Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_068018
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 747621
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.27
Found at i:12990 original size:17 final size:17
Alignment explanation
Indices: 12968--13001 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
12958 GCTATGATAC
12968 GCTCATAGGCCACAGAA
1 GCTCATAGGCCACAGAA
*
12985 GCTCATAGGCGACAGAA
1 GCTCATAGGCCACAGAA
13002 CCGGCTCTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.35, C:0.26, G:0.26, T:0.12
Consensus pattern (17 bp):
GCTCATAGGCCACAGAA
Left flanking sequence: Indices 12468 -- 12967
CAAGAATATGTGCCAATTCGGACCTTCAAACGACTACTTTTACCCCAAGACATCCAGTCTATCCT
CAGATGGGTCTCACGCAATTCTTAGCTGCCCTTTCACTCTGGAAGGAAAGGTATAGTTAGGTCTG
AAAAACGGACTATCAATCACATGCATTAAGATAGCAACTTGGATCCTTATCCTTAGCGGAATGTC
TGTCATCAATGGAACTCCTAACTGACTGAGACCAATATTGAGCCTAGCTCTTCAAAAGGAGAAGG
GAGCAAGCAAGCTATGAGAGAGCGGAATTATCCTGCTATGCTTTAGAGTCCCAATCAAGATCAGG
AAGGCTGAGAGCAATCCACCATCACCATTCCCTTTGTTGCCGCAGGAATCATGCATGGGTTCTCT
CCAAACATGCACAAGGACTCCAAGTAAGGCATTGGCACTGCCGATAAGAAAAGGTGGAGAAGGAC
AGAAGCTCATACGCCACAGAAGCGAATATACTATTGCTATGATAC
Right flanking sequence: Indices 13002 -- 13501
CCGGCTCTACAGCAAGGTCTACTCCGAAAATCAAATGGGACTGGATCACCGGGATCAATAGAATC
TAAAGGATCTACTTCTGTGTTGTATCTGGATTTGTTACAAGTAACTGATTTCGAACCGTTGATGT
AGCTGGGTCACTCGGGGTCCCAAGCCACTATTCTTGTCATTTTCATCCCCGTCCTTTGGCGGTCT
TATAGTAATAGGTGGAGCACAACTAGTTCCAGCACAAAAATAAGATCTTCGACCACTTGCTTTCT
TTCTCCCGGAATGCATAAAGTATCTGCTGCTAGCTTGACCGCTGCTGGTAGCCGTAATTGGGTGG
CGCGCTATAGATCGGATCCTAAGTAGCTATAGGATGAACCCTGGAAGACGGCCCTACCGGAGGAA
GCGGGTAGGGTGAATCTCCGTAACGATTCTAACGACCTAGCTAACCGTTGATTCAATGTCCTCTT
AATCGGGGCACCGGTTTTTTTCTTGTTTTCAACTAGGTCTTTTCC
Found at i:33475 original size:15 final size:15
Alignment explanation
Indices: 33455--33484 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
33445 CATCTTTTTA
33455 TTCTTTTTTTACTTT
1 TTCTTTTTTTACTTT
33470 TTCTTTTTTTACTTT
1 TTCTTTTTTTACTTT
33485 ACAAAGAACA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.07, C:0.13, G:0.00, T:0.80
Consensus pattern (15 bp):
TTCTTTTTTTACTTT
Left flanking sequence: Indices 32955 -- 33454
TACCTCCGGTCCAATTGGTGAATGCCACCAGCAATGCCACCACTAGGCTTGCTCCCGGAATTTCC
CTTCACTATATCACCAAGTTCGGTTGCACCCGAAGGGCCTGATTTCTGCGCGTTCCCCTTAGAAT
AGAAAGGGAAACCGGTAGCGAAGGTATTTGACTCCCGGGGCAGTCGCGAAGTGAAGGCCGATCGA
ATCAGCGAGTGGAAGTGCGGTAAGATGAGTTTACCGCTGTTCCATATAGATGAGTCTTTAAGGTC
TTGATTTGACAGGAGGTTGACTGGGCGACTATTTATGATTCCCTCCGGTAAGAACAATGAACACG
GATCTACCAGCGCAAGACAAGAAGTGAAAATCTCAGTTAGTTAATGGTCCTCACAACGAATCAGT
TGTCCCCCAACGCTTAAGGAGAGATTTTTGTAGAAAAGAAAGGTGTATGTCATGGGCCCTATTCT
CTATTTGCCAGGCGTTAGTTAATGGTCCTCTCTTTCATCTTTTTA
Right flanking sequence: Indices 33485 -- 33984
ACAAAGAACAGGGATTTGACCGACTCGAACACGGGAAGGCGCTCCCGAGAAAGGGATTGGCTAAG
ATTTTATATTTTCTTTTCTCTCCCCCATTTCTGTAACCAAAATCGCTTTGACTTATTCGACTAGA
CGGGGAAGGTCTGTCCCTTCTCCACTGGAAGAAAGTAGATGATCACGTAGGGCGAATGAATCAAA
GAAAGGGAAACTTCTCCATCCCAGAAAGCGGAGTTACTTCTTGAATCTTTGAATAGAAAGCCCCA
TTAACCAGACAAGCTGGAGGAGACAAGCTACCTCACAGAAAGGATGACCAAGGAAGGGCCAGTTG
ACGCAGCAAGCTAGAGCTATGAAACCGCCCCTTTATCATTTAACTCGTCGGATTATGAATGAGAT
ATTCAGACGTCAGCTTGAAGGCTACGATTCCGTTCTTCTGTCTAGATTCCTTGTTGCAAGGCGGA
AGTAAGTCAATTAGAAATATAAACCAGCATAGGCCAAAACAAAAA
Found at i:37604 original size:13 final size:13
Alignment explanation
Indices: 37586--37613 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
37576 GTAATTCTCC
37586 GATCCAAGGCTAA
1 GATCCAAGGCTAA
37599 GATCCAAGGCTAA
1 GATCCAAGGCTAA
37612 GA
1 GA
37614 GAGAAATGCG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.39, C:0.21, G:0.25, T:0.14
Consensus pattern (13 bp):
GATCCAAGGCTAA
Left flanking sequence: Indices 37086 -- 37585
CCGTCTCTATGTCTCAGAAGTAGTCTGTGTAAATCATTCATACCTGAAGCCATAATGACAAATGG
ATTCTGGTATGAATAGGGGAATGGATCAAAGAAAGAAGTCTCAAGTCAAGGAATCTGTAGAGTGT
AGTATGGGAGGAACCTCCACTGCCTAAGCTCTAGGAAGAAGCGGGTGCGCTAAACAACCAGGAAC
GAACAAGGGATAATCACAAAACGAATCTACTGATCCAACGACATCGAGGATCGACCAGGGTCGCT
ACCCGGAACGACACTAGCTCTATATAAATGGAAAGCCCCAATTCTCTTTAGAAGGGTTAGCTCTC
TTATTTCCCATTCCGATCGGCCTGAACAGGCATGAATTAAGCACCACCCGAGTAGGACCAGCATG
TAGAATGACTTCCCCGAAGCTGGAAGCGGCGTCCAAAGAGACCAAGAAGGTCGTAACGAATGCCT
TCTTATTAACCGTGCCCTAATTTTGTATAATATAGGTAATTCTCC
Right flanking sequence: Indices 37614 -- 38113
GAGAAATGCGATTTGTTCCCGAAGGTCTTCGGTTCCGTGTAGAAGCAAACTTTACACATCTACGA
TAAACCTTTCCTTGTTTTCCCGGCATCTTTTGCGTATCACTATATGAAGAAGAGACCTTCCTTTT
CACTTGAATCTATCGTTTGGGCTCAGCCGACGGGCTAGCAGGAGCCCTTCTATTAACAACCTAAC
GCGTTGCGGCGCCTCAAGCGCCTCCACTTGTAGCCTCCAATTGTACCTTCACTTGCTCCAAGATG
ACAACCCACTTCTGTCCATGTTGACCACCCACTTCGAACCCCTCTTAGTGTGATTTGCATCGCTG
GTTTCAAGCAATCGATTTGCGCGGTTCTTACCTGTCAGGTAGTTCACCCGTTACCCTCTCTTAGT
TCGCCTTTATTCGCCATCTTTCTTGAAAAGAAGGAAACTTAAAGAGAAGGGCCTTCGCATTCCGA
ATTGTGGGACGGGCAGTAAGACTCCCTAATATCTTAGTTGCCCGT
Found at i:38741 original size:21 final size:21
Alignment explanation
Indices: 38717--38762 Score: 53
Period size: 18 Copynumber: 2.3 Consensus size: 21
38707 CCATCTCAAT
38717 CTCTTCCATCTGAACCAGCCG
1 CTCTTCCATCTGAACCAGCCG
*
38738 CTC-T--ATCTGAACCAGTCG
1 CTCTTCCATCTGAACCAGCCG
*
38756 CTATTCC
1 CTCTTCC
38763 TTCTTCCAGG
Statistics
Matches: 20, Mismatches: 2, Indels: 6
0.71 0.07 0.21
Matches are distributed among these distances:
18 15 0.75
19 1 0.05
20 1 0.05
21 3 0.15
ACGTcount: A:0.20, C:0.39, G:0.13, T:0.28
Consensus pattern (21 bp):
CTCTTCCATCTGAACCAGCCG
Left flanking sequence: Indices 38217 -- 38716
GCTTCCTCATCTCTAAAGCTGTTGAACTGATTCTCGTTCCATACGAACAAACTCGGAATTACCTT
GTACAATTATATTAGAGTCCCTCTTTCTTTTTTTCAAGTGAAATCGACGATCAAAGAACTAGAGC
CGAAAGTGCCCTTGCTAAGGCGAGTCTCTGCTCGCCGAGTCCATCATCTTTCTCACTCCGGATAT
ACGCCATTTCAAGCCATGCGTTCTTTTGCCTTGATTCAAGATAGAGTGACTCTTCATCGTACTGA
TTCAACGCGAAGTGAGTGGTCCATTTTTTGCATCCGGCATTCCTATTGATAGTTGCTTCTGCTTG
TAGCACGCATGTTGCTTTTGTTGCTGATGACCATAGGGTCTTCAATTGGAAAGCCCTTTTGAAGC
CGGATAAGTGTGTTCAATTGCCCGATGCCCCATTACAATATCAGGCAATACTTGATAGCTTGTTT
TCCGGGCTTGGTTTCGAGAGGCCACCACAGCTTGACCATCTCAAT
Right flanking sequence: Indices 38763 -- 39262
TTCTTCCAGGCCTAGGTTTGCGGATGCTAAGCAGATCCCTACCTTGGAGGAAGCCTATTTTTGCT
TCAATCTTGAGGATGCCGTTTTGACTTCAATGGAAAGGTTAAAGCCGGCACTAAGGTCCAGAATG
AAAGAGAAGCAAGTCATGAGGTTGACCGAAACGGGTGATAGTTTCATACCCGTAATTACATAAAA
GAGAGAGAATCACAACGGCAATTGCTCTTCTTTCAAGTGAGTGACATAGGTTCGAGCAACCACTG
ACAAAAGCGCCCTTTTTTCTAAGGTAGATCTCCGGTCGCAAAGATCTTTATCTCACGCTTGCAGC
CCGCGGATGCCCTGTTGTTTTGCCTTGTGGTATAGGGCCTGTTCCGTGTGCTGTATTAAGAATTC
ACAACTTGAAGAGATCTTTCTTCTGCTCAATCATATGAGGGAGCGCCTTCCCTTCTTCCATGTCC
TGGATCTATATCGACGAAGGGCAACGAAGCTTCTGCTCCCGCTGG
Found at i:57625 original size:18 final size:18
Alignment explanation
Indices: 57585--57627 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
57575 AGAGCCCTGC
57585 CATAGTCGCGAGTCTGTTT
1 CATAGTCGCGAG-CTGTTT
57604 -ATAGTCGCGA-CTGTTGT
1 CATAGTCGCGAGCTGTT-T
57621 CATAGTC
1 CATAGTC
57628 AACAAGGTTG
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
16 5 0.23
17 1 0.05
18 16 0.73
ACGTcount: A:0.19, C:0.21, G:0.26, T:0.35
Consensus pattern (18 bp):
CATAGTCGCGAGCTGTTT
Left flanking sequence: Indices 57085 -- 57584
CACCTAACAAAGAAGCATAGGTGTAGTTCCGTCAGGCTTCCCCTCGCTCTCCTTTCCCTAATATG
AACCTTGAGTCATCAAAGCCTTTCTGACTCGGCCTGGCCCGGTCGCCCTACGCTACTGGCGCTTC
AAAAGGCGAAACTCTCAATTCTCGATAAAGGGTTTGCTTGTTATTTGAAAAGGCGGACACTTTTA
GTTATCTAAAGGCGAAGACTCTGAAGTGGGCGAACACTCGGCCCAGCGGGCGAACATGCCGGGCT
CCGGCTCCGCGCACCTGCCCTTTCGAAGCACTTTCTAGTGTGAACCACCAAGGAACGTCCCGCGT
TCCGGCTTGTTCGAATCGCGTCACGAGTCTACAAGCCTTTCTCATTTCAGTGCTCGCCTTTTGAC
TATTCCCCCGTTCAAATTCCGTACCGTCACGTTCCGCCCTATCACGTAAGGGGGCCTTTAGTATT
TTGATTAGAGTAGGGGTCGCGAGAGAGCAGAGCTTAGAGCCCTGC
Right flanking sequence: Indices 57628 -- 58127
AACAAGGTTGAAACTTCCAGGAAAAAACTTCGAATTGGGAGGGCGATCCTCCCGGTGAACTGACC
GTACCCCAAACCGACACAGGTGAACAAGTAGAGTATACTAGGGCGCTTGAGAGAACCATGTCGAA
GGAACTCGGCAAAATGACCCCGTAACTTCGGGAGAAGGGGTGCTCTCCTATCTTTTGATTAGGAA
AGCGGCACATACCAGGGGGTAGCGACTGTTTATTAAAAACACAGGACTCTGCTAAGTGGTAACAC
GATGTATAGAGTCTGACACCTGCCCGGTGCTGGAAGGTCGGAAGGAGAAGTGTTATAAGCTTTGA
ATGGAAGCCCCGGTAAACGGCGGCAGTAACTCTAACTGTCCTAAGGTAGCGAAATTCCTTGTCGC
ATAAGTAGCGACCTGCACGAATGGTGTAACGACTGCCCCGCTGTCTCCGACATGGACCCGGTGAA
ATTGAATTCTCCGTGAAGATGCGGAGTACCAACGGCTAGACGGTA
Found at i:70717 original size:39 final size:39
Alignment explanation
Indices: 70663--70741 Score: 149
Period size: 39 Copynumber: 2.0 Consensus size: 39
70653 CGATTTTCTA
*
70663 TTCACTCATGATCTGGCCTGGTCGACCCGATCATGATAT
1 TTCACTCATGATCTGGCCTGGTCGACCCAATCATGATAT
