Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_065218
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 458897
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.27
Found at i:31270 original size:30 final size:30
Alignment explanation
Indices: 31176--31271 Score: 83
Period size: 30 Copynumber: 3.2 Consensus size: 30
31166 AAGTAATCTC
31176 AAGGAATTATTATCGCTTAGCGCTTGTGCT
1 AAGGAATTATTATCGCTTAGCGCTTGTGCT
* * * **
31206 AAGGTAGT-TTACTTGCTTA---CTTGTTAGAGG
1 AAGGAATTATTA-TCGCTTAGCGCTTG-T-G-CT
31236 AAGGAATTATTATCGCTTAGCGCTTGTGCT
1 AAGGAATTATTATCGCTTAGCGCTTGTGCT
31266 AAGGAA
1 AAGGAA
31272 GAGCTTTTAG
Statistics
Matches: 48, Mismatches: 10, Indels: 16
0.65 0.14 0.22
Matches are distributed among these distances:
27 4 0.08
28 1 0.02
29 4 0.08
30 30 0.62
31 4 0.08
32 1 0.02
33 4 0.08
ACGTcount: A:0.26, C:0.14, G:0.25, T:0.35
Consensus pattern (30 bp):
AAGGAATTATTATCGCTTAGCGCTTGTGCT
Left flanking sequence: Indices 30676 -- 31175
CAATTGTAGTACGAATCGCAGTAATTTGAATCCCTTATATATTAAAAAAAAAAGTGAAAGATGGA
GGTAGGTTTTGCCTACCAAAAGAATGGGAAAGGGAAACGAAACATTCTATTTCAAAACGGAGGAA
AAAGATTCTACTACTTTATCTATCCTACTGCGCTTAATCTTCATTCTTTATTAGAAGAGCAAGAA
AGAAGAAACATTTCTATTCTTTGTTACGTTATTTCAATTTCTTGATTTCTATTTCTTTTACGCAA
TCTTGATTTTGATTCTACGTAATCTCTATTCTACGTTATTTGAGAGGTGAAGCAGGTTCTGTTCT
GAGCCAGAAGTAGTCTCTTAGTTTTCGTATGAATAGATTGGGTCATAGCAAGGTGAACCAAATTG
ATCGAAAACATAGCCCGACCCGCGTATGTTAAGCATATAGCTAATCCTTCTTAACGCTTAGCTAC
TGCGTATAAGCTTCACCCAGCTCTTACAAGAAAGTAAGTAATCTC
Right flanking sequence: Indices 31272 -- 31771
GAGCTTTTAGGGAAAGATTATTGGGCTAGGGTGCTTGAGCAATTTGCCATTCTTCCAATTCAACG
ACTAGGCGTATGCTCAGAACGAGCAAACTGGAGGAAAGCTGGGATTGTGAATGAAAACAACCGTC
AGCTGCCCGAGAGAGCTCATTTCATTCAGGGATTGCCTCAAGAGAGGACTTCAAAGGCTTGGCTT
GAGGTTGCGTCTGCTGCTTGAGATGGAAGGTCTTCCGTAGCTTGGTTGCTTAGCCGTCAATCGTC
GTTCGAGAGGTCAGTAAGGTTTGGGACCTTCTGGCAGCTAAAAGCAAATTTCTTATTAAAGAAAG
ATGGCCGTCTAATAGATTTCCTTCTATCTTGCTGTTGTTCACTGTAAGGTAAGAATAGATTATAC
CGGGTATGAATGTATTAGATTGGGCAGTAAGGGTCGGAGAAGGGCAATCACTCATTCTTAAAACC
AGCGTTCTTAAGACCAAAGAGTCGGGCGGAAAAGGGGGTAAACTC
Found at i:53325 original size:18 final size:18
Alignment explanation
Indices: 53304--53346 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
53294 CAACCTTGTT
53304 GACTATGACAACAG-TCGC
1 GACTATGA-AACAGATCGC
53322 GACTAT-AAACAGACTCGC
1 GACTATGAAACAGA-TCGC
53340 GACTATG
1 GACTATG
53347 GCAGGGCGGT
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
16 5 0.23
17 1 0.05
18 16 0.73
ACGTcount: A:0.35, C:0.26, G:0.21, T:0.19
Consensus pattern (18 bp):
GACTATGAAACAGATCGC
Left flanking sequence: Indices 52804 -- 53303
TACCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTCGGA
GACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTAC
CTTAGGACAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTTCCATTCAAAGCTTATAACACTTCT
CCTTCCGACCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCACTTAGCAGAGT
CCTGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCCTAATCAAAAGATAGGA
GAGCACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCTTCGACATGGTTCTCTCAAG
CGCCCTAGTATACTCTACTTGTTCACCTGTGTCGGTTTGGGGTACGGTCAGTTCACCGGGAGGAT
CGCCCTCCCAATTCGAAGTTTTTTCCTGGAAGTTTCAACCTTGTT
Right flanking sequence: Indices 53347 -- 53846
GCAGGGCGGTACGCTCTGCTCTCTCGCGACCCCTACTCTAATCAAAAGACTAAAGGCCCCTTAGG
TCGCCAAACTACGACGAGAGTTTCGCCTTTTGAAGCGCCAGTCGCATAGGGCGACCGGGCCAGGC
CGAGTCAGAAAGGCTTTGATGACTCAAGGTTCATATTAGGGAAAGGAGAGTGAGGGGAAGAGGGG
GCAGCCCTCGGCCCGATCATCCAATTCGCTCCAACAGATAGGCATGGTTCTGTAGTCAAAGCAAC
TTCGTCACTTTCGTGTACCCATCGGACGGCAGCCCTTTCGGGGGTTCCTTAGGGACCGATTCACT
CTGCGTAGATTGACTGAACGCAGAAAGCCTTCCACTGGCAGGCGATCGTGTTTTTCACAGGATTT
CTCGTTACTCATGTCAGCATTCTCACTTCTGATATCTCCAGGTGTTGTCACCAAAAACCTTCCCC
GATTGACAGAACGTTCCGCTACTGACACTTGAAAAAGAAGCTTTC
Found at i:62847 original size:17 final size:17
Alignment explanation
Indices: 62825--62861 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
62815 GCACAGATTC
62825 CCTATAAAGAAAAATTT
1 CCTATAAAGAAAAATTT
* *
62842 CCTATAAAGACAGATTT
1 CCTATAAAGAAAAATTT
62859 CCT
1 CCT
62862 CTCTTCCCGA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.43, C:0.19, G:0.08, T:0.30
Consensus pattern (17 bp):
CCTATAAAGAAAAATTT
Left flanking sequence: Indices 62325 -- 62824
ACTCCTAGTAGGCCACGAACTCCCTTTCAAGCTTTAACCGACCCGAATCAAATCCAGATGCCTCA
CCAGATAGTTCTCCTTTCATCTGTCCGATCAGGCAGCCAATTCTATGCCACTAAAGCTTCATGCC
ATTGAAGACTGGTCCCGAAAGCGATTAGAAAGCGAACTAGGATCTGCAAGATTCTACTTTGATCC
GCCTATGAACCTTGGTTCACGCTCTACGTATCTTATTCTTTCAAGCTTTCTCGAGTCACCCTAAC
GTAACGGCTAAGAGAACTTGGCTAACTTCGATCAATTCCACGACTTTCCATCCTTCTTGTGTTGT
GGGATGTGAGTCATCAGTTCTTTCCTCCGCCTGATAGTTTATTCTCGAGGATCACTGAACTTGGC
TTACTTCTTACTGAATGCCGTACTTAGCACTCGGGGCGAGCTCTTAGCGATTAGTCAGTCCGGGT
CCAGCTAGTCTTGCACTTTCAGACCCAAACAAAGGGCACAGATTC
Right flanking sequence: Indices 62862 -- 63361
CTCTTCCCGAATGCTTTCCTTAGCTAATACTGATTGATTCACCGCATCTTCTCCATTAGGAGATC
TAACCAAGCACTCGAAATGCGACATTGACTAAAGAAGGTAGACAAAAAGGCAAACTAGAGAAAAA
GCCAAGCTGACTGAATTGAATCTTTCAGTGGAATTGGGGCTTACCTTATATCATATCCTCTCTCT
TTCAAGCACAGTTGAATGAAAAAAGCGTACCTTCGAAGGCATGATTGCTGCGATCAAGAGCTGCT
TAACATCATTGAGAACAGGAGCTCAGAAGATTTGGTGGAGGATAAAAAGTGAACCAACACTGGGA
