Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_026975
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 107186
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30
Found at i:1159 original size:2 final size:2
Alignment explanation
Indices: 1152--1176 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
1142 TAGTATAGAC
1152 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
1177 TGGCTAATAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Left flanking sequence: Indices 652 -- 1151
GGTGTATAGCTTAATTGGTAGAGCATTAGGCTTTTAACTTAATGGTCGCAGGTTCAAGTCCTGCT
ATACCCAAATGTTTTTATAGAAGTTCCCCAGGCAGTTCATATGCACATCAAAATATACATTGTAC
GTTGACTCGTCTAGTACGATTAATTACGTTAAACTAAAATATATATATATTTTTTATGTCTTTAT
GGCCGCTCACGCCCTTTTTTTTTCTCTGCGAGAAAAGGCCGCGGGCCTCTAATCTAAGCTTAGAG
TGGGTGGAGAGAACGTCGCAGCGTTTGATGCGGCTCTGAAAAGATAGAAGTTAAGTAGGTGTTAC
CAACTACTTAACTATTTAACTTCTCTATATTATACAATCTGCAGCAATCCTGCATTCTGCAATTA
AGGAGTTGTTTGATAGCAACTGTGAATAACAGTATAGATATAGATATTTTCATAAAATAAATAAA
TAGCTTATTTATTATTGGCCAAATACATAATATTTTAGTATAGAC
Right flanking sequence: Indices 1177 -- 1676
TGGCTAATAATGCCGTATTGATTGTTGTTTCATTAAAGCTAATTGCTGTTGGAATAAAGGCTCTA
GTAAACTAGAAGTCTCGATTACATGTGCCGCGTTTTGCGCTTTTCGGACAGCATTGCTGGAGCTG
CCAACATGAAGAGCGGATTCCCGTTATTTTCCCCGTTATTTTCAAAATCCTAAGTAATCTACGTC
ACCGTCAACATTAATTCATGAGATATGCGTCTCTTTCATTAATTATCTAAATTATGCCAACCTAT
CTTATGAAAGCCAGCCCGGCAGTATAATATAATAAATACTGGCTCGCTCGCGTATATTCCCACAT
TCATTCGTCAAATCAGGCAATCTCTATTGAATAAAAGAGAAGATATGATAATAAATTGAATAAGA
AGCTTCCGAGTACGCAAATGGTAGGAATACGCCAGAAGTATTGGCAACCTAGAAATAGGCCGGCA
AAAGGTACAAGAATAGCATGTCGCCACTAGCTGTGTTATGGCATT
Found at i:19240 original size:19 final size:20
Alignment explanation
Indices: 19198--19240 Score: 52
Period size: 19 Copynumber: 2.2 Consensus size: 20
19188 GGATGTTGGT
* *
19198 CATGACTTTCGAAAAGTTCC
1 CATGACTATCGAAAAGTTCA
*
19218 CATGACTAT-GAAAATTTCA
1 CATGACTATCGAAAAGTTCA
19237 CATG
1 CATG
19241 GAGGAGTTTG
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
19 12 0.60
20 8 0.40
ACGTcount: A:0.35, C:0.21, G:0.14, T:0.30
Consensus pattern (20 bp):
CATGACTATCGAAAAGTTCA
Left flanking sequence: Indices 18698 -- 19197
GAGCTAAAAATGCATTTTTTTTCTTTCTTATTTTCATTTTCAATTTTTTTATTTTCAAATTTATG
GGAGACTTGTCATATTTAGAATCTTTCTGTGGTGCGCTTTGTTTTTTATTATTTTGTACTTTTTT
TTTATCATCTAAATATAGGCGCGATACGCGGGCAAACAAGGAGCGTAGGCTTGAAATAGAAAAAA
AGATAAAACCGCGTAAGCGGGCACAGAGAACAAAGCGCCAAGCGCTTTGTTGGCCTGACGAAAAA