70702 TTCACTCATGATCTGGCCTGGTCGACCCAATCATGATAT
1 TTCACTCATGATCTGGCCTGGTCGACCCAATCATGATAT
70741 T
1 T
70742 GAAGGATGGG
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.22, C:0.28, G:0.19, T:0.32
Consensus pattern (39 bp):
TTCACTCATGATCTGGCCTGGTCGACCCAATCATGATAT
Left flanking sequence: Indices 70163 -- 70662
ACACCTGTGTAGAGTAGATCGTTCAACACCTGCGGCACAAACCCATTTTTGACCCATTGGTCCTA
GTATCATAGGCGACCGAACGGCCGCCCCCCCCCTAATTACTAGACCGACCTGCTGTAATAATTCC
ATAAACACCTAGCGAAGATATGGCAAACAAATAAAGTAGCCCTATGTTCGAATCTGACAATACCA
TACCATAATCAAAAGGTACAACGGCCCGAGCGACCAGACTTAACATAAATGTAGCCACTGGAGCC
ATTCTAAAAAGGGAGAAATTTGCACTACTTGGTGAAATAGGTTCTTTTAGAATCAATTTCGAACC
ATCTGCTAGAGGTTGTAACAATCCGAACGATCCCACTACATCAGGACCCTTTCGACGTTGCACAA
AAGCCATTACTTTACGTTCAGCTAGCACTAAAAAGGCTACTCCTAGTAGAAGTGGTAGAATTATT
CCAAGTATTTCCGCTGGAACTGCTATGTACGTTTTCGATTTTCTA
Right flanking sequence: Indices 70742 -- 71241
GAAGGATGGGACCTTTTCTCGAAAAACTCCGGATCCCGAGAAGAGTGGAAGATGGTGCAACATCG
AATCCTGTTACGTTACTTCGAATGGAATCTTAGCCCGCCTCACTTGACTGAGCATAAGCGAAGTC
AAGGGATTTCCTTCTAACTAGTGGCTGAGAGTAAGCAAGCTACCTTCATTCAACAGATTTGTGGT
TGAGTCAGCTCCGAGATGAGAAGGCGGAACATTCCCCTTCCACCTTCGCCTTTGACTATATAAGG
TCGGGAGAGGCTCCCGATTTCTGGTTTATAGGCGATCATATGCCGAAATCAAGTAGAACCTTAAG
TCCAAGTCAAATAAATAGGGCATGGTTGAATTTCATATGAATTTGAATTGAAATGAATTTCATAT
GAATTTGAATTTGAAAAATGAAAGCTGCTTGTTAGGTGTAGTGCTAACTTGAAGTATGCTTCTTC
CCCTTTCAGTCTAATTCAGAACTTGACTAAGCCCCGCGAAGTAGT
Found at i:71131 original size:27 final size:28
Alignment explanation
Indices: 71093--71147 Score: 103
Period size: 27 Copynumber: 2.0 Consensus size: 28
71083 AGGGCATGGT
71093 TGAATTTCATATGAATTTGAA-TTGAAA
1 TGAATTTCATATGAATTTGAATTTGAAA
71120 TGAATTTCATATGAATTTGAATTTGAAA
1 TGAATTTCATATGAATTTGAATTTGAAA
71148 AATGAAAGCT
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
27 21 0.78
28 6 0.22
ACGTcount: A:0.40, C:0.04, G:0.15, T:0.42
Consensus pattern (28 bp):
TGAATTTCATATGAATTTGAATTTGAAA
Left flanking sequence: Indices 70593 -- 71092
TCCTAGTAGAAGTGGTAGAATTATTCCAAGTATTTCCGCTGGAACTGCTATGTACGTTTTCGATT
TTCTATTCACTCATGATCTGGCCTGGTCGACCCGATCATGATATTTCACTCATGATCTGGCCTGG
TCGACCCAATCATGATATTGAAGGATGGGACCTTTTCTCGAAAAACTCCGGATCCCGAGAAGAGT
GGAAGATGGTGCAACATCGAATCCTGTTACGTTACTTCGAATGGAATCTTAGCCCGCCTCACTTG
ACTGAGCATAAGCGAAGTCAAGGGATTTCCTTCTAACTAGTGGCTGAGAGTAAGCAAGCTACCTT
CATTCAACAGATTTGTGGTTGAGTCAGCTCCGAGATGAGAAGGCGGAACATTCCCCTTCCACCTT
CGCCTTTGACTATATAAGGTCGGGAGAGGCTCCCGATTTCTGGTTTATAGGCGATCATATGCCGA
AATCAAGTAGAACCTTAAGTCCAAGTCAAATAAATAGGGCATGGT
Right flanking sequence: Indices 71148 -- 71647
AATGAAAGCTGCTTGTTAGGTGTAGTGCTAACTTGAAGTATGCTTCTTCCCCTTTCAGTCTAATT
CAGAACTTGACTAAGCCCCGCGAAGTAGTTTGCTGGCTTCAAAGTGCTAGTTGTTGCGCGCTAGC
GCGCGTCCGTTTTGAGGCAGGCGAAAAGCAGCGAGCGGAGCTTGAAGAAGCGAGCCAACAAGCAA
GTCGCCAATTCGTTAGCTAACTATGAAATTGCGAGTTGCGCCCCTAGATGAATTAGTTCCGTTCC
CCAATTCGTTAATAAACGTCAAGAACCAGCAAGAAAACGCCCTATATATATAAAGGCTAACGCTA
TTAACGAATTGGGGCTGGTAGCGCTAGCGCGCTCATCCCTTGCTTGTTCTAACGAATGAATTTCA
TAGTGCCGGAGGCTGTTCGAAATTTTCAACTTAACACGCCCCCTCACTTCATCTACCGAAATGAC
CGGGCAGATCTCATGTATATTATATCAACCAGCTCATGATCCTTA
Found at i:90248 original size:19 final size:19
Alignment explanation
Indices: 90224--90261 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
90214 AAGAGCTAGA
*
90224 AACAAGCTAGGGATGAGCG
1 AACAAGCAAGGGATGAGCG
90243 AACAAGCAAGGGATGAGCG
1 AACAAGCAAGGGATGAGCG
90262 CGCTAGCGCT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.39, C:0.16, G:0.37, T:0.08
Consensus pattern (19 bp):
AACAAGCAAGGGATGAGCG
Left flanking sequence: Indices 89724 -- 90223
GCAGAGGGGGCCGGCGAATGCAACACTAGTAAAGCAAGCAATCTGTAGCTACAGCAAGGGAGTTT
GCTTGAAGAACTAAAGAGAGTATTGCATGCATAGGAGAGTATTGCGAAAGCGTAGGCAAAGAAGC
AATGGGAGCAGCAATCGCACACTTCTAACTTCCCATACATCCATCTAAAAACCTTTCTCGGTGAC
AGATGTTATTGATCAAGCCATCCCTGGACAAGCACGCGTCCGTACGGTATAACAGGACCTTAGCT
ATCTAGTGAAATAAAGGGCATACTTTGCTTGTTTCGTGGTATGGACCCCTGAATGGGTAAGGCAA
GCCAGTGAAGTCCTTATTACTGAGTCCAACCCTTCTACTAAGCTAAGCCAGTGATACCCTTTTCA
ACTTTGCCCATTTTGGTGCACGCACGAACGAATTCGTCAATCTGACATTATAGCTTTGCCTTTTT
TAAAGATATGCGATATAAGCAGCTAGAAAGAAGAGAAGAGCTAGA
Right flanking sequence: Indices 90262 -- 90761
CGCTAGCGCTACCAGCCCCAGTTCGTGTTAATTGCGTTAGCCTTTACATATATAGGGCGTTTTCT
TGCTTCACGCGCATACGTTTTCTTGCTTCACGCCCTTTACTAAATAATTGCGTTTTCTTGCTGCG
TTGAACATACAGAATTTAGGCATTCCATACCCCAGCGGAAATGGTAGACTATCGATCCAAGCCGG
ATAGGGTTTACGAGACCGATAAGATAGACGAGACCAAGAAGAAGAAAAGAAAGCGCAACTATACT
AGGCGATCAATTGTATATGAGACCCCACCGCATATCAAAATGTTCAAAGGTAGCTTCTTGCAACT
GAGCAAGTCAGATGCCTATTCCTTTCTGGAGAGTTTGGCAGAGAGAACCCCAGCAATGGGACTTC
TCTAGTTTCAGAGACAGACCTACTACTCAAAAGAAAGGAGGTTTGTATTCAGTCCGGGATGATGT
CAAAGCTAGGATAGAAGCTCTCAACCGTAAGGTAGAGGATCTGGT
Found at i:92727 original size:22 final size:22
Alignment explanation
Indices: 92696--92741 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 22
92686 TAGGGCATGG
* *
92696 TTGAATTTCATATGAATTTGAA
1 TTGAAATTCATATGAATATGAA
*
92718 TTGAAATTCATGTGAATATGAA
1 TTGAAATTCATATGAATATGAA
92740 TT
1 TT
92742 TCATTTGAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.37, C:0.04, G:0.15, T:0.43
Consensus pattern (22 bp):
TTGAAATTCATATGAATATGAA
Left flanking sequence: Indices 92196 -- 92695
GTGGGACAGAGGGCTCGTAGTACCTGCTAGCGCAGCTTTGCAGTGGAAGGGAAGGAGCCTAAATC
GACCCCCTTCTTTCTTTTTATTCAAAGACACAAAAGCAGTAAGAAAAGATTGGACTCTCGGATGA
GACTAAGCAGCTACCGACCGTTCCGACGCGCCCCTGACCTATCTTGATTAAGACCGAAAACCCTA
TCTAAAGTGGAGCCTAGTTTAAGCTTTCATTAAAATCATAGAAAAACAAGAAAAACCACTAGTAG
GGATATGGATGGACTCTCGCTCAGTAAAGAGAGTTGTAGATTCGTAGAACAGGAGAAGAGTACGC
GCGCTAGCGCGCTACAACTAGCAGCCAGCTCCGAGATGAGAAGGCGGAACATTCCCCTTCCACCT
TCGCCTTTGACTATATAAGGTCGGGAGAGGCTCCCGATTTCTGGTTTATAGGCGATCATATGCCG
AAATCAAGTAGAACCTTAAGTCCAAGTCAAATAAATAGGGCATGG
Right flanking sequence: Indices 92742 -- 93241
TCATTTGAAAAATGAAAGCTGCTTGTTAGGTGTAGTGCTAACTTGAAGTATGCTTCTTCCCCTTT
CAGTCTAATTCAGAACTTGACTAAGCCCCGCGAAGTAGTTTGCTGGCTAGCGCGCTAGCGCGCAA
CAACTAGCACTTTGAAACCGTTGCTTGCTGCATGGATTCTTTAGATCTAAAGAATCCATGTTTCC
CCCGGAGCGAGACTCTATCCAGATCTAAAAATGGAAGAACGAGCTAGGCGGCCGGCGGGCAAAGA
AAGGGGGCGGGCGGGGCCTTGGCGAGACGTTCTTCTTTCGAAGCGTTTTGCCAAAAGAGCGAGGG
CGCCCTTCTGGGGTGGGAGCGTTTCCTTTCAAATGACAACTGCCTCTTCCTACTGCGGGGGCGTT
GCACGAAACCAAACCGCCCCCCGCCCGATCAAGTACCAGTTGCTTCGCTGGTAGGCCCACTTAGG
TTAGGAGGGCATTGTCCCTCAGTTCTTACCAACCTCCGGTGTGTA
Found at i:97793 original size:27 final size:28
Alignment explanation
Indices: 97755--97809 Score: 103
Period size: 27 Copynumber: 2.0 Consensus size: 28
97745 AGGGCATGGT
97755 TGAATTTCATATGAATTTGAA-TTGAAA
1 TGAATTTCATATGAATTTGAATTTGAAA
97782 TGAATTTCATATGAATTTGAATTTGAAA
1 TGAATTTCATATGAATTTGAATTTGAAA
97810 AATGAAAGCT
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
27 21 0.78
28 6 0.22
ACGTcount: A:0.40, C:0.04, G:0.15, T:0.42
Consensus pattern (28 bp):
TGAATTTCATATGAATTTGAATTTGAAA
Left flanking sequence: Indices 97255 -- 97754
ACGTGCCGCGGTGAACGAACAAAACCAAAAAGAGGGCCGTCTCAGCGGAAGGAGAAGGACCTGCA
ACGGCAGAGACTACTGACCCTCTTCTTGCTTGTTCCTAGCCGTCTGTTACGAGTCCGGGAAGCCT
GGAATCATCAATATGAGGGATCCCTCAATAAAAATAGAGAAGGGCGGGCAGGGCTTCCGCAAGAG
CCTCCCCCTCTTCCCGGTCAAGATAGATGGGAAGGAGCCCTATCAAGTAAAGGCATAACCTGCCT
CTTTTTTTATGTACGCACACCTTTGTTTCAGGGTGAGGCCGCCCTCCCTCCTGCTAATCCGGCCA
TTTCCGAACCTGTCTTTCCCACCCCAGCTCCGAGATGAGAAGGCGGAACATTCCCCTTCCACCTT
CGCCTTTGACTATATAAGGTCGGGAGAGGCTCCCGATTTCTGGTTTATAGGCGATCATATGCCGA
AATCAAGTAGAACCTTAAGTCCAAGTCAAATAAATAGGGCATGGT
Right flanking sequence: Indices 97810 -- 98309
AATGAAAGCTGCTTGTTAGGTGTAGTGCTAACTTGAAGTATGCTTCTTCCCCTTTCAGTCTAATT
CAGAACTTGACTAAGCCCCGCGAAGTAGTTTGCTGGCTTCAAAGTGCTAGTTGTTGCGCGCTAGC
GCGCGTCCGTTTTGAGGCAGGCGAAAAGCAGCGAGCGGAGCTTGAAGAAGCGAGCCAACAAGCAA
GTCGCCAATTCGTTAGCTAACTATGAAATTGCGAGTTGCGCCCCTAGATGAATTAGTTCCGTTCC
CCAATTCGTTAATAAACGTCAAGAACCAGCAAGAAAACGCCCTATATATATAAAGGCTAACGCTA
TTAACACGAATTGGGGCTGGTAGCGCTAGCGCGCTCATCCCTTGCTTGTTTAGCACTATTCAATT
GCGAGTTGCGGCACTCACTATGAAATTCAAGAGCAAGAGCAAGAACTATTGAATTGCGAGTTGAG
GCCCTAAATGCCATGATTCATTAGTTGCTAACGCCGCAACTCGCA
Found at i:131490 original size:13 final size:13
Alignment explanation
Indices: 131472--131497 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
131462 AGAACTCATG
131472 TTTGCGCTTTTGA
1 TTTGCGCTTTTGA
131485 TTTGCGCTTTTGA
1 TTTGCGCTTTTGA
131498 GATTCCTTCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.08, C:0.15, G:0.23, T:0.54
Consensus pattern (13 bp):
TTTGCGCTTTTGA
Left flanking sequence: Indices 130972 -- 131471
AATATGAAAGGGATCCCAATAGCAATAGGAAAAGCAGAGAGGAAAGAGGAAAAAACCATTTTTTT
ATTCAAGTCAGGCTGCTTTCAGGCGTGTGCTCGGGTCTTCTTTTTTCATTAATCCTATTCTAGAG