TCCGATCATAGCCGCAGTGAAGTGTTGGGATGCAAAGACGATGGTTTTTAGATTCGGCAAACATG
AGATGTGTCCCACACTTGAAGAAGTACATCGAATTTTGGAGATATCCCGTAAATTCCTTTTTGTA
CCTAGAGAAGGACGACCGAGAAAAAAAGGCTTCGCGTTCTCCAAG
Found at i:125079 original size:17 final size:17
Alignment explanation
Indices: 125057--125091 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
125047 ATCATCTCTT
125057 TCAAGAAGCCAACTCAA
1 TCAAGAAGCCAACTCAA
125074 TCAAGAAGCCAACTCAA
1 TCAAGAAGCCAACTCAA
125091 T
1 T
125092 AGCTTCTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.46, C:0.29, G:0.11, T:0.14
Consensus pattern (17 bp):
TCAAGAAGCCAACTCAA
Left flanking sequence: Indices 124557 -- 125056
TGCGCTCTCACTAGACTTTTTATTTTATGTCTACGCCGCCTCGATTCACTCAGATTTAATGGTTT
GGTAACCTGCAACATCTTTGGTTCGGCTAGCTTTCATTTTTTTGATCGAAGTCGGTTGTCTTATT
AATCGATTGGAACTCGTAGCTCCAACTATGTATTCCCACTGCCCTGACATGGACAACTTCGCTTT
TACCTAGGTTTATTCACGAAGCATAGGGCATACTTTCTATATAATTTATGCTTTCGTCCAGCCGG
AATCTTAACTGGACGTCTATTGAAAAGGACGGTAAATTGAGAAAAAAAGCATTTCATTAAAAAAA
AGAGTGGATTCTTGAGGTTACATTCCGCTATAGTAGCTTGACCAACGTGAAAGTGGAACAAGTGC
ATGCCCCATACACGAAATTGAATATTAGAGTATAAATCTCATATCGGTATGAGGCTTCCAGTCGA
ATATCTGACTCCGCCTATCACTTTATTCTGCTTCCATCATCTCTT
Right flanking sequence: Indices 125092 -- 125591
AGCTTCTTTTAGAACCGCTATGCCCTCTGCTGCAACTGAGCTAGTTATTGGGAACAGATGGGGAC
TACAAGCGAAGCTTCGCTTGCTTATACCACGTAATTCAACCTCAACAGGAAGGCAAATGGTAAGA
TCCGGGTAAGAGGTTTCGCAGATCTGCTTATTACTGTACCAAACAACAAGACGAAAGCGTCAAAG
GCGAAGCCATGGCGTCACACAATTATCATACAAAATTCTCATTAAGCCACTGTGAGAGAAGGTTG
CTGATCGACGATAATAGGTAGCTTGCAACTATAACATAAAGTGGACGAGCTGACTCAGTGGAGCC
TAAAAATAGCACAAGGTAGTACTAGAAATGATATACAGATGAGATCAAAGGATGGATACACGCAC
GGAGGGAACCAGAACCGGGATAAGCCGCCCTTATTGGGCGCGGTAGAAGCTTACTCTGTAGTTGG
TCTGAAGGAGGTGTTCCACTTCTCACCATCGATTATGATTCGTAT
Found at i:196145 original size:18 final size:18
Alignment explanation
Indices: 196124--196164 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
196114 TTCGGCTTCT
196124 AGCTCAAGT-TCAGTCTCA
1 AGCT-AAGTCTCAGTCTCA
*
196142 AGCTAAGTCTCAGTCTCC
1 AGCTAAGTCTCAGTCTCA
196160 AGCTA
1 AGCTA
196165 GCACGACTCC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 4 0.19
18 17 0.81
ACGTcount: A:0.27, C:0.29, G:0.17, T:0.27
Consensus pattern (18 bp):
AGCTAAGTCTCAGTCTCA
Left flanking sequence: Indices 195624 -- 196123
TTTGTGGACTCGCACGCATAGGTACACCAGAAAAGAAAGAAGGGTTTGAAGTGCAAGAAGGCCTA
GCTGTAAGTACTTCCCTGGTATCCAACAAAAAGTGAACTTTGGTTTCATTCCTTTTGCTCTAAGT
ATACACCTTGACAGCCAGTGATTACGGACAAAGAAGTAGATGCTCAAGCCCGCAATAGAAAGAGT
TTTGGGAGCCCCTGACGGAACGGAATGAAACTTAAGTGGAACCCTCCTTCTTTAGTGCCAACCCG
GGGATCCAATAGAGATGCCCCTGTCAAGTGACTCCAATCGTATCTGAATCTGTTTTAATGACAGA
AGGGTAACCCCAAAGACAAGTAGTTTGCTGTGTTGAACGTAACTATAGGTTCTCTACCTTGAACT
GAATGTCCGATCCCTGCTTCTCGGTCCCCTTCCCTCTCCCTAAACCTCTTCCTTTACTCTTGCGG
TTAGAAAGCGGGAAAAAAGAACTGTTGGTAAGCGGTTCGGCTTCT
Right flanking sequence: Indices 196165 -- 196664
GCACGACTCCTGGCATCGCTTTTCCAGTAAGAATAAGTCCTAGGCTGAAAGATTGGAATTGAGCT
ACCCAACTTACTGAATACAACTATGGACCTGAAACGCTGTCTTTCAACTACTGGTGGTAAGGCAA
TCTAACCTTATTTTACTATTAGTCCGGTCGATACAGGAGATCCATAAGATCCACACACAAAAGGG
ACTTGGAGTGGATTCCTCTCTTCTTCCTTCCGTACTTGTACTATACTTGACTTATTTTATACTAG
TAAACTATCATCACAAGCCAAACTAGCAACAACTAGATAGGGTACACGCTCAGTCACTATATCTT
GAAATCCTATTTCGGTGAACTCTGTCATTGTGGGATATTCGGATTCCCAACTTGCCAGTGAACCA
CCAGAAAAGTCATTAAGTCCCGAAACCCGCCATTACTCAACTCTCCTTCTTGGAAATACCCTTCA
ATTTGACCGGGAAGCCGGCCTCTTGCAATAGTTGGTCCAGTCTCC
Found at i:197644 original size:13 final size:13
Alignment explanation
Indices: 197626--197651 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
197616 AACAATCAAT
197626 CTCAGAAACATGA
1 CTCAGAAACATGA
197639 CTCAGAAACATGA
1 CTCAGAAACATGA
197652 GTCCTCGTCC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.23, G:0.15, T:0.15
Consensus pattern (13 bp):
CTCAGAAACATGA
Left flanking sequence: Indices 197126 -- 197625
ATCAGTGTTGCGATATCTGTCTGAAATAGTTAGATTCCCTGTTATCAGTGTCTTGATGTCAAACA
GCTAGTGGAAGCGCTTGAAACACCAACTGGTGTCAGTATGGATTCGTAAGGCTGCGATCCTAAAT
CAGTGGATGTTCCTCTCTTTCCTAGGAGTATAAGAATCAAATGGGTCTAAACCCGGTCAAGGAAA
CCGGTGTGCTTGTTATTTGCTTAACACATGGATTTCGAATGCCCTTAGGTTTTTAGGGTTAGGGG
TGGAAAATGAGAGCAGGCAGACAGCGCCCTTGCTACTGGCATTCAAAAGACGGAGGATTCTCGTG
CAAACTATTGTATGCAAAGAGTGAGATTCATGGTTCTTGTTCTTACTGATTTATATAGATGAGGC
AGCTGCACCTGCTTATTCTAGATCTACTAAAGCAGGTAATTATAGTAATAAAGAGGAACTGCCAG
CTCAGAAGCAGCAGGAGAAGCTACTTTCGATACCTAACAATCAAT
Right flanking sequence: Indices 197652 -- 198151
GTCCTCGTCCTAAAGAAACGGAGAATTTGCTTAAACGAAGAATGCTCAGAAATCCTCGTACTGAT
TCACATACAGAAGAGAATGGTATAGAATCTCTGTCTTCCAAGAGTTCGATTCCATAGCTGCCTTC
ACTAGTTCCATTCCCGGTCTAGGAATTCTTTCTCTTTCTTCGAGTTAGCAGTTCGTAGCTCTTTA
CTCTCGAATTAGACATCAATGAAAACAAGAAACCTGGATTGGATCTTGACTGAAATCGCTTTCCT
TAGCTACAAGAGGAAAGAGAGGTGGAATTCACATCTTTTTTATATAATGTAGAAAAAAAACCTAG
TGCAAAAGCAAGAAAAGGGCATTTGAAGTGATTATAGTAGAAGAGGGCTAGTGTGTAGAATTATA
GGTGTGGTTGGTCTAGGTGGCAAAACAAGGTAGCTGTAGTGACTCCTAGAGAATTACAAAGAAGT
TCTCTTCTCCTTTCGTTCTCTTCTTTCTTTTTTTGGTTGGCAGGG
Found at i:206384 original size:13 final size:13
Alignment explanation
Indices: 206366--206391 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
206356 CCCCGCCCTA
206366 TAGAATGAATAAG
1 TAGAATGAATAAG
206379 TAGAATGAATAAG
1 TAGAATGAATAAG
