Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: MW080658
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 469928
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Found at i:20190 original size:39 final size:39
Alignment explanation
Indices: 20135--20213 Score: 140
Period size: 39 Copynumber: 2.0 Consensus size: 39
20125 CCCATCCTTC
* *
20135 AATATCATGATTGGGTCGACCGGGCCAGATCATGAGTGA
1 AATATCATGATCGGGTCGACCAGGCCAGATCATGAGTGA
20174 AATATCATGATCGGGTCGACCAGGCCAGATCATGAGTGA
1 AATATCATGATCGGGTCGACCAGGCCAGATCATGAGTGA
20213 A
1 A
20214 TAGAAAATCG
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.30, C:0.19, G:0.29, T:0.22
Consensus pattern (39 bp):
AATATCATGATCGGGTCGACCAGGCCAGATCATGAGTGA
Left flanking sequence: Indices 19635 -- 20134
CTTTTCTCCGCAAATCACCCCTTCCCAACCAGCCCGCCCGATCCATTTTGTAAGATCGGCTAATT
CAAAAGGGTTAATCTGGTCCGAAGTTGTCGGAACGAATCGTTTGCTTTATCGAACAAAGCTTTAT
TAGGGTAGGGTCTTGGTTGGCCCCCTATTTTCAACCATTACAGCTGGCGTCGACCAGCTTTGCGA
TACGGACGGACACGAAGAAGAACGCAGGCAGCGGAAATGCAAAAGAGAAGAGCAAAGATTCCCGA
CCCAGAGCATGTTATTGACTCAACCACAAATCTGTTGAATGAAGGTAGCTTGCTTACTCTCAGCC
ACTAGTTAGAAGGAAATCCCTTGACTTCGCTTATGCCCTTATGGCCCTTATGCAGTACAGAAAGC
AAGTGAGGCGGGCTAAGATTCCATTCGAAGTAAGGTGACAGGATTCGATGTTGCACCATCTTCAA
CTCTTCTCTGGATCCGGAGTTTTTCGAGAAAAGGTCCCATCCTTC
Right flanking sequence: Indices 20214 -- 20713
TAGAAAATCGAAAACGTACATAGCAGTTCCAGCCGAAATACTTGGAATAATTCTACCACTTCTAC
TAGGAGTAGCCTTTTTAGTGCTAGCTGAACGTAAAGTAATGGCTTTTGTGCAACGTCGAAAGGGT
CCTGATGTAGTGGGATCGTTCGGATTGTTACAACCTCTAGCAGATGGTTTGAAATTGATTCTAAA
AGAACCTATTTCACCAAGTAGTGCTAATTTCTCCCTTTTTAGAATGGCTCCAGTGACTACATTTA
TGTTAAGTCTGGTTGCTCGGGCCGTTGTACCTTTTGATTATGGTATGGTATTGTCAGATTCGAAC
ATAGGGCTACTTTATTTGTTTGCCATATCTTCGCTAGGTGTTTATGGAATTATTATAGCAGGTTG
GTCTAGTAATTAGGGGGCGGCCGTTCGGTCGCCTATGATACTAGGACCAATAGGTCAAAAATGGG
TTTGTGCCGCAGGTGTTGAACGATCTACTCTACACAGGTGTGGGC
Found at i:28381 original size:15 final size:16
Alignment explanation
Indices: 28361--28403 Score: 52
Period size: 18 Copynumber: 2.6 Consensus size: 16
28351 CGGATGGACA
28361 GATCGACTGT-CGCAT
1 GATCGACTGTGCGCAT
*
28376 GATCGAGTGTGAGCGCAT
1 GATCGACTGT--GCGCAT
28394 GATCGACTGT
1 GATCGACTGT
28404 TAAGGTAGGA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
15 9 0.39
18 14 0.61
ACGTcount: A:0.21, C:0.21, G:0.33, T:0.26
Consensus pattern (16 bp):
GATCGACTGTGCGCAT
Left flanking sequence: Indices 27861 -- 28360
ATATTATTACCTGTATTCGATACGGGGTCATTCATAACAAACCTATACCTTCCCTATTTACTTTA
CTCGACGAATTAAGGGGTTTGTTTATTCGTCAGCACGGGTTTAGCTTCCTCTTCCTCTTGGATTG
CGTCAACCGCTCAAGTGAAGCCAAAAGGGGAGGATTTCCGAAAGGCTCCGATCCAGTGAAAATCC
GTTTAAGCTAAAAGCACCGGTTTTCTCCCGGCCAGTCAACAGCCAGTCCACAAGAGAACCCCGAA
ACGGTAGAAAACCCCCCTTCTACCTTTCTTTCTTTTAGAACCTTTCTCGCCTGCCGTTAAATGAA
AGTTTATTTGAGTTCCCAATGGCTGGTGAAAGTTAAATAGGAGACCTCAAGTTGCCATACTTAAC
TAGAACCGAAGGAAGATCTCTCACACCGGCAATGGAAACTAGATGTCAACGAGCGGCACATAATT
GAAATTGGACAACCTCACCCCCCAGTGAATGTAGTCGGATGGACA
Right flanking sequence: Indices 28404 -- 28903
TAAGGTAGGACCTTCAACAAAGAGAGTTGATCAACAAATTCAGACTATTTTCTGTCAATTCGGCT
GTCCTCTCATTTCTATTATAAAATAAAATGTCTTGAATCATTCGATATAAGGGCTTCACTTCGAA
GAGGCATAGGAGCAATATCCCGAAACTGAAGATGGGACTGAAAGCTGCCATACGAGATTAGAGAA
TAGAAAGTAAGGAACTGTCTGAAAGTTTGTACCTTCAAAGCCAACTTCGTCTCTGAACTCAAGCC
TTCCCTTTGACCCGTGTATCCTATCTGTAACCGAACCCGCGGGAAAGCCTACTGAAGAAGGAAAA
GCAACCATATCTCCTTGGCAAACAAGACGGAACCGAAGCTATGTGCATAGTCTTACCCCTGCCCA
ATCTACTCAAAGGATTAGAGATCATGAACGAGAAAATATCAATGAAAGCCCGGAACTTACCCACG
GGCTGACCTACGATCACCTATTCTTTTTTGAGTTTTTTCATGCAA
Found at i:58168 original size:39 final size:39
Alignment explanation
Indices: 58125--58226 Score: 204
Period size: 39 Copynumber: 2.6 Consensus size: 39
58115 CCAATTCAGT
58125 TGATAATATACCTATCAATAATCCCCCTTTCAACCCAAA
1 TGATAATATACCTATCAATAATCCCCCTTTCAACCCAAA
58164 TGATAATATACCTATCAATAATCCCCCTTTCAACCCAAA
1 TGATAATATACCTATCAATAATCCCCCTTTCAACCCAAA
58203 TGATAATATACCTATCAATAATCC
1 TGATAATATACCTATCAATAATCC
58227 AATACCTCTC
Statistics
Matches: 63, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 63 1.00
ACGTcount: A:0.39, C:0.28, G:0.03, T:0.29
Consensus pattern (39 bp):
TGATAATATACCTATCAATAATCCCCCTTTCAACCCAAA
Left flanking sequence: Indices 57625 -- 58124
GTATATCAAGACGGAGAAGGAGACGCAAGCGGAAAGATTTAGATTTACATAGACAGCTTTATTTA
ATAAAGAATTGGTAAGAACCCCATATCTTAAGTAAGTAGTTTTATGCCTCATAATAGAAAGGTTG
CCACAGTCAAATAGAATGCTGTAGGTATAGGTGGATGAAAAAAATAATGAAATCAAAATAGCGTA
TGAAATACGCCCAAAACTCCCATGCCTTTCTGGAACAACCAGATTTCCTACAAGTCTTTCTGTTA
TAGCAAGAAGCGGAACTACAAGTGAATCTTATCCGAAATGGATACTATCAAATATTTCATGTTTT
ATATAATCATCTTCTTCTTAGATAGACCACTCGTTAGGCTTGGGTTCGCTTACTTTTATTTGATT
TTGTGGAATTGGTTTTTGGTAAAGGCCACTTTTGCTGACATCGATCTTATGCATTTATTTTCGGG
CTCTTTGGCCGTGAACTCTGGCTCAATCGCAGATTCCAATTCAGT
Right flanking sequence: Indices 58227 -- 58726
AATACCTCTCGACGTTGTCGATCAATTTCGTATACTGAACCAAGAGACGGAATTAGAACTCTTTG
CTCGGATACGACTTCTAGAGAACCGTTTGATTGACGGCTTGCCACCCCAAATGAACTTTGGCGAG
TACGAAGCCTTAGTCAGAGGGTTTCTCGATGACACCCTGACCATTGCACACTACCGTAATGTCCT
GAGCAATGAGCTCTTCGATCTTCGCCTGTTAGAGTTTAAGGCGAATCTCTTAGAGCAACTCGTTA
ATTTGTTAATGGGGGAAACAACTGAGCGGCTCACTCAAATATTGGCAGACTCGCCCTTTCGCGAG
