAAAATTACAATAAAATCA
AATGTACCTAACGATGAAGTGACGAAAAAAGTCTCACCTATCATT
Right flanking sequence: Indices 165884 -- 166383
TTGGAAAATGGACCGAGAAAATAATGCTTTGTGAACCCAATTGCTTTGACAAAAATAAAGAAAGA
AGCAAAATCTCATTCAATTTGAAATAGAAGAGATCTCTATGCCCCCTGTTCTTGGTTTTCTCCCA
TGCTTTTGTTGGTCAACAACCAACCACAACTTTCTATAGTTCTTCACTACTCCTAGAGGCTTTCC
TAATGAAGCTGTCTGGAGGGATTTGTTGAAATCAATTAATCTAATCATGCCTCAACTGGATAAAT
TCACTTATTTTTCACAATTCTTCTGGTTATGCCTTTTCTTCTTTACTTTCTATATTTTCATATGC
AATGATGGAGATGGAGTACTTGGGATCAGCAGAATTCTAAAACTACGGAACCAACTGCTTTCACA
CCGGGGGAAGACCATCCAGAGCAAGGACCCCAACAGTTTGGAAGATCTCTTGAGAAAAGGTTTTA
GCACTGGTGTATCCTATATGTATGCTAGTTTATTCGAAGTATCCC
Found at i:189632 original size:39 final size:39
Alignment explanation
Indices: 189578--189697 Score: 240
Period size: 39 Copynumber: 3.1 Consensus size: 39
189568 TTCCTCTCAC
189578 AAACTATCAATTTCATAAGAGAAGAAAGATCGTTTTTCG
1 AAACTATCAATTTCATAAGAGAAGAAAGATCGTTTTTCG
189617 AAACTATCAATTTCATAAGAGAAGAAAGATCGTTTTTCG
1 AAACTATCAATTTCATAAGAGAAGAAAGATCGTTTTTCG
189656 AAACTATCAATTTCATAAGAGAAGAAAGATCGTTTTTCG
1 AAACTATCAATTTCATAAGAGAAGAAAGATCGTTTTTCG
189695 AAA
1 AAA
189698 AGAAAGAAGG
Statistics
Matches: 81, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 81 1.00
ACGTcount: A:0.42, C:0.12, G:0.15, T:0.30
Consensus pattern (39 bp):
AAACTATCAATTTCATAAGAGAAGAAAGATCGTTTTTCG
Left flanking sequence: Indices 189078 -- 189577
TTGCCTTACCACACCAACCACCTTAGCACTGGAAGTTCTAGCAATGGGCAGCTAGGCAAAGGAAA
ATTAGCTATCTAATGAATATTCATTAGATAATAGATTGTGGATCTGTTCTTAGCTCGTGCAATCA
ATAAAAGCGGTCCTTCGCCTTAGTAAGCTAGCTTTCTAAGCCCGGGCGTGGATCGATCGTGACGA
AAATGGGACTAATCCTCTGTACTGTAATAGAAGAGTCAGAGTCCCTTCTCGACCAGACGAAGGAG
ATAGGAATGGAATTCTGCCTTGACCCTCCTGGAGGCGCAAAGTTCATAATTCAGTGTGGTGCGGC
CTAGTAGTATTATAAGGATGTTGGTTTCGTATATAAGAAGACTGCTGCTTAGAGGAGAGTGATCT
GTTCATCTAACTCAAAATATTTAAGAAGAAGAAGGATGGAGCAGAAAGATAGAAAGATCAGTTGC
TGGAAATCAAATATGTAAATAGTCGAGTTATTGCATTCCTCTCAC
Right flanking sequence: Indices 189698 -- 190197
AGAAAGAAGGTTTTGATTCGAGGCGGATCCCTTTTTTCTTTGCCTTTACGAGTAAGAAAGTGGTT
ACGCTCCGCTGGGGAGCCGGAACTGTAAATTCCTACTGTGGTTCGAGTCCACAAACCACTGAGAG
CTCTGGCATCGGTTCAGGCTAAATCCTGAAGAAAGCTAGAAAGCGCTGTTTGATGAGCCTGCGTC
CGATTTGTGAGTTGGTTAGGTAAAGGCTGACCAAGCCAATGATGCTTAGCTGCCCAGTCGTGCCG
AGGAATTCCCATCCGACCAGAGGAGGGAAGAGAGTGACTAAGCAGCAGCTCCACTTGTCGCGTAC
TTCTTTAGCTGCACCGTCATCGCCGGCCGGACAAACCCTTCCAACAAATGGGGAGTGGGCCAAAG
GAACACGACACATCCAGTGAAGAGATCCCGGACAGGGAAGTCAGAAGGTCTGCAAGCCTCGTCTT
CGCCCCTGCTTTAGCTGCACTTGGTGCGTAAGAGGGAGACCCGGT
Found at i:191568 original size:17 final size:17
Alignment explanation
Indices: 191546--191579 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
191536 AGCGGAGCAA
191546 TCTTAAAGATGGAAAGC
1 TCTTAAAGATGGAAAGC
*
191563 TCTTAAAGGTGGAAAGC