AAGAAACAAAGAAATAAAAATAAAGAAAATTTTTACTTTTTAGTTCTTTCAAATAAATCAAAAAT
ATTTTTGATTTATTTGCTGCAATTTTCAAAAACCTTCGGCTTCAACGAAAAAGCAAAAATTTTGA
CTTTTTATTCTCTGCTTGCTTTTTCGCAAGCTTATTCTTCCGTCCCTGAAAATATTTGGAATAGA
TTTTTTATTGTTCGCGCCTTACCAAAAAGACTGATGGATGTTGGT
Right flanking sequence: Indices 19241 -- 19740
GAGGAGTTTGCATCTTTATTATGGGTGTTATTTTGTCGTGCGACCCTGCAGCTTATGCGCGACTA
TCTCGTGTTTAAGCTCACGCCATGTAGGCGTGAACTCTGGTTGAATTCGGGTTCTCAATCCCGCC
GCTGAGATGCTCAGTCGACTCTTGAACCTTGATAGGAAGACGGCTTCTTCCTAAATTAGTGCAAA
AGGTTCAAGGACTTAGGATGAACTTAATGTGAATGGGTATAAGCTTCGCTGCTCAAAAAAACACA
GTATTGACCACACTGAGAGACTTGCCAATGGCAGGAAAGGCCGCGGGTAACGCTAGTTGGCGAAA
TGGCGTTAAGCATTCCTAGCGATACGGAAAGAGAGGTCGTGATGATATCATCTACGTTCGTACTG
TTCTTCGTGGAGTAAATCTCACATCCAAAAATCTAACCAGGGAACGGGATAATTCCCATTAAGTT
CCAGTAAAACTGGCAGGCCAGCCGGGCCGTAAGCTAGTGGGAACA
Found at i:29825 original size:14 final size:14
Alignment explanation
Indices: 29806--29833 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
29796 GCAACAAAAA
29806 TTAGATATATTTGC
1 TTAGATATATTTGC
29820 TTAGATATATTTGC
1 TTAGATATATTTGC
29834 CGTTTTCTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.07, G:0.14, T:0.50
Consensus pattern (14 bp):
TTAGATATATTTGC
Left flanking sequence: Indices 29306 -- 29805
GCACAGAAGAACATAATAATTCCGGAAGTATATACTTTGGATAATTCTAGAAAAAAACCTAGATC
CCACAATAAATGACGAATTCCATTACTCATATGATAGCACAAGGCCAATAAACTGAAATTGACTA
CGCTTGAAATCAACCAATGGAAATAGAAAGTGAAAGAAAAAGCGTACCGGTAAAGATAATAAGAA
GTAAGGTTAAGATCGCCTATTTTCAGAAAAAGAATACTAAAAAAAACCATAATGGATAGAGTCAA
ACTTCGGTAGCAAGTTATGATTAACTCCTGCCTACTAAGTGCTCTCCGAACCGTACGTGATAGTC
TTCCATCATACGGCTCACTAACTCTCCTAATCCAACTCATAGGAGACGGGCTCCATTGACTGCGG
CTCGTTGGGTGCCTGGCCTTCCCGGCTATTGATCGGATTATCAATGGCACTGGATGTATCATCAT
ATATAATGTATTAACATTTTGATGTTAATTAGGGCGCAACAAAAA
Right flanking sequence: Indices 29834 -- 30333
CGTTTTCTTTTTTGAGTTTTGGAGAGTAAAACCTGCCAGACTAGGCAGGTGCATAGACCCCTTCG
CCTTTTACTTAATCTGCAAGTTTCCCGTTTACACGGTTCTTTCAGGATCGGGCAGGTACTATGGG
TCCTCTGACTTCCAACTCGGACCATAGTGTACGGTTGGATCTCGCCGATATCACCTGTGAGCTAT
AGCGCCTGAGATGTCGTTTAGTTCTCTGTCCCCATTAAATTTAAATTAATTTGGGTAATCTGCTT
CCATGCGTAAAAATATATCTATTTTTTTTCGTCCTTACCGTTCTTAGCCGCCAGCGGGCTGAAAG
CATAACAGTGTTCGTTCGTGCGATTCCCCGCGTGCATTTTTTCTGCACTGGTTCGCTGTACTAAC
TACTAACTATAGGGCAGGCTGACCCGAAAAGAACTGCGATTCTGCTTTATCATCTCATGCTAAAT
GAAATATATATATATATATTTCATTTAGCAAGCGCCAGCGGACTC
Found at i:38141 original size:24 final size:24
Alignment explanation