GGTGCCATAAGGACTGAGGGTCTTTCATTTATCAACGACTTTATGAGTCGTTTAAATCTGACTGA
CCCCCAGTCCCCTTTTGATAAAGGATTGGTGGAAGCTATGCTGCGGTACTGGATCCAAGATGCCC
AGCAAAACGGGAATCTCTCCGCCGTGTATAGAGAATTCCTCCGGT
Found at i:64252 original size:8 final size:8
Alignment explanation
Indices: 64239--64278 Score: 53
Period size: 8 Copynumber: 4.6 Consensus size: 8
64229 TAGTTTATAG
64239 ATATAATT
1 ATATAATT
64247 ATATAATT
1 ATATAATT
64255 ATATATCTATT
1 ATATA---ATT
64266 ATATAATT
1 ATATAATT
64274 ATATA
1 ATATA
64279 TCTATTATTT
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
8 21 0.72
11 8 0.28
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (8 bp):
ATATAATT
Left flanking sequence: Indices 63739 -- 64238
CGGCCCAAGCGAAGATCTTCGATCCGAATCTTCGCATCTACTCTCTCTTAGAGGATGAACTACGC
CTTCGCTATCGCAAGAATATAGCGATCGAAGAGAGCTATCGCTCAGCTGCTTCGCGTATTACTCA
CGAAAGCCGTATTGCCCGAAGGGGGCATGCCGCAAGAGCGTAGGAGGCGTGCCCGAAGGGCAGCG
GAAGCTGTGCGGTTCCAGGTGCCGTCGCTAGATTGAGATCTGCAGGGTGGCGAGGACTTCGACTG
CCTTGTATCGGGTGCAGAGAAGGGGGTGGTAGGCTTAGTAGGGCTCGAACCTACAATATAACCGT
TATGAGCGGTACGTTTCAACCAATTAAACTATAAGCCCCTGCGGATCTCTACATGCAATTCGCCC
ACTTCGGGAAGAGCGGACGGAAGGAAAGAGGAGGCCTTTGCTCTATCTGCTTCTTCCTCTTCCCG
GGAATGAACAATTGGATAAAAAAAACGGATTTTCTTAGTTTATAG
Right flanking sequence: Indices 64279 -- 64778
TCTATTATTTTATATAAAATAAATTTTTTAAGCAAGCGGCCCCTTCGCGACTCAAACGGGCGGGG
GCGCTTTGTTTGCTTGCAATGCCTGCAGTTCGCCTTTAGTTAGAAGTATAAGTAGAGGGCACCCT
TTGCCCCACACTTCAGAAAAGGTAAAAAAGTATGGATTAAGTAAGAAAAAGTACATAACATAAGG
AGTGAGAAAGAAAAACTTGGTTACGGTAACCGAAGGTTAGGCCGACTACTTACTTTAGTATAGCT
ACACCTAAAAAAGTTTATTCCTACCCCCTTTTCTTCCCCTTTCTGTCAATGTTGCCAATTCTCAG
AATACTTATAATGTACCCTCGCGCATACAATTGCCCAACAACTTTCTTCCTCCGACTTCTTTAGC
CACTTCCGCATCTGTCGTCTTCGGGATCGGGAGAGCTTGCTTCGTGGCGGAGCATTTAGCAATTC
CAGCAGCCTGGTGAGGGCTGGCTGTCTGAGGACAGGTTAAGGCTG
Found at i:64268 original size:19 final size:19
Alignment explanation
Indices: 64244--64286 Score: 86
Period size: 19 Copynumber: 2.3 Consensus size: 19
64234 TATAGATATA
64244 ATTATATAATTATATATCT
1 ATTATATAATTATATATCT
64263 ATTATATAATTATATATCT
1 ATTATATAATTATATATCT
64282 ATTAT
1 ATTAT
64287 TTTATATAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.42, C:0.05, G:0.00, T:0.53
Consensus pattern (19 bp):
ATTATATAATTATATATCT
Left flanking sequence: Indices 63744 -- 64243
CAAGCGAAGATCTTCGATCCGAATCTTCGCATCTACTCTCTCTTAGAGGATGAACTACGCCTTCG
CTATCGCAAGAATATAGCGATCGAAGAGAGCTATCGCTCAGCTGCTTCGCGTATTACTCACGAAA
GCCGTATTGCCCGAAGGGGGCATGCCGCAAGAGCGTAGGAGGCGTGCCCGAAGGGCAGCGGAAGC
TGTGCGGTTCCAGGTGCCGTCGCTAGATTGAGATCTGCAGGGTGGCGAGGACTTCGACTGCCTTG
TATCGGGTGCAGAGAAGGGGGTGGTAGGCTTAGTAGGGCTCGAACCTACAATATAACCGTTATGA
GCGGTACGTTTCAACCAATTAAACTATAAGCCCCTGCGGATCTCTACATGCAATTCGCCCACTTC
GGGAAGAGCGGACGGAAGGAAAGAGGAGGCCTTTGCTCTATCTGCTTCTTCCTCTTCCCGGGAAT
GAACAATTGGATAAAAAAAACGGATTTTCTTAGTTTATAGATATA
Right flanking sequence: Indices 64287 -- 64786
TTTATATAAAATAAATTTTTTAAGCAAGCGGCCCCTTCGCGACTCAAACGGGCGGGGGCGCTTTG
TTTGCTTGCAATGCCTGCAGTTCGCCTTTAGTTAGAAGTATAAGTAGAGGGCACCCTTTGCCCCA
CACTTCAGAAAAGGTAAAAAAGTATGGATTAAGTAAGAAAAAGTACATAACATAAGGAGTGAGAA
AGAAAAACTTGGTTACGGTAACCGAAGGTTAGGCCGACTACTTACTTTAGTATAGCTACACCTAA
AAAAGTTTATTCCTACCCCCTTTTCTTCCCCTTTCTGTCAATGTTGCCAATTCTCAGAATACTTA
TAATGTACCCTCGCGCATACAATTGCCCAACAACTTTCTTCCTCCGACTTCTTTAGCCACTTCCG
CATCTGTCGTCTTCGGGATCGGGAGAGCTTGCTTCGTGGCGGAGCATTTAGCAATTCCAGCAGCC
TGGTGAGGGCTGGCTGTCTGAGGACAGGTTAAGGCTGGGCCTGCT
Found at i:84854 original size:14 final size:14
Alignment explanation
Indices: 84829--84862 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
84819 AATCGCTCAT
84829 CCGTCC-ACGAATA
1 CCGTCCTACGAATA
84842 CCGTCCTACGAATA
1 CCGTCCTACGAATA
*
84856 CTGTCCT
1 CCGTCCT
84863 CTAGCTTCTG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 6 0.32
14 13 0.68
ACGTcount: A:0.24, C:0.38, G:0.15, T:0.24
Consensus pattern (14 bp):
CCGTCCTACGAATA
Left flanking sequence: Indices 84329 -- 84828
GGATTAAAGCAAGGAAGCAAGAAAAGAGATAAGCGTTAGAGGGAGGTGGGAGGATTCACTCTTGC
TATGCCGCACTCTCATACTTTTGAGTAAGGAATTCCCTGCAAGGCAGTTAACGGCTGTCGGATAG
GGCATCGGGAAGAACATATGGAAAAGAGAACCTGCGAGTACTATTCAGTTAGGATGTGCCCCCCT
GAAATTGTTAGATATTTGCCTTTATGACTCGTCTTCTTTTATAGGGTCTATCCGGGGATACTAAG
CCTGGAATAAGTTTCGATCTATGGCAATTTCTTTGTAGTGGCCAGTTAAAGCTATCAGATATAGG
AGAGACTACCTACTTCAAGTTCAAGGCAGGCTAGCTCAGTACACGATTCCCTTCCTTTAATGTGC
AATTCCCGTCCTTTAAATAGAGCGACTTCCCGCTCTTCTGCCTGTCATCTGTCAACTGGTAACGG
TCGCATCTGTCCAGTAACTGTCCTATAGGCGGTCCAATCGCTCAT
Right flanking sequence: Indices 84863 -- 85362
CTAGCTTCTGTTATGAGTGAATTTCTATGGCCTATTTTATCTAAAAAGAAGCCCTGTGAAAGCGT
CTGTAATGGGGAGCGGTCCATTAACGTTGCTTAATTGGCCTTAGCGTTTCGCACTAAGTAAGCAA
GCTACCTTATTTATGTGCTCTAGTCGAACAAGCAAGCCAGCCTAGCAGAGTAAGCCTTCCCTCTT
CTCTTCACTGGCTCTGATCTCATCAGACTCGTATCCAGCCTCTCTTTCCTCGGTCTCGGTGCTCG
GTCCAGGAGAAGAGAAAGACTCGGATCCAGGGAGGGAAAAATACCGGTATCCCAGCTCCATTTCA
AGCCTAAGCTCTCCCTCCGCTTCTCGATCCCCAGCTTCCGCTGCTAAGCAACCATCTTCTCTCTC
TTCGTCTCCCACTCCTTCTCCCATCACTGGGTATTGGACACCAAGAGGCGGGTACTGAACCCCGA
GAGTGAAGGCGATTCGCCGAAACCACAAGTGTTATCACGTATCTA
Found at i:160233 original size:22 final size:22
Alignment explanation