1 TCTTAAAGATGGAAAGC
191580 CAGCACAAGC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.38, C:0.12, G:0.26, T:0.24
Consensus pattern (17 bp):
TCTTAAAGATGGAAAGC
Left flanking sequence: Indices 191046 -- 191545
CTGAAAGGAAGCTTAAGGAAAGGCCTTAGTATTCTTTCTTCAAAGGCGTTCCCTGAACAACTACA
GCTCGATAGAGACAACTCGGAAACTAGCACTGAAAAAGGGCATACTATCAATATGATCAATATGA
TATTACCTCGGTGTGCTAATCAAAGGTAAAGAACTGAATACCTAGATTTCTCTTATCCTTCCTTA
GGTCCTCATGAATTAGAATAAAGTAAGGGAGCACACCGATCGAAACCTGTTTACTTTCGAAAGTT
GACCCGCCACCTACTACTTGTAGTCAACCAAAATTGCTTCGCTAGGAGTGTGCTATTAAAAGCTG
TTGATCGGCCTATGGCACTTTACTAAACCTAGGAGAGGAGAACTGCTACTATCTATTGCATGGGT
GCCTGCGTGTAAGAGGTGTAAGAGAAAGAAAGAAATTTCCGTCAACAGGATGAATCCCAGCGAAA
AGAAGGCGGAAAGCCTATGAAAGGTGGAAAGCCCTAGCGGAGCAA
Right flanking sequence: Indices 191580 -- 192079
CAGCACAAGCACACTACTGTGAAAGCTAAGAGTACTTCTATATTAGGAATTTTGCTAGTGGCGGA
TACGTACTATCTTCTTTATATTGACATTCTGCTACCCGGGAATCCAGTTCGTAAAACTCGGAGAT
ATCAAACGGAAGTAAAAAAAAGCAGAGAAGGATTAAGACTAACCACTTTTTCGACATCCCTTCAT
GAAGCGCAGCAACATTTCGGAAGACTGCTAAAAGCGAGAAGTCCTGACCTTCGTTACTAGAGCAC
AGAAAAAGCAACAGTGTGCTGTACAGAGAACTTGCTTCGATAGGAAAAGAAAAGCTGTATTTCTA
AGCTGGGAATGTTGGGTAAGAGTCCGCCTATTACCTCTAAAAAGTGGAGGAGGTGAGATCCCTGT
TGGAGTCAACTTTTGAATTTACCGGCTTTGGAGAAACCTTTTCAGTTGCTTAGTGCGAATCCCAC
GTTTCGAGGGTGGGTAAGGTCTCAGTACCTCGGATATAGCACAGA
Found at i:193303 original size:13 final size:13
Alignment explanation
Indices: 193282--193312 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
193272 CAAAGGTCAA
*
193282 CTAGCTTGCTTCG
1 CTAGGTTGCTTCG
193295 CTAGGTTGCTTCG
1 CTAGGTTGCTTCG
193308 CTAGG
1 CTAGG
193313 GACTTAAGGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.10, C:0.26, G:0.29, T:0.35
Consensus pattern (13 bp):
CTAGGTTGCTTCG
Left flanking sequence: Indices 192782 -- 193281
CGCACACACGAAAGTCAAGGGATTGTCTGGCCCTGCTACCTACCCAACATGAGCACACTCCGAAA
TTAGAGTAGCTATCTATTTCATAAGAGACCTCTTGCAGATTGAAGCATGATTGGGCTCTCCGCTT
CTCTTCAGATGGAACTTCGCCATGTCCATGTCCCTCGAGTACTGTTCCTAGAGTATAGTAGAGTA
CGGATCGATTGAACTGGTTTCTGTCGTACCCCTAACGGTACAGTTATGACCTAATGCGGGGTCTC
TCTCAGGCAGAAGATCAACCGATGTACGATGTTGGACCTAATGAGAGGTCCTTCTCTGTCAGGGT
TTATAGGTCAACTGGTTGCTTCGCTAGAGTAGGACCTAACCCATGTACTGTGAGTGTTGATTAGT
CACCCTGATATCGAGTGAGCATTCGGGGGTGTAGACTTCACACTTTAACAGGTCATCTGTCTTTC
GAAGTTTTCTGTAACACAGAGATGTAGTTGCAAGGCAAAGGTCAA
Right flanking sequence: Indices 193313 -- 193812
GACTTAAGGAGAAGTGATTTTCTGTAGCACAGAGATGACTTTAGTAAGTTGCAAGGCGAAGGCCT
CAACGATTGTGGTTAATCTATCTTGGTATCTTTGTGATGAGGTATGGCTTATCTGTGCTGGGGTG
TGCTTGGGAGTCAAATGCTAGGGTCATGCGAAAAGTCCTATTTCCAATTCCGATCTCATATCTAA
GGAACGGGAGTTCTTAACAGAAGAAAGGCCATAGACTCCGTTTGGTACGTATCTGATATGTGACA
AATCCTAAATCTGCAAGGTATCTTATCTCTCTCAGTTATTAATATGGTGCTGGACTAGCGAAGCA
ACCCTTTTGAAGAAGGAATCTTAGGAGTTCTGCAGCATATGGATGGCTTAAAGGAAGAAATCAGA