Indices: 38114--38159 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 24
38104 TGCTAATACG
*
38114 AAAAATAAAGAGA-AGACTAAAGA
1 AAAAAAAAAGAGAGAGACTAAAGA
* *
38137 AAAAAAAAATAGAGATACTAAAG
1 AAAAAAAAAGAGAGAGACTAAAG
38160 TGAGCACTTC
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
23 11 0.58
24 8 0.42
ACGTcount: A:0.70, C:0.04, G:0.15, T:0.11
Consensus pattern (24 bp):
AAAAAAAAAGAGAGAGACTAAAGA
Left flanking sequence: Indices 37614 -- 38113
TCAGTGAAATTGAACTCTCCGTGAAGATGCGGAGTACCAACGGCTAGACGGTAAGACCCCGTGCA
CCTTTACTATAGCTTTGCAGTGACAACCTTGATTGAATGTGTAGGATAGGTGGGAGGTGGTGACG
TTGCACGTCACCACCAATCTTGAAATACCACTCTTTCGTCTAAGGATGTCTAACTGCCGAAACAG
AAGCGGGACACTGCATGGTGGTTAGTTTATCTGGGGCGGATGCCTTTATTTAAGTAAGGGGCGCT
TGGATGGTAACATCCCAGGCCAATCTGGCTATATGCTGAAATCTCCATTTCTTGGACAATCAGCA
GGGAAGGCTGAAAAAAGCCACTGCGAAAAATTTATTTGGCTCCCTCAACGACTGCATGCCAGGTA
TCCAATGCAATAATGATTGGATAATGATACAGTCTGAACTTCCAGTAAACTGGAAGCCTAAAGTA
CTGTTCACTACGAAACAGTGATAGGACATTCAAACTGCTAATACG
Right flanking sequence: Indices 38160 -- 38659
TGAGCACTTCAATTGAATCAAATACAACGACAAGTATGTTGCAGAGTGAATGAACATAATTGCCC
AAAGAGTAACGGAGGTGTGCGAAGGTAGGCTCGAGCTAATATTATGACAGCTTTAGAGCGTAATG
GTAGAAGCCTGCCTGACTGTGAGACTTACCAGTCGAACAGAGACGAAAGTCGGCCATAGTGATCC
GGGAGTCCCGTGTGGAAGGGCTCTCGCTCAACGGATCAAAGGTACGCCGGGGATAACAGGCTGAT
GACTCCCAAGAGCTCTTATCGACGGAGTCGTTTGGCACCTCGATGTCGACTCATCACATCCTGGG
GTTGAAGAAGGTCCCAAGGGTTCGGTTGTTCGCCGATGAAAGTGGTACGTGAGTTGGGTTTAGAA
CGTCGTGAGACAGTTCGGTTCCTATCTACCGTTGGTGTTTAAGAGAGAACTGCGAGAAGCCAACC
CTAGTACGAGAGGACTGGGTTGGGTCAACCTATGGTGTACCGGTT
Found at i:38150 original size:25 final size:23
Alignment explanation
Indices: 38114--38159 Score: 56
Period size: 24 Copynumber: 1.9 Consensus size: 23
38104 TGCTAATACG
*
38114 AAAAATAAAGAGAAGACTAAAGAA
1 AAAAAAAAAGAG-AGACTAAAGAA
*
38138 AAAAAAAATAGAGATACTAAAG
1 AAAAAAAA-AGAGAGACTAAAG
38160 TGAGCACTTC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
24 15 0.79
25 4 0.21
ACGTcount: A:0.70, C:0.04, G:0.15, T:0.11
Consensus pattern (23 bp):
AAAAAAAAAGAGAGACTAAAGAA
Left flanking sequence: Indices 37614 -- 38113
TCAGTGAAATTGAACTCTCCGTGAAGATGCGGAGTACCAACGGCTAGACGGTAAGACCCCGTGCA
CCTTTACTATAGCTTTGCAGTGACAACCTTGATTGAATGTGTAGGATAGGTGGGAGGTGGTGACG
TTGCACGTCACCACCAATCTTGAAATACCACTCTTTCGTCTAAGGATGTCTAACTGCCGAAACAG
AAGCGGGACACTGCATGGTGGTTAGTTTATCTGGGGCGGATGCCTTTATTTAAGTAAGGGGCGCT
TGGATGGTAACATCCCAGGCCAATCTGGCTATATGCTGAAATCTCCATTTCTTGGACAATCAGCA
GGGAAGGCTGAAAAAAGCCACTGCGAAAAATTTATTTGGCTCCCTCAACGACTGCATGCCAGGTA
