Specifications
==============

Sequence source file: "/mnt/biodata02/home/xyzhang/pmgdraw-test/test_set/outdir_mt2/NC_065229.1/NC_065229/Repetitive_sequence/123.misa.ini"

Definement of microsatellites (unit size / minimum number of repeats):
(1/10) (2/6) (3/5) (4/5) (5/5) (6/5) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              1
Total size of examined sequences (bp):           443525
Total number of identified SSRs:                 54
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    2


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	45
2	4
3	5

Frequency of identified SSR motifs
----------------------------------

Repeats	5	6	7	8	9	10	11	12	13	14	15	16	total
A	-	-	-	-	-	13	7	1	1			2	24
C	-	-	-	-	-	1							1
T	-	-	-	-	-	11	6	1	1	1			20
AG	-	1	1										2
AT	-	1											1
TC	-		1										1
AGT	1												1
CTT	1												1
GTT	2												2
TAT			1										1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	5	6	7	8	9	10	11	12	13	14	15	16	total
A/T	-	-	-	-	-	24	13	2	2	1		2	44
C/G	-	-	-	-	-	1							1
AG/CT	-	1	2										3
AT/AT	-	1											1
AAC/GTT	2												2
AAG/CTT	1												1
AAT/ATT			1										1
ACT/AGT	1												1