206392 GAGAGGCCTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.00, G:0.23, T:0.23
Consensus pattern (13 bp):
TAGAATGAATAAG
Left flanking sequence: Indices 205866 -- 206365
TGTCCAGCGGTGTTGTCCACCAGAACATCGATGTGCGGAAGAGAAAAAGAATCTTTTCGGCTTGC
CTTGTTTAGGGTCTTTTGACTCACGGAACCTGCTTTATGAGGGAAAAACCGTTCTCGAAAAGCGT
GACCATCCCGTTGAATCTCGTTACCCTCCCGTGTGGTTATGGGGGCGCGCCCGCTTTCCACTATT
ATGGAGCCGGGCCGCAAGCAAGTGAATGCGATCCCGCCCTCCATCAGCCGGTGTGTGTGAGCTTC
GCTCCTTATAGCTCTACACCGCCGCCGGCCACTTTAGCTCCTCTACCATATGATTCATTCTTTGG
AAGTTAGGCACGTGACTCGATAGCGCAGGCACAAGACCTTTGAATGCAAACAAAGAATGGCGAGA
CCGCATATAGTTTGGAACCCAAGCTTACCTTATTATTATTCAAAGGGGAAGGTTTGATAAAGGAG
CTTTTAAGCCCTTTTGCTGAATTGTTGGTCCGCAGCCCCGCCCTA
Right flanking sequence: Indices 206392 -- 206891
GAGAGGCCTGTTGATGACCGAGCCACTCTTATACTACTCCTTACCTCACCCCCCCCCTTGTCACT
TAAAGGGCGAAGTCGCTGAAGCGAGTCTAAAGGCCAAAGAGTGATCTTTGAACGCTACTACGCAT
CCTTACTAATAGTATAGTGTAAGGTAGGTTTGGGTATAGCAGGACTTGAACCTGCGACCATTAGG
TTAAAAGCCCAATGCTCTACCAACTGAGCTATACACCCCCAAAATATATAGTAAAAAATAAGGAT
TGGTGCGGAAAAAAAAGGGGGCAGCCGCGGTCGAACTCTAATTCTGGAAAAAAGTCGGGGCCCCT
TTTCCAAGTCTACCAGATAGAAGATGATAGAGGGCCATATCGTTGCGTTGGACAAGACGGCGCCG
TCTCACTTCGAGTTCCTTCCTTCGTAGTAAAATCAGATGATACGCTTCGGCGATGTTACCTACCA
AATTTAAGGCCTGCTAGGTGATCGAAATTGCTCAGGTCAGTGAGG
Found at i:222763 original size:18 final size:18
Alignment explanation
Indices: 222742--222778 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
222732 AATAGAATTA
*
222742 CAACTCGAAAAGGAAAAG
1 CAACTAGAAAAGGAAAAG
222760 CAACTAGAAAAGGAAAAG
1 CAACTAGAAAAGGAAAAG
222778 C
1 C
222779 TATTAAAACT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.57, C:0.16, G:0.22, T:0.05
Consensus pattern (18 bp):
CAACTAGAAAAGGAAAAG
Left flanking sequence: Indices 222242 -- 222741
CTGTCTCAACCCTGACTGACGACTAGCTTTACTTGATAGAGTTGCCTTCCATGCCCGGTTAAGTT
CGCCCTTAGGGGAAAAAGCCTTTCCTTGCCTTACCGGACAGTAAGAATTTAATTGCCTTGAAAAC
AAAACAGAAGTACTACTTTGGATACGCTATGATTCGCATCTCTCATTAAACTTTTATAATACAAT
CTATGTCCTACTCTTTTAGTTTTAGCTTTCTTCATTGAGTAAAAGGAAATTAGCCTTTCAAACAG
AAGGCATATGATAGCTCATTCCCGGACTTATTTATATCGTAAGAGAGAGAGAGAACCTCCTATGC
CCAAAGACTCCCATGCTTTCCGTTGGTCAACAACCAACCACAACTCACTATAATTCTTCACTACT
CGTACAGGAAGGTAAGAAAAACTTGCTTTTCTGGAGGGAATCAAAATGACGTAAATCCCAATTTT
ATGACCCAGGAACAGATTTTGCTATTACAAGTAGAAATAGAATTA
Right flanking sequence: Indices 222779 -- 223278
TATTAAAACTAGAAAAGCTATTAAAATTACAACTAGAAAAGGAATTAAAAGTAGAAATAGAATTA
CAACTCGAAAAGGAAAAGCTATTAAAATTACAAGTAGAAAAGGAAAAGCTATTAAAATCGCTTGA
GTCGCTGCCTTGTGAAAGAAAACATCATATGTAAGTAAGTAGCATCTCGAATAGAAATATCCCTT
CCAAATATCTAATATAAAGTTAGATTTCTATTCAAAAATAATAAATAGAAATTGCGTAGCGTAAG
AGAAGAAAATGCCCAAAAGTCCCATGTTTTTCTTGGTTGGAAAAGCCCAACCGGCGACTTCCGTC
TTCCTGAATTGGGAGAGCAAGAACAAGTCTCTCTTCTTTTTTTTGGGGGGGGCGGAGCAGTTAAA
GAATGAACCAACCCAAATGATTGTTCTAGAATGGCTATTCCTCACAATTGTTCCTTGTGATGCAG
CGGAACCATGGCAATTAGGATTTCAAGACGCAGCAACACCTATGA
Found at i:222807 original size:24 final size:24
Alignment explanation
Indices: 222780--222828 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 24
222770 AGGAAAAGCT
*
222780 ATTAAAACTAGAAAAGCTATTAAA
1 ATTAAAACTAGAAAAGCAATTAAA
* *
222804 ATTACAACTAGAAAAGGAATTAAA
1 ATTAAAACTAGAAAAGCAATTAAA
222828 A
1 A
222829 GTAGAAATAG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.59, C:0.08, G:0.10, T:0.22
Consensus pattern (24 bp):
ATTAAAACTAGAAAAGCAATTAAA
Left flanking sequence: Indices 222280 -- 222779
GAGTTGCCTTCCATGCCCGGTTAAGTTCGCCCTTAGGGGAAAAAGCCTTTCCTTGCCTTACCGGA
CAGTAAGAATTTAATTGCCTTGAAAACAAAACAGAAGTACTACTTTGGATACGCTATGATTCGCA
TCTCTCATTAAACTTTTATAATACAATCTATGTCCTACTCTTTTAGTTTTAGCTTTCTTCATTGA
GTAAAAGGAAATTAGCCTTTCAAACAGAAGGCATATGATAGCTCATTCCCGGACTTATTTATATC
GTAAGAGAGAGAGAGAACCTCCTATGCCCAAAGACTCCCATGCTTTCCGTTGGTCAACAACCAAC
CACAACTCACTATAATTCTTCACTACTCGTACAGGAAGGTAAGAAAAACTTGCTTTTCTGGAGGG
AATCAAAATGACGTAAATCCCAATTTTATGACCCAGGAACAGATTTTGCTATTACAAGTAGAAAT
AGAATTACAACTCGAAAAGGAAAAGCAACTAGAAAAGGAAAAGCT
Right flanking sequence: Indices 222829 -- 223328
GTAGAAATAGAATTACAACTCGAAAAGGAAAAGCTATTAAAATTACAAGTAGAAAAGGAAAAGCT
ATTAAAATCGCTTGAGTCGCTGCCTTGTGAAAGAAAACATCATATGTAAGTAAGTAGCATCTCGA
ATAGAAATATCCCTTCCAAATATCTAATATAAAGTTAGATTTCTATTCAAAAATAATAAATAGAA
ATTGCGTAGCGTAAGAGAAGAAAATGCCCAAAAGTCCCATGTTTTTCTTGGTTGGAAAAGCCCAA
CCGGCGACTTCCGTCTTCCTGAATTGGGAGAGCAAGAACAAGTCTCTCTTCTTTTTTTTGGGGGG
GGCGGAGCAGTTAAAGAATGAACCAACCCAAATGATTGTTCTAGAATGGCTATTCCTCACAATTG
TTCCTTGTGATGCAGCGGAACCATGGCAATTAGGATTTCAAGACGCAGCAACACCTATGATGCAA
GGAATAATGGACTTACATCACGATATCTTTTTCTTCCTCATTCTG
Found at i:222833 original size:18 final size:18
Alignment explanation
Indices: 222803--222858 Score: 60
Period size: 18 Copynumber: 3.1 Consensus size: 18
222793 AAGCTATTAA
*
222803 AATTACAACTAGAAAAGG
1 AATTAAAACTAGAAAAGG
*
222821 AATTAAAAGTAGAAATA-G
1 AATTAAAACTAGAAA-AGG
* *
222839 AATTACAACTCGAAAAGG
1 AATTAAAACTAGAAAAGG
222857 AA
1 AA
222859 AAGCTATTAA
Statistics
Matches: 31, Mismatches: 5, Indels: 4
0.77 0.12 0.10
Matches are distributed among these distances:
17 1 0.03
18 29 0.94
19 1 0.03
ACGTcount: A:0.57, C:0.09, G:0.16, T:0.18
Consensus pattern (18 bp):
AATTAAAACTAGAAAAGG
Left flanking sequence: Indices 222303 -- 222802
AGTTCGCCCTTAGGGGAAAAAGCCTTTCCTTGCCTTACCGGACAGTAAGAATTTAATTGCCTTGA