Indices: 160205--160257 Score: 65
Period size: 22 Copynumber: 2.5 Consensus size: 22
160195 CAACTCGACC
*
160205 GTAGGGA-GAGGGAGAAGCTAGT
1 GTAGGGACGAGGGAG-ACCTAGT
*
160227 GTAGGGACGAGGGTGACCTAGT
1 GTAGGGACGAGGGAGACCTAGT
160249 GTA-GGACGA
1 GTAGGGACGA
160258 TAGTAACCTC
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
21 6 0.21
22 16 0.57
23 6 0.21
ACGTcount: A:0.28, C:0.09, G:0.47, T:0.15
Consensus pattern (22 bp):
GTAGGGACGAGGGAGACCTAGT
Left flanking sequence: Indices 159705 -- 160204
CCCGGCTTTCCGGTAAGGATTTCTCTTCCTTAGCGTTCACATTAAACAATTAAACCTATTCCTAA
AGTGGAAGGCTTCGATCCGTATAGCGCGGGATGATGGATATCTTGAGTTAATAGAGCCAACCAAA
GCTTGCTTACTTAGTGTGTAAAGATTACAGCTCCGGAAGATACCGGGCATCTGTGAAAGCGTCTG
CACTCTCCTCATTCTACTCAGAAGGAGCTCCAATTCCTATTGGTTTTGGCAGAGGCAAGAAAGAA
AGAAGCTAGGCTTCACCCAATCTTCCAATCAAAATCTTACGCCGAGAGGGCAAAAAGCTATAGGG
AAATCGATCGATAGGATTGCATCCCTGGCCATAAACCGTAGAAACGTCCAGAAATGGTCATACAA
TCAATTTAGCTATCTGGACCTAGCTCGATATCAGTAGAAGATAGAGCCGCTAGCTCGACTGGGGA
TGGTTACGTGCTTGTCTGAGAGGAAATGGGCGGGGCAACTCGACC
Right flanking sequence: Indices 160258 -- 160757
TAGTAACCTCCCCTTTTCTTCGTAACGAGTGTTCCCCGAGCAGCGGAGCATTTATGAGTGGATGT
AGCTGTGATAGCTTAGAGTTTCACTGATTGGTATGCCAAAAGACTTTTTATAATATCTTATAAAA
AGAGAGTTACTAAGAGTATTGCTAGAAATTATACGTAAGATAATAGAAGTAAAACTCTTTTGCAG
CTCTGGAGAAGGGGTAGCAAGTCGGAGACTCCCATGGATTGATCTATAACAACTACTGTGCCCGA
AGCGCCTGCATTTAGACCGGTCGCAGTTTAAGGTGAAGGTTCAATTGATCTTGCCTTGTAGGTAG
GCAGCGCCTCGAGAAAGACCATAAACATAAAAAAGAGGAACTCAAGCAGAGGCTGAAAGGCCCTT
TCTCTTTCCTTACCGTCTAGCGATACCATTTACATTTGTAGGAATGCATGGGACTACTTTCTATA
AAGCACTTTAGGTGGCTCTACTACTTCCATAGGCGGCCGGAGGAG
Found at i:160266 original size:21 final size:22
Alignment explanation
Indices: 160222--160266 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 22
160212 GAGGGAGAAG
* *
160222 CTAGTGTAGGGACGAGGGTGAC
1 CTAGTGTAGGGACGAGAGTAAC
*
160244 CTAGTGTA-GGACGATAGTAAC
1 CTAGTGTAGGGACGAGAGTAAC
160265 CT
1 CT
160267 CCCCTTTTCT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
21 12 0.60
22 8 0.40
ACGTcount: A:0.27, C:0.16, G:0.36, T:0.22
Consensus pattern (22 bp):
CTAGTGTAGGGACGAGAGTAAC
Left flanking sequence: Indices 159722 -- 160221
GATTTCTCTTCCTTAGCGTTCACATTAAACAATTAAACCTATTCCTAAAGTGGAAGGCTTCGATC
CGTATAGCGCGGGATGATGGATATCTTGAGTTAATAGAGCCAACCAAAGCTTGCTTACTTAGTGT
GTAAAGATTACAGCTCCGGAAGATACCGGGCATCTGTGAAAGCGTCTGCACTCTCCTCATTCTAC
TCAGAAGGAGCTCCAATTCCTATTGGTTTTGGCAGAGGCAAGAAAGAAAGAAGCTAGGCTTCACC
CAATCTTCCAATCAAAATCTTACGCCGAGAGGGCAAAAAGCTATAGGGAAATCGATCGATAGGAT
TGCATCCCTGGCCATAAACCGTAGAAACGTCCAGAAATGGTCATACAATCAATTTAGCTATCTGG
ACCTAGCTCGATATCAGTAGAAGATAGAGCCGCTAGCTCGACTGGGGATGGTTACGTGCTTGTCT
GAGAGGAAATGGGCGGGGCAACTCGACCGTAGGGAGAGGGAGAAG
Right flanking sequence: Indices 160267 -- 160766
CCCCTTTTCTTCGTAACGAGTGTTCCCCGAGCAGCGGAGCATTTATGAGTGGATGTAGCTGTGAT
AGCTTAGAGTTTCACTGATTGGTATGCCAAAAGACTTTTTATAATATCTTATAAAAAGAGAGTTA
CTAAGAGTATTGCTAGAAATTATACGTAAGATAATAGAAGTAAAACTCTTTTGCAGCTCTGGAGA
AGGGGTAGCAAGTCGGAGACTCCCATGGATTGATCTATAACAACTACTGTGCCCGAAGCGCCTGC
ATTTAGACCGGTCGCAGTTTAAGGTGAAGGTTCAATTGATCTTGCCTTGTAGGTAGGCAGCGCCT
CGAGAAAGACCATAAACATAAAAAAGAGGAACTCAAGCAGAGGCTGAAAGGCCCTTTCTCTTTCC
TTACCGTCTAGCGATACCATTTACATTTGTAGGAATGCATGGGACTACTTTCTATAAAGCACTTT
AGGTGGCTCTACTACTTCCATAGGCGGCCGGAGGAGCTGAATAGG
Found at i:184082 original size:15 final size:15
Alignment explanation
Indices: 184062--184101 Score: 53
Period size: 18 Copynumber: 2.5 Consensus size: 15
184052 AAGGCTAGGG
184062 AAGGCTAGGGCATAA
1 AAGGCTAGGGCATAA
184077 AAGGCTAGTAGGGCATAA
1 AAGGC---TAGGGCATAA
184095 AAGGCTA
1 AAGGCTA
184102 ACAGCTTTTC
Statistics
Matches: 22, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
15 7 0.32
18 15 0.68
ACGTcount: A:0.40, C:0.12, G:0.33, T:0.15
Consensus pattern (15 bp):
AAGGCTAGGGCATAA
Left flanking sequence: Indices 183562 -- 184061
GTGAAGCTTTCGGAGCGTAGTGAGGTGAGCCAGTGCCTGTTGGTGGTCAAGTCCCAGTGGAAGTG
GAAGTTGTTGGGCGTTCAGGTTGCAAAGGAAGTTGGTGGGCTAACGGTGGTCCAGGTAAGGTAGG
TGGGGAAGGCTCGCCACGAGATCGACCGATAGCTTTGACCCAACCCCGGAAGCGGAAGTGCCAGA
GAGACGATCTTTGTGAGGCAGAGTGACATTCCAAGGTCAGGTATAAGGTGCTACGGGAACGATGT
CTCAAAGGTCAGTGCCAAGGGCTCAACGCGGAAGCAATCCGCTGCTCACAGGGACCGTGCGGGCT
GACGCTCTTCTCTCTCAGGCAAAGAAATGTGATTTTAACTTTCGCTGGTTCAAGGTAGGCTGCTT
AAGCAGAGGTTGTTGTTGTTGTTGGCGTGAGTGAAGGCGTTCCTTCCGGTGGGCATGACGAAGCT
AAGCTGGAACTAATTACGAAAGCATAATCGTTTTCAAGGCTAGGG
Right flanking sequence: Indices 184102 -- 184601
ACAGCTTTTCCGAGTCAAAAGCGGCTAAAAACACTCAGCCATAAGTTCCGGTTTCACCACAGTAC
AGGGCTAAATAAAGGGGCTCAAGGTTGGCATGACGAAGCGTCGGGCATCAAAGCTACCGGTTTCA
AAGTTCAGTTCTAACGGGCGTTCGGAAAGGCTTGAAATCGTAACGTACAGGTAGACTTTGCCAAG
GCAAGGAAAGTAGTAAGAAAGATATCGATGGAGCGGGCAGAACCTCGAGTAAGACAACCAACCCT
GGAGGCCATGGCTTGGCTTTATCCCGTAGGTAGTAAGAACAGAGAGAGCCTTCTGTGCTAGCAAT
ACAGAGAGGTGGGGATTGAATGAGGCGAGCGCTGACTGCAGCAAGACCACCAGACCCTAAAAAGA
ATAATAACAACGTTCAGCAAGCCGAAGCCAGCCAGACAGGCACCACCAGATACAGGGCGGGCAGT
TACTCCACCGAATCAGAGGGCAGATACCCGGACCAAAAGGAGTGA
Found at i:184090 original size:18 final size:18
Alignment explanation
Indices: 184067--184101 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
184057 TAGGGAAGGC