CCTAGATCGAAATCCATTCTGTCAATGACTTGATTTGGCGACTACTAGCAATCAATCGCCTCTCC
AATTGATTTGAGAAGTAGAGACATTGGTAAGAGAATGAGTATTCGTACATCTCCTCAGAGGCAGC
GTTCGGCGGCTTCTTTGTCTTAATCTAAGCCTCGGATCTTGACCAACCATTCTTAAAGTCAAGCT
TGACTTTAGTGAGACTGATAGGTGATCCCCTTTAGGGACTACTTATCTTGTCTTAAATGGCTCTT
TCACATAGTGATGCAAGGGTATTAAACCATTGCTTATTCCTAATTAACTACGTATCCACCCCCGC
CTACCAGCTCGGTTCAGCTCTGGGGAGGTCAGGGAAGAACTCATG
Right flanking sequence: Indices 131498 -- 131997
GATTCCTTCTGTCCCTTTCCTTTACCTCCGATCTCCCCCGTCGCAGTTAGTATGGCTTGGCTCTC
CACATAGTAGTTCTAATGGCCTTTGTGAGTAAGGGCATCACATCGTCTCTTCTAAAGGATACCCA
TTCTTAACTATTCCATCCTATGGTCTGGTTGGAATAGCGGTACCACTAAAGAAGTCTGTTTCGCT
AGCCCCGATGACTTTGCGATAACTAGCTTGGGGAAACCCCTCCCTTTACGAGAGGGGACTAGAAA
ATGCCTGGACCCATTAGCATATGGAGTACAGTATACTAGTGACCGTGAGTTAGCCTATGCCGAGG
TGCAAAAGAAAGCATTCATAAAGCCTCTGAAACCGTTTCCAAGACATCCCATCCATGAATATGCT
ATGCTGCTTACTCTTCCGCTTAACGCACAAAAGATGGGAACTGTTGGGTACTCTAACACCATCTG
GCTGCCTCTGATCTTTTCGTTGAAGAAGCCTTTTCCACTACGGCG
Found at i:161323 original size:18 final size:18
Alignment explanation
Indices: 161300--161335 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
161290 ATATAATTTA
161300 TATATCAATAGTATAGTG
1 TATATCAATAGTATAGTG
161318 TATATCAATAGTATAGTG
1 TATATCAATAGTATAGTG
161336 CCCAAACAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.39, C:0.06, G:0.17, T:0.39
Consensus pattern (18 bp):
TATATCAATAGTATAGTG
Left flanking sequence: Indices 160800 -- 161299
TGTTAATTTCTTCACACTCTGCCTTCAACGCGGCCCTTTCCTCTTGCATTAGGAGGTCTTTTTCT
TTCACTCTTTCACAATATTCTTCCCACTCAGCAAGCACCACTTCGGCGCTTTGCTTTTGTTTTTG
ATTAAATTCTAAATGCCCCGCGATAATTCGATCTCTGAGGGCTTTATTCTGTATTGTGTCCAAGC
CCTCGAGGTTTGGATGAATCTCTGGTTCCGCGGAATAGACACAAGGGGGTTGCTCTGGCTCTGGC
CTCAAGTTCAGATCTATTTCGGGTTCTGGTTGTGGCGGTAAATTAAGATCCAGTACCGCGCAGCC
GCTTGTCGGAACAGTGAGTAGGCCGCCCCCAAGAGATACACCCATTATTGCTAATAAGACTTGAC
TGACTATCAAATCCAAGAAAGTCATTCTGACCAGAATGAGCAGAACTTGGATGATTAAAACTATT
AAAATATATATAAACCGACAAACCCGGTGTTTTCTATATAATTTA
Right flanking sequence: Indices 161336 -- 161835
CCCAAACAAATGAACAGTAGTTGATGATTCCCGCCAAGAATTTGATCGCCGGGTCGTGCGTATTC
CATACGACGAATCAGTACGGAGAAAATTGTGCCTATCACTCCAGCAATAGCACCGAAACGGCTCC
AATATAAAGTGCCTATATCCTTGTGGTTAGTGGAGAACAGCCATCGGACCAGATTAGAAAACATT
AGTTGAAGAATAACAACTGCTCTGCGAGCAAGGCGCACCGCGAAAGCAGAGCGACATATACCAAA
AGTGGGTTGTTTTCTAGGGTTTATTTTTTTTTCAACCGAGATAGGATTTCCTTTTCGTGCCATAT
GCGCTTAGACTTTACTTTTTCCCCCCCTTTTTTTTGCCCGGTCCAATCTTTTTTCTCGAAGGTCT
TCGTTTCCGTGTAGAAGCAAACTCTCCAAATTTATGACCAACCTTTCCTTCAGTGATCTTACAAC
GAACAGGACTTTTTCCATTGTAAATTCGTACGGAGCAATCAACGA
Found at i:175760 original size:13 final size:13
Alignment explanation
Indices: 175742--175783 Score: 59
Period size: 13 Copynumber: 3.2 Consensus size: 13
175732 CAGGGAAATA
175742 AAGATCAAGAAAG
1 AAGATCAAGAAAG
*
175755 AAGATCAA-AAAA
1 AAGATCAAGAAAG
175767 AGAGATCAAGAAAG
1 A-AGATCAAGAAAG
175781 AAG
1 AAG
175784 CTAAACAAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
12 4 0.16
13 17 0.68
14 4 0.16
ACGTcount: A:0.64, C:0.07, G:0.21, T:0.07
Consensus pattern (13 bp):
AAGATCAAGAAAG
Left flanking sequence: Indices 175242 -- 175741
AGTGGCAAAAACGACTTACTTTGTTGCAACGGGAACTACTCGCCCCAACAATGGGCACTGGTGAA
ATAGAATCTTATGTTGCAGCTACTTATGCTTTTACATGCTCAAACGGAACAAAACTGACTATTTT
TTATTACGAAACTCAGCTTCTTTCTCAATGCCAAGAACTTCAGGAGCTTAAAAGCATAAATCAAA
CTTACTTACGCGAAACACACAGACTGACGGAGCTACTGTGCCACCAGAGAGACTCGCTTTTTAGT
CTACGGTTTCTCGAGCTCAGCAGAAAGGGAATCTCTCATTCTGGGTTGGGTTGTTCGTGATTAAT
GATTGGTCCGACAAGTGAAAGAAAATAGGAAAAGTACGGTGGGTGATCCCATTCCTTAGTCAGGA
CCAGGGCCTCCTCGTGAGCCATAGTTATAGTGTAAGCATATAAATTAGCCTTATCCGAAGCGCAC
GCACCCATCTGACCAAGTCGAGCCCTTTCTGGTTACAGGGAAATA
Right flanking sequence: Indices 175784 -- 176283
CTAAACAAAGACGGAGAGGCAAAGGGCAAGGTTAGAAGAAGCTAATTCGACCGATTTGGGATGGC
ATAAACTGGAGTTGTTGAGTTAGAAAGAAGGAAGCACTTTTGATTTGTTTGAACCAAGCCCTCCC
GAACCGCATAAAAGGAACTGGTTCACAAATCATTTTAAACAAAGAATCTTGAGAAGTGCGATTTA
TTAGAATGCCCTCTGCATCGTAATCAACAAAAGAGGCATACGAATCCGCGTAATCAAGGATCTGA
ATCCACTGCCAAATCCGTATCCCTATTCCCTTCCTCAGAAACGGGCCGAGGGGGAATGTCTTCTA
GTGAGGGGAGTCTTTTCAGCTTCAATCGACTGGAAGCACTTCCTTCCGCGCCTACCTCTCTTGGT
TGCCTGCTTTTTAGGCCTGCTTTAGGACTAGGTAGGGCTAGTTCTCTTGCCCGCTTGTCGGGCTT
AAAGCGGAACTTAGCTTCTCACTAACAGAATCGTAAGTCATCAAA
Found at i:217366 original size:53 final size:53
Alignment explanation
Indices: 217286--217387 Score: 204
Period size: 53 Copynumber: 1.9 Consensus size: 53
217276 GAAGAAAGAA
217286 GCAGCAAGAAAACGTATGTGCCGCTATTAACGAATTGGGGCTTTCGCGCTAGG
1 GCAGCAAGAAAACGTATGTGCCGCTATTAACGAATTGGGGCTTTCGCGCTAGG
217339 GCAGCAAGAAAACGTATGTGCCGCTATTAACGAATTGGGGCTTTCGCGC
1 GCAGCAAGAAAACGTATGTGCCGCTATTAACGAATTGGGGCTTTCGCGC
217388 GTTAGCGCTT
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
53 49 1.00
ACGTcount: A:0.26, C:0.22, G:0.29, T:0.23
Consensus pattern (53 bp):
GCAGCAAGAAAACGTATGTGCCGCTATTAACGAATTGGGGCTTTCGCGCTAGG
Left flanking sequence: Indices 216786 -- 217285
AAATAAATTCCTCCAGACGTCATTACTAAGTAAATTGGAACTTCCTTGCTAACGTTGAGTTGGGA
GAAGCCCTTCTGCTAACTTATTGAAGTAGGCAAACCAAGCTGGCTGGAAAAGACGAGCAAGGAAA
GATTTAGGCTAACAAATATATTACTCTAAGGGCACAACTTGCCTCGAGCTTCGACGTTCCCTAAC
GCTTCAACAACAGAACAGACCTTCATTGTCAGGCACAAGCCTTCCTCTTCGTCAATGATTATGGC
TCGCTCCTGTCTTGTAGTTCGATACACTACTCTAAGGCCAGTTGCCTATACAACATCTTGACTTT
CTTTATAGTACAGTCAGCTTTGGTTATCGCTACACCCTCTCTAGACAAACGATTTGATTCAAGCC
ACTCCACTACTGGTACAGTAGCATCCTGCCTTACTAATCGTATAGGCACCCGGGAACCCTACTCA
GTAAAGAAGGGGATAGAGAGGCAGGTACGCAGAAAGAAGAAAGAA
Right flanking sequence: Indices 217388 -- 217887
GTTAGCGCTTATCCGTTGCTTGTTCCGTTGTTTGTTGCGCAACGGCTTTCGCGCTAGCGCGCTCA
TCCGTTGCTTGTTCGCTCATCCGTTGCTTGTTCCCTCCTGACCATACAACGACTAGAAACTAGAG
CTCCTTGCACACTGACTTCAATCGTATAGAGATTTCCCACTGCTTACAAGTTAGAATAGGGTCGA
TACCAGAAACTACGACTGAAACCTACCTCTCGTCCGGTGATAGCAATATAGTAAGTGATTGCCTA
CTTTATATGTCCGGAGACGCTTACTGCACTGCTTCTTCTGTCAAGGCAGGCAGGCGGTTATCAGG
ATGTAGACAAGGAGGTAGGCTTAGAGCCAGCAATAAAACTAGCAAAGACAGCTCTACCGCGAGCG
AGTAGCCTTTGCCAAAGAAGCGCTAAGAGCTTACTTGTTGCCTTGCCTGCGTTAGGAGAGGAGTG
AAGGGAGGAAAGAAGAGTTGTACCGATTTCTCTTAGCATACAAGA
Found at i:217471 original size:19 final size:19
Alignment explanation
Indices: 217447--217485 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
217437 CGCGCTAGCG
217447 CGCTCATCCGTTGCTTGTT
1 CGCTCATCCGTTGCTTGTT
217466 CGCTCATCCGTTGCTTGTT
1 CGCTCATCCGTTGCTTGTT
217485 C
1 C
217486 CCTCCTGACC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.05, C:0.33, G:0.21, T:0.41
Consensus pattern (19 bp):
CGCTCATCCGTTGCTTGTT
Left flanking sequence: Indices 216947 -- 217446
GCACAACTTGCCTCGAGCTTCGACGTTCCCTAACGCTTCAACAACAGAACAGACCTTCATTGTCA
GGCACAAGCCTTCCTCTTCGTCAATGATTATGGCTCGCTCCTGTCTTGTAGTTCGATACACTACT
CTAAGGCCAGTTGCCTATACAACATCTTGACTTTCTTTATAGTACAGTCAGCTTTGGTTATCGCT
ACACCCTCTCTAGACAAACGATTTGATTCAAGCCACTCCACTACTGGTACAGTAGCATCCTGCCT
TACTAATCGTATAGGCACCCGGGAACCCTACTCAGTAAAGAAGGGGATAGAGAGGCAGGTACGCA
GAAAGAAGAAAGAAGCAGCAAGAAAACGTATGTGCCGCTATTAACGAATTGGGGCTTTCGCGCTA
GGGCAGCAAGAAAACGTATGTGCCGCTATTAACGAATTGGGGCTTTCGCGCGTTAGCGCTTATCC
GTTGCTTGTTCCGTTGTTTGTTGCGCAACGGCTTTCGCGCTAGCG
Right flanking sequence: Indices 217486 -- 217985
CCTCCTGACCATACAACGACTAGAAACTAGAGCTCCTTGCACACTGACTTCAATCGTATAGAGAT
TTCCCACTGCTTACAAGTTAGAATAGGGTCGATACCAGAAACTACGACTGAAACCTACCTCTCGT
CCGGTGATAGCAATATAGTAAGTGATTGCCTACTTTATATGTCCGGAGACGCTTACTGCACTGCT
TCTTCTGTCAAGGCAGGCAGGCGGTTATCAGGATGTAGACAAGGAGGTAGGCTTAGAGCCAGCAA
TAAAACTAGCAAAGACAGCTCTACCGCGAGCGAGTAGCCTTTGCCAAAGAAGCGCTAAGAGCTTA
CTTGTTGCCTTGCCTGCGTTAGGAGAGGAGTGAAGGGAGGAAAGAAGAGTTGTACCGATTTCTCT
TAGCATACAAGACAGAGTTCCCTTAGCCGTGCAGTGAGCGGTACCCCATCCACACAGTGCTGTCT
ACGGATCCTTTCCCGGATTCGGGTTAGTATTAGTCTCCCTAGCGG
Found at i:231794 original size:21 final size:21
Alignment explanation
Indices: 231768--231809 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
231758 TAATATTCCG
231768 GTCGAATTAATCAAATGAAAT
1 GTCGAATTAATCAAATGAAAT
231789 GTCGAATTAATCAAATGAAAT
1 GTCGAATTAATCAAATGAAAT
231810 TTGCCTCACT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.48, C:0.10, G:0.14, T:0.29
Consensus pattern (21 bp):
GTCGAATTAATCAAATGAAAT
Left flanking sequence: Indices 231268 -- 231767
TCGAAGCAGCTACTCTTGCTGCTGCAAAGAGTGGACCACTCCCTTAAACTAATTTCGAAACACGA
TTGTCGTTCTCTAAGTCATCGGCAAAGCTTCTAGACTTGGAGGAGTCCCACCCTCACCTGGATTC
TTATCTGGCTCTCATTAGCCTAAATCCCCAATAAAGGCTTCCCTGTCCTGTTATCAATTGACTGG
CTCAACTACTTCTCCCTCGCCATCAACAGCACAATCGCAGAGGCGGGGGCGGTCCAATCTTGAGA
CTGACGAGCAAGTGCGTTCACTTGCTGACCCTAGGGCTATAATCAAGGCAAATGGGTAAGAAAAG
GGATGAGATAATAGCGATTCAAATGACCTTCGTTCCCCTGATTAAAGGTATGAGCACCGCCTTGG