AAACAAAACAGAAGTACTACTTTGGATACGCTATGATTCGCATCTCTCATTAAACTTTTATAATA
CAATCTATGTCCTACTCTTTTAGTTTTAGCTTTCTTCATTGAGTAAAAGGAAATTAGCCTTTCAA
ACAGAAGGCATATGATAGCTCATTCCCGGACTTATTTATATCGTAAGAGAGAGAGAGAACCTCCT
ATGCCCAAAGACTCCCATGCTTTCCGTTGGTCAACAACCAACCACAACTCACTATAATTCTTCAC
TACTCGTACAGGAAGGTAAGAAAAACTTGCTTTTCTGGAGGGAATCAAAATGACGTAAATCCCAA
TTTTATGACCCAGGAACAGATTTTGCTATTACAAGTAGAAATAGAATTACAACTCGAAAAGGAAA
AGCAACTAGAAAAGGAAAAGCTATTAAAACTAGAAAAGCTATTAA
Right flanking sequence: Indices 222859 -- 223358
AAGCTATTAAAATTACAAGTAGAAAAGGAAAAGCTATTAAAATCGCTTGAGTCGCTGCCTTGTGA
AAGAAAACATCATATGTAAGTAAGTAGCATCTCGAATAGAAATATCCCTTCCAAATATCTAATAT
AAAGTTAGATTTCTATTCAAAAATAATAAATAGAAATTGCGTAGCGTAAGAGAAGAAAATGCCCA
AAAGTCCCATGTTTTTCTTGGTTGGAAAAGCCCAACCGGCGACTTCCGTCTTCCTGAATTGGGAG
AGCAAGAACAAGTCTCTCTTCTTTTTTTTGGGGGGGGCGGAGCAGTTAAAGAATGAACCAACCCA
AATGATTGTTCTAGAATGGCTATTCCTCACAATTGTTCCTTGTGATGCAGCGGAACCATGGCAAT
TAGGATTTCAAGACGCAGCAACACCTATGATGCAAGGAATAATGGACTTACATCACGATATCTTT
TTCTTCCTCATTCTGATTTTGGTTTTCGTATCACGGATCTTGGTT
Found at i:222839 original size:24 final size:24
Alignment explanation
Indices: 222788--222840 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 24
222778 CTATTAAAAC
* * *
222788 TAGAAAAGCTATTAAAATTACAAC
1 TAGAAAAGCAATTAAAAGTACAAA
* *
222812 TAGAAAAGGAATTAAAAGTAGAAA
1 TAGAAAAGCAATTAAAAGTACAAA
222836 TAGAA
1 TAGAA
222841 TTACAACTCG
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.58, C:0.06, G:0.15, T:0.21
Consensus pattern (24 bp):
TAGAAAAGCAATTAAAAGTACAAA
Left flanking sequence: Indices 222288 -- 222787
TTCCATGCCCGGTTAAGTTCGCCCTTAGGGGAAAAAGCCTTTCCTTGCCTTACCGGACAGTAAGA
ATTTAATTGCCTTGAAAACAAAACAGAAGTACTACTTTGGATACGCTATGATTCGCATCTCTCAT
TAAACTTTTATAATACAATCTATGTCCTACTCTTTTAGTTTTAGCTTTCTTCATTGAGTAAAAGG
AAATTAGCCTTTCAAACAGAAGGCATATGATAGCTCATTCCCGGACTTATTTATATCGTAAGAGA
GAGAGAGAACCTCCTATGCCCAAAGACTCCCATGCTTTCCGTTGGTCAACAACCAACCACAACTC
ACTATAATTCTTCACTACTCGTACAGGAAGGTAAGAAAAACTTGCTTTTCTGGAGGGAATCAAAA
TGACGTAAATCCCAATTTTATGACCCAGGAACAGATTTTGCTATTACAAGTAGAAATAGAATTAC
AACTCGAAAAGGAAAAGCAACTAGAAAAGGAAAAGCTATTAAAAC
Right flanking sequence: Indices 222841 -- 223340
TTACAACTCGAAAAGGAAAAGCTATTAAAATTACAAGTAGAAAAGGAAAAGCTATTAAAATCGCT
TGAGTCGCTGCCTTGTGAAAGAAAACATCATATGTAAGTAAGTAGCATCTCGAATAGAAATATCC
CTTCCAAATATCTAATATAAAGTTAGATTTCTATTCAAAAATAATAAATAGAAATTGCGTAGCGT
AAGAGAAGAAAATGCCCAAAAGTCCCATGTTTTTCTTGGTTGGAAAAGCCCAACCGGCGACTTCC
GTCTTCCTGAATTGGGAGAGCAAGAACAAGTCTCTCTTCTTTTTTTTGGGGGGGGCGGAGCAGTT
AAAGAATGAACCAACCCAAATGATTGTTCTAGAATGGCTATTCCTCACAATTGTTCCTTGTGATG
CAGCGGAACCATGGCAATTAGGATTTCAAGACGCAGCAACACCTATGATGCAAGGAATAATGGAC
TTACATCACGATATCTTTTTCTTCCTCATTCTGATTTTGGTTTTC
Found at i:222873 original size:30 final size:30
Alignment explanation
Indices: 222790--222901 Score: 118
Period size: 30 Copynumber: 3.5 Consensus size: 30
222780 ATTAAAACTA
222790 GAAAAGCTATTAAAATTACAACTAGAAAAG
1 GAAAAGCTATTAAAATTACAACTAGAAAAG
* * *
222820 GAATTAAAAG-TAGAAATAGAATTACAACTCGAAAAG
1 G----AAAAGCT---ATTAAAATTACAACTAGAAAAG
*
222856 GAAAAGCTATTAAAATTACAAGTAGAAAAG
1 GAAAAGCTATTAAAATTACAACTAGAAAAG
222886 GAAAAGCTATTAAAAT
1 GAAAAGCTATTAAAAT
222902 CGCTTGAGTC
Statistics
Matches: 67, Mismatches: 7, Indels: 16
0.74 0.08 0.18
Matches are distributed among these distances:
30 35 0.52
32 5 0.07
33 2 0.03
34 5 0.07
36 20 0.30
ACGTcount: A:0.56, C:0.08, G:0.15, T:0.21
Consensus pattern (30 bp):
GAAAAGCTATTAAAATTACAACTAGAAAAG
Left flanking sequence: Indices 222290 -- 222789
CCATGCCCGGTTAAGTTCGCCCTTAGGGGAAAAAGCCTTTCCTTGCCTTACCGGACAGTAAGAAT
TTAATTGCCTTGAAAACAAAACAGAAGTACTACTTTGGATACGCTATGATTCGCATCTCTCATTA
AACTTTTATAATACAATCTATGTCCTACTCTTTTAGTTTTAGCTTTCTTCATTGAGTAAAAGGAA
ATTAGCCTTTCAAACAGAAGGCATATGATAGCTCATTCCCGGACTTATTTATATCGTAAGAGAGA
GAGAGAACCTCCTATGCCCAAAGACTCCCATGCTTTCCGTTGGTCAACAACCAACCACAACTCAC
TATAATTCTTCACTACTCGTACAGGAAGGTAAGAAAAACTTGCTTTTCTGGAGGGAATCAAAATG
ACGTAAATCCCAATTTTATGACCCAGGAACAGATTTTGCTATTACAAGTAGAAATAGAATTACAA
CTCGAAAAGGAAAAGCAACTAGAAAAGGAAAAGCTATTAAAACTA
Right flanking sequence: Indices 222902 -- 223401
CGCTTGAGTCGCTGCCTTGTGAAAGAAAACATCATATGTAAGTAAGTAGCATCTCGAATAGAAAT
ATCCCTTCCAAATATCTAATATAAAGTTAGATTTCTATTCAAAAATAATAAATAGAAATTGCGTA
GCGTAAGAGAAGAAAATGCCCAAAAGTCCCATGTTTTTCTTGGTTGGAAAAGCCCAACCGGCGAC
TTCCGTCTTCCTGAATTGGGAGAGCAAGAACAAGTCTCTCTTCTTTTTTTTGGGGGGGGCGGAGC
AGTTAAAGAATGAACCAACCCAAATGATTGTTCTAGAATGGCTATTCCTCACAATTGTTCCTTGT
GATGCAGCGGAACCATGGCAATTAGGATTTCAAGACGCAGCAACACCTATGATGCAAGGAATAAT
GGACTTACATCACGATATCTTTTTCTTCCTCATTCTGATTTTGGTTTTCGTATCACGGATCTTGG
TTCGCGCTTTATGGCATTTCCACTATAAAAAAAATCCAATCCCGC
Found at i:228050 original size:21 final size:20
Alignment explanation
Indices: 228016--228057 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
228006 ATGAGGTTAC
*
228016 GAAGTAAACGAAGTGAGGTG
1 GAAGTAAACGAAGTGAAGTG
*
228036 GAAGTGAAGCGAAGTGAAGTG
1 GAAGT-AAACGAAGTGAAGTG
228057 G
1 G
228058 GCAATCTTTG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 5 0.26
21 14 0.74
ACGTcount: A:0.38, C:0.05, G:0.43, T:0.14
Consensus pattern (20 bp):
GAAGTAAACGAAGTGAAGTG
Left flanking sequence: Indices 227516 -- 228015
CATCTGAATGGACGCTTTCTGGTAATAGAAACCCCATTTCGGCCCCTTCTCCCGTTGGGCACTAC