CATCTGAGATAAGCAGGGCTGTTGTCTAATCTGAGGAATGCATACGAATCCTATAGTAAGTTCAC
GGGTAATTCTCCGCTTAGTTCAGTAATCTCCTGAAAGTTGGGTGA
Found at i:197507 original size:26 final size:26
Alignment explanation
Indices: 197471--197522 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
197461 ACATTTCATA
197471 GTTTGAAAGCGCTCTTTAGTGACTTT
1 GTTTGAAAGCGCTCTTTAGTGACTTT
197497 GTTTGAAAGCGCTCTTTAGTGACTTT
1 GTTTGAAAGCGCTCTTTAGTGACTTT
197523 CATGTCTTCT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.19, C:0.15, G:0.23, T:0.42
Consensus pattern (26 bp):
GTTTGAAAGCGCTCTTTAGTGACTTT
Left flanking sequence: Indices 196971 -- 197470
TCTTAATACGCTTAGATAGTTCATTGACTTACGCTTAGATTAGATAGTTCATTGACTACGAGACT
GGAATCTGATGCTTCTTTATGGTCCGATCCTAAAAGCAAGAGAAGTTTAGGTAGGAGTACGTCGC
TTCTTTCTTTTTCATATCTGCTGTCCCAGCTGAGTTCCGCTATCAACTAATTATAGTCGCATAGC
AAGCGATGTAATAAATCACTGAGATCTTTTGAATTTCAAGTAAATCATAGATAAAGCATTAAGTA
GGAGCGGTAGCTTTCTGCTTCGGTTGGCGCGTTGCAGTAATGAAGAAAAGAATGAGATTGGTTCG
GTCTTAAGTCTTTGGGTGAATCAATTTAGGTATCGAAGTTTTAGTTATTGCCATCCCTTGCTTGG
CAGCAGTGGGCTTGGTAGTAGCATAGGTGGGTCCTCGGGCAGTTTTTTCAGGGCGTAGGGATCAC
TGTCTCACTGTGGTACCCGAAAACTTTCTATGCCCACATTTCATA
Right flanking sequence: Indices 197523 -- 198022
CATGTCTTCTGCTACTTTGACTTTAGGAAGATTCAGACAGTCTTTTATGCCCTCTTTTAGGTTTG
TTTTTTCCTTCCCCCAATTCTAGGATGCGTAGTAGCTCTAGTAAGTCCGTAGCTGGATCTGGCAG
GATGCGGAGTTTGAGCTGCGGGGTGAGGGATGGGATAGACATAGCCATCTCTCCCTTCTCCGGCT
CTTCTCTTATGGTCTCTAATGATGGCTTATCCACTACTACTTGCTTCCTTCCCTTTATCCTTCCT
CACAACAACTTGCTCCTCTTCCTTATCATCTCTCACAACTGCCTCAATCAGTTTCCCTTTCTTCC
CAGGTGCGCTTGATTGGGAAGAAAGATCTGGGGTGGGGAATCTATCAACTTGCAGCAGCCCCAGT
CTTCCTTCTCCTTTGAGCACCGGCTTTTAATGGGTATGAAAGAACTAGATGGGAGGCCTTTTCCG
GGTAAGAGAAATAGTAGTGAGAGGTAGTGAAAGCCCTTTCGTCCT
Found at i:200498 original size:22 final size:22
Alignment explanation
Indices: 200473--200521 Score: 89
Period size: 22 Copynumber: 2.2 Consensus size: 22
200463 GCCGAAGACA
200473 CTCGACTAAAAGGTTCAAAGAT
1 CTCGACTAAAAGGTTCAAAGAT
*
200495 CTCGACTGAAAGGTTCAAAGAT
1 CTCGACTAAAAGGTTCAAAGAT
200517 CTCGA
1 CTCGA
200522 GCGTAGCGAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.37, C:0.20, G:0.20, T:0.22
Consensus pattern (22 bp):
CTCGACTAAAAGGTTCAAAGAT
Left flanking sequence: Indices 199973 -- 200472
CATAATATTGGATTCAAACCGACGGCCCACCCTTTCTTTGAACCTTGTCAATGATCGAACTTAAA
GATATGAACTGAGTGCCATTTGATGAGTAACTGAGAACAAAGGAGAGGGGTATAGCAAGGATGAA
GTAATGAAAAAGGAAGTCATTGCTAGTAGTAACGACTTATTACGATCCATTGGTTCATATAGAAT
CCATGTCCTAGGTGTATCAAAAAACATTCTTTTCACTAAGCGTATATAATAAAATAGAGTGAAAG
GGTCCACCCCGAAACCAAGGGGATACTAACTAACAGCTGAGTCCTCTCCAAACCGCAGGAGATAG
TTGCCCATCATACGGCTCACCAACTTGCCTCTATGGGAGGCTCACTCCGGGCAGGTTCGGATCAC
TTATAATACAAAGCTCGGAGAAGGAGGGAGTTGGGTTAGGAACGCAGTAACTCGACCCCTCATCA