184067 TAGGGCATAAAAGGCTAG
1 TAGGGCATAAAAGGCTAG
184085 TAGGGCATAAAAGGCTA
1 TAGGGCATAAAAGGCTA
184102 ACAGCTTTTC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.40, C:0.11, G:0.31, T:0.17
Consensus pattern (18 bp):
TAGGGCATAAAAGGCTAG
Left flanking sequence: Indices 183567 -- 184066
GCTTTCGGAGCGTAGTGAGGTGAGCCAGTGCCTGTTGGTGGTCAAGTCCCAGTGGAAGTGGAAGT
TGTTGGGCGTTCAGGTTGCAAAGGAAGTTGGTGGGCTAACGGTGGTCCAGGTAAGGTAGGTGGGG
AAGGCTCGCCACGAGATCGACCGATAGCTTTGACCCAACCCCGGAAGCGGAAGTGCCAGAGAGAC
GATCTTTGTGAGGCAGAGTGACATTCCAAGGTCAGGTATAAGGTGCTACGGGAACGATGTCTCAA
AGGTCAGTGCCAAGGGCTCAACGCGGAAGCAATCCGCTGCTCACAGGGACCGTGCGGGCTGACGC
TCTTCTCTCTCAGGCAAAGAAATGTGATTTTAACTTTCGCTGGTTCAAGGTAGGCTGCTTAAGCA
GAGGTTGTTGTTGTTGTTGGCGTGAGTGAAGGCGTTCCTTCCGGTGGGCATGACGAAGCTAAGCT
GGAACTAATTACGAAAGCATAATCGTTTTCAAGGCTAGGGAAGGC
Right flanking sequence: Indices 184102 -- 184601
ACAGCTTTTCCGAGTCAAAAGCGGCTAAAAACACTCAGCCATAAGTTCCGGTTTCACCACAGTAC
AGGGCTAAATAAAGGGGCTCAAGGTTGGCATGACGAAGCGTCGGGCATCAAAGCTACCGGTTTCA
AAGTTCAGTTCTAACGGGCGTTCGGAAAGGCTTGAAATCGTAACGTACAGGTAGACTTTGCCAAG
GCAAGGAAAGTAGTAAGAAAGATATCGATGGAGCGGGCAGAACCTCGAGTAAGACAACCAACCCT
GGAGGCCATGGCTTGGCTTTATCCCGTAGGTAGTAAGAACAGAGAGAGCCTTCTGTGCTAGCAAT
ACAGAGAGGTGGGGATTGAATGAGGCGAGCGCTGACTGCAGCAAGACCACCAGACCCTAAAAAGA
ATAATAACAACGTTCAGCAAGCCGAAGCCAGCCAGACAGGCACCACCAGATACAGGGCGGGCAGT
TACTCCACCGAATCAGAGGGCAGATACCCGGACCAAAAGGAGTGA
Found at i:195038 original size:20 final size:20
Alignment explanation
Indices: 195004--195041 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
194994 CTCATAGCTG
195004 CTAGCAACTCCTAGCTACAA
1 CTAGCAACTCCTAGCTACAA
195024 CTAG-AACTCCTTAGCTAC
1 CTAGCAACTCC-TAGCTAC
195042 TAAAACAAGA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 6 0.35
20 11 0.65
ACGTcount: A:0.32, C:0.34, G:0.11, T:0.24
Consensus pattern (20 bp):
CTAGCAACTCCTAGCTACAA
Left flanking sequence: Indices 194504 -- 195003
TCCTGGCTACTCCACCCGGATGGGTGCCACAAACACAGCTTGTACTGGCTAAACATCTCCTATCT
TTCCATTTGAAGGAGTCTATCCCACTGCTTAAGTATGACAAATGTCTGACACTACTATATCGGAC
GTAAAGTCTTGCCCGGCCTCACTGAGTGGATCTGGTGCCCACACCGTAGCTAGTCCTCTTAGCTT
TATTGGAGCAGGTGCCCAAGCTTCTTTGGCTAAAGCACATCTCCTGTCTGAACCCTTGACCTATT
TGAAAGACAAATGCACAAACCCAAATTGAAGAAAGAGATGCTCGAGTCTCTTACGCCATCCTAGG
CGGTTCTCCCGTAGCGTCTCCGCCGGCGACTTTCTAAGGTTCAGGGTTGTCTGCCTATCCTAGGT
GACCATCTTCGTCTACTACAACGAGGGGTGTGTGCCATAGAGTGTGGTACAGGTGTCACCAGTCC
CAGACAGATTTGTTTATGATCTCGTCAACTCGGAACTCATAGCTG
Right flanking sequence: Indices 195042 -- 195541
TAAAACAAGAGCTCTTTCACTCGGGCGACTTTTCTTATTGGGCAAGTTGCCACCCGTTGTTCAAT
ACCCTAACTATAGTAAGTAGCTTAATCTGTCGAGAAGAACCATCCCTACCGGATCGGACATGTAA
CCAGTCTTCTCCGCTTGAGAGGGAAAGACGGCTGCTCTGTGAACAAAACAACCCTAGTTGCTGGT
CCTGCTCCTGCTGCTGTCTGAACTGCCACCTCTGCTCCAATACATAAAGCAGCTCCAGCTTGAAG
CTATTGTAGCAGCTCTGTCCCATTCATCACTGCTTTCTGTTAAAAAGAAAAGAGCTGCTCCTCTC
CGATCTAAGTCCTCTCTCTAGTCAGAAATTGCGTAAGTTAATCAGGATGGATCGACAGGCTTTCC
AAACCTACAGGTCTCTTCCTCGGACCTAGCATTGCTGCCTGGCCCATCACTTCTTCTTTTCTTGA
CTTCGATGATTTGCCTGCAGGAGGATCATCGAAGGTTGGAGAAAA
Found at i:242817 original size:30 final size:30
Alignment explanation
Indices: 242723--242818 Score: 83
Period size: 30 Copynumber: 3.2 Consensus size: 30
242713 AAGTAATCTC
242723 AAGGAATTATTATCGCTTAGCGCTTGTGCT
1 AAGGAATTATTATCGCTTAGCGCTTGTGCT
* * * **
242753 AAGGTAGT-TTACTTGCTTA---CTTGTTAGAGG
1 AAGGAATTATTA-TCGCTTAGCGCTTG-T-G-CT
242783 AAGGAATTATTATCGCTTAGCGCTTGTGCT
1 AAGGAATTATTATCGCTTAGCGCTTGTGCT
242813 AAGGAA
1 AAGGAA
242819 GAGCTTTTAG
Statistics
Matches: 48, Mismatches: 10, Indels: 16
0.65 0.14 0.22
Matches are distributed among these distances:
27 4 0.08
28 1 0.02
29 4 0.08
30 30 0.62
31 4 0.08
32 1 0.02
33 4 0.08
ACGTcount: A:0.26, C:0.14, G:0.25, T:0.35
Consensus pattern (30 bp):
AAGGAATTATTATCGCTTAGCGCTTGTGCT
Left flanking sequence: Indices 242223 -- 242722
CAATTGTAGTACGAATCGCAGTAATTTGAATCCCTTATATATTAAAAAAAAAAGTGAAAGATGGA
GGTAGGTTTTGCCTACCAAAAGAATGGGAAAGGGAAACGAAACATTCTATTTCAAAACGGAGGAA
AAAGATTCTACTACTTTATCTATCCTACTGCGCTTAATCTTCATTCTTTATTAGAAGAGCAAGAA
AGAAGAAACATTTCTATTCTTTGTTACGTTATTTCAATTTCTTGATTTCTATTTCTTTTACGCAA
TCTTGATTTTGATTCTACGTAATCTCTATTCTACGTTATTTGAGAGGTGAAGCAGGTTCTGTTCT
GAGCCAGAAGTAGTCTCTTAGTTTTCGTATGAATAGATTGGGTCATAGCAAGGTGAACCAAATTG
ATCGAAAACATAGCCCGACCCGCGTATGTTAAGCATATAGCTAATCCTTCTTAACGCTTAGCTAC
TGCGTATAAGCTTCACCCAGCTCTTACAAGAAAGTAAGTAATCTC
Right flanking sequence: Indices 242819 -- 243318
GAGCTTTTAGGGAAAGATTATTGGGCTAGGGTGCTTGAGCAATTTGCCATTCTTCCAATTCAACG
ACTAGGCGTATGCTCAGAACGAGCAAACTGGAGGAAAGCTGGGATTGTGAATGAAAACAACCGTC
AGCTGCCCGAGAGAGCTCATTTCATTCAGGGATTGCCTCAAGAGAGGACTTCAAAGGCTTGGCTT
GAGGTTGCGTCTGCTGCTTGAGATGGAAGGTCTTCCGTAGCTTGGTTGCTTAGCCGTCAATCGTC
GTTCGAGAGGTCAGTAAGGTTTGGGACCTTCTGGCAGCTAAAAGCAAATTTCTTATTAAAGAAAG
ATGGCCGTCTAATAGATTTCCTTCTATCTTGCTGTTGTTCACTGTAAGGTAAGAATAGATTATAC
CGGGTATGAATGTATTAGATTGGGCAGTAAGGGTCGGAGAAGGGCAATCACTCATTCTTAAAACC
AGCGTTCTTAAGACCAAAGAGTCGGGCGGAAAAGGGGGTAAACTC
Found at i:264872 original size:18 final size:18
Alignment explanation
Indices: 264851--264893 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
264841 CAACCTTGTT