TGCTTGCACAAAGGAATCTTCGGAGATTGAGAAGACGGATTCATAAATAGCTGCCTAACTTGCGC
TCTTTAGTTGTTCGAACTGAACGGTTTCATTTTAGTAATATTCCG
Right flanking sequence: Indices 231810 -- 232309
TTGCCTCACTCGTAAGTAACTTAGTATAAAATTACGAAGAAGATTCCTCTCGTCTATCGCCAATT
TCTTTGATAGTATGGCAGTAGTCAATTAAGAGGGGACGTTTTGCTGCAGCGATTGCAGTCGCTCC
GAGAGCAGAAGATGCCGGTCGTAAAGGATGTGGTACTCGAGCTGATCCCCTGTCGTCTGAGAAGG
AACTCTCTTTTCCCAGAACTGCAATAGCTGTGACCCAGCATTGGTATGTTGGTCTGCCCTCAGTC
TGGATATCGGCGAATTGTCTCGTAGGTGGTTACTGCACTGTTGGTATCATCGGTAGGCGGTGTAG
GCAATACAAGGAAAATCATGAGCCTTGTAGTCGTAGGGGAAGTTGGGACCCACTGTTAGGTGGGC
CCTAGTGCTAGAGCATTTTCGTGCTCCTTTCACTATTGATTGATAACATATCTGATTTCATCATG
CACCTCCATTAATGCCTAAATTCCTTACTTTACAGAGCCATTCCT
Found at i:244790 original size:22 final size:22
Alignment explanation
Indices: 244759--244804 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 22
244749 TAGGGCATGG
* *
244759 TTGAATTTCATATGAATTTGAA
1 TTGAAATTCATATGAATATGAA
*
244781 TTGAAATTCATGTGAATATGAA
1 TTGAAATTCATATGAATATGAA
244803 TT
1 TT
244805 TCATTTGAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.37, C:0.04, G:0.15, T:0.43
Consensus pattern (22 bp):
TTGAAATTCATATGAATATGAA
Left flanking sequence: Indices 244259 -- 244758
CAGGCGAACGGGAACCGACCGAGAACCCGAACCGCTTGACTGACCCACCTCCGGGTCGGGATGGA
TGGAACCAATCAGAAGTGAAAATCGCGCAAGCGAAGCCGGGAAACGGACCGCAGCGCAACGACTA
TCGTGTCGGAGGAGTTTTGAGCGTGAGCTACCACTCATGCAGCGGCAAGGACCCGCAACTCTCGA
AGGGGCCACCAACCGCCCGAATCACTGTAGCAAACCCTCCCTTTACTCAATGGATAGCGCCTATC
CTCTTTCAATCAACAAAATGTGAAATGGGGGAGAAAGAAAGAGGTCTTTATTGAAGAGACTTTGC
ACCTGAAATAGGACTAATGAAAATCCCGCTCCGAGATGAGAAGGCGGAACATTCCCCTTCCACCT
TCGCCTTTGACTATATAAGGTCGGGAGAGGCTCCCGATTTCTGGTTTATAGGCGATCATATGCCG
AAATCAAGTAGAACCTTAAGTCCAAGTCAAATAAATAGGGCATGG
Right flanking sequence: Indices 244805 -- 245304
TCATTTGAAAAATGAAAGCTGCTTGTTAGGTGTAGTGCTAACGCAACGCCTCCACTTGCGTAGTA
GTTTGCAGGATGCCGGCCGAGATGGAGCTGGGAGCCAACCTATACTTTCCTGGGGCTTGCCTTGC
CCCAACATCTACACCAGCGGGCGCCGAAAAGGAACCAGCCCAGCCTCTTCAAGAAAGCTTTGCTT
GGTAGGCGCTGCCTACTTACTCGGACAATGCTCTAAACACTAAAGTATGCTATGCAGTTCCGCCC
CCTTCTCCCATGCTGAGTCACAGGCAGCGTCTCGGAAAGCACGGACGAGCCACATGCAGGGAAAC
TTGCACGTGTGGTTCTGGCCGGGGACCCCGGTATACTGTACTAATATGTGTAGGTCCCCGTAATT
CGAGTGAGATTGTCATGGCGCAAAAGCAGATATGGTCCGGTATTCCCTTGTTCCCCGTATTGGTT
ATGTTCCTCATTCCTCGTCTAGCAGAAACTAATCGAGCTCCGTCT
Found at i:262805 original size:17 final size:17
Alignment explanation
Indices: 262783--262816 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
262773 GCTATGATAC
262783 GCTCATAGGCCACAGAA
1 GCTCATAGGCCACAGAA
*
262800 GCTCATAGGCGACAGAA
1 GCTCATAGGCCACAGAA
262817 CCGGCTCTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.35, C:0.26, G:0.26, T:0.12
Consensus pattern (17 bp):
GCTCATAGGCCACAGAA
Left flanking sequence: Indices 262283 -- 262782
CAAGAATATGTGCCAATTCGGACCTTCAAACGACTACTTTTACCCCAAGACATCCAGTCTATCCT
CAGATGGGTCTCACGCAATTCTTAGCTGCCCTTTCACTCTGGAAGGAAAGGTATAGTTAGGTCTG
AAAAACGGACTATCAATCACATGCATTAAGATAGCAACTTGGATCCTTATCCTTAGCGGAATGTC
TGTCATCAATGGAACTCCTAACTGACTGAGACCAATATTGAGCCTAGCTCTTCAAAAGGAGAAGG
GAGCAAGCAAGCTATGAGAGAGCGGAATTATCCTGCTATGCTTTAGAGTCCCAATCAAGATCAGG
AAGGCTGAGAGCAATCCACCATCACCATTCCCTTTGTTGCCGCAGGAATCATGCATGGGTTCTCT
CCAAACATGCACAAGGACTCCAAGTAAGGCATTGGCACTGCCGATAAGAAAAGGTGGAGAAGGAC
AGAAGCTCATACGCCACAGAAGCGAATATACTATTGCTATGATAC
Right flanking sequence: Indices 262817 -- 263316
CCGGCTCTACAGCAAGGTCTACTCCGAAAATCAAATGGGACTGGATCACCGGGATCAATAGAATC
TAAAGGATCTACTTCTGTGTTGTATCTGGATTTGTTACAAGTAACTGATTTCGAACCGTTGATGT
AGCTGGGTCACTCGGGGTCCCAAGCCACTATTCTTGTCATTTTCATCCCCGTCCTTTGGCGGTCT
TATAGTAATAGGTGGAGCACAACTAGTTCCAGCACAAAAATAAGATCTTCGACCACTTGCTTTCT
TTCTCCCGGAATGCATAAAGTATCTGCTGCTAGCTTGACCGCTGCTGGTAGCCGTAATTGGGTGG
CGCGCTATAGATCGGATCCTAAGTAGCTATAGGATGAACCCTGGAAGACGGCCCTACCGGAGGAA
GCGGGTAGGGTGAATCTCCGTAACGATTCTAACGACCTAGCTAACCGTTGATTCAATGTCCTCTT
AATCGGGGCACCGGTTTTTTTCTTGTTTTCAACTAGGTCTTTTCC
Found at i:283290 original size:15 final size:15
Alignment explanation
Indices: 283270--283299 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
283260 CATCTTTTTA
283270 TTCTTTTTTTACTTT
1 TTCTTTTTTTACTTT
283285 TTCTTTTTTTACTTT
1 TTCTTTTTTTACTTT
283300 ACAAAGAACA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.07, C:0.13, G:0.00, T:0.80
Consensus pattern (15 bp):
TTCTTTTTTTACTTT
Left flanking sequence: Indices 282770 -- 283269
TACCTCCGGTCCAATTGGTGAATGCCACCAGCAATGCCACCACTAGGCTTGCTCCCGGAATTTCC
CTTCACTATATCACCAAGTTCGGTTGCACCCGAAGGGCCTGATTTCTGCGCGTTCCCCTTAGAAT
AGAAAGGGAAACCGGTAGCGAAGGTATTTGACTCCCGGGGCAGTCGCGAAGTGAAGGCCGATCGA
ATCAGCGAGTGGAAGTGCGGTAAGATGAGTTTACCGCTGTTCCATATAGATGAGTCTTTAAGGTC
TTGATTTGACAGGAGGTTGACTGGGCGACTATTTATGATTCCCTCCGGTAAGAACAATGAACACG
GATCTACCAGCGCAAGACAAGAAGTGAAAATCTCAGTTAGTTAATGGTCCTCACAACGAATCAGT
TGTCCCCCAACGCTTAAGGAGAGATTTTTGTAGAAAAGAAAGGTGTATGTCATGGGCCCTATTCT
CTATTTGCCAGGCGTTAGTTAATGGTCCTCTCTTTCATCTTTTTA
Right flanking sequence: Indices 283300 -- 283799
ACAAAGAACAGGGATTTGACCGACTCGAACACGGGAAGGCGCTCCCGAGAAAGGGATTGGCTAAG
ATTTTATATTTTCTTTTCTCTCCCCCATTTCTGTAACCAAAATCGCTTTGACTTATTCGACTAGA
CGGGGAAGGTCTGTCCCTTCTCCACTGGAAGAAAGTAGATGATCACGTAGGGCGAATGAATCAAA
GAAAGGGAAACTTCTCCATCCCAGAAAGCGGAGTTACTTCTTGAATCTTTGAATAGAAAGCCCCA
TTAACCAGACAAGCTGGAGGAGACAAGCTACCTCACAGAAAGGATGACCAAGGAAGGGCCAGTTG
ACGCAGCAAGCTAGAGCTATGAAACCGCCCCTTTATCATTTAACTCGTCGGATTATGAATGAGAT
ATTCAGACGTCAGCTTGAAGGCTACGATTCCGTTCTTCTGTCTAGATTCCTTGTTGCAAGGCGGA
AGTAAGTCAATTAGAAATATAAACCAGCATAGGCCAAAACAAAAA
Found at i:287419 original size:13 final size:13
Alignment explanation
Indices: 287401--287428 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
287391 GTAATTCTCC
287401 GATCCAAGGCTAA
1 GATCCAAGGCTAA
287414 GATCCAAGGCTAA
1 GATCCAAGGCTAA
287427 GA
1 GA
287429 GAGAAATGCG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.39, C:0.21, G:0.25, T:0.14
Consensus pattern (13 bp):
GATCCAAGGCTAA
Left flanking sequence: Indices 286901 -- 287400
CCGTCTCTATGTCTCAGAAGTAGTCTGTGTAAATCATTCATACCTGAAGCCATAATGACAAATGG
ATTCTGGTATGAATAGGGGAATGGATCAAAGAAAGAAGTCTCAAGTCAAGGAATCTGTAGAGTGT
AGTATGGGAGGAACCTCCACTGCCTAAGCTCTAGGAAGAAGCGGGTGCGCTAAACAACCAGGAAC
GAACAAGGGATAATCACAAAACGAATCTACTGATCCAACGACATCGAGGATCGACCAGGGTCGCT
ACCCGGAACGACACTAGCTCTATATAAATGGAAAGCCCCAATTCTCTTTAGAAGGGTTAGCTCTC
TTATTTCCCATTCCGATCGGCCTGAACAGGCATGAATTAAGCACCACCCGAGTAGGACCAGCATG
TAGAATGACTTCCCCGAAGCTGGAAGCGGCGTCCAAAGAGACCAAGAAGGTCGTAACGAATGCCT
TCTTATTAACCGTGCCCTAATTTTGTATAATATAGGTAATTCTCC
Right flanking sequence: Indices 287429 -- 287928
GAGAAATGCGATTTGTTCCCGAAGGTCTTCGGTTCCGTGTAGAAGCAAACTTTACACATCTACGA
TAAACCTTTCCTTGTTTTCCCGGCATCTTTTGCGTATCACTATATGAAGAAGAGACCTTCCTTTT
CACTTGAATCTATCGTTTGGGCTCAGCCGACGGGCTAGCAGGAGCCCTTCTATTAACAACCTAAC
GCGTTGCGGCGCCTCAAGCGCCTCCACTTGTAGCCTCCAATTGTACCTTCACTTGCTCCAAGATG
ACAACCCACTTCTGTCCATGTTGACCACCCACTTCGAACCCCTCTTAGTGTGATTTGCATCGCTG
GTTTCAAGCAATCGATTTGCGCGGTTCTTACCTGTCAGGTAGTTCACCCGTTACCCTCTCTTAGT
TCGCCTTTATTCGCCATCTTTCTTGAAAAGAAGGAAACTTAAAGAGAAGGGCCTTCGCATTCCGA
ATTGTGGGACGGGCAGTAAGACTCCCTAATATCTTAGTTGCCCGT
Found at i:288556 original size:21 final size:21
Alignment explanation
Indices: 288532--288577 Score: 53
Period size: 18 Copynumber: 2.3 Consensus size: 21
288522 CCATCTCAAT
288532 CTCTTCCATCTGAACCAGCCG
1 CTCTTCCATCTGAACCAGCCG
*
288553 CTC-T--ATCTGAACCAGTCG
1 CTCTTCCATCTGAACCAGCCG
*
288571 CTATTCC
1 CTCTTCC
288578 TTCTTCCAGG
Statistics
Matches: 20, Mismatches: 2, Indels: 6
0.71 0.07 0.21
Matches are distributed among these distances:
18 15 0.75
19 1 0.05
20 1 0.05
21 3 0.15
ACGTcount: A:0.20, C:0.39, G:0.13, T:0.28
Consensus pattern (21 bp):
CTCTTCCATCTGAACCAGCCG
Left flanking sequence: Indices 288032 -- 288531
GCTTCCTCATCTCTAAAGCTGTTGAACTGATTCTCGTTCCATACGAACAAACTCGGAATTACCTT
GTACAATTATATTAGAGTCCCTCTTTCTTTTTTTCAAGTGAAATCGACGATCAAAGAACTAGAGC
CGAAAGTGCCCTTGCTAAGGCGAGTCTCTGCTCGCCGAGTCCATCATCTTTCTCACTCCGGATAT
ACGCCATTTCAAGCCATGCGTTCTTTTGCCTTGATTCAAGATAGAGTGACTCTTCATCGTACTGA
TTCAACGCGAAGTGAGTGGTCCATTTTTTGCATCCGGCATTCCTATTGATAGTTGCTTCTGCTTG
TAGCACGCATGTTGCTTTTGTTGCTGATGACCATAGGGTCTTCAATTGGAAAGCCCTTTTGAAGC
CGGATAAGTGTGTTCAATTGCCCGATGCCCCATTACAATATCAGGCAATACTTGATAGCTTGTTT
TCCGGGCTTGGTTTCGAGAGGCCACCACAGCTTGACCATCTCAAT
Right flanking sequence: Indices 288578 -- 289077
TTCTTCCAGGCCTAGGTTTGCGGATGCTAAGCAGATCCCTACCTTGGAGGAAGCCTATTTTTGCT
TCAATCTTGAGGATGCCGTTTTGACTTCAATGGAAAGGTTAAAGCCGGCACTAAGGTCCAGAATG
AAAGAGAAGCAAGTCATGAGGTTGACCGAAACGGGTGATAGTTTCATACCCGTAATTACATAAAA