ACTAATTAATGAGACCTTATCCTTGGTGGGAGAGGGCCGAAGACA
Right flanking sequence: Indices 200522 -- 201021
GCGTAGCGAGAGGTGCTTTAGCAACTCGACTGAAAAGGCGTTCCTCGGAGTCATGACTCGAGCAC
TTGTTGCGAGAGGCACGGAGTGACAAAGGAGCTCGACTGTAAGGCGTTCCTCGAGAGTGAAACGA
GAGGAGAGGTGAGGTTTCAGTTTTCAATATGATTCTTTTTCGTATTTGTTCGATGAGAAATGCGA
GTCAGTTTTGTCCATTTTTTCTATCCCCCTCTATCAAACAAAATGATCAAAAAGGAAGTTTACTG
GCTTCTTATTCTCGTCTTTGATCTCTTCCATCTCTGCCTCGCTCGTTGTCACCTATATATATTGA
AGAAAGAAACCCTGTAGAGAATGAAGAGGGGCCTAGGATCTTCTTCTCAACAGTGCTTCTCGAGG
CTCCCCCCTGAATAAGTAAGGCCCCGTTAGCCTGGGCGAAGATGGGGATAAGGAATAAGGATTGA
AGCCCCTTAGCTCTGCCAGGCACTGAACAGGGGTTAGCTCGGTAA
Found at i:207697 original size:12 final size:12
Alignment explanation
Indices: 207680--207704 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
207670 CACCTTTTGA
207680 AGCTATCAGTTC
1 AGCTATCAGTTC
207692 AGCTATCAGTTC
1 AGCTATCAGTTC
207704 A
1 A
207705 ATCATTCACT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.28, C:0.24, G:0.16, T:0.32
Consensus pattern (12 bp):
AGCTATCAGTTC
Left flanking sequence: Indices 207180 -- 207679
AACATTTATATGTTTCGATGCAACAACAAGATGTTATTTGTAACAAGTAGTTTTGTTGGTTGGTT
AATTGGTCACATTTTATTCATGAAATGGGTTGGATTGGTATTAGTCTGGATACAGCAAAATAATT
CTATTAGGTCTAATGTACTTATTAGATCTAATAAGTATAAGTTCCTTGTGTCAGAATTGAGAAAT
TCTATGGCTCGAATCTTTAGTATTCTCTTATTTATTACCTGTGTCTACTATTTAGGCAGAATACC
ATCACCCATTTTGACTAAGAAACTAAAAGGAGAGGGAAAGAGCTAGCCTTCGTCTCAAGGTTCCA
AACAAGAGGGTAATCAGTTGTGACTACTGAACCTACTAGCTTGCAGAAGTAGCTATCTGAGTAAA
AGCTGCTTTCAAAAGAAGAATAAGGAAGTCTAGCAAGCATTCAAGCAAGTCTCGCTGATCCGCAT
TGTATTGCAAGCTAACCAAAAGGAAAGAGAAGAGTCACCTTTTGA
Right flanking sequence: Indices 207705 -- 208204
ATCATTCACTCGCTAGGAAGAGGGCGTCTCGCATAACTAGGACAGTGAAATTATTTCTTTTCGGA
ATCCGCAATTGGTCAGCCTTTCTCGAGGAACGCCTTTGGTCCGTCTATCTCCTACGAGGAACTAC
GGCCAAGCTAGTTCTTAGTGAGCTTTCTCTCTTCGGGACACAGAACTCCCGGAACTTCCTTTCTT
GATTCACCCAGAACGGAACTTGCTCTAATCCTTCTCGTTCGATCCATTCTTCCTAGCGCTCCTCA
ATCAGATCCATAACTGCTGTTGCTTGTGCAGGAGTAACTGGAGAACTTCTAATTTCAATGCAGTT
GTCAACTAAGAAACACCGGAAGTCCATGCGAGCCGGGCTGACATTAACCAATCAGATACCCTCCT
CGAAAGGGCCTGAAATCAAACACCCAGCCCTATTAGATATTAGATTAGAGAAGGGATAAAGTCGA
GAATGACATTCAAATTGAACAACTGTGTGGTGTGGGCTTCGCCCC
Found at i:208716 original size:29 final size:29
Alignment explanation
Indices: 208684--208740 Score: 114
Period size: 29 Copynumber: 2.0 Consensus size: 29
208674 AACGCCTTTT
208684 CAGTCGAGTTGCTAAAGCACCTCTCCTTG
1 CAGTCGAGTTGCTAAAGCACCTCTCCTTG
208713 CAGTCGAGTTGCTAAAGCACCTCTCCTT
1 CAGTCGAGTTGCTAAAGCACCTCTCCTT
208741 TGCTGTTCGA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.21, C:0.32, G:0.19, T:0.28
Consensus pattern (29 bp):
CAGTCGAGTTGCTAAAGCACCTCTCCTTG
Left flanking sequence: Indices 208184 -- 208683