264851 GACTATGACAACAG-TCGC
1 GACTATGA-AACAGATCGC
264869 GACTAT-AAACAGACTCGC
1 GACTATGAAACAGA-TCGC
264887 GACTATG
1 GACTATG
264894 GCAGGGCGGT
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
16 5 0.23
17 1 0.05
18 16 0.73
ACGTcount: A:0.35, C:0.26, G:0.21, T:0.19
Consensus pattern (18 bp):
GACTATGAAACAGATCGC
Left flanking sequence: Indices 264351 -- 264850
TACCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTCGGA
GACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTAC
CTTAGGACAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTTCCATTCAAAGCTTATAACACTTCT
CCTTCCGACCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCACTTAGCAGAGT
CCTGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCCTAATCAAAAGATAGGA
GAGCACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCTTCGACATGGTTCTCTCAAG
CGCCCTAGTATACTCTACTTGTTCACCTGTGTCGGTTTGGGGTACGGTCAGTTCACCGGGAGGAT
CGCCCTCCCAATTCGAAGTTTTTTCCTGGAAGTTTCAACCTTGTT
Right flanking sequence: Indices 264894 -- 265393
GCAGGGCGGTACGCTCTGCTCTCTCGCGACCCCTACTCTAATCAAAAGACTAAAGGCCCCTTAGG
TCGCCAAACTACGACGAGAGTTTCGCCTTTTGAAGCGCCAGTCGCATAGGGCGACCGGGCCAGGC
CGAGTCAGAAAGGCTTTGATGACTCAAGGTTCATATTAGGGAAAGGAGAGTGAGGGGAAGAGGGG
GCAGCCCTCGGCCCGATCATCCAATTCGCTCCAACAGATAGGCATGGTTCTGTAGTCAAAGCAAC
TTCGTCACTTTCGTGTACCCATCGGACGGCAGCCCTTTCGGGGGTTCCTTAGGGACCGATTCACT
CTGCGTAGATTGACTGAACGCAGAAAGCCTTCCACTGGCAGGCGATCGTGTTTTTCACAGGATTT
CTCGTTACTCATGTCAGCATTCTCACTTCTGATATCTCCAGGTGTTGTCACCAAAAACCTTCCCC
GATTGACAGAACGTTCCGCTACTGACACTTGAAAAAGAAGCTTTC
Found at i:274394 original size:17 final size:17
Alignment explanation
Indices: 274372--274408 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
274362 GCACAGATTC
274372 CCTATAAAGAAAAATTT
1 CCTATAAAGAAAAATTT
* *
274389 CCTATAAAGACAGATTT
1 CCTATAAAGAAAAATTT
274406 CCT
1 CCT
274409 CTCTTCCCGA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.43, C:0.19, G:0.08, T:0.30
Consensus pattern (17 bp):
CCTATAAAGAAAAATTT
Left flanking sequence: Indices 273872 -- 274371
ACTCCTAGTAGGCCACGAACTCCCTTTCAAGCTTTAACCGACCCGAATCAAATCCAGATGCCTCA
CCAGATAGTTCTCCTTTCATCTGTCCGATCAGGCAGCCAATTCTATGCCACTAAAGCTTCATGCC
ATTGAAGACTGGTCCCGAAAGCGATTAGAAAGCGAACTAGGATCTGCAAGATTCTACTTTGATCC
GCCTATGAACCTTGGTTCACGCTCTACGTATCTTATTCTTTCAAGCTTTCTCGAGTCACCCTAAC
GTAACGGCTAAGAGAACTTGGCTAACTTCGATCAATTCCACGACTTTCCATCCTTCTTGTGTTGT
GGGATGTGAGTCATCAGTTCTTTCCTCCGCCTGATAGTTTATTCTCGAGGATCACTGAACTTGGC
TTACTTCTTACTGAATGCCGTACTTAGCACTCGGGGCGAGCTCTTAGCGATTAGTCAGTCCGGGT
CCAGCTAGTCTTGCACTTTCAGACCCAAACAAAGGGCACAGATTC
Right flanking sequence: Indices 274409 -- 274908
CTCTTCCCGAATGCTTTCCTTAGCTAATACTGATTGATTCACCGCATCTTCTCCATTAGGAGATC
TAACCAAGCACTCGAAATGCGACATTGACTAAAGAAGGTAGACAAAAAGGCAAACTAGAGAAAAA
GCCAAGCTGACTGAATTGAATCTTTCAGTGGAATTGGGGCTTACCTTATATCATATCCTCTCTCT
TTCAAGCACAGTTGAATGAAAAAAGCGTACCTTCGAAGGCATGATTGCTGCGATCAAGAGCTGCT
TAACATCATTGAGAACAGGAGCTCAGAAGATTTGGTGGAGGATAAAAAGTGAACCAACACTGGGA
TCCGATCATAGCCGCAGTGAAGTGTTGGGATGCAAAGACGATGGTTTTTAGATTCGGCAAACATG
AGATGTGTCCCACACTTGAAGAAGTACATCGAATTTTGGAGATATCCCGTAAATTCCTTTTTGTA
CCTAGAGAAGGACGACCGAGAAAAAAAGGCTTCGCGTTCTCCAAG
Found at i:336626 original size:17 final size:17
Alignment explanation
Indices: 336604--336638 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
336594 ATCATCTCTT
336604 TCAAGAAGCCAACTCAA
1 TCAAGAAGCCAACTCAA
336621 TCAAGAAGCCAACTCAA
1 TCAAGAAGCCAACTCAA
336638 T
1 T
336639 AGCTTCTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.46, C:0.29, G:0.11, T:0.14
Consensus pattern (17 bp):
TCAAGAAGCCAACTCAA
Left flanking sequence: Indices 336104 -- 336603
TGCGCTCTCACTAGACTTTTTATTTTATGTCTACGCCGCCTCGATTCACTCAGATTTAATGGTTT
GGTAACCTGCAACATCTTTGGTTCGGCTAGCTTTCATTTTTTTGATCGAAGTCGGTTGTCTTATT
AATCGATTGGAACTCGTAGCTCCAACTATGTATTCCCACTGCCCTGACATGGACAACTTCGCTTT
TACCTAGGTTTATTCACGAAGCATAGGGCATACTTTCTATATAATTTATGCTTTCGTCCAGCCGG
AATCTTAACTGGACGTCTATTGAAAAGGACGGTAAATTGAGAAAAAAAGCATTTCATTAAAAAAA
AGAGTGGATTCTTGAGGTTACATTCCGCTATAGTAGCTTGACCAACGTGAAAGTGGAACAAGTGC
ATGCCCCATACACGAAATTTAATATTAGAGTATAAATCTCATATCGGTATGAGGCTTCCAGTCGA
ATATCTGACTCCGCCTATCACTTTATTCTGCTTCCATCATCTCTT
Right flanking sequence: Indices 336639 -- 337138
AGCTTCTTTTAGAACCGCTATGCCCTCTGCTGCAACTGAGCTAGTTATTGGGAACAGATGGGGAC
TACAAGCGAAGCTTCGCTTGCTTATACCACGTAATTCAACCTCAACAGGAAGGCAAATGGTAAGA
TCCGGGTAAGAGGTTTCGCAGATCTGCTTATTACTGTACCAAACAACAAGACGAAAGCGTCAAAG
GCGAAGCCATGGCGTCACACAATTATCATACAAAATTCTCATTAAGCCACTGTGAGAGAAGGTTG
CTGATCGACGATAATAGGTAGCTTGCAACTATAACATAAAGTGGACGAGCTGACTCAGTGGAGCC
TAAAAATAGCACAAGGTAGTACTAGAAATGATATACAGATGAGATCAAAGGATGGATACACGCAC
GGAGGGAACCAGAACCGGGATAAGCCGCCCTTATTGGGCGCGGTAGAAGCTTACTCTGTAGTTGG
TCTGAAGGAGGTGTTCCACTTCTCACCATCGATTATGATTCGTAT
Found at i:394810 original size:14 final size:14
Alignment explanation
Indices: 394785--394818 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
394775 AATCGCTCAT
394785 CCGTCC-ACGAATA
1 CCGTCCTACGAATA
394798 CCGTCCTACGAATA
1 CCGTCCTACGAATA
*
394812 CTGTCCT
1 CCGTCCT
394819 CTAGCTTCTG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 6 0.32
14 13 0.68
ACGTcount: A:0.24, C:0.38, G:0.15, T:0.24