CTCCGATGGGAAAAGATACCCGTAGGACCATTCCGGCAGTTTTTCAAGCCTCCCCTCACGCCTTT
GGCGCCTCTGATGCATCTGATCGAGACAGAGCTCGAAACGTCTGGGCTTCGGATTGATCTTAATC
ACATTGGGATGGTACGGGGGAACAAGATGGACTCGGTTAGGTCACCCCCGAGTCCTTTTGCTGGA
AGTTCGAATGGCTTCTAGTATGGATGTGTCTCGGCTTCGCCTGACGCTCAAGATCGTCTCAATCC
CCTCTCCCTAATGGTATGGTCGAGCAATCTCCCGCTGGTTGAGTGCGAAACCCTCCGCTTGCGGA
GATCGAAGGCAGGATTATGAACTGTTTTCCAAGCTTTGGGTTAGGATTGTTCTCTCGAGACCATA
GTGGGAATTCCTTAACAACAACATTTTGTGTAAACATGAGGTTAC
Right flanking sequence: Indices 228058 -- 228557
GCAATCTTTGCCACTGTTGACTTGAACCAGCGTCCAGATATGGAGGGTTGGCTTAGCGGCAAACC
CTGTTTGGAAAACAAAAGCCAAACAGGGGCATCCTACCTTTCGTCGCCCTTACGGACCCTACATC
TGTGAAATGACGGAATGATACGAGGGATCCCCGGACGAGTCAGGGAGACGGGGACTGGCAAGAGG
GATGGTTTGTAATCATCCCCTCCCACGGCAAGCATGACGAGGAGCACCACTTTCAATACAAAGCA
GTGGCCGAGGCGCCACTCTTTCGTTTCAGTCGCGTTGACAACAAAGGGGTGTGCGGCCGTGTTCC
GTCAAGCCATCGAGATGAGTGTGCCTCTTTGACAGAGTCCCCTTATCTTGCGTAGTAATTCCGGA
ATCTCCTGCCACCGAAGTGAGTCAGAGGAAGGTTCCGCTCCTTCATTCTTTTTTTTTTATTGATT
GCACAAGATCTGCTTCGCAGCCTAACGGTTGTATTCACGAGGCTG
Found at i:265322 original size:13 final size:14
Alignment explanation
Indices: 265289--265322 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
265279 CAGAAGCTAG
*
265289 AGGACAGTATTCGT
1 AGGACGGTATTCGT
265303 AGGACGGTATTCGT
1 AGGACGGTATTCGT
265317 -GGACGG
1 AGGACGG
265323 ATGAGCGATT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 6 0.32
14 13 0.68
ACGTcount: A:0.24, C:0.15, G:0.38, T:0.24
Consensus pattern (14 bp):
AGGACGGTATTCGT
Left flanking sequence: Indices 264789 -- 265288
TAGATACGTGATAACACTTGTGGTTTCGGCGAATCGCCTTCACTCTCGGGGTTCAGTACCCGCCT
CTTGGTGTCCAATACCCAGTGATGGGAGAAGGAGTGGGAGACGAAGAGAGAGAAGATGGTTGCTT
AGCAGCGGAAGCTGGGGATCGAGAAGCGGAGGGAGAGCTTAGGCTTGAAATGGAGCTGGGATACC
GGTATTTTTCCCTCCCTGGATCCGAGTCTTTCTCTTCTCCTGGACCGAGCACCGAGACCGAGGAA
AGAGAGGCTGGATACGAGTCTGATGAGATCAGAGCCAGTGAAGAGAAGAGGGAAGGCTTACTCTG
CTAGGCTGGCTTGCTTGTTCGACTAGAGCACATAAATAAGGTAGCTTGCTTACTTAGTGCGAAAC
GCTAAGGCCAATTAAGCAACGTTAATGGACCGCTCCCCATTACAGACGCTTTCACAGGGCTTCTT
TTTAGATAAAATAGGCCATAGAAATTCACTCATAACAGAAGCTAG
Right flanking sequence: Indices 265323 -- 265822
ATGAGCGATTGGACCGCCTATAGGACAGTTACTGGACAGATGCGACCGTTACCAGTTGACAGATG
ACAGGCAGAAGAGCGGGAAGTCGCTCTATTTAAAGGACGGGAATTGCACATTAAAGGAAGGGAAT
CGTGTACTGAGCTAGCCTGCCTTGAACTTGAAGTAGGTAGTCTCTCCTATATCTGATAGCTTTAA
CTGGCCACTACAAAGAAATTGCCATAGATCGAAACTTATTCCAGGCTTAGTATCCCCGGATAGAC
CCTATAAAAGAAGACGAGTCATAAAGGCAAATATCTAACAATTTCAGGGGGGCACATCCTAACTG
AATAGTACTCGCAGGTTCTCTTTTCCATATGTTCTTCCCGATGCCCTATCCGACAGCCGTTAACT
GCCTTGCAGGGAATTCCTTACTCAAAAGTATGAGAGTGCGGCATAGCAAGAGTGAATCCTCCCAC
CTCCCTCTAACGCTTATCTCTTTTCTTGCTTCCTTGCTTTAATCC
Found at i:285911 original size:8 final size:8
Alignment explanation
Indices: 285898--285937 Score: 53
Period size: 8 Copynumber: 4.6 Consensus size: 8
285888 AAATAATAGA
285898 TATATAAT
1 TATATAAT
285906 TATATAAT
1 TATATAAT
285914 AGATATATAAT
1 ---TATATAAT
285925 TATATAAT
1 TATATAAT
285933 TATAT
1 TATAT
285938 CTATAAACTA
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
8 21 0.72
11 8 0.28
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (8 bp):
TATATAAT
Left flanking sequence: Indices 285398 -- 285897
CAGCCTTAACCTGTCCTCAGACAGCCAGCCCTCACCAGGCTGCTGGAATTGCTAAATGCTCCGCC
ACGAAGCAAGCTCTCCCGATCCCGAAGACGACAGATGCGGAAGTGGCTAAAGAAGTCGGAGGAAG
AAAGTTGTTGGGCAATTGTATGCGCGAGGGTACATTATAAGTATTCTGAGAATTGGCAACATTGA
CAGAAAGGGGAAGAAAAGGGGGTAGGAATAAACTTTTTTAGGTGTAGCTATACTAAAGTAAGTAG
TCGGCCTAACCTTCGGTTACCGTAACCAAGTTTTTCTTTCTCACTCCTTATGTTATGTACTTTTT
CTTACTTAATCCATACTTTTTTACCTTTTCTGAAGTGTGGGGCAAAGGGTGCCCTCTACTTATAC
TTCTAACTAAAGGCGAACTGCAGGCATTGCAAGCAAACAAAGCGCCCCCGCCCGTTTGAGTCGCG
AAGGGGCCGCTTGCTTAAAAAATTTATTTTATATAAAATAATAGA
Right flanking sequence: Indices 285938 -- 286437
CTATAAACTAAGAAAATCCGTTTTTTTTATCCAATTGTTCATTCCCGGGAAGAGGAAGAAGCAGA
TAGAGCAAAGGCCTCCTCTTTCCTTCCGTCCGCTCTTCCCGAAGTGGGCGAATTGCATGTAGAGA
TCCGCAGGGGCTTATAGTTTAATTGGTTGAAACGTACCGCTCATAACGGTTATATTGTAGGTTCG
AGCCCTACTAAGCCTACCACCCCCTTCTCTGCACCCGATACAAGGCAGTCGAAGTCCTCGCCACC
CTGCAGATCTCAATCTAGCGACGGCACCTGGAACCGCACAGCTTCCGCTGCCCTTCGGGCACGCC
TCCTACGCTCTTGCGGCATGCCCCCTTCGGGCAATACGGCTTTCGTGAGTAATACGCGAAGCAGC
TGAGCGATAGCTCTCTTCGATCGCTATATTCTTGCGATAGCGAAGGCGTAGTTCATCCTCTAAGA
GAGAGTAGATGCGAAGATTCGGATCGAAGATCTTCGCTTGGGCCG
Found at i:285914 original size:19 final size:19
Alignment explanation
Indices: 285890--285932 Score: 86
Period size: 19 Copynumber: 2.3 Consensus size: 19
285880 TTTATATAAA
285890 ATAATAGATATATAATTAT
1 ATAATAGATATATAATTAT
285909 ATAATAGATATATAATTAT
1 ATAATAGATATATAATTAT
285928 ATAAT
1 ATAAT
285933 TATATCTATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.53, C:0.00, G:0.05, T:0.42
Consensus pattern (19 bp):
ATAATAGATATATAATTAT
Left flanking sequence: Indices 285390 -- 285889
AGCAGGCCCAGCCTTAACCTGTCCTCAGACAGCCAGCCCTCACCAGGCTGCTGGAATTGCTAAAT
GCTCCGCCACGAAGCAAGCTCTCCCGATCCCGAAGACGACAGATGCGGAAGTGGCTAAAGAAGTC
GGAGGAAGAAAGTTGTTGGGCAATTGTATGCGCGAGGGTACATTATAAGTATTCTGAGAATTGGC
AACATTGACAGAAAGGGGAAGAAAAGGGGGTAGGAATAAACTTTTTTAGGTGTAGCTATACTAAA
GTAAGTAGTCGGCCTAACCTTCGGTTACCGTAACCAAGTTTTTCTTTCTCACTCCTTATGTTATG
TACTTTTTCTTACTTAATCCATACTTTTTTACCTTTTCTGAAGTGTGGGGCAAAGGGTGCCCTCT