GTGTGGTGTGGGCTTCGCCCCTTTTGTAAGGGTTTACGAGGTGAACTCGGAAGCGTGGGCGTCAA
GCATCAAGTGGAGGCGCCGAATCGTTGCAAGAGGGGGTACTAAGCGGGATCGACCGGTCAGAAGC
CAAGCTGGCCAAAAGGCATAGGGGTTCCTCTGAGCTGGCAGGCTCATCTCACTGATTGTGTGCTT
TTATTGGATAACTCCCATCAAGGGAAAGTGCACTTTAGCTCTATTCCGTTTCCACAACGTGTTGA
TTTCCCGCGTTGACCCCTAAACACTATGGTATGGCATCAAGGTCGGCAACCCAAAAGGGTCGGGC
CTCAACCGATTGACTTATTTATAAGGGGAAAGCCACGAATATATATAACAAGACAAGCACTTGCA
TACAGAAAGACCCCTTGCGCCTAGACCGATAGCCCACGTCTTCCACGTAAGTAGTTGAGTTAACG
CCCCTTTCGCAACAAGTGCTCGAGTCACTCCGAGGAACGCCTTTT
Right flanking sequence: Indices 208741 -- 209240
TGCTGTTCGAGTAAACAAGAAATGCTCGAGTTACTAAACACCCCCTAGGGGGCCCCTCTCTGATA
AGGAAAAAAACGAAAAAATCTCAAATTTATGAAAAATCTGGTTCGATGGCTGTTCTCCACAAACC
ACAAGGATATAGGGACTCTCTATTTCATTTTCGGTGCCATTGCTGGAGTGATGGGCACATGCTTC
TCAGTATTAATTCGTATGGAATTAGCACGACCCGGCGATCAAATTCTTGGTGGGAATCATCAACT
TTATAATGTTTTAATAACAGCTCATGCTTTTTTAATGATCTTTTTTATGGTTATGCCGGCGATGA
TAGGTGGATTTGGTAATTGGTTTGTTCCGATTCTGATAGGTGCACCTGACATGGCATTTCCACGA
TTAAATAATATTTCATTCTGGTTGTTGCCACCAAGTCTCTTGCTCCTATTAAGCTCAGCCTTAGT
AGAAGTAGGTAGCGGCACTGGGTGGACGGTCTATCCGCCCTTAAG
Found at i:221468 original size:17 final size:17
Alignment explanation
Indices: 221448--221486 Score: 69
Period size: 17 Copynumber: 2.3 Consensus size: 17
221438 CATTTCTTTC
*
221448 ATATCTCCATTCTCATA
1 ATATATCCATTCTCATA
221465 ATATATCCATTCTCATA
1 ATATATCCATTCTCATA
221482 ATATA
1 ATATA
221487 ATAGGGAGGC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.36, C:0.23, G:0.00, T:0.41
Consensus pattern (17 bp):
ATATATCCATTCTCATA
Left flanking sequence: Indices 220948 -- 221447
ATAACGCTTTTCTTCCGATCTCACAGTTCCTTTGTCCCTTGTAAAGCATTCTATCTGTGGCCACG
TGCTACTGTGGAGCTTTTGAATCGACGTCAACCAGAAGAAAGAAGAGAGCCAGAGCGCCATACCC
TTCTCGGAAGGAACCCGCCCTTGGAAGAGCTACTAGGGCATCGCATCTATGCTGAAAGAGCACAA
TCCTTGATCTAGAGGGAGCCATTCCTTACCTTAGAGGAAAAGACTTAGCCCAGTCCTCAGTTTCC
ACTTACAGAATAAATGAATCACTTTGCCACTCGACGAGGCAGATAGCTCCTCTGGTGCTACTATA
GCCTTTGTGGTTGCTTCGCTAGGAAGAGCAGCACTTATATTGCTTGGATTATCTATTCAGCACAA
GCACACCGCTGTGCTGTGGAAGAGTAAACGAACTACTATCGATGTGTTACCTAAGAGATTAGCCT
AAACGAGAAAAGGGAGTGTGCTGGACTGACCTTTGCATTTCTTTC
Right flanking sequence: Indices 221487 -- 221986
ATAGGGAGGCGCTGACCTTACAATTGTAAGAGTTAAATGACCGACTGACTTGAATCTGTTTGCCG
TTGGTCCTTATCTTTAAGATAATGGTAAGAGTGGTAAGGGCTATGGGTATAGAGCCTTGGCCAAG
AGGTTGATTGAGTCAGTAGACCTAACGTACGCTTAAAGAAAAAGACAGCTCTGATCACCCTTTAT
CTTTCTCGGACTCCAGTAATATGTGTGGGGCAAGTAAACGTCAGCAACGAGGACTTCTTATTGGG
CTTACTGCCTCTGCCTGTCTTAGGTACCCAAGGGGAGTCCTACTAATAGCCATGCTGAGCTGTCC
TTATCGTAGTCATCTTTTCCTATTATTGAACAGTTTCAACTTGCATGTGTTAAGCATAAGCTTCA
ATCTTTTGAAGCTCCACTGATTCATCAAAATGCATCCAAAAATCCCGGGATATTAGCACTTTTTC
AGGCTGTTTTGACCTCGTCAATCAAAAACAATATCTTACAACATT
Found at i:227752 original size:18 final size:18