Consensus pattern (14 bp):
CCGTCCTACGAATA
Left flanking sequence: Indices 394285 -- 394784
TGGATTAAAGCAAGGAAGCAAGAAAAGAGATAAGCGTTAGAGGGAGGTGGGAGGATTCACTCTTG
CTATGCCGCACTCTCATACTTTTGAGTAAGGAATTCCCTGCAAGGCAGTTAACGGCTGTCGGATA
GGGCATCGGGAAGAACATATGGAAAAGAGAACCTGCGAGTACTATTCAGTTAGGATGTGCCCCCC
TGAAATTGTTAGATATTTGCCTTTATGACTCGTCTTCTTTTATAGGGTCTATCCGGGGATACTAA
GCCTGGAATAAGTTTCGATCTATGGCAATTTCTTTGTAGTGGCCAGTTAAAGCTATCAGATATAG
GAGAGACTACCTACTTCAAGTTCAAGGCAGGCTAGCTCAGTACACGATTCCCTTCCTTTAATGTG
CAATTCCGTCCTTTAAATAGAGCGACTTCCCGCTCTTCTGCCTGTCATCTGTCAACTGGTAACGG
TCGCATCTGTCCAGTAACTGTCCTATAGGCGGTCCAATCGCTCAT
Right flanking sequence: Indices 394819 -- 395318
CTAGCTTCTGTTATGAGTGAATTTCTATGGCCTATTTTATCTAAAAAGAAGCCCTGTGAAAGCGT
CTGTAATGGGGAGCGGTCCATTAACGTTGCTTAATTGGCCTTAGCGTTTCGCACTAAGTAAGCAA
GCTACCTTATTTATGTGCTCTAGTCGAACAAGCAAGCCAGCCTAGCAGAGTAAGCCTTCCCTCTT
CTCTTCACTGGCTCTGATCTCATCAGACTCGTATCCAGCCTCTCTTTCCTCGGTCTCGGTGCTCG
GTCCAGGAGAAGAGAAAGACTCGGATCCAGGGAGGGAAAAATACCGGTATCCCAGCTCCATTTCA
AGCCTAAGCTCTCCCTCCGCTTCTCGATCCCCAGCTTCCGCTGCTAAGCAACCATCTTCTCTCTC
TTCGTCTCCCACTCCTTCTCCCATCACTGGGTATTGGACACCAAGAGGCGGGTACTGAACCCCGA
GAGTGAAGGCGATTCGCCGAAACCACAAGTGTTATCACGTATCTA
Found at i:432079 original size:21 final size:20
Alignment explanation
Indices: 432050--432091 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
432040 CAAAGATTGC
*
432050 CCACTTCACTTCGCTTCACTT
1 CCACCTCACTTCG-TTCACTT
*
432071 CCACCTCACTTCGTTTACTT
1 CCACCTCACTTCGTTCACTT
432091 C
1 C
432092 GTAACCTCAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 7 0.37
21 12 0.63
ACGTcount: A:0.14, C:0.43, G:0.05, T:0.38
Consensus pattern (20 bp):
CCACCTCACTTCGTTCACTT
Left flanking sequence: Indices 431550 -- 432049
CAGCCTCGTGAATACAACCGTTAGGCTGCGAAGCAGATCTTGTGCAATCAATAAAAAAAAAAGAA
TGAAGGAGCGGAACCTTCCTCTGACTCACTTCGGTGGCAGGAGATTCCGGAATTACTACGCAAGA
TAAGGGGACTCTGTCAAAGAGGCACACTCATCTCGATGGCTTGACGGAACACGGCCGCACACCCC
TTTGTTGTCAACGCGACTGAAACGAAAGAGTGGCGCCTCGGCCACTGCTTTGTATTGAAAGTGGT
GCTCCTCGTCATGCTTGCCGTGGGAGGGGATGATTACAAACCATCCCTCTTGCCAGTCCCCGTCT
CCCTGACTCGTCCGGGGATCCCTCGTATCATTCCGTCATTTCACAGATGTAGGGTCCGTAAGGGC
GACGAAAGGTAGGATGCCCCTGTTTGGCTTTTGTTTTCCAAACAGGGTTTGCCGCTAAGCCAACC
CTCCATATCTGGACGCTGGTTCAAGTCAACAGTGGCAAAGATTGC
Right flanking sequence: Indices 432092 -- 432591
GTAACCTCATGTTTACACAAAATGTTGTTGTTAAGGAATTCCCACTATGGTCTCGAGAGAACAAT
CCTAACCCAAAGCTTGGAAAACAGTTCATAATCCTGCCTTCGATCTCCGCAAGCGGAGGGTTTCG
CACTCAACCAGCGGGAGATTGCTCGACCATACCATTAGGGAGAGGGGATTGAGACGATCTTGAGC
GTCAGGCGAAGCCGAGACACATCCATACTAGAAGCCATTCGAACTTCCAGCAAAAGGACTCGGGG
GTGACCTAACCGAGTCCATCTTGTTCCCCCGTACCATCCCAATGTGATTAAGATCAATCCGAAGC
CCAGACGTTTCGAGCTCTGTCTCGATCAGATGCATCAGAGGCGCCAAAGGCGTGAGGGGAGGCTT
GAAAAACTGCCGGAATGGTCCTACGGGTATCTTTTCCCATCGGAGGTAGTGCCCAACGGGAGAAG
GGGCCGAAATGGGGTTTCTATTACCAGAAAGCGTCCATTCAGATG
Found at i:437242 original size:30 final size:30
Alignment explanation
Indices: 437206--437317 Score: 127
Period size: 30 Copynumber: 3.5 Consensus size: 30
437196 GACTCAAGCG
437206 ATTTTAATAGCTTTTCCTTTTCTAGTTGTA
1 ATTTTAATAGCTTTTCCTTTTCTAGTTGTA
*
437236 ATTTTAATAGCTTTTCCTTTTCGAGTTGTA
1 ATTTTAATAGCTTTTCCTTTTCTAGTTGTA
**
437266 ATTCTATTTCTA-CTTTTAATTCCTTTTCTAGTTGTA
1 A-T-T-TTAATAGC--TT--TTCCTTTTCTAGTTGTA
437302 ATTTTAATAGCTTTTC
1 ATTTTAATAGCTTTTC
437318 TAGTTTTAAT
Statistics
Matches: 68, Mismatches: 6, Indels: 16
0.76 0.07 0.18
Matches are distributed among these distances:
30 33 0.49
31 1 0.01
32 4 0.06
33 8 0.12
34 4 0.06
35 1 0.01
36 17 0.25
ACGTcount: A:0.21, C:0.14, G:0.09, T:0.56
Consensus pattern (30 bp):
ATTTTAATAGCTTTTCCTTTTCTAGTTGTA
Left flanking sequence: Indices 436706 -- 437205
GCGGGATTGGATTTTTTTTATAGTGGAAATGCCATAAAGCGCGAACCAAGATCCGTGATACGAAA
ACCAAAATCAGAATGAGGAAGAAAAAGATATCGTGATGTAAGTCCATTATTCCTTGCATCATAGG
TGTTGCTGCGTCTTGAAATCCTAATTGCCATGGTTCCGCTGCATCACAAGGAACAATTGTGAGGA
ATAGCCATTCTAGAACAATCATTTGGGTTGGTTCATTCTTTAACTGCTCCGCCCCCCCCAAAAAA
AAGAAGAGAGACTTGTTCTTGCTCTCCCAATTCAGGAAGACGGAAGTCGCCGGTTGGGCTTTTCC
AACCAAGAAAAACATGGGACTTTTGGGCATTTTCTTCTCTTACGCTACGCAATTTCTATTTATTA
TTTTTGAATAGAAATCTAACTTTATATTAGATATTTGGAAGGGATATTTCTATTCGAGATGCTAC
TTACTTACATATGATGTTTTCTTTCACAAGGCAGCGACTCAAGCG
Right flanking sequence: Indices 437318 -- 437817
TAGTTTTAATAGCTTTTCCTTTTCTAGTTGCTTTTCCTTTTCGAGTTGTAATTCTATTTCTACTT
GTAATAGCAAAATCTGTTCCTGGGTCATAAAATTGGGATTTACGTCATTTTGATTCCCTCCAGAA
AAGCAAGTTTTTCTTACCTTCCTGTACGAGTAGTGAAGAATTATAGTGAGTTGTGGTTGGTTGTT
GACCAACGGAAAGCATGGGAGTCTTTGGGCATAGGAGGTTCTCTCTCTCTCTTACGATATAAATA
AGTCCGGGAATGAGCTATCATATGCCTTCTGTTTGAAAGGCTAATTTCCTTTTACTCAATGAAGA
AAGCTAAAACTAAAAGAGTAGGACATAGATTGTATTATAAAAGTTTAATGAGAGATGCGAATCAT
AGCGTATCCAAAGTAGTACTTCTGTTTTGTTTTCAAGGCAATTAAATTCTTACTGTCCGGTAAGG
CAAGGAAAGGCTTTTTCCCCTAAGGGCGAACTTAACCGGGCATGG
Found at i:437284 original size:42 final size:42
Alignment explanation
Indices: 437237--437347 Score: 102
Period size: 42 Copynumber: 2.6 Consensus size: 42
437227 CTAGTTGTAA
*
437237 TTTTAATAGCTTTTCCTTTTCGAGTTGTAAT-TCTATTTCTAC
1 TTTTAATAGCTTTTCCTTTTCGAGTTGTAATAGCT-TTTCTAC
** * * * *
437279 TTTTAATTCCTTTT-CTAGTT-GTAATTTTAATAGCTTTTCTAG