ACTTATACTTCTAACTAAAGGCGAACTGCAGGCATTGCAAGCAAACAAAGCGCCCCCGCCCGTTT
GAGTCGCGAAGGGGCCGCTTGCTTAAAAAATTTATTTTATATAAA
Right flanking sequence: Indices 285933 -- 286432
TATATCTATAAACTAAGAAAATCCGTTTTTTTTATCCAATTGTTCATTCCCGGGAAGAGGAAGAA
GCAGATAGAGCAAAGGCCTCCTCTTTCCTTCCGTCCGCTCTTCCCGAAGTGGGCGAATTGCATGT
AGAGATCCGCAGGGGCTTATAGTTTAATTGGTTGAAACGTACCGCTCATAACGGTTATATTGTAG
GTTCGAGCCCTACTAAGCCTACCACCCCCTTCTCTGCACCCGATACAAGGCAGTCGAAGTCCTCG
CCACCCTGCAGATCTCAATCTAGCGACGGCACCTGGAACCGCACAGCTTCCGCTGCCCTTCGGGC
ACGCCTCCTACGCTCTTGCGGCATGCCCCCTTCGGGCAATACGGCTTTCGTGAGTAATACGCGAA
GCAGCTGAGCGATAGCTCTCTTCGATCGCTATATTCTTGCGATAGCGAAGGCGTAGTTCATCCTC
TAAGAGAGAGTAGATGCGAAGATTCGGATCGAAGATCTTCGCTTG
Found at i:292004 original size:39 final size:39
Alignment explanation
Indices: 291950--292047 Score: 196
Period size: 39 Copynumber: 2.5 Consensus size: 39
291940 GAGAGGTATT
291950 GGATTATTGATAGGTATATTTTCATTTGGGTTGAAAGGG
1 GGATTATTGATAGGTATATTTTCATTTGGGTTGAAAGGG
291989 GGATTATTGATAGGTATATTTTCATTTGGGTTGAAAGGG
1 GGATTATTGATAGGTATATTTTCATTTGGGTTGAAAGGG
292028 GGATTATTGATAGGTATATT
1 GGATTATTGATAGGTATATT
292048 ATCAACTGAA
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 59 1.00
ACGTcount: A:0.27, C:0.02, G:0.30, T:0.42
Consensus pattern (39 bp):
GGATTATTGATAGGTATATTTTCATTTGGGTTGAAAGGG
Left flanking sequence: Indices 291450 -- 291949
ACCGGAGGAATTCTCTATACACGGCGGAGAGATTCCCGTTTTGCTGGGCATCTTGGATCCAGTAC
CGCAGCATAGCTTCCACCAATCCTTTATCAAAAGGGGACTGGGGGTCAGTCAGATTTAAACGACT
CATAAAGTCGTTGATAAATGAAAGACCCTCAGTCCTTATGGCACCCTCGCGAAAGGGCGAGTCTG
CCAATATTTGAGTGAGCCGCTCAGTTGTTTCCCCCATTAACAAATTAACGAGTTGCTCTAAGAGA
TTCGCCTTAAACTCTAACAGGCGAAGATCGAAGAGCTCATTGCTCAGGACATTACGGTAGTGTGC
AATGGTCAGGGTGTCATCGAGAAACCCTCTGACTAAGGCTTCGTACTCGCCAAAGTTCATTTGGG
GTGGCAAGCCGTCAATCAAACGGTTCTCTAGAAGTCGTATCCGAGCAAAGAGTTCTAATTCCGTC
TCTTGGTTCAGTATACGAAATTGATCGACAACGTCGAGAGGTATT
Right flanking sequence: Indices 292048 -- 292547
ATCAACTGAATTGGAATCTGCGATTGAGCCAGAGTTCACGGCCAAAGAGCCCGAAAATAAATGCA
TAAGATCGATGTCAGCAAAAGTGGCCTTTACCAAAAACCAATTCCACAAAATCAAATAAAAGTAA
GCGAACCCAAGCCTAACGAGTGGTCTATCTAAGAAGAAGATGATTATATAAAACATGAAATATTT
GATAGTATCCATTTCGGATAAGATTCACTTGTAGTTCCGCTTCTTGCTATAACAGAAAGACTTGT
AGGAAATCTGGTTGTTCCAGAAAGGCATGGGAGTTTTGGGCGTATTTCATACGCTATTTTGATTT
CATTATTTTTTTCATCCACCTATACCTACAGCATTCTATTTGACTGTGGCAACCTTTCTATTATG
AGGCATAAAACTACTTACTTAAGATATGGGGTTCTTACCAATTCTTTATTAAATAAAGCTGTCTA
TGTAAATCTAAATCTTTCCGCTTGCGTCTCCTTCTCCGTCTTGAT
Found at i:321815 original size:15 final size:16
Alignment explanation
Indices: 321773--321815 Score: 52
Period size: 18 Copynumber: 2.6 Consensus size: 16
321763 TCCTACCTTA
321773 ACAGTCGATCATGCGCTC
1 ACAGTCGATCATGCG--C
*
321791 ACACTCGATCATGCG-
1 ACAGTCGATCATGCGC
321806 ACAGTCGATC
1 ACAGTCGATC
321816 TGTCCATCCG
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
15 9 0.39
18 14 0.61
ACGTcount: A:0.26, C:0.33, G:0.21, T:0.21
Consensus pattern (16 bp):
ACAGTCGATCATGCGC
Left flanking sequence: Indices 321273 -- 321772
TTGCATGAAAAAACTCAAAAAAGAATAGGTGATCGTAGGTCAGCCCGTGGGTAAGTTCCGGGCTT
TCATTGATATTTTCTCGTTCATGATCTCTAATCCTTTGAGTAGATTGGGCAGGGGTAAGACTATG
CACATAGCTTCGGTTCCGTCTTGTTTGCCAAGGAGATATGGTTGCTTTTCCTTCTTCAGTAGGCT
TTCCCGCGGGTTCGGTTACAGATAGGATACACGGGTCAAAGGGAAGGCTTGAGTTCAGAGACGAA
GTTGGCTTTGAAGGTACAAACTTTCAGACAGTTCCTTACTTTCTATTCTCTAATCTCGTATGGCA
GCTTTCAGTCCCATCTTCAGTTTCGGGATATTGCTCCTATGCCTCTTCGAAGTGAAGCCCTTATA
TCGAATGATTCAAGACATTTTATTTTATAATAGAAATGAGAGGACAGCCGAATTGACAGAAAATA
GTCTGAATTTGTTGATCAACTCTCTTTGTTGAAGGTCCTACCTTA
Right flanking sequence: Indices 321816 -- 322315
TGTCCATCCGACTACATTCACTGGGGGGTGAGGTTGTCCAATTTCAATTATGTGCCGCTCGTTGA
CATCTAGTTTCCATTGCCGGTGTGAGAGATCTTCCTTCGGTTCTAGTTAAGTATGGCAACTTGAG
GTCTCCTATTTAACTTTCACCAGCCATTGGGAACTCAAATAAACTTTCATTTAACGGCAGGCGAG
AAAGGTTCTAAAAGAAAGAAAGGTAGAAGGGGGGTTTTCTACCGTTTCGGGGTTCTCTTGTGGAC
TGGCTGTTGACTGGCCGGGAGAAAACCGGTGCTTTTAGCTTAAACGGATTTTCACTGGATCGGAG
CCTTTCGGAAATCCTCCCCTTTTGGCTTCACTTGAGCGGTTGACGCAATCCAAGAGGAAGAGGAA
GCTAAACCCGTGCTGACGAATAAACAAACCCCTTAATTCGTCGAGTAAAGTAAATAGGGAAGGTA
TAGGTTTGTTATGAATGACCCCGTATCGAATACAGGTAATAATAT
Found at i:330017 original size:39 final size:39
Alignment explanation
Indices: 329963--330041 Score: 140
Period size: 39 Copynumber: 2.0 Consensus size: 39
329953 CGATTTTCTA
* *
329963 TTCACTCATGATCTGGCCTGGTCGACCCGATCATGATAT
1 TTCACTCATGATCTGGCCCGGTCGACCCAATCATGATAT
330002 TTCACTCATGATCTGGCCCGGTCGACCCAATCATGATAT
1 TTCACTCATGATCTGGCCCGGTCGACCCAATCATGATAT
330041 T
1 T
330042 GAAGGATGGG
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.22, C:0.29, G:0.19, T:0.30
Consensus pattern (39 bp):
TTCACTCATGATCTGGCCCGGTCGACCCAATCATGATAT
Left flanking sequence: Indices 329463 -- 329962
GCCCACACCTGTGTAGAGTAGATCGTTCAACACCTGCGGCACAAACCCATTTTTGACCTATTGGT
CCTAGTATCATAGGCGACCGAACGGCCGCCCCCTAATTACTAGACCAACCTGCTATAATAATTCC
ATAAACACCTAGCGAAGATATGGCAAACAAATAAAGTAGCCCTATGTTCGAATCTGACAATACCA
TACCATAATCAAAAGGTACAACGGCCCGAGCAACCAGACTTAACATAAATGTAGTCACTGGAGCC
ATTCTAAAAAGGGAGAAATTAGCACTACTTGGTGAAATAGGTTCTTTTAGAATCAATTTCAAACC
ATCTGCTAGAGGTTGTAACAATCCGAACGATCCCACTACATCAGGACCCTTTCGACGTTGCACAA
AAGCCATTACTTTACGTTCAGCTAGCACTAAAAAGGCTACTCCTAGTAGAAGTGGTAGAATTATT
