123.fas.2.7.7.80.10.50.500.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: MW080658
Parameters: 2 7 7 80 10 50 500
Length:  469928

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20135--20213	39	2.0	39	95	0	140	30	18	29	21	1.97
28361--28403	18	2.6	16	82	10	52	20	20	32	25	1.97
58125--58226	39	2.6	39	100	0	204	39	28	2	29	1.71
64239--64278	8	4.6	8	82	17	53	47	2	0	50	1.14
64244--64286	19	2.3	19	100	0	86	41	4	0	53	1.21
84829--84862	14	2.5	14	90	4	52	23	38	14	23	1.92
160205--160257	22	2.5	22	84	9	65	28	9	47	15	1.76
160222--160266	21	2.1	22	83	4	56	26	15	35	22	1.94
184062--184101	18	2.5	15	78	21	53	40	12	32	15	1.84
184067--184101	18	1.9	18	100	0	70	40	11	31	17	1.85
195004--195041	20	1.9	20	89	10	60	31	34	10	23	1.89
242723--242818	30	3.2	30	64	21	83	26	13	25	35	1.93
264851--264893	18	2.4	18	81	18	54	34	25	20	18	1.96
274372--274408	17	2.2	17	90	0	56	43	18	8	29	1.79
336604--336638	17	2.1	17	100	0	70	45	28	11	14	1.79
394785--394818	14	2.5	14	90	4	52	23	38	14	23	1.92
432050--432091	21	2.0	20	86	4	57	14	42	4	38	1.66
437206--437317	30	3.5	30	75	17	127	20	14	8	56	1.65
437237--437347	42	2.6	42	68	13	102	18	14	9	56	1.65
437249--437304	18	3.1	18	77	10	60	17	16	8	57	1.64
437267--437327	24	2.5	24	83	0	68	21	13	6	59	1.57
437216--437370	66	2.4	64	78	15	156	17	15	10	56	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
437329--437365	18	2.1	18	94	0	65	5	21	16	56	1.59
453720--453745	13	2.0	13	100	0	52	23	23	0	53	1.46

Tables:   1

The End!