GAGAGAGAATCACAACGGCAATTGCTCTTCTTTCAAGTGAGTGACATAGGTTCGAGCAACCACTG
ACAAAAGCGCCCTTTTTTCTAAGGTAGATCTCCGGTCGCAAAGATCTTTATCTCACGCTTGCAGC
CCGCGGATGCCCTGTTGTTTTGCCTTGTGGTATAGGGCCTGTTCCGTGTGCTGTATTAAGAATTC
ACAACTTGAAGAGATCTTTCTTCTGCTCAATCATATGAGGGAGCGCCTTCCCTTCTTCCATGTCC
TGGATCTATATCGACGAAGGGCAACGAAGCTTCTGCTCCCGCTGG
Found at i:307440 original size:18 final size:18
Alignment explanation
Indices: 307400--307442 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
307390 AGAGCCCTGC
307400 CATAGTCGCGAGTCTGTTT
1 CATAGTCGCGAG-CTGTTT
307419 -ATAGTCGCGA-CTGTTGT
1 CATAGTCGCGAGCTGTT-T
307436 CATAGTC
1 CATAGTC
307443 AACAAGGTTG
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
16 5 0.23
17 1 0.05
18 16 0.73
ACGTcount: A:0.19, C:0.21, G:0.26, T:0.35
Consensus pattern (18 bp):
CATAGTCGCGAGCTGTTT
Left flanking sequence: Indices 306900 -- 307399
CACCTAACAAAGAAGCATAGGTGTAGTTCCGTCAGGCTTCCCCTCGCTCTCCTTTCCCTAATATG
AACCTTGAGTCATCAAAGCCTTTCTGACTCGGCCTGGCCCGGTCGCCCTACGCTACTGGCGCTTC
AAAAGGCGAAACTCTCAATTCTCGATAAAGGGTTTGCTTGTTATTTGAAAAGGCGGACACTTTTA
GTTATCTAAAGGCGAAGACTCTGAAGTGGGCGAACACTCGGCCCAGCGGGCGAACATGCCGGGCT
CCGGCTCCGCGCACCTGCCCTTTCGAAGCACTTTCTAGTGTGAACCACCAAGGAACGTCCCGCGT
TCCGGCTTGTTCGAATCGCGTCACGAGTCTACAAGCCTTTCTCATTTCAGTGCTCGCCTTTTGAC
TATTCCCCCGTTCAAATTCCGTACCGTCACGTTCCGCCCTATCACGTAAGGGGGCCTTTAGTATT
TTGATTAGAGTAGGGGTCGCGAGAGAGCAGAGCTTAGAGCCCTGC
Right flanking sequence: Indices 307443 -- 307942
AACAAGGTTGAAACTTCCAGGAAAAAACTTCGAATTGGGAGGGCGATCCTCCCGGTGAACTGACC
GTACCCCAAACCGACACAGGTGAACAAGTAGAGTATACTAGGGCGCTTGAGAGAACCATGTCGAA
GGAACTCGGCAAAATGACCCCGTAACTTCGGGAGAAGGGGTGCTCTCCTATCTTTTGATTAGGAA
AGCGGCACATACCAGGGGGTAGCGACTGTTTATTAAAAACACAGGACTCTGCTAAGTGGTAACAC
GATGTATAGAGTCTGACACCTGCCCGGTGCTGGAAGGTCGGAAGGAGAAGTGTTATAAGCTTTGA
ATGGAAGCCCCGGTAAACGGCGGCAGTAACTCTAACTGTCCTAAGGTAGCGAAATTCCTTGTCGC
ATAAGTAGCGACCTGCACGAATGGTGTAACGACTGCCCCGCTGTCTCCGACATGGACCCGGTGAA
ATTGAATTCTCCGTGAAGATGCGGAGTACCAACGGCTAGACGGTA
Found at i:320532 original size:39 final size:39
Alignment explanation
Indices: 320478--320556 Score: 149
Period size: 39 Copynumber: 2.0 Consensus size: 39
320468 CGATTTTCTA
*
320478 TTCACTCATGATCTGGCCTGGTCGACCCGATCATGATAT
1 TTCACTCATGATCTGGCCTGGTCGACCCAATCATGATAT
320517 TTCACTCATGATCTGGCCTGGTCGACCCAATCATGATAT
1 TTCACTCATGATCTGGCCTGGTCGACCCAATCATGATAT
320556 T
1 T
320557 GAAGGATGGG
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.22, C:0.28, G:0.19, T:0.32
Consensus pattern (39 bp):
TTCACTCATGATCTGGCCTGGTCGACCCAATCATGATAT
Left flanking sequence: Indices 319978 -- 320477
ACACCTGTGTAGAGTAGATCGTTCAACACCTGCGGCACAAACCCATTTTTGACCCATTGGTCCTA
GTATCATAGGCGACCGAACGGCCGCCCCCCCCCTAATTACTAGACCGACCTGCTGTAATAATTCC
ATAAACACCTAGCGAAGATATGGCAAACAAATAAAGTAGCCCTATGTTCGAATCTGACAATACCA
TACCATAATCAAAAGGTACAACGGCCCGAGCGACCAGACTTAACATAAATGTAGCCACTGGAGCC
ATTCTAAAAAGGGAGAAATTTGCACTACTTGGTGAAATAGGTTCTTTTAGAATCAATTTCGAACC
ATCTGCTAGAGGTTGTAACAATCCGAACGATCCCACTACATCAGGACCCTTTCGACGTTGCACAA
AAGCCATTACTTTACGTTCAGCTAGCACTAAAAAGGCTACTCCTAGTAGAAGTGGTAGAATTATT
CCAAGTATTTCCGCTGGAACTGCTATGTACGTTTTCGATTTTCTA
Right flanking sequence: Indices 320557 -- 321056
GAAGGATGGGACCTTTTCTCGAAAAACTCCGGATCCCGAGAAGAGTGGAAGATGGTGCAACATCG
AATCCTGTTACGTTACTTCGAATGGAATCTTAGCCCGCCTCACTTGACTGAGCATAAGCGAAGTC
AAGGGATTTCCTTCTAACTAGTGGCTGAGAGTAAGCAAGCTACCTTCATTCAACAGATTTGTGGT
TGAGTCAGCTCCGAGATGAGAAGGCGGAACATTCCCCTTCCACCTTCGCCTTTGACTATATAAGG
TCGGGAGAGGCTCCCGATTTCTGGTTTATAGGCGATCATATGCCGAAATCAAGTAGAACCTTAAG
TCCAAGTCAAATAAATAGGGCATGGTTGAATTTCATATGAATTTGAATTGAAATGAATTTGAATT
TCATATGAATTTGAATTTCATATGAATTTGAATTTGAAAAATGAAAGCTGCTTGTTAGGTGTAGT
GCTAACTTGAAGTATGCTTCTTCCCCTTTCAGTCTAATTCAGAAC
Found at i:320929 original size:17 final size:17
Alignment explanation
Indices: 320907--320981 Score: 125
Period size: 17 Copynumber: 4.5 Consensus size: 17
320897 TAGGGCATGG
320907 TTGAATTTCATATGAAT
1 TTGAATTTCATATGAAT
* *
320924 TTGAA-TTGAAATGAAT
1 TTGAATTTCATATGAAT
320940 TTGAATTTCATATGAAT
1 TTGAATTTCATATGAAT
320957 TTGAATTTCATATGAAT
1 TTGAATTTCATATGAAT
320974 TTGAATTT
1 TTGAATTT
320982 GAAAAATGAA
Statistics
Matches: 53, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
16 14 0.26
17 39 0.74
ACGTcount: A:0.36, C:0.04, G:0.13, T:0.47
Consensus pattern (17 bp):
TTGAATTTCATATGAAT
Left flanking sequence: Indices 320407 -- 320906
CTCCTAGTAGAAGTGGTAGAATTATTCCAAGTATTTCCGCTGGAACTGCTATGTACGTTTTCGAT
TTTCTATTCACTCATGATCTGGCCTGGTCGACCCGATCATGATATTTCACTCATGATCTGGCCTG
GTCGACCCAATCATGATATTGAAGGATGGGACCTTTTCTCGAAAAACTCCGGATCCCGAGAAGAG
TGGAAGATGGTGCAACATCGAATCCTGTTACGTTACTTCGAATGGAATCTTAGCCCGCCTCACTT
GACTGAGCATAAGCGAAGTCAAGGGATTTCCTTCTAACTAGTGGCTGAGAGTAAGCAAGCTACCT
TCATTCAACAGATTTGTGGTTGAGTCAGCTCCGAGATGAGAAGGCGGAACATTCCCCTTCCACCT
TCGCCTTTGACTATATAAGGTCGGGAGAGGCTCCCGATTTCTGGTTTATAGGCGATCATATGCCG
AAATCAAGTAGAACCTTAAGTCCAAGTCAAATAAATAGGGCATGG
Right flanking sequence: Indices 320982 -- 321481
GAAAAATGAAAGCTGCTTGTTAGGTGTAGTGCTAACTTGAAGTATGCTTCTTCCCCTTTCAGTCT
AATTCAGAACTTGACTAAGCCTTTTTCCCTTAAATGACGAGGGTAGTAGTTTGCAGCTTTCAAGC
CGGAGTTTGTTGGTTCAGGGCCAGACCGACTACTCCAAGAGCACTCATCCATAAACCGGTCACTG
GCAAAATGAAATATTAAGAGATGTAACCAACGGAAATAGCAAGCCCGAATCTTTGGGACCAGAAG
CGGTTAGCAGTGACCCATAGGTCTCTTCAGCGGTGAAAAGCAAAAGCACGGAATGTAAATTAATT
CCCATCTTCGAATTCAGTCTTCTCTACAGTAGCACCATGAATAGCGCATAGCGGAGCAGCGCCCA
GGAGGCAAGCAACTCCAATCATATGAAATGGGTTCAACAATCAATTATTCAAACAAGAATATCTT
TCTAAAAAAAAGCTGCAAGACCGGTGCAAAAAACCGAAAGTCCTT
Found at i:320930 original size:6 final size:6
Alignment explanation
Indices: 320919--320984 Score: 59
Period size: 6 Copynumber: 11.7 Consensus size: 6
320909 GAATTTCATA
* * *
320919 TGAATT TGAA-T TGAA-A TGAATT TGAATT T-CATA TGAATT TGAATT
1 TGAATT TGAATT TGAATT TGAATT TGAATT TGAATT TGAATT TGAATT
* *
320964 T-CATA TGAATT TGAATT TGAA
1 TGAATT TGAATT TGAATT TGAA
320985 AAATGAAAGC
Statistics
Matches: 47, Mismatches: 10, Indels: 6
0.75 0.16 0.10
Matches are distributed among these distances:
5 15 0.32
6 32 0.68
ACGTcount: A:0.38, C:0.03, G:0.15, T:0.44
Consensus pattern (6 bp):
TGAATT
Left flanking sequence: Indices 320419 -- 320918
GTGGTAGAATTATTCCAAGTATTTCCGCTGGAACTGCTATGTACGTTTTCGATTTTCTATTCACT
CATGATCTGGCCTGGTCGACCCGATCATGATATTTCACTCATGATCTGGCCTGGTCGACCCAATC
ATGATATTGAAGGATGGGACCTTTTCTCGAAAAACTCCGGATCCCGAGAAGAGTGGAAGATGGTG
CAACATCGAATCCTGTTACGTTACTTCGAATGGAATCTTAGCCCGCCTCACTTGACTGAGCATAA
GCGAAGTCAAGGGATTTCCTTCTAACTAGTGGCTGAGAGTAAGCAAGCTACCTTCATTCAACAGA
TTTGTGGTTGAGTCAGCTCCGAGATGAGAAGGCGGAACATTCCCCTTCCACCTTCGCCTTTGACT
ATATAAGGTCGGGAGAGGCTCCCGATTTCTGGTTTATAGGCGATCATATGCCGAAATCAAGTAGA
ACCTTAAGTCCAAGTCAAATAAATAGGGCATGGTTGAATTTCATA
Right flanking sequence: Indices 320985 -- 321484
AAATGAAAGCTGCTTGTTAGGTGTAGTGCTAACTTGAAGTATGCTTCTTCCCCTTTCAGTCTAAT
TCAGAACTTGACTAAGCCTTTTTCCCTTAAATGACGAGGGTAGTAGTTTGCAGCTTTCAAGCCGG
AGTTTGTTGGTTCAGGGCCAGACCGACTACTCCAAGAGCACTCATCCATAAACCGGTCACTGGCA
AAATGAAATATTAAGAGATGTAACCAACGGAAATAGCAAGCCCGAATCTTTGGGACCAGAAGCGG
TTAGCAGTGACCCATAGGTCTCTTCAGCGGTGAAAAGCAAAAGCACGGAATGTAAATTAATTCCC
ATCTTCGAATTCAGTCTTCTCTACAGTAGCACCATGAATAGCGCATAGCGGAGCAGCGCCCAGGA
GGCAAGCAACTCCAATCATATGAAATGGGTTCAACAATCAATTATTCAAACAAGAATATCTTTCT
AAAAAAAAGCTGCAAGACCGGTGCAAAAAACCGAAAGTCCTTAAA
Found at i:343921 original size:20 final size:20
Alignment explanation
Indices: 343896--343936 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
343886 GGCTAGGCAG
*
343896 TGCAACCCGAAAGGTGAGCC
1 TGCAACCCGAAAAGTGAGCC
*
343916 TGCAACCTGAAAAGTGAGCC
1 TGCAACCCGAAAAGTGAGCC
343936 T
1 T
343937 CTCATCATTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.32, C:0.27, G:0.27, T:0.15
Consensus pattern (20 bp):
TGCAACCCGAAAAGTGAGCC
Left flanking sequence: Indices 343396 -- 343895
TCCACCCAAAAGAAAGAGTTCCGATCGGTAGTCAATCTCTAGGCAATCCTTTCCCTCCTTTTCTT
TCCAAGCAATCAATGCGGCTAAGCGAACTAGGTAACCGGGGGGCCCGCCCGACTTCCCTGGGTCG
AGAGGTCAGTCAAACCCTGATCCGGCTGCTCCGGTTGAGCCAATCGAGAGAATGGCCTCAGCTGG
CCTAATAACTGGAAAAGAACTTCCTTGCGTTTAATCAGTCGGTTTCGGCCCTGCCGAACCAAAGG
CTTTGCCAGGCATTTCCCAGTTCTCTCAAAACAAACAACATAAGAAGGATAGGTTGTTACCCCTT
TGCAATAGCGAAGAACTTACTTCGCTTCGTTGAAATGAGCGAATCGAGGGCTCTGGCTCCAGTGT
CCATCTGTGAGGAAAGACCACAACAGCCGAGTATGGTGCCGATGCTTGCAGCTGTCCCCTTGTGA
ACCGGCCATAATCAAGATATTTGCTGGTGTAGAGGGGCTAGGCAG
Right flanking sequence: Indices 343937 -- 344436
CTCATCATTTCATTTGTTTTCACCCTCGTGCCTAAAGTTCCGTTGCGGGAACAAGGTCACTGGAT
GAAGGACCGTTTGAAGTGTTGAGGGAGGAGACTCAACAATATATCCTGGCATTGAGCGTGACGGC
GTCTGTTCTGAACGGGATTTTAAGCGAATTGGACCTTCGTTTCGCTTTCCCAGAGTGAAGCCTCT