CCAAGTATTTCGGCTGGAACTGCTATGTACGTTTTCGATTTTCTA
Right flanking sequence: Indices 330042 -- 330541
GAAGGATGGGACCTTTTCTCGAAAAACTCCGGATCCAGAGAAGAGTTGAAGATGGTGCAACATCG
AATCCTGTCACCTTACTTCGAATGGAATCTTAGCCCGCCTCACTTGCTTTCTGTACTGCATAAGG
GCCATAAGGGCATAAGCGAAGTCAAGGGATTTCCTTCTAACTAGTGGCTGAGAGTAAGCAAGCTA
CCTTCATTCAACAGATTTGTGGTTGAGTCAATAACATGCTCTGGGTCGGGAATCTTTGCTCTTCT
CTTTTGCATTTCCGCTGCCTGCGTTCTTCTTCGTGTCCGTCCGTATCGCAAAGCTGGTCGACGCC
AGCTGTAATGGTTGAAAATAGGGGGCCAACCAAGACCCTACCCTAATAAAGCTTTGTTCGATAAA
GCAAACGATTCGTTCCGACAACTTCGGACCAGATTAACCCTTTTGAATTAGCCGATCTTACAAAA
TGGATCGGGCGGGCTGGTTGGGAAGGGGTGATTTGCGGAGAAAAG
Found at i:366377 original size:13 final size:13
Alignment explanation
Indices: 366359--366384 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
366349 CCCCGCCCTA
366359 TAGAATGAATAAG
1 TAGAATGAATAAG
366372 TAGAATGAATAAG
1 TAGAATGAATAAG
366385 GAGAGGCCTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.00, G:0.23, T:0.23
Consensus pattern (13 bp):
TAGAATGAATAAG
Left flanking sequence: Indices 365859 -- 366358
TGTCCAGCGGTGTTGTCCACCAGAACATCGATGTGCGGAAGAGAAAAAGAATCTTTTCGGCTTGC
CTTGTTTAGGGTCTTTTGACTCACGGAACCTGCTTTATGAGGGAAAAACCGTTCTCGAAAAGCGT
GACCATCCCGTTGAATCTCGTTACCCTCCCGTGTGGTTATGGGGGCGCGCCCGCTTTCCACTATT
ATGGAGCCGGGCCGCAAGCAAGTGAATGCGATCCCGCCCTCCATCAGCCGGTGTGTGTGAGCTTC
GCTCCTTATAGCTCTACACCGCCGCCGGCCACTTTAGCTCCTCTACCATATGATTCATTCTTTGG
AAGTTAGGCACGTGACTCGATAGCGCAGGCACAAGACCTTTGAATGCAAACAAAGAATGGCGAGA
CCGCATATAGTTTGGAACCCAAGCTTACCTTATTATTATTCAAAGGGGAAGGTTTGATAAAGGAG
CTTTTAAGCCCTTTTGCTGAATTGTTGGTCCGCAGCCCCGCCCTA
Right flanking sequence: Indices 366385 -- 366884
GAGAGGCCTGTTGATGACCGAGCCACTCTTATACTACTCCTTACCTCACCCCCCCCCTTGTCACT
TAAAGGGCGAAGTCGCTGAAGCGAGTCTAAAGGCCAAAGAGTGATCTTTGAACGCTACTACGCAT
CCTTACTAATAGTATAGTGTAAGGTAGGTTTGGGTATAGCAGGACTTGAACCTGCGACCATTAGG
TTAAAAGCCCAATGCTCTACCAACTGAGCTATACACCCCCAAAATATATAGTAAAAAATAAGGAT
TGGTGCGGAAAAAAAAGGGGGCAGCCGCGGTCGAACTCTAATTCTGGAAAAAAGTCGGGGCCCCT
TTTCCAAGTCTACCAGATAGAAGATGATAGAGGGCCATATCGTTGCGTTGGACAAGACGGCGCCG
TCTCACTTCGAGTTCCTTCCTTCGTAGTAAAATCAGATGATACGCTTCGGCGATGTTACCTACCA
AATTTAAGGCCTGCTAGGTGATCGAAATTGCTCAGGTCAGTGAGG
Found at i:407583 original size:22 final size:22
Alignment explanation
Indices: 407555--407607 Score: 65
Period size: 22 Copynumber: 2.5 Consensus size: 22
407545 CAACTCGACC
*
407555 GTAGGGA-GAGGGAGAAGCTAGT
1 GTAGGGACGAGGGAG-ACCTAGT
*
407577 GTAGGGACGAGGGTGACCTAGT
1 GTAGGGACGAGGGAGACCTAGT
407599 GTA-GGACGA
1 GTAGGGACGA
407608 TAGTAACCTC
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
21 6 0.21
22 16 0.57
23 6 0.21
ACGTcount: A:0.28, C:0.09, G:0.47, T:0.15
Consensus pattern (22 bp):
GTAGGGACGAGGGAGACCTAGT
Left flanking sequence: Indices 407055 -- 407554
CCCGGCTTTCCGGTAAGGATTTCTCTTCCTTAGCGTTCACATTAAACAATTAAACCTATTCCTAA
AGTGGAAGGCTTCGATCCGTATAGCGCGGGATGATGGATATCTTGAGTTAATAGAGCCAACCAAA
GCTTGCTTACTTAGTGTGTAAAGATTACAGCTCCGGAAGATACCGGGCATCTGTGAAAGCGTCTG
CACTCTCCTCATTCTACTCAGAAGGAGCTCCAATTCCTATTGGTTTTGGCAGAGGCAAGAAAGAA
AGAAGCTAGGCTTCACCCAATCTTCCAATCAAAATCTTACGCCGAGAGGGCAAAAAGCTATAGGG
AAATCGATCGATAGGATTGCATCCCTGGCCATAAACCGTAGAAACGTCCAGAAATGGTCATACAA
TCAATTTAGCTATCTGGACCTAGCTCGATATCAGTAGAAGATAGAGCCGCTAGCTCGACTGGGGA
TGGTTACGTGCTTGTCTGAGAGGAAATGGGCGGGGCAACTCGACC
Right flanking sequence: Indices 407608 -- 408107
TAGTAACCTCCCCTTTTCTTCGTAACGAGTGTTCCCCGAGCAGCGGAGCATTTATGAGTGGATGT
AGCTGTGATAGCTTAGAGTTTCACTGATTGGTATGCCAAAAGACTTTTTATAATATCTTATAAAA
AGAGAGTTACTAAGAGTATTGCTAGAAATTATACGTAAGATAATAGAAGTAAAACTCTTTTGCAG
CTCTGGAGAAGGGGTAGCAAGTCGGAGACTCCCATGGATTGATCTATAACAACTACTGTGCCCGA
AGCGCCTGCATTTAGACCGGTCGCAGTTTAAGGTGAAGGTTCAATTGATCTTGCCTTGTAGGTAG
GCAGCGCCTCGAGAAAGACCATAAACATAAAAAAGAGGAACTCAAGCAGAGGCTGAAAGGCCCTT
TCTCTTTCCTTACCGTCTAGCGATACCATTTACATTTGTAGGAATGCATGGGACTACTTTCTATA
AAGCACTTTAGGTGGCTCTACTACTTCCATAGGCGGCCGGAGGAG
Found at i:407616 original size:21 final size:22
Alignment explanation
Indices: 407572--407616 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 22
407562 GAGGGAGAAG
* *
407572 CTAGTGTAGGGACGAGGGTGAC
1 CTAGTGTAGGGACGAGAGTAAC
*
407594 CTAGTGTA-GGACGATAGTAAC
1 CTAGTGTAGGGACGAGAGTAAC
407615 CT
1 CT
407617 CCCCTTTTCT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
21 12 0.60
22 8 0.40
ACGTcount: A:0.27, C:0.16, G:0.36, T:0.22
Consensus pattern (22 bp):
CTAGTGTAGGGACGAGAGTAAC
Left flanking sequence: Indices 407072 -- 407571
GATTTCTCTTCCTTAGCGTTCACATTAAACAATTAAACCTATTCCTAAAGTGGAAGGCTTCGATC
CGTATAGCGCGGGATGATGGATATCTTGAGTTAATAGAGCCAACCAAAGCTTGCTTACTTAGTGT
GTAAAGATTACAGCTCCGGAAGATACCGGGCATCTGTGAAAGCGTCTGCACTCTCCTCATTCTAC
TCAGAAGGAGCTCCAATTCCTATTGGTTTTGGCAGAGGCAAGAAAGAAAGAAGCTAGGCTTCACC
CAATCTTCCAATCAAAATCTTACGCCGAGAGGGCAAAAAGCTATAGGGAAATCGATCGATAGGAT
TGCATCCCTGGCCATAAACCGTAGAAACGTCCAGAAATGGTCATACAATCAATTTAGCTATCTGG
ACCTAGCTCGATATCAGTAGAAGATAGAGCCGCTAGCTCGACTGGGGATGGTTACGTGCTTGTCT
GAGAGGAAATGGGCGGGGCAACTCGACCGTAGGGAGAGGGAGAAG
Right flanking sequence: Indices 407617 -- 408116
CCCCTTTTCTTCGTAACGAGTGTTCCCCGAGCAGCGGAGCATTTATGAGTGGATGTAGCTGTGAT
AGCTTAGAGTTTCACTGATTGGTATGCCAAAAGACTTTTTATAATATCTTATAAAAAGAGAGTTA
CTAAGAGTATTGCTAGAAATTATACGTAAGATAATAGAAGTAAAACTCTTTTGCAGCTCTGGAGA