TCCAATGCAATAATGATTGGATAATGATACAGTCTGAACTTCCAGTAAACTGGAAGCCTAAAGTA
CTGTTCACTACGAAACAGTGATAGGACATTCAAACTGCTAATACG
Right flanking sequence: Indices 38160 -- 38659
TGAGCACTTCAATTGAATCAAATACAACGACAAGTATGTTGCAGAGTGAATGAACATAATTGCCC
AAAGAGTAACGGAGGTGTGCGAAGGTAGGCTCGAGCTAATATTATGACAGCTTTAGAGCGTAATG
GTAGAAGCCTGCCTGACTGTGAGACTTACCAGTCGAACAGAGACGAAAGTCGGCCATAGTGATCC
GGGAGTCCCGTGTGGAAGGGCTCTCGCTCAACGGATCAAAGGTACGCCGGGGATAACAGGCTGAT
GACTCCCAAGAGCTCTTATCGACGGAGTCGTTTGGCACCTCGATGTCGACTCATCACATCCTGGG
GTTGAAGAAGGTCCCAAGGGTTCGGTTGTTCGCCGATGAAAGTGGTACGTGAGTTGGGTTTAGAA
CGTCGTGAGACAGTTCGGTTCCTATCTACCGTTGGTGTTTAAGAGAGAACTGCGAGAAGCCAACC
CTAGTACGAGAGGACTGGGTTGGGTCAACCTATGGTGTACCGGTT
Found at i:41856 original size:81 final size:81
Alignment explanation
Indices: 41721--41869 Score: 255
Period size: 81 Copynumber: 1.8 Consensus size: 81
41711 TAAATACTCG
*
41721 CTATCGGATTCGAACCGATAACCCATAGGAACAGATTTTGAGACTGCCGTGTTTACCATTTTCAC
1 CTATCGGATTCGAACCGATAACCCATAGGAACAGATTTTAAGACTGCCGTGTTTACCATTTTCAC
41786 CAAGCGAGTATGCTCA
66 CAAGCGAGTATGCTCA
* *
41802 CTATCGGACTT-GAACCGATAACCCATAGGAACAGATTTTAAGTCTGTCGTGTTTACCATTTTCA
1 CTATCGGA-TTCGAACCGATAACCCATAGGAACAGATTTTAAGACTGCCGTGTTTACCATTTTCA
41866 CCAA
65 CCAA
41870 ATGAGCTTAG
Statistics
Matches: 64, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
81 62 0.97
82 2 0.03
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (81 bp):
CTATCGGATTCGAACCGATAACCCATAGGAACAGATTTTAAGACTGCCGTGTTTACCATTTTCAC
CAAGCGAGTATGCTCA
Left flanking sequence: Indices 41221 -- 41720
CTTCAATCTACTTTAGTCAATCATATGGATATAAAAAAAGCGGCTAATTTAGAAATAACATCAGT
ATTTCAACAACTTTTTGAGCTCATTTTTTACCCATATAATTCTTTATGTTCTTGTTTGAACAAGC
CAATTTGTGCTTCATCCACTATACAAGAAAAGACGCAAGGAGGGTTACTTAGTCACCAGAGGATA
ACCACTTAGTAACTTGGGTCCCCACTTTGCCAATTAAAGCCTGCGGCTTTATCGACAGAACTGGG
GACCCAAGTTTGTAGCGAACCTTTTTTTTTTAATATTTCGGGAAACCCCCCAAAAATATTAAAAA
TATTTTTTGCTGCGAAAAACAGCGTCCTCAAAAATTGTAAAGATTTAAACTAATGGATGATTTGT
TTTTTTGGCGAATAACGGGATTCGAACCCGTGTTTTCAAATTCACAATCTGACACTTTCACCTAT
TAAGTTATACTCGCCCTTTTTCCAATTTAGACATTTAAATACTCG
Right flanking sequence: Indices 41870 -- 42369
ATGAGCTTAGGGAAGCGAAGCGCAGAGTGGAAACACAATCTTTTTGTTTCGTTTTATTTTCGCCA
TTTTATTTTATAGACATCCCCGGCTTATTCCGGCTCGGCTGGACCTGCGGCATTTTCTCAAATAT
TTGAAAAATCTATAGTCCCTTGTCTTAAGGTGTGTAAAGACTCCTTTTTTATTGATTTATACTAG
TCTATCTTAGATCCGAGATAGTGCCGAAAAAATGATTCAATTTCATCTAACCACGGTTGCCTTGG
CAATGGCAATTACTCTTATACGATATGCAGAATACTCCAAAACCTCTATTTATTCTATTTAGAAC