CGCTTGAGTTCTTTAGAGGGAACGGTTTAAAGCCGGAACGGAAGCATTCTTGTTGTTCCTTTCTC
ACGAATCTTTTGTGGCCAGGGGGTAGTTTGTGGGCTAGGAGAAAAAAAAGCATAGCGCTTTTGAG
CCCTGCCTCAAAGAGGCGGGGCTACTTCCAGACACTAACTAACTAAGTAGTTATTAACTCGGCTC
CGGGGTTAAAGAAATGAATTCTTCCCAACCAAGCAAAAGGCTTGTTCTAGGACCAGAGGCAAAGG
AGGTAACCGCTGATCCGTGGAAGAAGGCTTACGAATCACAGGCTG
Found at i:357293 original size:26 final size:27
Alignment explanation
Indices: 357264--357321 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 27
357254 GCTCGTTTAG
*
357264 CTAGGG-AAATGCCTTAACGTAAATTC
1 CTAGGGCAAAGGCCTTAACGTAAATTC
** *
357290 CTAGGGCCTAGGGCTTAACGTAAATTC
1 CTAGGGCAAAGGCCTTAACGTAAATTC
357317 CTAGG
1 CTAGG
357322 TTTGAGCAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
26 6 0.22
27 21 0.78
ACGTcount: A:0.29, C:0.21, G:0.24, T:0.26
Consensus pattern (27 bp):
CTAGGGCAAAGGCCTTAACGTAAATTC
Left flanking sequence: Indices 356764 -- 357263
AATACACATCTTGCGGTTCCGTCTTCCGCAAGCAGCGCGTTTAGGTTCAGTGGTCTTATACGACA
TTTGTTGGAACAAGGCCCTAGTAGAGTAATCAGACGATTCTAACCACAAACTCTAACTCTTAATT
CCTGTATTGGGTTTGCACTCATTTTCTTTATCACTTAAAGTTGATGACTAATGAAAATCCCGCGG
TTTGCAACTTCCGAAAAAGGCAAAATTGTTCATGAAAGACAAGACTTTATTCGCATCTACCCTCG
GCAGGGAATAGCCACCTGAAAGCTCATATCTGTGCTCCCTTGCACTCGGTTGAGGTAGGTTTGGT
ATTGCTTGAAAGCAGAGGTGAATAGAGGGGCCCCCTAGCGCCGATTCAAAGGGCTTAGCTGTGAC
TGCCCCATCTCGTTTTAAGTTGAGTTAGGTTTTTGCGTTAACGCCAATGTTGAGAAAGAGATGGG
GGTTGTTGCTTGCCTGAACATTAACCCAATCTTATGCTCGTTTAG
Right flanking sequence: Indices 357322 -- 357821
TTTGAGCAAAGTATAAAGTGGCAAGTTGAGTTAGGCAAAAGCAAATTCAAGTGTTTGGCCACCTT
ATGGATAAATGACTGAAAAAAGGAAAGACGCTAAATAACTAATTACTCTTTACATATTCCTGCCC
TGTCGCTTACAGTCAATCATGCTCTTTCAGTCGAAAGTTGACTTCATCCCCGGTGACCGGTCCAG
TAGGACGCTTTGGGCGGAAACTACTTTTTTATCTGTCGACTGATTGAGCAGGTATACTGTAAGCG
TAAGCGCTTATGATTCTTATTATACGACGCAATTACTGGAATACTGAAATGAATGCTTACAGTTT
ACTTAAAGCTTCACTTCAGCTGATGCGCATTCACATCAGGTTTTCAGATCTTATGCTACACTAAT
AGGTTTAGACAACAACGTGTCAGCAACAGCAAGGTTTGTTTGTTTTCTTATCTATAACTAATGAC
GAGCTTATGCGCCAACCTGAAGCTTAGCACCAGATAACCAAAGAA
Found at i:361048 original size:10 final size:10
Alignment explanation
Indices: 361016--361060 Score: 63
Period size: 10 Copynumber: 4.3 Consensus size: 10
361006 TATATATATA
*
361016 TATATATTTT
1 TATATTTTTT
361026 TATATTATATTT
1 TATATT-T-TTT
361038 TATATTTTTT
1 TATATTTTTT
361048 TATATTTTTT
1 TATATTTTTT
361058 TAT
1 TAT
361061 TAAGTATGAG
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
10 21 0.66
11 2 0.06
12 9 0.28
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (10 bp):
TATATTTTTT
Left flanking sequence: Indices 360516 -- 361015
TCACTCTTCAACTCGGGATGAAATCAGCAACATCAATACCTTAGTTAGTCAGCAACGGGCTCATC
GATTAACTCAAGCATCGGTACGCCCCCTTACTATAGTCCTGACTTACCTCAGGAGATAAAAGAAC
TCAAGGGCAACTCCTAGAACATCACTCTCGTAGCTGCCTTAGGCTCGATAGCTCTCGGAATCAGT
AGCCCATAACATATCATGTCATACCGGGCCTAGGCGTATACCGTCCCATACCGTATCATATCGCC
CGGGGAGCTACGTTCCCGAACCTCACATCAGATTCAATAGCAATTTACATTGCCTCCATTTGCCT
GCTTTAGCCGCTTCAACCCGAGAGTCGCTCAATCAACTACTAGATCCGGAAGTCGAAGGCTAGAA
GCGAGCACATTTGCCTTACGATGGAAGGTACGTAGGTAGATAGACCGCCATGAATGAATGAACTT
CCCCGTAGATACGTAGATAGACGGAACATCTACTATATATATATA
Right flanking sequence: Indices 361061 -- 361560
TAAGTATGAGCGGGACAGCACCGATAACAACCACAACGCCAAAGCCGGTTAATGAACATCCGGTC
TTCGCCTCGCCTGCGATAGAGAATATCCCTACCCGGCTGTTCCGCAGTGTCGCTACTATTAAGTA
AGTAATTAGTTTGATATAGCATAGATAGAGCCCCAAGGGGAGAAGTCAGAAGTATATCATTTCAG
TGCCAGTGGGGCGACCTTCCATCTTTTATAATATAGTTGTTGGTGCAGTTCCTCTCTTTCCTGTC
TCGCCCCTGAGTGTAGTTGATCTAACCTAGTTCTTTCGTTGAGGTATTCAAGTTGAAAGGAAAGC
GTATAAAATAAAGAGGGCCTCAATGGAAGAGCGTATTTGTTGAAAAAGGAGGTTTTCGTTCAGAA
GGCTGACGGGATCCTCGTTTCCGAGAAGAAGAAAACAGGAGGATGGGGCTTGGGATCGGATCTTC
TAAGGCGGACTTTGCCGGGTATGAAGGAATGAGGAGCGCGAAGGG
Found at i:361058 original size:20 final size:22
Alignment explanation
Indices: 361016--361060 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
361006 TATATATATA
361016 TATATATTTTTATATTATATTT
1 TATATATTTTTATATTATATTT
*
361038 TATATTTTTTTATATT-T-TTT
1 TATATATTTTTATATTATATTT
361058 TAT
1 TAT
361061 TAAGTATGAG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 6 0.27
21 1 0.05
22 15 0.68
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (22 bp):
TATATATTTTTATATTATATTT
Left flanking sequence: Indices 360516 -- 361015
TCACTCTTCAACTCGGGATGAAATCAGCAACATCAATACCTTAGTTAGTCAGCAACGGGCTCATC
GATTAACTCAAGCATCGGTACGCCCCCTTACTATAGTCCTGACTTACCTCAGGAGATAAAAGAAC
TCAAGGGCAACTCCTAGAACATCACTCTCGTAGCTGCCTTAGGCTCGATAGCTCTCGGAATCAGT
AGCCCATAACATATCATGTCATACCGGGCCTAGGCGTATACCGTCCCATACCGTATCATATCGCC
CGGGGAGCTACGTTCCCGAACCTCACATCAGATTCAATAGCAATTTACATTGCCTCCATTTGCCT
GCTTTAGCCGCTTCAACCCGAGAGTCGCTCAATCAACTACTAGATCCGGAAGTCGAAGGCTAGAA
GCGAGCACATTTGCCTTACGATGGAAGGTACGTAGGTAGATAGACCGCCATGAATGAATGAACTT
CCCCGTAGATACGTAGATAGACGGAACATCTACTATATATATATA
Right flanking sequence: Indices 361061 -- 361560
TAAGTATGAGCGGGACAGCACCGATAACAACCACAACGCCAAAGCCGGTTAATGAACATCCGGTC
TTCGCCTCGCCTGCGATAGAGAATATCCCTACCCGGCTGTTCCGCAGTGTCGCTACTATTAAGTA
AGTAATTAGTTTGATATAGCATAGATAGAGCCCCAAGGGGAGAAGTCAGAAGTATATCATTTCAG
TGCCAGTGGGGCGACCTTCCATCTTTTATAATATAGTTGTTGGTGCAGTTCCTCTCTTTCCTGTC
TCGCCCCTGAGTGTAGTTGATCTAACCTAGTTCTTTCGTTGAGGTATTCAAGTTGAAAGGAAAGC
GTATAAAATAAAGAGGGCCTCAATGGAAGAGCGTATTTGTTGAAAAAGGAGGTTTTCGTTCAGAA
GGCTGACGGGATCCTCGTTTCCGAGAAGAAGAAAACAGGAGGATGGGGCTTGGGATCGGATCTTC
TAAGGCGGACTTTGCCGGGTATGAAGGAATGAGGAGCGCGAAGGG
Found at i:400783 original size:21 final size:21
Alignment explanation
Indices: 400753--400792 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
400743 GTAGCTTTCG
400753 AGACTAAGAG-TGAGTGAAGCT
1 AGACTAAGAGCT-AGTGAAGCT
*
400774 AGACTGAGAGCTAGTGAAG
1 AGACTAAGAGCTAGTGAAG
400793 GCGTGACGGT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 16 0.94
22 1 0.06
ACGTcount: A:0.38, C:0.10, G:0.35, T:0.17
Consensus pattern (21 bp):
AGACTAAGAGCTAGTGAAGCT
Left flanking sequence: Indices 400253 -- 400752
ATCCATAATCATTCTTAATGCTCTGTCTTTCATACCCAAAGAGTGTTTCCTAGTCAAGCCCTTGA
TTTATTTGCCTGTTCCTAAATTTAGGAGCTCTCTCACGTCTTCGTGATACTAACCCAAGACTCTT
TCGCGAAGAGAATAAATAAACGAAAGAAAGCATAAACCTGTTCAATAGCTCTTTCCAATATAAAG
CGTAACGGCTAGAGAAGGAAGGAGTTCAGTCGTGAAGCTAAGGAGCTCTAGCTTTCTACACTGTG
AGCTAGGCCAGCCGTGAAGCGCAACGAGCTGAGCTGATTGCTTCGATATGAGGATAGCGTAACCA
AGGACTTCTGGCTTCGAGGTGAGTCTAGTCATTAAGCTAAGGAAGGACTTCAGTCGTGAAGCGTA
ACGAGCCAGTCTAGTTTGGCTGGCTTGAAGCGGAACCAGCTTTCCCCGGAGAGCGAGTGAAAGGA
AGGCGCCTTCGTCTTGGGTGGAAGCGGAAGGAGCAGTAGCTTTCG
Right flanking sequence: Indices 400793 -- 401292
GCGTGACGGTGGCGTGAAGCCTTACGAGATCTAGTGAAGTAAAGCGTGCTATCCGTTGGCTTTCT
AGCAGTGCGTGAAATCGCTCTTTGAAGGCCGTTCCGCATGGTATCGCGCGAAGCGCGGGCGAGGA
ATCCTCCGTATATTTGTCGGATATGTCGGACCCTTGCTCTCAGAAGAATGACAGGACTAGAGTCA
AGAACGTGAGTGAAGTGCATAGAATTCAGTGCGGTGACGTGAAGAAAGGGAAGGGACTCTCCCTA
TCGGCCAATGATAATCAAAGGCACTCAGCTAGAGTGGCAAGCCAACCAACAACCATAAGAGCTTG
AAGCACGTTCCGAATCTAAAGAAGCTAGCAGCATAGATAGCTAGACCAAAAGCAGACGCAGCACC
CGAATCAATCCGAAGAGGCAAAATCATCCTATGAAAGATACGCTTACTCAAAAGCATTTGAAGCA
GCTGAATCTAAAACAACAGAGACTGAAGCACCCAAATCCGAAGAT
Found at i:409889 original size:18 final size:18
Alignment explanation
Indices: 409866--409901 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
409856 CTAGGCAGCC
409866 AGTCACTATACCCATAAG
1 AGTCACTATACCCATAAG
*
409884 AGTCACTATAGCCATAAG
1 AGTCACTATACCCATAAG
409902 CCGGGTTCTC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.39, C:0.25, G:0.14, T:0.22
Consensus pattern (18 bp):
AGTCACTATACCCATAAG
Left flanking sequence: Indices 409366 -- 409865
ACCACCAAATGTATGAACCCTATTAAAACGGGAATGAGCTGCCTCTTGCTAGGCTTTGGTGGATC
CATAACAGGAAGCAAGTCGTGAGGGAATAGCTAGTAGTTACCATTAACAGGAGAGAGTTGCCAGT
TCAGTTACAGGTATTTAGCTGCAAGGACAGGTATTGAGTTAAGTGTTTAGCTTAAAGACCGAAAC
CTCCTAACAGAATTAGCAACATACTTCATCCGGAGAGGTTAGCAAGACCGTTTACTGACCGAACT
ATAACTGTTAGTTTAGTGACTGGTTTAGCTGCAAGCCAAGACAGAGACAGGAGTTTATTCACCTT
CACCACTGACCGATTAGGAAGAAATGCTTCTCCTCCAACAACTGTTTACCCAAAGCTAGACTTGC
AGTGAGTCGAGTCTTCCGATCACCTGAGAGTGCCTTCACTCCCATAACTCGACTAGGGGATATAG
ATACCAGTCTAGTCTAATCAGTCTAGTCTTAGCAGCTAGGCAGCC
Right flanking sequence: Indices 409902 -- 410401
CCGGGTTCTCAAACCATGAACAGCTACAAGGAGAGAGAGAAGCCCTTATTCAATGCTTCATTCAT
AGGAGACCACGCAGAGCAGGTGTAGCGTTCGTAGCAACCGAACCATACTACTTGACTATGTCATT
AGTTGAGGAAAGTAAGTCACCCACCAAGTTAATCGATAATTTCTATGCTTGGTTCTAAGATCAAA
ACCTTGACAAGGGGAAAGAGCCTTAACCATATAACTAAGAAAGAGACCCACAGTCTCGTAGCGAC
CGTTAAGCTCGTAGCAAGAAATACGGAGCCATTGCAGATGATTTAGATAGAGGGCGCAGGAAGGT
GTAGGCAGAAGCTTTCTGAGTCGGGGAGTTAGAGAGATTGAATGACCTGGCAGGCAGCAGGGAAT
AGTGGATTCCACTTTATCGGCGATGGCATATAGAACTAATATACTACGGCTCAAAACGGGATATG