1 TTTTAATAGCTTTTCCT-TTTCG-AGTTGTAATAGCTTTTCTAC
*
437321 TTTTAATAGCTTTTCCTTTTCTAGTTG
1 TTTTAATAGCTTTTCCTTTTCGAGTTG
437348 CTTTTCCTTT
Statistics
Matches: 51, Mismatches: 13, Indels: 10
0.69 0.18 0.14
Matches are distributed among these distances:
41 3 0.06
42 44 0.86
43 4 0.08
ACGTcount: A:0.19, C:0.14, G:0.10, T:0.57
Consensus pattern (42 bp):
TTTTAATAGCTTTTCCTTTTCGAGTTGTAATAGCTTTTCTAC
Left flanking sequence: Indices 436737 -- 437236
CCATAAAGCGCGAACCAAGATCCGTGATACGAAAACCAAAATCAGAATGAGGAAGAAAAAGATAT
CGTGATGTAAGTCCATTATTCCTTGCATCATAGGTGTTGCTGCGTCTTGAAATCCTAATTGCCAT
GGTTCCGCTGCATCACAAGGAACAATTGTGAGGAATAGCCATTCTAGAACAATCATTTGGGTTGG
TTCATTCTTTAACTGCTCCGCCCCCCCCAAAAAAAAGAAGAGAGACTTGTTCTTGCTCTCCCAAT
TCAGGAAGACGGAAGTCGCCGGTTGGGCTTTTCCAACCAAGAAAAACATGGGACTTTTGGGCATT
TTCTTCTCTTACGCTACGCAATTTCTATTTATTATTTTTGAATAGAAATCTAACTTTATATTAGA
TATTTGGAAGGGATATTTCTATTCGAGATGCTACTTACTTACATATGATGTTTTCTTTCACAAGG
CAGCGACTCAAGCGATTTTAATAGCTTTTCCTTTTCTAGTTGTAA
Right flanking sequence: Indices 437348 -- 437847
CTTTTCCTTTTCGAGTTGTAATTCTATTTCTACTTGTAATAGCAAAATCTGTTCCTGGGTCATAA
AATTGGGATTTACGTCATTTTGATTCCCTCCAGAAAAGCAAGTTTTTCTTACCTTCCTGTACGAG
TAGTGAAGAATTATAGTGAGTTGTGGTTGGTTGTTGACCAACGGAAAGCATGGGAGTCTTTGGGC
ATAGGAGGTTCTCTCTCTCTCTTACGATATAAATAAGTCCGGGAATGAGCTATCATATGCCTTCT
GTTTGAAAGGCTAATTTCCTTTTACTCAATGAAGAAAGCTAAAACTAAAAGAGTAGGACATAGAT
TGTATTATAAAAGTTTAATGAGAGATGCGAATCATAGCGTATCCAAAGTAGTACTTCTGTTTTGT
TTTCAAGGCAATTAAATTCTTACTGTCCGGTAAGGCAAGGAAAGGCTTTTTCCCCTAAGGGCGAA
CTTAACCGGGCATGGAAGGCAACTCTATCAAGTAAAGCTAGTCGT
Found at i:437293 original size:18 final size:18
Alignment explanation
Indices: 437249--437304 Score: 60
Period size: 18 Copynumber: 3.1 Consensus size: 18
437239 TTAATAGCTT
* *
437249 TTCCTTTTCGAGTTGTAA
1 TTCCTTTTCTACTTGTAA
*
437267 TT-CTATTTCTACTTTTAA
1 TTCCT-TTTCTACTTGTAA
*
437285 TTCCTTTTCTAGTTGTAA
1 TTCCTTTTCTACTTGTAA
437303 TT
1 TT
437305 TTAATAGCTT
Statistics
Matches: 31, Mismatches: 5, Indels: 4
0.77 0.12 0.10
Matches are distributed among these distances:
17 2 0.06
18 27 0.87
19 2 0.06
ACGTcount: A:0.18, C:0.16, G:0.09, T:0.57
Consensus pattern (18 bp):
TTCCTTTTCTACTTGTAA
Left flanking sequence: Indices 436749 -- 437248
AACCAAGATCCGTGATACGAAAACCAAAATCAGAATGAGGAAGAAAAAGATATCGTGATGTAAGT
CCATTATTCCTTGCATCATAGGTGTTGCTGCGTCTTGAAATCCTAATTGCCATGGTTCCGCTGCA
TCACAAGGAACAATTGTGAGGAATAGCCATTCTAGAACAATCATTTGGGTTGGTTCATTCTTTAA
CTGCTCCGCCCCCCCCAAAAAAAAGAAGAGAGACTTGTTCTTGCTCTCCCAATTCAGGAAGACGG
AAGTCGCCGGTTGGGCTTTTCCAACCAAGAAAAACATGGGACTTTTGGGCATTTTCTTCTCTTAC
GCTACGCAATTTCTATTTATTATTTTTGAATAGAAATCTAACTTTATATTAGATATTTGGAAGGG
ATATTTCTATTCGAGATGCTACTTACTTACATATGATGTTTTCTTTCACAAGGCAGCGACTCAAG
CGATTTTAATAGCTTTTCCTTTTCTAGTTGTAATTTTAATAGCTT
Right flanking sequence: Indices 437305 -- 437804
TTAATAGCTTTTCTAGTTTTAATAGCTTTTCCTTTTCTAGTTGCTTTTCCTTTTCGAGTTGTAAT
TCTATTTCTACTTGTAATAGCAAAATCTGTTCCTGGGTCATAAAATTGGGATTTACGTCATTTTG
ATTCCCTCCAGAAAAGCAAGTTTTTCTTACCTTCCTGTACGAGTAGTGAAGAATTATAGTGAGTT
GTGGTTGGTTGTTGACCAACGGAAAGCATGGGAGTCTTTGGGCATAGGAGGTTCTCTCTCTCTCT
TACGATATAAATAAGTCCGGGAATGAGCTATCATATGCCTTCTGTTTGAAAGGCTAATTTCCTTT
TACTCAATGAAGAAAGCTAAAACTAAAAGAGTAGGACATAGATTGTATTATAAAAGTTTAATGAG
AGATGCGAATCATAGCGTATCCAAAGTAGTACTTCTGTTTTGTTTTCAAGGCAATTAAATTCTTA
CTGTCCGGTAAGGCAAGGAAAGGCTTTTTCCCCTAAGGGCGAACT
Found at i:437294 original size:24 final size:24
Alignment explanation
Indices: 437267--437327 Score: 68
Period size: 24 Copynumber: 2.5 Consensus size: 24
437257 CGAGTTGTAA
* * *
437267 TTCTATTTCTACTTTTAATTCCTT
1 TTCTAGTTCTAATTTTAATACCTT
* *
437291 TTCTAGTTGTAATTTTAATAGCTT
1 TTCTAGTTCTAATTTTAATACCTT
*
437315 TTCTAGTTTTAAT
1 TTCTAGTTCTAAT
437328 AGCTTTTCCT
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.21, C:0.13, G:0.07, T:0.59
Consensus pattern (24 bp):
TTCTAGTTCTAATTTTAATACCTT
Left flanking sequence: Indices 436767 -- 437266
GAAAACCAAAATCAGAATGAGGAAGAAAAAGATATCGTGATGTAAGTCCATTATTCCTTGCATCA
TAGGTGTTGCTGCGTCTTGAAATCCTAATTGCCATGGTTCCGCTGCATCACAAGGAACAATTGTG
AGGAATAGCCATTCTAGAACAATCATTTGGGTTGGTTCATTCTTTAACTGCTCCGCCCCCCCCAA
AAAAAAGAAGAGAGACTTGTTCTTGCTCTCCCAATTCAGGAAGACGGAAGTCGCCGGTTGGGCTT
TTCCAACCAAGAAAAACATGGGACTTTTGGGCATTTTCTTCTCTTACGCTACGCAATTTCTATTT
ATTATTTTTGAATAGAAATCTAACTTTATATTAGATATTTGGAAGGGATATTTCTATTCGAGATG
CTACTTACTTACATATGATGTTTTCTTTCACAAGGCAGCGACTCAAGCGATTTTAATAGCTTTTC
CTTTTCTAGTTGTAATTTTAATAGCTTTTCCTTTTCGAGTTGTAA
Right flanking sequence: Indices 437328 -- 437827
AGCTTTTCCTTTTCTAGTTGCTTTTCCTTTTCGAGTTGTAATTCTATTTCTACTTGTAATAGCAA
AATCTGTTCCTGGGTCATAAAATTGGGATTTACGTCATTTTGATTCCCTCCAGAAAAGCAAGTTT
TTCTTACCTTCCTGTACGAGTAGTGAAGAATTATAGTGAGTTGTGGTTGGTTGTTGACCAACGGA
AAGCATGGGAGTCTTTGGGCATAGGAGGTTCTCTCTCTCTCTTACGATATAAATAAGTCCGGGAA
TGAGCTATCATATGCCTTCTGTTTGAAAGGCTAATTTCCTTTTACTCAATGAAGAAAGCTAAAAC
TAAAAGAGTAGGACATAGATTGTATTATAAAAGTTTAATGAGAGATGCGAATCATAGCGTATCCA
AAGTAGTACTTCTGTTTTGTTTTCAAGGCAATTAAATTCTTACTGTCCGGTAAGGCAAGGAAAGG
CTTTTTCCCCTAAGGGCGAACTTAACCGGGCATGGAAGGCAACTC
Found at i:437342 original size:66 final size:64
Alignment explanation
Indices: 437216--437370 Score: 156