Alignment explanation
Indices: 227713--227754 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
227703 CTGAGGCGTA
*
227713 TTCCA-CAAGACGGTACC
1 TTCCATCAAGAAGGTACC
227730 TTCCATCAAGAAGGT-CC
1 TTCCATCAAGAAGGTACC
227747 TATCCATC
1 T-TCCATC
227755 GTCTGGCAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
17 8 0.36
18 14 0.64
ACGTcount: A:0.29, C:0.33, G:0.14, T:0.24
Consensus pattern (18 bp):
TTCCATCAAGAAGGTACC
Left flanking sequence: Indices 227213 -- 227712
TTCGAGAAAGACAGAAAGCATTGTTTGATCAGCCAGAAGAAAGGCTGTTCCGAAGGTTCAGTTGC
ACATGTGGTCTAAAAAGGTTACAGGTAGTGATGAGCAGCCTGCTCCTAAAGAACGGAAGGAGACT
TGTTTCTTCTCTGCGATGTTCTTGGAAACCGCGGCTTTTGCCCGCCAGCTGCGAATCATTCATTC
AGAACCGGGTGGTATTTTCAGTCCAGGTATTCTCTTTCAACCTGGGTATACTTTGTACCCGTTTG
ATACGAAATTTAGTACCTGGGCAGCTAATGAAGGGTTGAGGTTTTATGAGGCTTGGCCTGGCTTG
GTGTTTGATTCCCTCGCCATGGGCTTCGACCGTTCTTCTCAACCTCTTTATTCCGGACGTTTGGC
TCAGTCCTTAGAGGGTGCCGGAAAGCGGCGTTTGTTTGTAATCGGTAACTGGTTTAAACAACGTC
TGTTATACTCCGTGCATGTGTGGGGTATGTCTGTTCTGAGGCGTA
Right flanking sequence: Indices 227755 -- 228254
GTCTGGCAAAGAGACGCCCAAGATTTATAGCAAGTTTTGACTTGAGCGCTGCCACCGATCGGTGG
CCCGTTCCAGTCATATATGAGCTTATGGCGTGCCTTTTCGGTCAAACGATGGCATCGTGCATTGT
CAATGGTGCCTTAGCACTCAACTCATGCTCTTTGAAGTCCGTTACTGGACGGCATGACGAAGTTG
TGTTTATTGCAGGTCAACCTTTGGGTTATTACGGCTCCTGGGCTCTATTCGCGTTGTCCCACCAT
GCTATTGTGTGGTTGGCAGCATTACGAGCATATCCTCATCAGACGAGACCATTTCTCGACTACGC
TTTGTTAGGTGATGACATCGTCATTGCCGATCGTAGTGTGGCTAAGGAGTACCGTTCTCTACTTG
ATGCTTTGCAAGTAGATATATCTGATGCCAAGTCTATTGTATCTGAGACGGGTTGTCTTGAGTTC
GCCAAGCGGTTCTGGGTTAAGATAATGTCGAAGGACTTATCCCCA
Found at i:230303 original size:15 final size:15
Alignment explanation
Indices: 230283--230312 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
230273 ACCCTTCTTA
230283 TAGAAAACTGGCATC
1 TAGAAAACTGGCATC
230298 TAGAAAACTGGCATC
1 TAGAAAACTGGCATC
230313 CAAAGGTCCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.40, C:0.20, G:0.20, T:0.20
Consensus pattern (15 bp):
TAGAAAACTGGCATC
Left flanking sequence: Indices 229783 -- 230282
CAACTGTTAGAATTTCGATCGAACAAGTATTGGCATTCTGTCAGCATTTCCCCCGCGGTCAGTGA
TAGTTAGGAAAGGAAGAAAGAAAGGGTGATACACGAGAAGCTAGGTCAGGTATATATAGCGATTG
CAGATGGTGCACCAGTTTCGTATACATAGGCCCTGGTTGGTAAGGTGATGAGATCGACACATTAT
ATGCGATCTACGTTCATAGGTTCTACCTTGAAGCTCTTCTCCTTTCCTTACTCTAACAAGTAAGC
AAATAGGAATTACCTTGTGAAGCAACGTAAATTTAGTGAGTTTTGGGAGGTTAGCCTTAACACAT
CCAAATCTTCCGAAGTCAATGCGGTAGCAGCCACTGTCCCGACCTTTTCTGTCACTCCTTCCTTT
GAAAGGAGCTTCTCGCCGTTAAACTCAGCTCTTTTTCCGGCTTTACCGATTAGATCAGTTTAGAC
CTTACCTTGGGATTGGTTTTTTTCCTTTAAGGCTGACCCTTCTTA
Right flanking sequence: Indices 230313 -- 230812
CAAAGGTCCTCAACCAGGGAGAAATCGACAAATCTAGGATAAAGTCCACTTGAATCGACCAAAGG
GGAAGGAAGTATGAAAATCCAATTCTTTGACGGAAACTAAAGGCTAACCTACAAGCTAGCCTCGT