AGGGGTAGCAAGTCGGAGACTCCCATGGATTGATCTATAACAACTACTGTGCCCGAAGCGCCTGC
ATTTAGACCGGTCGCAGTTTAAGGTGAAGGTTCAATTGATCTTGCCTTGTAGGTAGGCAGCGCCT
CGAGAAAGACCATAAACATAAAAAAGAGGAACTCAAGCAGAGGCTGAAAGGCCCTTTCTCTTTCC
TTACCGTCTAGCGATACCATTTACATTTGTAGGAATGCATGGGACTACTTTCTATAAAGCACTTT
AGGTGGCTCTACTACTTCCATAGGCGGCCGGAGGAGCTGAATAGG
Found at i:431432 original size:15 final size:15
Alignment explanation
Indices: 431412--431451 Score: 53
Period size: 18 Copynumber: 2.5 Consensus size: 15
431402 AAGGCTAGGG
431412 AAGGCTAGGGCATAA
1 AAGGCTAGGGCATAA
431427 AAGGCTAGTAGGGCATAA
1 AAGGC---TAGGGCATAA
431445 AAGGCTA
1 AAGGCTA
431452 ACAGCTTTTC
Statistics
Matches: 22, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
15 7 0.32
18 15 0.68
ACGTcount: A:0.40, C:0.12, G:0.33, T:0.15
Consensus pattern (15 bp):
AAGGCTAGGGCATAA
Left flanking sequence: Indices 430912 -- 431411
GTGAAGCTTTCGGAGCGTAGTGAGGTGAGCCAGTGCCTGTTGGTGGTCAAGTCCCAGTGGAAGTG
GAAGTTGTTGGGCGTTCAGGTTGCAAAGGAAGTTGGTGGGCTAACGGTGGTCCAGGTAAGGTAGG
TGGGGAAGGCTCGCCACGAGATCGACCGATAGCTTTGACCCAACCCCGGAAGCGGAAGTGCCAGA
GAGACGATCTTTGTGAGGCAGAGTGACATTCCAAGGTCAGGTATAAGGTGCTACGGGAACGATGT
CTCAAAGGTCAGTGCCAAGGGCTCAACGCGGAAGCAATCCGCTGCTCACAGGGACCGTGCGGGCT
GACGCTCTTCTCTCTCAGGCAAAGAAATGTGATTTTAACTTTCGCTGGTTCAAGGTAGGCTGCTT
AAGCAGAGGTTGTTGTTGTTGTTGGCGTGAGTGAAGGCGTTCCTTCCGGTGGGCATGACGAAGCT
AAGCTGGAACTAATTACGAAAGCATAATCGTTTTCAAGGCTAGGG
Right flanking sequence: Indices 431452 -- 431951
ACAGCTTTTCCGAGTCAAAAGCGGCTAAAAACACTCAGCCATAAGTTCCGGTTTCACCACAGTAC
AGGGCTAAATAAAGGGGCTCAAGGTTGGCATGACGAAGCGTCGGGCATCAAAGCTACCGGTTTCA
AAGTTCAGTTCTAACGGGCGTTCGGAAAGGCTTGAAATCGTAACGTACAGGTAGACTTTGCCAAG
GCAAGGAAAGTAGTAAGAAAGATATCGATGGAGCGGGCAGAACCTCGAGTAAGACAACCAACCCT
GGAGGCCATGGCTTGGCTTTATCCCGTAGGTAGTAAGAACAGAGAGAGCCTTCTGTGCTAGCAAT
ACAGAGAGGTGGGGATTGAATGAGGCGAGCGCTGACTGCAGCAAGACCACCAGACCCTAAAAAGA
ATAATAACAACGTTCAGCAAGCCGAAGCCAGCCAGACAGGCACCACCAGATACAGGGCGGGCAGT
TACTCCACCGAATCAGAGGGCAGATACCCGGACCAAAAGGAGTGA
Found at i:431440 original size:18 final size:18
Alignment explanation
Indices: 431417--431451 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
431407 TAGGGAAGGC
431417 TAGGGCATAAAAGGCTAG
1 TAGGGCATAAAAGGCTAG
431435 TAGGGCATAAAAGGCTA
1 TAGGGCATAAAAGGCTA
431452 ACAGCTTTTC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.40, C:0.11, G:0.31, T:0.17
Consensus pattern (18 bp):
TAGGGCATAAAAGGCTAG
Left flanking sequence: Indices 430917 -- 431416
GCTTTCGGAGCGTAGTGAGGTGAGCCAGTGCCTGTTGGTGGTCAAGTCCCAGTGGAAGTGGAAGT
TGTTGGGCGTTCAGGTTGCAAAGGAAGTTGGTGGGCTAACGGTGGTCCAGGTAAGGTAGGTGGGG
AAGGCTCGCCACGAGATCGACCGATAGCTTTGACCCAACCCCGGAAGCGGAAGTGCCAGAGAGAC
GATCTTTGTGAGGCAGAGTGACATTCCAAGGTCAGGTATAAGGTGCTACGGGAACGATGTCTCAA
AGGTCAGTGCCAAGGGCTCAACGCGGAAGCAATCCGCTGCTCACAGGGACCGTGCGGGCTGACGC
TCTTCTCTCTCAGGCAAAGAAATGTGATTTTAACTTTCGCTGGTTCAAGGTAGGCTGCTTAAGCA
GAGGTTGTTGTTGTTGTTGGCGTGAGTGAAGGCGTTCCTTCCGGTGGGCATGACGAAGCTAAGCT
GGAACTAATTACGAAAGCATAATCGTTTTCAAGGCTAGGGAAGGC
Right flanking sequence: Indices 431452 -- 431951
ACAGCTTTTCCGAGTCAAAAGCGGCTAAAAACACTCAGCCATAAGTTCCGGTTTCACCACAGTAC
AGGGCTAAATAAAGGGGCTCAAGGTTGGCATGACGAAGCGTCGGGCATCAAAGCTACCGGTTTCA
AAGTTCAGTTCTAACGGGCGTTCGGAAAGGCTTGAAATCGTAACGTACAGGTAGACTTTGCCAAG
GCAAGGAAAGTAGTAAGAAAGATATCGATGGAGCGGGCAGAACCTCGAGTAAGACAACCAACCCT
GGAGGCCATGGCTTGGCTTTATCCCGTAGGTAGTAAGAACAGAGAGAGCCTTCTGTGCTAGCAAT
ACAGAGAGGTGGGGATTGAATGAGGCGAGCGCTGACTGCAGCAAGACCACCAGACCCTAAAAAGA
ATAATAACAACGTTCAGCAAGCCGAAGCCAGCCAGACAGGCACCACCAGATACAGGGCGGGCAGT
TACTCCACCGAATCAGAGGGCAGATACCCGGACCAAAAGGAGTGA
Found at i:442388 original size:20 final size:20
Alignment explanation
Indices: 442354--442391 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
442344 CTCATAGCTG
442354 CTAGCAACTCCTAGCTACAA
1 CTAGCAACTCCTAGCTACAA
442374 CTAG-AACTCCTTAGCTAC
1 CTAGCAACTCC-TAGCTAC
442392 TAAAACAAGA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 6 0.35
20 11 0.65
ACGTcount: A:0.32, C:0.34, G:0.11, T:0.24
Consensus pattern (20 bp):
CTAGCAACTCCTAGCTACAA
Left flanking sequence: Indices 441854 -- 442353
TCCTGGCTACTCCACCCGGATGGGTGCCACAAACACAGCTTGTACTGGCTAAACATCTCCTATCT
TTCCATTTGAAGGAGTCTATCCCACTGCTTAAGTATGACAAATGTCTGACACTACTATATCGGAC
GTAAAGTCTTGCCCGGCCTCACTGAGTGGATCTGGTGCCCACACCGTAGCTAGTCCTCTTAGCTT
TATTGGAGCAGGTGCCCAAGCTTCTTTGGCTAAAGCACATCTCCTGTCTGAACCCTTGACCTATT
TGAAAGACAAATGCACAAACCCAAATTGAAGAAAGAGATGCTCGAGTCTCTTACGCCATCCTAGG
CGGTTCTCCCGTAGCGTCTCCGCCGGCGACTTTCTAAGGTTCAGGGTTGTCTGCCTATCCTAGGT
GACCATCTTCGTCTACTACAACGAGGGGTGTGTGCCATAGAGTGTGGTACAGGTGTCACCAGTCC
CAGACAGATTTGTTTATGATCTCGTCAACTCGGAACTCATAGCTG
Right flanking sequence: Indices 442392 -- 442891
TAAAACAAGAGCTCTTTCACTCGGGCGACTTTTCTTATTGGGCAAGTTGCCACCCGTTGTTCAAT
ACCCTAACTATAGTAAGTAGCTTAATCTGTCGAGAAGAACCATCCCTACCGGATCGGACATGTAA
CCAGTCTTCTCCGCTTGAGAGGGAAAGACGGCTGCTCTGTGAACAAAACAACCCTAGTTGCTGGT
CCTGCTCCTGCTGCTGTCTGAACTGCCACCTCTGCTCCAATACATAAAGCAGCTCCAGCTTGAAG
CTATTGTAGCAGCTCTGTCCCATTCATCACTGCTTTCTGTTAAAAAGAAAAGAGCTGCTCCTCTC
CGATCTAAGTCCTCTCTCTAGTCAGAAATTGCGTAAGTTAATCAGGATGGATCGACAGGCTTTCC
AAACCTACAGGTCTCTTCCTCGGACCTAGCATTGCTGCCTGGCCCATCACTTCTTCTTTTCTTGA
CTTCGATGATTTGCCTGCAGGAGGATCATCGAAGGTTGGAGAAAA
Done.