Period size: 66 Copynumber: 2.4 Consensus size: 64
437206 ATTTTAATAG
* *
437216 CTTTTCCTTTTCTAGTTGTAATTTTAATAGCTTTTCCTTTTCGAGTTGTAATTCTATTTCTACTT
1 CTTTTCCTTTTCTAGTTGTAATTTTAATAGCTTTTCCTTTTAGAGTTGT-ATCCTATTTCTACTT
* *
437281 -TTAATTCCTTTTCTAGTTGTAATTTTAATAGCTTTTCTAGTTTTAATAGCTT-T-TCCT-TTTC
1 CTT--TTCCTTTTCTAGTTGTAATTTTAATAGCTTTTC--CTTTT-AGAG-TTGTATCCTATTTC
*
437342 TAGTT
60 TACTT
*
437347 GCTTTTCCTTTTCGAGTTGTAATT
1 -CTTTTCCTTTTCTAGTTGTAATT
437371 CTATTTCTAC
Statistics
Matches: 76, Mismatches: 6, Indels: 15
0.78 0.06 0.15
Matches are distributed among these distances:
64 2 0.03
66 60 0.79
67 3 0.04
68 6 0.08
69 3 0.04
70 2 0.03
ACGTcount: A:0.17, C:0.15, G:0.10, T:0.57
Consensus pattern (64 bp):
CTTTTCCTTTTCTAGTTGTAATTTTAATAGCTTTTCCTTTTAGAGTTGTATCCTATTTCTACTT
Left flanking sequence: Indices 436716 -- 437215
ATTTTTTTTATAGTGGAAATGCCATAAAGCGCGAACCAAGATCCGTGATACGAAAACCAAAATCA
GAATGAGGAAGAAAAAGATATCGTGATGTAAGTCCATTATTCCTTGCATCATAGGTGTTGCTGCG
TCTTGAAATCCTAATTGCCATGGTTCCGCTGCATCACAAGGAACAATTGTGAGGAATAGCCATTC
TAGAACAATCATTTGGGTTGGTTCATTCTTTAACTGCTCCGCCCCCCCCAAAAAAAAGAAGAGAG
ACTTGTTCTTGCTCTCCCAATTCAGGAAGACGGAAGTCGCCGGTTGGGCTTTTCCAACCAAGAAA
AACATGGGACTTTTGGGCATTTTCTTCTCTTACGCTACGCAATTTCTATTTATTATTTTTGAATA
GAAATCTAACTTTATATTAGATATTTGGAAGGGATATTTCTATTCGAGATGCTACTTACTTACAT
ATGATGTTTTCTTTCACAAGGCAGCGACTCAAGCGATTTTAATAG
Right flanking sequence: Indices 437371 -- 437870
CTATTTCTACTTGTAATAGCAAAATCTGTTCCTGGGTCATAAAATTGGGATTTACGTCATTTTGA
TTCCCTCCAGAAAAGCAAGTTTTTCTTACCTTCCTGTACGAGTAGTGAAGAATTATAGTGAGTTG
TGGTTGGTTGTTGACCAACGGAAAGCATGGGAGTCTTTGGGCATAGGAGGTTCTCTCTCTCTCTT
ACGATATAAATAAGTCCGGGAATGAGCTATCATATGCCTTCTGTTTGAAAGGCTAATTTCCTTTT
ACTCAATGAAGAAAGCTAAAACTAAAAGAGTAGGACATAGATTGTATTATAAAAGTTTAATGAGA
GATGCGAATCATAGCGTATCCAAAGTAGTACTTCTGTTTTGTTTTCAAGGCAATTAAATTCTTAC
TGTCCGGTAAGGCAAGGAAAGGCTTTTTCCCCTAAGGGCGAACTTAACCGGGCATGGAAGGCAAC
TCTATCAAGTAAAGCTAGTCGTCAGTCAGGGTTGAGACAGTAAGG
Found at i:437350 original size:18 final size:18
Alignment explanation
Indices: 437329--437365 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
437319 AGTTTTAATA
*
437329 GCTTTTCCTTTTCTAGTT
1 GCTTTTCCTTTTCGAGTT
437347 GCTTTTCCTTTTCGAGTT
1 GCTTTTCCTTTTCGAGTT
437365 G
1 G
437366 TAATTCTATT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.05, C:0.22, G:0.16, T:0.57
Consensus pattern (18 bp):
GCTTTTCCTTTTCGAGTT
Left flanking sequence: Indices 436829 -- 437328
TCATAGGTGTTGCTGCGTCTTGAAATCCTAATTGCCATGGTTCCGCTGCATCACAAGGAACAATT
GTGAGGAATAGCCATTCTAGAACAATCATTTGGGTTGGTTCATTCTTTAACTGCTCCGCCCCCCC
CAAAAAAAAGAAGAGAGACTTGTTCTTGCTCTCCCAATTCAGGAAGACGGAAGTCGCCGGTTGGG
CTTTTCCAACCAAGAAAAACATGGGACTTTTGGGCATTTTCTTCTCTTACGCTACGCAATTTCTA
TTTATTATTTTTGAATAGAAATCTAACTTTATATTAGATATTTGGAAGGGATATTTCTATTCGAG
ATGCTACTTACTTACATATGATGTTTTCTTTCACAAGGCAGCGACTCAAGCGATTTTAATAGCTT
TTCCTTTTCTAGTTGTAATTTTAATAGCTTTTCCTTTTCGAGTTGTAATTCTATTTCTACTTTTA
ATTCCTTTTCTAGTTGTAATTTTAATAGCTTTTCTAGTTTTAATA
Right flanking sequence: Indices 437366 -- 437865
TAATTCTATTTCTACTTGTAATAGCAAAATCTGTTCCTGGGTCATAAAATTGGGATTTACGTCAT
TTTGATTCCCTCCAGAAAAGCAAGTTTTTCTTACCTTCCTGTACGAGTAGTGAAGAATTATAGTG
AGTTGTGGTTGGTTGTTGACCAACGGAAAGCATGGGAGTCTTTGGGCATAGGAGGTTCTCTCTCT
CTCTTACGATATAAATAAGTCCGGGAATGAGCTATCATATGCCTTCTGTTTGAAAGGCTAATTTC
CTTTTACTCAATGAAGAAAGCTAAAACTAAAAGAGTAGGACATAGATTGTATTATAAAAGTTTAA
TGAGAGATGCGAATCATAGCGTATCCAAAGTAGTACTTCTGTTTTGTTTTCAAGGCAATTAAATT
CTTACTGTCCGGTAAGGCAAGGAAAGGCTTTTTCCCCTAAGGGCGAACTTAACCGGGCATGGAAG
GCAACTCTATCAAGTAAAGCTAGTCGTCAGTCAGGGTTGAGACAG
Found at i:453738 original size:13 final size:13
Alignment explanation
Indices: 453720--453745 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
453710 CAGGCCTCTC
453720 CTTATTCATTCTA
1 CTTATTCATTCTA
453733 CTTATTCATTCTA
1 CTTATTCATTCTA
453746 TAGGGCGGGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.23, G:0.00, T:0.54
Consensus pattern (13 bp):
CTTATTCATTCTA
Left flanking sequence: Indices 453220 -- 453719
CCTCACTGACCTGAGCAATTTCGATCACCTAGCAGGCCTTAAATTTGGTAGGTAACATCGCCGAA
GCGTATCATCTGATTTTACTACGAAGGAAGGAACTCGAAGTGAGACGGCGCCGTCTTGTCCAACG
CAACGATATGGCCCTCTATCATCTTCTATCTGGTAGACTTGGAAAAGGGGCCCCGACTTTTTTCC
AGAATTAGAGTTCGACCGCGGCTGCCCCCTTTTTTTTCCGCACCAATCCTTATTTTTTACTATAT
ATTTTGGGGGTGTATAGCTCAGTTGGTAGAGCATTGGGCTTTTAACCTAATGGTCGCAGGTTCAA
GTCCTGCTATACCCAAACCTACCTTACACTATACTATTAGTAAGGATGCGTAGTAGCGTTCAAAG
ATCACTCTTTGGCCTTTAGACTCGCTTCAGCGACTTCGCCCTTTAAGTGACAAGGGGGGGGGTGA
GGTAAGGAGTAGTATAAGAGTGGCTCGGTCATCAACAGGCCTCTC
Right flanking sequence: Indices 453746 -- 454245
TAGGGCGGGGCTGCGGACCAACAATTCAGCAAAAGGGCTTAAAAGCTCCTTTATCAAACCTTCCC
CTTTGAATAATAATAAGGTAAGCTTGGGTTCCAAACTATATGCGGTCTCGCCATTCTTTGTTTGC
ATTCAAAGGTCTTGTGCCTGCGCTATCGAGTCACGTGCCTAACTTCCAAAGAATGAATCATATGG
TAGAGGAGCTAAAGTGGCCGGCGGCGGTGTAGAGCTATAAGGAGCGAAGCTCACACACACCGGCT
GATGGAGGGCGGGATCGCATTCACTTGCTTGCGGCCCGGCTCCATAATAGTGGAAAGCGGGCGCG
CCCCCATAACCACACGGGAGGGTAACGAGATTCAACGGGATGGTCACGCTTTTCGAGAACGGTTT
TTCCCTCATAAAGCAGGTTCCGTGAGTCAAAAGACCCTAAACAAGGCAAGCCGAAAAGATTCTTT
TTCTCTTCCGCACATCGATGTTCTGGTGGACAACACCGCTGGACA
Done.