TAAAAGAAGATAACTAAAAGAAGATAATGCTTTTTCATAAAAAAATCATAAAGTGCAAAGATTCA
AATTTTGAGCTTTGTTTTACGTAGTTTTGCCATCTATATAATATAATATAGTAAGAAAGTTGGCG
AGGAATTAAAAAAAATATATATATATATATTTTTTTTTTTATTCT
Found at i:42211 original size:14 final size:14
Alignment explanation
Indices: 42192--42221 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
42182 TTCTATTTAG
42192 AACTAAAAGAAGAT
1 AACTAAAAGAAGAT
42206 AACTAAAAGAAGAT
1 AACTAAAAGAAGAT
42220 AA
1 AA
42222 TGCTTTTTCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.67, C:0.07, G:0.13, T:0.13
Consensus pattern (14 bp):
AACTAAAAGAAGAT
Left flanking sequence: Indices 41692 -- 42191
TTTTTCCAATTTAGACATTTAAATACTCGCTATCGGATTCGAACCGATAACCCATAGGAACAGAT
TTTGAGACTGCCGTGTTTACCATTTTCACCAAGCGAGTATGCTCACTATCGGACTTGAACCGATA
ACCCATAGGAACAGATTTTAAGTCTGTCGTGTTTACCATTTTCACCAAATGAGCTTAGGGAAGCG
AAGCGCAGAGTGGAAACACAATCTTTTTGTTTCGTTTTATTTTCGCCATTTTATTTTATAGACAT
CCCCGGCTTATTCCGGCTCGGCTGGACCTGCGGCATTTTCTCAAATATTTGAAAAATCTATAGTC
CCTTGTCTTAAGGTGTGTAAAGACTCCTTTTTTATTGATTTATACTAGTCTATCTTAGATCCGAG
ATAGTGCCGAAAAAATGATTCAATTTCATCTAACCACGGTTGCCTTGGCAATGGCAATTACTCTT
ATACGATATGCAGAATACTCCAAAACCTCTATTTATTCTATTTAG
Right flanking sequence: Indices 42222 -- 42721
TGCTTTTTCATAAAAAAATCATAAAGTGCAAAGATTCAAATTTTGAGCTTTGTTTTACGTAGTTT
TGCCATCTATATAATATAATATAGTAAGAAAGTTGGCGAGGAATTAAAAAAAATATATATATATA
TATTTTTTTTTTTATTCTGTGGTCCTGCAATTGTACTTAAAGCTAAGGGCCGCAGCCCCCTATTT
CCTATCGTCCTCGTCAATTAAATAAAGGCTTCGTTTGGCCAGGGGGTCATTCTTCCCCCCCGCTG
AATTGCCTCGCGAACAAAAAAATAAATATTTTTTTTCTCCGCCTTATTATTTTTTTATTATTTAA
ATGGCCTCATGAGCTTTTACCAAGCAAAATATTGATTGCATAAGCCATCGGCTTCTACAAAGACC
GATAAAGTGATAACAGCAGCGTAGCCAAGGTTGTTCCGCCCACTGCGCGCAAAAAAATAATTTTT
TTGCGGCACTTAGTAAAACAAAATTTTGACACTCCTTGCAGATGC
Found at i:54928 original size:11 final size:11
Alignment explanation
Indices: 54912--54936 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
54902 AAGGCAGGGG
54912 CGCGCTGCAGC
1 CGCGCTGCAGC
54923 CGCGCTGCAGC
1 CGCGCTGCAGC
54934 CGC
1 CGC
54937 TTCTTTATTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.08, C:0.48, G:0.36, T:0.08
Consensus pattern (11 bp):
CGCGCTGCAGC
Left flanking sequence: Indices 54412 -- 54911
TTACTAGTGTTATCAGTTGTTTTTATTATATACGCTTTGTCAAAATCATTTATTCTGATACACCT
AAAAAATGGATTCTATATAAAACAATGGATCGTGAAAAATCCTTACTACTAGCAATTACTTTATT
CTTCATTACTTTTTTCTCTTTATACCCTTCTCCCCTATTCTTAGTCACCCATCAAATGGCACTAA
GTCTATCTTTCTAAGCCGCTGGCTGCAACGCCGGCGCACCAATGACTCTCCGTACCGTTTCCCAT