CGAATCGACTCACTCTCCTAACCTCAAAGGGAATCTGAGAAACAAGTAGATCAAGGATTCCCATG
TTGCCTATGGTGTCTTGCGAATTCCTAGGAATGTTAGGAATGGGAGAACCAGTAATCCCAGTAAT
CCCAGGAATAGGAGGTAAGGAGATTAGTTGGTTAGGAGGGAATCCCAGCAATATTAGCAATGAGG
TGATGAGATTAGGTTTGTTTTGGTTAGGGATTAGAGGAATGGGAGAGGTAAGCCAAGTAAGGTAA
GGAGTTTTTGTTTGTAGAAAGTTCCATTTCAATAGGAAGTGTTTTACTCTTTTAATTGGTAGTTG
GTTAAGGAATCCCTGGAATGTTAGCAATGGGAAGAGTTCACCTTG
Found at i:245069 original size:37 final size:37
Alignment explanation
Indices: 245019--245094 Score: 152
Period size: 37 Copynumber: 2.1 Consensus size: 37
245009 GGCTACTCTT
245019 CTTTTTTTTCTCGATCGAGCCGCTCTCCCTCATTCCA
1 CTTTTTTTTCTCGATCGAGCCGCTCTCCCTCATTCCA
245056 CTTTTTTTTCTCGATCGAGCCGCTCTCCCTCATTCCA
1 CTTTTTTTTCTCGATCGAGCCGCTCTCCCTCATTCCA
245093 CT
1 CT
245095 CGTCCAGCCC
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.11, C:0.38, G:0.11, T:0.41
Consensus pattern (37 bp):
CTTTTTTTTCTCGATCGAGCCGCTCTCCCTCATTCCA
Left flanking sequence: Indices 244519 -- 245018
TGGTGCTCGGGATTCCCATTCAAGAACCAGTAACTCACCGTCTGATTCACGCGGATCAGAGCCAT
CGAGTCGATAATAACTGTTCTTCGGTGCAGCTCTGACCCTACAGCAAGATCACGCCGCCGTTAAC
TAGATAGTTCAGGGGACGAGCCTCTTAATTCGATCTTATTATTTGATTATTAAGCCCGCTTTTGC
GTTGCCGAACTCTTCTTGTATTTGCCATCAGGTGAAGGAAGGAGGAACCCCTTTGCCATAGACCA
ATTACCTGAGATTGGCTAGCATGAGGCGTTCCTCGGAGGTTAACCCTAGTTGATTCTGCACTCCC
TAAAGAGAACAATCCATTCCTTTAGCATAGCTAACGAATAAGGAAAACTGAACTACGGCGCTCAC
CGAATGTATCACTCATCCCGCTCCTAAGGTAAGGAGTCCTCTGTGTGTTATAATCTTTATTGGAA
TTCATTGATAGTTACTTTGCCAGGTTCTAGGGGGGGGCTACTCTT
Right flanking sequence: Indices 245095 -- 245594
CGTCCAGCCCTCTTCACGAACTTGTACAATCGATGCCACAAAAATAGCCAACTCTATTATCAAAG
AAATAAGGAAACGGGCGACGATTTGGCACCAGATATCCGGAGGTGTGGAAAGAGCAGCTGTGAGA
AGCGGAAAAACCATCAAAAAACGACGATTGTTCGTGAAGGTTTCCAAAGAAAGACCCCTTGGTTC
TGGCAAACGGATCACAATTACAGGTACCTGGGAGCATACCGATGGAATGAACGAAATACGAACAG
TTAACATAATATGGTCATAGATCTTAGGTTGTAACTTGATCATGAGCGAATTTGTTGATGTTGCA
CCCACGAAGTATGGAAAGTGCCAAACATTGGGAACGACCCGGGGAGGAGTTAGGAACAGGAACAA
GAAGAAGCGAGAACCACTTAAATGGAGGAATCGATTGTATTTCGTCCTTTGTTCTCCATAGCAAC
TGGGGATCAAAAAGCACCAAATTTGATAACTTATTAAAGGAAAGA
Found at i:256696 original size:31 final size:30
Alignment explanation
Indices: 256661--256726 Score: 107
Period size: 29 Copynumber: 2.2 Consensus size: 30
256651 TTTCTTGTTT
256661 ACTCGAACAGCAAAGGAGAGGTGCTTTAGCA
1 ACTCGAACAGC-AAGGAGAGGTGCTTTAGCA
*
256692 ACTCG-ACTGCAAGGAGAGGTGCTTTAGCA
1 ACTCGAACAGCAAGGAGAGGTGCTTTAGCA
256721 ACTCGA
1 ACTCGA
256727 CTGAAAAGGC
Statistics
Matches: 33, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
29 24 0.73
30 4 0.12
31 5 0.15
ACGTcount: A:0.32, C:0.21, G:0.29, T:0.18
Consensus pattern (30 bp):
ACTCGAACAGCAAGGAGAGGTGCTTTAGCA
Left flanking sequence: Indices 256161 -- 256660