CAAGCACGGGATTCCCTACTTCCGGATAGAGAGGAAGCGCTAAGG
Found at i:417977 original size:28 final size:29
Alignment explanation
Indices: 417925--417982 Score: 93
Period size: 28 Copynumber: 2.0 Consensus size: 29
417915 AGTGGCGCTG
417925 CTAGCGCTACAGCCGATTTTCTCT-CAGC
1 CTAGCGCTACAGCCGATTTTCTCTCCAGC
417953 CTAGCGCTACAGCCGA-TTTCATCTCCAGC
1 CTAGCGCTACAGCCGATTTTC-TCTCCAGC
417982 C
1 C
417983 CTTGCCCGGC
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
27 4 0.14
28 19 0.68
29 5 0.18
ACGTcount: A:0.19, C:0.38, G:0.17, T:0.26
Consensus pattern (29 bp):
CTAGCGCTACAGCCGATTTTCTCTCCAGC
Left flanking sequence: Indices 417425 -- 417924
AAGGCCCTTGACACCAGACCTGGAATATTTTAAAAAACGAAAACTCTAGAAGAAGGAATTCTTAA
ACCTCCTGCTGTAGTTTGAGTTTTAACGGTATCTTTCAAATAAGAACTTGGGGGAGCGGCTAAAG
CAATAAATATCTTAATTGAAAACTACTAAAGATTTGCCTCCCCGGTAGGTTAAGGGGTAGGAACA
ACGTGCTGCTTGTAGCGTAGGCTAATCGATCAACTATCCTCCGCTACTGGACGACTGCCCCTAAC
TTTACTGGACCAGGGCTTCCCCCAAGCTGCACTACGTTTCGTCTTCAAAAAACAACTCTCTTCCG
GCCAACTAGCTCAGGAACTCTCGCTCAGTAGCTCACTACTGTTTCCGGACTAAGGCTTTTACCGC
CTGAGACTTTGGGGGCGAGTATTTGCCTACCCGCTCCTGGCGGACAGGGAAGGGAGAGGTATGAG
AAGCATAGTCCTCTCCCTTCCGATCCTTGAACTGGAGTGGCGCTG
Right flanking sequence: Indices 417983 -- 418482
CTTGCCCGGCAGGCGCCCTCACCCTCTTTCGATACTGTGAACCTGAATGGTGGATTGAAAGAAGT
CTGGATCCTTCTGGCCCTTTTACACCTTATCTAGTCAAAGGCAGCAATGAAAGGCTTGATCTCCA
TGTTCGAATTGGGGAAGAGTGAATAGAATCATATTTCTTGACCATTATATATTTTGGAGAAAGGG
AGAGGGAATTGGCATGGAGGAATGGTATTCTGTTAATAAGAGGTGGATCCGGAGCGGAGTCGGGA
GCAAACTCCCTCACCAGGGTGAGGAGTTCTAACTCAGGGAAGAAGGGCGACTATTCCTAAGTAGC
AGAGGGTGCCTTATGTGAATAATCATAATTTGGGATGCGCTATTAAGGAACAAGTACGGGGTCTT
CCAACGCTGTTACAAGGGTGGGCGTACTCAATGAGTTCTATCAATATCCAGTTCCTTCTGTACGT
ACACCCGAAGTTGGGCCGGGTAGACATGAAGTTGAAACTACCACA
Found at i:423050 original size:12 final size:12
Alignment explanation
Indices: 423013--423054 Score: 50
Period size: 12 Copynumber: 3.4 Consensus size: 12
423003 AAGAATAAGA
*
423013 GTTGCTCTTCTT
1 GTTGCTCTTGTT
423025 AGTTGC-CTTAGTT
1 -GTTGCTCTT-GTT
423038 GTTGCTCTTGTT
1 GTTGCTCTTGTT
423050 GTTGC
1 GTTGC
423055 AGTTTGGGAG
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
12 16 0.62
13 10 0.38
ACGTcount: A:0.05, C:0.19, G:0.24, T:0.52
Consensus pattern (12 bp):
GTTGCTCTTGTT
Left flanking sequence: Indices 422513 -- 423012
CAGGGAGGGGCTCTCTCTGAACAACCAACGAAGCAGAAGGCGGTGCGGGAAAATCCAAGCGACAG
AGCCGATTCTTAAGTACCTGACCAGTATGACCTGGTGGGTGCAGCTTGCTCTTGCGTCTATTACG
ATGCTTTAGGTCGCTTTCTTATCTAGAGCGGAACTAGCCTGAAGGAAGGGGCGCTCAACAAGCCA
TGGATAGCTAGCCTTAGCTCGCTTCTGTAACCATGCGGTGCGGGACGATGTGATGAACAATCGTT
CGAGAAGGGAAGGTCTTAGAAAGGGGCTTCGAAAACTTCTCTCTTTACCTACACCTTGAACAAAC
TATTATGCTGATATTGATCGAGTAAGGCTCCACCACCTAAGTGCAAGGAGTTAAGCCGATCGCTT
TATACAGAAGGAGGAGAACGTCCCTAGGGCGGATGGTGACACATGCCGTTGACCACCTCTACCTT
CTGTTATTCTATAATCAAATAGGCCAACGAATAGAAAGAATAAGA
Right flanking sequence: Indices 423055 -- 423554
AGTTTGGGAGGAGGGAAAAGCGAGTCTTAGAGATCAAGCCACTCGCACTTCGGATCACCGGACTA
TAGCTGAGGCCAACCATATGGAGGTAGGGCGCCGCTCACTACAGGGAAATAGGAAAACCCAGCCC
TGATTGAGGTACCGGCTGGAGGAAGTGAGTGTTCTATCGAGGGAAGAACCGTCGATCCAGGCTCT
TAGGCCCTTACGACGATCTACACCTGGCCCTTCTAGGCCTACTTACAACCTCTTGCTTGTCTTAG
GCTCACTTCTTCGCATTCCTACCCATAGAATGAGTTATAGGCTTCTGGAGCAGGGCAACGAAGGC
TGCTTCTCTTCCCCCTAAACAGGCATGTGAGAATCAAGTAAAGGCAGTCAAGTAATGCTGTCGGG
GAGCTAATTCCTCTATTTAAGTAGCTCACCCGTAGAGATATGAGACCCGTTTTCTAGCGATTATA
TTAGTGACTAAGGTAGTCGGCTCGCGAGTTCTCTTTCCTCCACGT
Found at i:425955 original size:15 final size:15
Alignment explanation
Indices: 425935--425965 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
425925 CAGCTACAAA
*
425935 GCCGAAGTCGAAGAC
1 GCCGAAGTCCAAGAC
425950 GCCGAAGTCCAAGAC
1 GCCGAAGTCCAAGAC
425965 G
1 G
425966 AAGCTTGCTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.32, C:0.29, G:0.32, T:0.06
Consensus pattern (15 bp):
GCCGAAGTCCAAGAC
Left flanking sequence: Indices 425435 -- 425934
TTTTTTGTTTCGGATCCAGCAGAAGAAAGAGAAGAATGTGGTGGAAAGAGGTAGCTTGGTATTGA
TCCCATTGGCTCGGCATCAGCATCAATGGCACCACTCGGGTCATATGTCCCAGGTAGAGGTGTAG
GAGAAGGAGTTGAATCGAGGTACTTACTTCCCTCTTCAGTGGATGGAGGAAGGAGAGATGGTTAG
TTCGGGTTACCGGTCAAAGGTTCAATCTCACACTTCGACTTATCGACTTATTTCAATCTCACATT
TCGACTTTAAGATAAGGTCATCCAAGCAAGCACTGATTCCGGGTTCGGTTAAATCAGCTGCAGGA
AACCCCTGACAGCAACTCATAGCTACATTAGCTCAAGCAAGAACAAGAAGCAGCCTTAGCTACAA
AGACGAAGTCAAGGACAAAGTCAAAGACGAAGTCGATCACCAAAGCCGGAGGCTTAGGTATATCC
TGCACTGAAGCGGAAGTCCCAACGGCCGAAGGAAGCAGCTACAAA
Right flanking sequence: Indices 425966 -- 426465
AAGCTTGCTTTGCTCAAGAAAAGAACAAGAAGCTCCACTCGTAGCTGCTAAGTAAAGAGACTCCT
GGCTTAGCCAGTCCCGTGCAAACCCCAACTCGAAGAGCAAACCGAAGGAACTAATGATATTCTTG
CCCCTATCTGAGAACATCTCGACATTGGCAGGCTTACTGAATTAAACCCTTTGCCAAGGCAACTC
CTTAAGCCAAGGACAAGGTCCGAGGGAAGCAAGCCGATTTCATTGTCATAGAAACTCCCCCTTTT
TATGTTCTTTTCGCTATAGACCAATACCTTATTTGAGTCTTATTCACTAAGCGAGTACTTAGACA
TGTACCTAAGAGGATGAGACGGCCTCAGGTCTTATTTCTTATATAAGCTAATCCATGCCCACAAA
TGAAGCAACTGTTCCCTTTGGGGAGTAAGGCTGACCCTTTTCTTTCAATCCTATTGGCCCATTTC
GAGAATAAGAGTAAGCACTCTCCTTGTCATAGTTCGTAATCGAGT
Found at i:466191 original size:37 final size:37
Alignment explanation
Indices: 466150--466249 Score: 129
Period size: 37 Copynumber: 2.8 Consensus size: 37
466140 GAGCGCCTAG
*
466150 CGCGAAAGCCGTAGCGCAACAAACAACGG-TAGAGCAC
1 CGCGAAAGCCGTTGCGCAACAAACAACGGAT-GAGCAC
* *
466187 CGCGAAAGCCGTTGTGCAACAAGCAACGGATGAGCAC
1 CGCGAAAGCCGTTGCGCAACAAACAACGGATGAGCAC
466224 CGC----GCCGTTGCGCAACAAACAACGGA
1 CGCGAAAGCCGTTGCGCAACAAACAACGGA
466250 ACAAGCAACG
Statistics
Matches: 57, Mismatches: 5, Indels: 6
0.84 0.07 0.09
Matches are distributed among these distances:
33 21 0.37
37 35 0.61
38 1 0.02
ACGTcount: A:0.34, C:0.30, G:0.28, T:0.08
Consensus pattern (37 bp):
CGCGAAAGCCGTTGCGCAACAAACAACGGATGAGCAC
Left flanking sequence: Indices 465650 -- 466149
TAACTGTATAGTAAGTGCTGGCTTGTAAAACCAGACTTGGTCTGCCATGGGAGAGCAGAGCAAGT
GAGTGTTGTATCCCGTAATTGTACAGCAATCAAAATTGGGCTGGTGCCCTCCCTTTACCATGTGT
TGTTGTGTGTGTTCTTTCATAGACTGCAAAACAGTGTGTGTATGCGTAGTTGAATAGCCTGACTA
GGAAGGATTTCTAGTGGCATCGCAGGGCAAAAAAAAAGTTGGGCTAAAATTGGACCCTGTGACAG
TTGGTAAAGGGCACCAGAAGATCCGGGAGATGCAAGAATTATAAAGGAATAAGAGCTAGGATTCA
ATACTCTTTTTATTATTTGATTGGAGACTATACGAGACTCTTATACTCAACGGTTTTTGAATTCA
TACGTTCTTTCTGAATATGCGTTCTATACTATATGAATAGCGTTCTATTCCATGTAAGCTCTTCT
CCTAATTCCGAACCGGTACTGAACAAGCTAGGGATGAGCGCCTAG
Right flanking sequence: Indices 466250 -- 466749
ACAAGCAACGGATGAGCGCGCTAGCGCGAAAGCCCCAGTTCGTGTTAATTGCGTGCCGCCTTTAT
ATATATAGGGCGTTTTCTTGCTGCGCGAAAGCCCCAATTCGTTAATAGCGTGCCGCCTTTATATA
TATAGGGCGTTTTCTTGCTTAGTCGAGAGTGCCGAACGTAACGGAGATAAGATAGAGCGGAACGG
AGCTAAAGCAGTCGATAAAGGCGTTGTTTCTTCTCAAGCTCTTTCTCCTTCCTTCCCAACCCTGC
CCTTTTAGCTCTTAGGTAAGTAAGCTCCTTGCTCTTTCTCCGGAAGCTAATCCACCCCAATACAA
CCTGTCTGGCCTTTCACAAATCTTTTCCTTTCTACCTATTTACTCCATGAATTAGCGTCGACCTG
TCTTTTCAGCTTCGACACCAGCGGCTACTTAAGCTGAAGCTCCTGTTCAAGGGAAGGGTTCCAAA
CCAGCCTTAGAACCAACCTTAGACCGGACCCAGAAGCAACCTGAA
Found at i:466380 original size:64 final size:63
Alignment explanation
Indices: 466273--466398 Score: 218
Period size: 62 Copynumber: 2.0 Consensus size: 63
466263 GAGCGCGCTA
* *
466273 GCGCGAAAGCCCCAGTTCGTGTTAATTGCGTGCCGCCTTTATATATATAGGGCGTTTTCTTGCT
1 GCGCGAAAGCCCCAATTCG-GTTAATAGCGTGCCGCCTTTATATATATAGGGCGTTTTCTTGCT
466337 GCGCGAAAGCCCCAATTC-GTTAATAGCGTGCCGCCTTTATATATATAGGGCGTTTTCTTGCT
1 GCGCGAAAGCCCCAATTCGGTTAATAGCGTGCCGCCTTTATATATATAGGGCGTTTTCTTGCT
466399 TAGTCGAGAG
Statistics
Matches: 60, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
62 43 0.72
64 17 0.28
ACGTcount: A:0.19, C:0.24, G:0.24, T:0.33
Consensus pattern (63 bp):
GCGCGAAAGCCCCAATTCGGTTAATAGCGTGCCGCCTTTATATATATAGGGCGTTTTCTTGCT
Left flanking sequence: Indices 465773 -- 466272
CATGTGTTGTTGTGTGTGTTCTTTCATAGACTGCAAAACAGTGTGTGTATGCGTAGTTGAATAGC
CTGACTAGGAAGGATTTCTAGTGGCATCGCAGGGCAAAAAAAAAGTTGGGCTAAAATTGGACCCT
GTGACAGTTGGTAAAGGGCACCAGAAGATCCGGGAGATGCAAGAATTATAAAGGAATAAGAGCTA
GGATTCAATACTCTTTTTATTATTTGATTGGAGACTATACGAGACTCTTATACTCAACGGTTTTT
GAATTCATACGTTCTTTCTGAATATGCGTTCTATACTATATGAATAGCGTTCTATTCCATGTAAG
CTCTTCTCCTAATTCCGAACCGGTACTGAACAAGCTAGGGATGAGCGCCTAGCGCGAAAGCCGTA
GCGCAACAAACAACGGTAGAGCACCGCGAAAGCCGTTGTGCAACAAGCAACGGATGAGCACCGCG
CCGTTGCGCAACAAACAACGGAACAAGCAACGGATGAGCGCGCTA
Right flanking sequence: Indices 466399 -- 466898
TAGTCGAGAGTGCCGAACGTAACGGAGATAAGATAGAGCGGAACGGAGCTAAAGCAGTCGATAAA
GGCGTTGTTTCTTCTCAAGCTCTTTCTCCTTCCTTCCCAACCCTGCCCTTTTAGCTCTTAGGTAA
GTAAGCTCCTTGCTCTTTCTCCGGAAGCTAATCCACCCCAATACAACCTGTCTGGCCTTTCACAA
ATCTTTTCCTTTCTACCTATTTACTCCATGAATTAGCGTCGACCTGTCTTTTCAGCTTCGACACC