CATTTGTTATGCAAATAATGTGGGCACAGCGAATAATGTGGGCGCCAGCCTTCGACCTGTAGCGC
CAAGCCCACCGCACCCACCGCAGCGCGAGGCTGCCCTCCCATCGGCCTGGCATACATTTTAAGCG
GAAAAAGGGACTTGAACCCTCAACCTCAGCCTTGGCAAGGCTATACTCTACCATTAAGCTATTTC
CGCAGCACAATAATAAAAAAGTAACAAGGGTCCGAAAGGCAGGGG
Right flanking sequence: Indices 54937 -- 55436
TTCTTTATTACCAATAAGAAGGGCTGTATTCTCTACAAAAAGTAAGAAGGCTTCTTTATTACCAG
TAAGAAGGGCAGCCTCGCTGCAGCCGCTTCTTTATTATTAGATGTATTATCTTAGTAAACCATGC
TTGGAAAGATTCGAACTCTCAACCCCCAAATCCGTAGTTTGGTGCTCTATCCGATTGAGCTACAA
GCATAAATTTCTTAAGCACTACGTGTCATGTAGGCTGCATTATTACAAAGAAAAAACATATATAT
ATGAAAAAAGAATAGCAGTTCGGGCAGCATTTTATAGAGATTAGTATTACCGTATTGCATTATTT
TAAGTATGCCTTCTGTGACTGCACTGTGTAGTCAACATCCGCAGTTACGTGCATTACTAACGTAA
TTAAGTTCGAATGTTGATTCGATTAGATTAGATTAGATTAGCTTGCGTTTTTACTGCTAAAATAG
ATATATATATATATTTTGTTTTCTCACCTAATTTATCCGAAAAGG
Found at i:85593 original size:22 final size:22
Alignment explanation
Indices: 85565--85608 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
85555 GGCGCTTAGA
*
85565 GGCTGCAAGTGATGAATGTGTG
1 GGCTGCAAATGATGAATGTGTG
* *
85587 GGCTGCAAATTATGCATGTGTG
1 GGCTGCAAATGATGAATGTGTG
85609 AGCGTTAACA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.23, C:0.11, G:0.36, T:0.30
Consensus pattern (22 bp):
GGCTGCAAATGATGAATGTGTG
Left flanking sequence: Indices 85065 -- 85564
TCGTCAAAAATTTACACAGAGCTTCTTAGCAACTCATTAAGTTTAAAAAAATTCAACTAAAAAAA
AATTTTCAGGCCGCTGGTTTTGTTTCCGTGCTTCCGGGTGGAGGGTGAAAGCGGCCAGGGCGCAG
CCAATTTTTTTTTTTTTCGCCCTCTGGCTACGCCCCTAGTAAGGCTTCGTCATACGAGCGGAGCT
CAAACCCCTCCATCCCCACATTAACAACATGTAGATTTGGAGAAAACAGGAACGCAACAAAACAT
TAACAAAATCGGGCCAGGAACGCTTATTTGTAGAATGTACTATTTGTAGGTTCTGTAGGTTTTTA
CTGCGTAGACGATATTATTAGATATTATTTACGTATGGCGTAGCCGGCAAAGATAACTGGGTGAC
CCAGATTAACTATGGCCTTCGCCTCTAATGCATCTGGCTCTAATCTATTAATCTCGCGCTTAGAT
AGATTAATGCATCAGTCTGGCGCTTTTCACTTTCTGGCGCTTAGA
Right flanking sequence: Indices 85609 -- 86108
AGCGTTAACAAAAACAATATATATTACATGGCTCCAGTCGTCTCAAGTCTATTGCTCCGCAACAA
TTTTTAAAATGAATCAATCATCAAAATGATTGATAGCTACCTGCACCAAATTATGGCTGGTGTAA
TCAGGAGAAAAGGGATTCGAACCCTTAACCTGTGGTTTTGGAGACCATTGTTCTACCATTGGAAC
TATTCTCCCAAAAAAAAGTGGTTCTTGGTTTATGGAATTTGCACCTATTTGTGTCTATTTAGTAA
TAAGTTTGCTATTTTCTTTGATCTTAATCGGCGTTTCCTTTCTATTTGCTTCTTCTCCTAATTCG
GCTTATCCAGAGAAATTGTCAGCTTACGAATGCGGTTTTGATCCTTTTGATGATGCCAGAAGTCG
TTTTGATATACGATTTTATCTCGTTTCTATTTTATTTATTATATTTGATTTGGAAGTCACCTTTT
TATTTCCTTGGGCAGTTTCTCTTAACAAGATTGGTTTGTTCGGAT
Done.