Specifications ============== Sequence source file: "/mnt/biodata02/home/xyzhang/pmgdraw-test/test_set/outdir_mt10/NC_068017.1/NC_068017/Repetitive_sequence/123.misa.ini" Definement of microsatellites (unit size / minimum number of repeats): (1/10) (2/6) (3/5) (4/5) (5/5) (6/5) Maximal number of bases interrupting 2 SSRs in a compound microsatellite: 100 RESULTS OF MICROSATELLITE SEARCH ================================ Total number of sequences examined: 1 Total size of examined sequences (bp): 878988 Total number of identified SSRs: 141 Number of SSR containing sequences: 1 Number of sequences containing more than 1 SSR: 1 Number of SSRs present in compound formation: 87 Distribution to different repeat type classes --------------------------------------------- Unit size Number of SSRs 1 126 2 10 3 5 Frequency of identified SSR motifs ---------------------------------- Repeats 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 total A - - - - - 11 1 1 1 14 C - - - - - 1 1 G - - - - - 18 6 5 7 6 6 3 5 2 2 1 2 2 1 4 1 2 1 2 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 96 T - - - - - 6 3 2 1 2 1 15 AG - 2 2 AT - 2 1 3 CA - 1 1 CT - 2 2 GA - 1 1 TA - 1 1 AGG 2 2 AGT 1 1 CTC 1 1 TTC 1 1 Frequency of classified repeat types (considering sequence complementary) ------------------------------------------------------------------------- Repeats 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 total A/T - - - - - 17 4 2 1 1 3 1 29 C/G - - - - - 19 6 5 7 6 6 3 5 2 2 1 2 2 1 4 1 2 1 2 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 97 AC/GT - 1 1 AG/CT - 4 1 5 AT/AT - 3 1 4 AAG/CTT 1 1 ACT/AGT 1 1 AGG/CCT 3 3