GCCTCAGTTTGGTGATTCACTACCTCCCCAGACGAACCGGAAAAAACATACCATATAATGGGCTC
CAACAGGGGCAAAGCCTGACCACCCAGTAGGTGGATGACTTCGATCCGTAGCAAAGATATTACTA
CGGCGATGAAAAAGACCAAGAAGATCTTGAGAATCCCCCTCAGTGGTCCTTTCAAACGAAAGGAA
GAAATGTGAAATACAAATAGGAAGCCCACCAGTGCGAAGAATGAAACGCACGTAGTGGTCAGAAT
AGCGCTTCCTTCTGATCCTACAAAACGCTGTGCTAATTCCATACGAATTAATACTGAGAAGCATG
TGCCCATCACTCCAGCAATGGCACCGAAAATGAAATAGAGAGTCCCTATATCCTTGTGGTTTGTG
GAGAACAGCCATCGAACCAGATTTTTCATAAATTTGAGATTTTTTCGTTTTTTTCCTTATCAGAG
AGGGGCCCCCTAGGGGGTGTTTAGTAACTCGAGCATTTCTTGTTT
Right flanking sequence: Indices 256727 -- 257226
CTGAAAAGGCGTTCCTCGGAGTGACTCGAGCACTTGTTGCGAGAGGTGCTTTAGCAACTCGACTG
AAAGGAGAGGCCAAGGACGGGGTCGAACCGTCATTCCAGGATTTGCAGTCCGATACATTGCCATT
ATGTTACCTAGCCAAACCCGCCACCTCATGTGCCAAAGTCAAACGGTTGTTCTTTCTTCCCTCTT
TTTGATATATATATGCTGTGGCGGGCGGAGCGGCATAGCGAAAAAAAAGACATCAAGGTGACAGG
ATTCGAACCTATGGCCCTCTGTACCCAAAACAGATGCGCTGACCAGACTGCGCTACACCTCGTCT
CACTCCCCGAAGCATATAGATCCACCCGATCAATGAACACTAACTGAAAGCGGCCGAGAATGAGT
AGATATCCCCTACGGGAATCGAACCCGTGTCTTCGACATGAAAAGACGATGTCCGAACCACTAGA
CGAAAGGGACAAAAAAAAAAAGCCATTCTTCATATACCTCAGCTC
Found at i:256707 original size:29 final size:29
Alignment explanation
Indices: 256673--256729 Score: 114
Period size: 29 Copynumber: 2.0 Consensus size: 29
256663 TCGAACAGCA
256673 AAGGAGAGGTGCTTTAGCAACTCGACTGC
1 AAGGAGAGGTGCTTTAGCAACTCGACTGC
256702 AAGGAGAGGTGCTTTAGCAACTCGACTG
1 AAGGAGAGGTGCTTTAGCAACTCGACTG
256730 AAAAGGCGTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.28, C:0.19, G:0.32, T:0.21
Consensus pattern (29 bp):
AAGGAGAGGTGCTTTAGCAACTCGACTGC
Left flanking sequence: Indices 256173 -- 256672
TGATTCACTACCTCCCCAGACGAACCGGAAAAAACATACCATATAATGGGCTCCAACAGGGGCAA
AGCCTGACCACCCAGTAGGTGGATGACTTCGATCCGTAGCAAAGATATTACTACGGCGATGAAAA
AGACCAAGAAGATCTTGAGAATCCCCCTCAGTGGTCCTTTCAAACGAAAGGAAGAAATGTGAAAT
ACAAATAGGAAGCCCACCAGTGCGAAGAATGAAACGCACGTAGTGGTCAGAATAGCGCTTCCTTC
TGATCCTACAAAACGCTGTGCTAATTCCATACGAATTAATACTGAGAAGCATGTGCCCATCACTC
CAGCAATGGCACCGAAAATGAAATAGAGAGTCCCTATATCCTTGTGGTTTGTGGAGAACAGCCAT
CGAACCAGATTTTTCATAAATTTGAGATTTTTTCGTTTTTTTCCTTATCAGAGAGGGGCCCCCTA
GGGGGTGTTTAGTAACTCGAGCATTTCTTGTTTACTCGAACAGCA
Right flanking sequence: Indices 256730 -- 257229
AAAAGGCGTTCCTCGGAGTGACTCGAGCACTTGTTGCGAGAGGTGCTTTAGCAACTCGACTGAAA
GGAGAGGCCAAGGACGGGGTCGAACCGTCATTCCAGGATTTGCAGTCCGATACATTGCCATTATG
TTACCTAGCCAAACCCGCCACCTCATGTGCCAAAGTCAAACGGTTGTTCTTTCTTCCCTCTTTTT
GATATATATATGCTGTGGCGGGCGGAGCGGCATAGCGAAAAAAAAGACATCAAGGTGACAGGATT
CGAACCTATGGCCCTCTGTACCCAAAACAGATGCGCTGACCAGACTGCGCTACACCTCGTCTCAC
TCCCCGAAGCATATAGATCCACCCGATCAATGAACACTAACTGAAAGCGGCCGAGAATGAGTAGA
TATCCCCTACGGGAATCGAACCCGTGTCTTCGACATGAAAAGACGATGTCCGAACCACTAGACGA
AAGGGACAAAAAAAAAAAGCCATTCTTCATATACCTCAGCTCCGA
Done.