AGCGGCTACTTAAGCTGAAGCTCCTGTTCAAGGGAAGGGTTCCAAACCAGCCTTAGAACCAACCT
TAGACCGGACCCAGAAGCAACCTGAAGAGAAAGCCCCCAACTCCCCGAGACAGCTATTGGCATCA
GGGGGCAGCGATGACCAGGACCCTTTATCATAACTTCTGCTCGTTGCATACCCTGCCATACTCCC
ACGAAAAGCCTTTGATCTCCCACCCAACCCGATCCACTATTAGAA
Found at i:491993 original size:18 final size:18
Alignment explanation
Indices: 491970--492004 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
491960 AAGGCCCCAT
*
491970 CCTTTGACTTGTGATTGG
1 CCTTTGACTTGCGATTGG
491988 CCTTTGACTTGCGATTG
1 CCTTTGACTTGCGATTG
492005 ATTAGCTCTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.11, C:0.20, G:0.26, T:0.43
Consensus pattern (18 bp):
CCTTTGACTTGCGATTGG
Left flanking sequence: Indices 491470 -- 491969
CGGATTTCGCCCCGGCTCGTACACCGCCCTGCACTGTAGGAATAGGAAGAGAATCCCTCCCTCCA
GGGAACAGCGTCCCTAGTCCGTAAGAGTGTCTAAAACCTGCCTCCCTCCAAACTAGTCCATTAGT
GGGTCTAGCCTTCCCTCTCGCCAGTCTCGTCTCAGTCTAGAGTCTACAATCCCTGTCCCTTCGGT
TAGCAGTGAACGGAACTATTGTTGCAGGTAGGTTAGGTCCCTATCTCGTGACTTGTTATATAGGC
ACGAAACCATTCCAGCCAGCAAAGGGCTTCGCCTCTGAGTTAACGGCCTTCATCTGGCTCGTGTC
CCGCAAGGTTGAAAATCCAGCTTCTTGACCTTTTGTTCTGAAACAAAGTGATGAGTGGCGCCAGG
CCACCGCATCCCAACCATTGATAGCTACCAGAACGAACGTACATTAGCCTCCAGGCTTCTCCTCG
GCGGATTCCCCCCCTTTATAGCATGAAGGAGCAGCAAGGCCCCAT
Right flanking sequence: Indices 492005 -- 492504
ATTAGCTCTAGTATCCATCCCTCACTATGTGAGTCTCTCCTCGCCCTAACGTAGTTTCAAACAGT
TCCCAGTCAATTCTTAATGGTACATTGGAACACACCACCTGAAGCCTGTTAGAGCTAAGGGCTGG
GGAATAGTAATAGGAATTAAGACTCAATCCTTTTAGATTGCCCTTCCTTCTTGGAAGAAAGCCTT
GGTTGAGCGGTGGATCAGGGAGTGACTCGACTGTGTTGGAGAGGTAAGCGATCAAACGGAAGAGA
GCTACCCTCAAGCTAAAGACGGAACTACTCGCTCTTCTCATTCTGTTGCTTGGTCAGTTTCGGTG
TGTTACACCGGCCTTCGGACGGACTATTCACAGGCACCGAGCCTGTTTTCTTTCCTTTCCGCGCT
AGGGCCTAGGTCAGCCGACTCTCTTGCTATGGCCTACGATTGCTTGACTCCCCCTCTATCTTCTC
TTCTTCTTCTGCCTCCTGAGCCTCCGTTTGCTCCTACTGTTGCGG
Found at i:520516 original size:21 final size:21
Alignment explanation
Indices: 520486--520525 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
520476 GTAGCTTTCG
520486 AGACTAAGAG-TGAGTGAAGCT
1 AGACTAAGAGCT-AGTGAAGCT
*
520507 AGACTGAGAGCTAGTGAAG
1 AGACTAAGAGCTAGTGAAG
520526 GCGTGACGGT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 16 0.94
22 1 0.06
ACGTcount: A:0.38, C:0.10, G:0.35, T:0.17
Consensus pattern (21 bp):
AGACTAAGAGCTAGTGAAGCT
Left flanking sequence: Indices 519986 -- 520485
ATCCATAATCATTCTTAATGCTCTGTCTTTCATACCCAAAGAGTGTTTCCTAGTCAAGCCCTTGA
TTTATTTGCCTGTTCCTAAATTTAGGAGCTCTCTCACGTCTTCGTGATACTAACCCAAGACTCTT
TCGCGAAGAGAATAAATAAACGAAAGAAAGCATAAACCTGTTCAATAGCTCTTTCCAATATAAAG
CGTAACGGCTAGAGAAGGAAGGAGTTCAGTCGTGAAGCTAAGGAGCTCTAGCTTTCTACACTGTG
AGCTAGGCCAGCCGTGAAGCGCAACGAGCTGAGCTGATTGCTTCGATATGAGGATAGCGTAACCA
AGGACTTCTGGCTTCGAGGTGAGTCTAGTCATTAAGCTAAGGAAGGACTTCAGTCGTGAAGCGTA
ACGAGCCAGTCTAGTTTGGCTGGCTTGAAGCGGAACCAGCTTTCCCCGGAGAGCGAGTGAAAGGA
AGGCGCCTTCGTCTTGGGTGGAAGCGGAAGGAGCAGTAGCTTTCG
Right flanking sequence: Indices 520526 -- 521025
GCGTGACGGTGGCGTGAAGCCTTACGAGATCTAGTGAAGTAAAGCGTGCTATCCGTTGGCTTTCT
AGCAGTGCGTGAAATCGCTCTTTGAAGGCCGTTCCGCATGGTATCGCGCGAAGCGCGGGCGAGGA
ATCCTCCGTATATTTGTCGGATATGTCGGACCCTTGCTCTCAGAAGAATGACAGGACTAGAGTCA
AGAACGTGAGTGAAGTGCATAGAATTCAGTGCGGTGACGTGAAGAAAGGGAAGGGACTCTCCCTA
TCGGCCAATGATAATCAAAGGCACTCAGCTAGAGTGGCAAGCCAACCAACAACCATAAGAGCTTG
AAGCACGTTCCGAATCTAAAGAAGCTAGCAGCATAGATAGCTAGACCAAAAGCAGACGCAGCACC
CGAATCAATCCGAAGAGGCAAAATCATCCTATGAAAGATACGCTTACTCAAAAGCATTTGAAGCA
GCTGAATCTAAAACAACAGAGACTGAAGCACCCAAATCCGAAGAT
Found at i:529622 original size:18 final size:18
Alignment explanation
Indices: 529599--529634 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
529589 CTAGGCAGCC
529599 AGTCACTATACCCATAAG
1 AGTCACTATACCCATAAG
*
529617 AGTCACTATAGCCATAAG
1 AGTCACTATACCCATAAG
529635 CCGGGTTCTC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.39, C:0.25, G:0.14, T:0.22
Consensus pattern (18 bp):
AGTCACTATACCCATAAG
Left flanking sequence: Indices 529099 -- 529598
ACCACCAAATGTATGAACCCTATTAAAACGGGAATGAGCTGCCTCTTGCTAGGCTTTGGTGGATC
CATAACAGGAAGCAAGTCGTGAGGGAATAGCTAGTAGTTACCATTAACAGGAGAGAGTTGCCAGT
TCAGTTACAGGTATTTAGCTGCAAGGACAGGTATTGAGTTAAGTGTTTAGCTTAAAGACCGAAAC
CTCCTAACAGAATTAGCAACATACTTCATCCGGAGAGGTTAGCAAGACCGTTTACTGACCGAACT
ATAACTGTTAGTTTAGTGACTGGTTTAGCTGCAAGCCAAGACAGAGACAGGAGTTTATTCACCTT
CACCACTGACCGATTAGGAAGAAATGCTTCTCCTCCAACAACTGTTTACCCAAAGCTAGACTTGC
AGTGAGTCGAGTCTTCCGATCACCTGAGAGTGCCTTCACTCCCATAACTCGACTAGGGGATATAG
ATACCAGTCTAGTCTAATCAGTCTAGTCTTAGCAGCTAGGCAGCC
Right flanking sequence: Indices 529635 -- 530134
CCGGGTTCTCAAACCATGAACAGCTACAAGGAGAGAGAGAAGCCCTTATTCAATGCTTCATTCAT
AGGAGACCACGCAGAGCAGGTGTAGCGTTCGTAGCAACCGAACCATACTACTTGACTATGTCATT
AGTTGAGGAAAGTAAGTCACCCACCAAGTTAATCGATAATTTCTATGCTTGGTTCTAAGATCAAA
ACCTTGACAAGGGGAAAGAGCCTTAACCATATAACTAAGAAAGAGACCCACAGTCTCGTAGCGAC
CGTTAAGCTCGTAGCAAGAAATACGGAGCCATTGCAGATGATTTAGATAGAGGGCGCAGGAAGGT
GTAGGCAGAAGCTTTCTGAGTCGGGGAGTTAGAGAGATTGAATGACCTGGCAGGCAGCAGGGAAT
AGTGGATTCCACTTTATCGGCGATGGCATATAGAACTAATATACTACGGCTCAAAACGGGATATG
CAAGCACGGGATTCCCTACTTCCGGATAGAGAGGAAGCGCTAAGG
Found at i:564137 original size:25 final size:25
Alignment explanation
Indices: 564107--564162 Score: 103
Period size: 25 Copynumber: 2.2 Consensus size: 25
564097 TTCTGAACGA
564107 AAGCCTTACATTCACTATGAATAAG
1 AAGCCTTACATTCACTATGAATAAG
*
564132 ATGCCTTACATTCACTATGAATAAG
1 AAGCCTTACATTCACTATGAATAAG
564157 AAGCCT
1 AAGCCT
564163 AATGCATTCC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.38, C:0.21, G:0.12, T:0.29
Consensus pattern (25 bp):
AAGCCTTACATTCACTATGAATAAG
Left flanking sequence: Indices 563607 -- 564106
GCCAACTCGATTGCATCGATCCTTCTCTATTCTAGGAGCACCCAATCCTGTCATTCTCTTGTAAA
GTGGACGATTTCATCATAACAAGGAGAACCCAGTACAAAGATAGATCCATTCGCTGAGCTCGAGA
GAGCGTTTTGAACATTAACAAGAATTTACCACTGCACAATCATTTCAATTAGGATCTGCACCAGT
AGCTCTCAGCTGCTACAATTGCTTTAGTGGGAGCACCGGTAGAAAAACTGGCGGTCAGCACCCCC
GAGCACAGCCCTCAACACGCAATATTGATTGTCAGGCCACGCTGTCAGGAACACAACGGATTGCA
TCCCGAGCGTTAGGTGAAGAGGTACGTCAAGGTATCCGAAATGAAAAGAATCCGCTTTACAATAG
CCTTTAGTTTCATGTCATTAAAGAGGTCGACGTAGCGAACCAGGTTCTTCTAACTCAAGTCAGTA
GTGAATGGAAGAGCGTATTTGTTGAAAAAGGAGCCTTCTGAACGA
Right flanking sequence: Indices 564163 -- 564662
AATGCATTCCAATCAACCACTTGAAGAACTTCTCATAGAAAGCAGATTTTAGACTGTTTATCAAG
AACTTCATAAACAGAGATCTAAAACTATTATTCCCGACTCTCGCTTCAAAGACAGTTTAAGGAGA
AATCCGGAAGACCTCCTAATAATTTTTATCTAGTCTAGGCTTGCTTCTTTTCCCTCGAATAGAGC
CACCTACGAATGTTTGGGATCACTTCGCCCCTGAACCTTCAATCTCCTTGGGCTTTAAGGAAGTG
GATGGGAAATCAAACCATAAGATGACTCGTACTTCGATCCCCTGGCACTTGGTTTTGAGCTCTCT
ATTTCTTATGGAGAGACAGCCCCTTCCCTCTTTTATACACCATTCATCGCTCCTCATCCCGTGGG
TTCTGCGGGAAAGGAGATAGGGAGAAGCCCCGGCCGTTTTCTTTGGCTTTGACCTCGGGATGCAC
GCAATGTGGGCGGTGTGTCAGGGAGCCTTTGCCTTCTTCGAAAAG
Found at i:575104 original size:27 final size:27
Alignment explanation
Indices: 575054--575106 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
575044 TCAACCGATA
**
575054 GTAAATCTTCCGAACTGAGTGTGAATT
1 GTAAATCTTCCGAACTGACCGTGAATT
* *
575081 GTAAATGTTCGGAACTGACCGTGAAT
1 GTAAATCTTCCGAACTGACCGTGAAT
575107 GAGAGTCTGC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.30
Consensus pattern (27 bp):
GTAAATCTTCCGAACTGACCGTGAATT
Left flanking sequence: Indices 574554 -- 575053
CCTTCTTGGAAAATTGGCATATTAGTTCCTGCCCTTACTAAGCTTTCAGTGTCCTATCCAAACCT
CCCTCACAATCTCTGCACGTGGACTGATTATACTCCCTATCGCCCCGAAGTGACTTCTGCGGCAT
CCCCGATCTTTCAATAAAACGCGAATCTAAAGCCTATGATTCCACTTGCAAACAAGCCATTCGCT
TCCGTCAGGGGATTTGCCCACTGCTCTTCCTAAGACCGGTAATCCCGCATCTATTGATTCAATTG
GGCTTGGACCGGTAATTCCATCAAAGCACCTTCGACCTTCCCTAGTTTCGAATCTAGTCTCGGCA
TCAATCCTCTTCGGGGATATCTTTAATATCAAGTGGATCAACTATTCACATATATGATGCAAAAC
TGGAATGAAGCAGTAATAGTAGTTCGGGCACTTCGAAATCTTTTTCTTTTCGACTCTTTGTAAAA
CGTCGCATTCAATCTCTAGTTGTAAACCCTTCTATTCAACCGATA
Right flanking sequence: Indices 575107 -- 575606
GAGAGTCTGCCTTGTCCAGAATTGTCCTCTCTCCTAACAACAGGAGGTTTCATTAGCCAGACATT
GACTTTGTTCAGAAACAGGCTTCTCGAGCCTCTCTCTACTCGATTTACCAGAGCCATTTGCTTAA
GACCAACCTTTGTTGTTGTCTAACCACCCCTTAATCTTAATAAAGTGAACGTCCCATACTTTACC
ATTTCACTTTATTAAGCTCGTAGATAGAATACAATTGCGAGTACTGTCCTATCCTTATGAAGCAA
GGAAATCCCTCGGGGGTTATAATTAAAGTACCAAAGGTAAGAAAGTACAGGCGGACGTTACTTGA
TGCTATCAACCTCTCGTCCGGTGATAGCAATATAGGCACTCACTATTTCCGATAGGCATGAATTT
CTTATCTTATATATATAAGGACCAACGACGATCCTATCCTAAAGGAGAAGGAGGAGGAGGAGCCA
ACTCGAGAAAGGAAAACAATAGTCAAAGGAAGGATCCAGAATGTC
Found at i:579804 original size:63 final size:64
Alignment explanation
Indices: 579697--579817 Score: 199
Period size: 63 Copynumber: 1.9 Consensus size: 64
579687 TAGCGCTACC
* * *
579697 AGCCCCAGTTCGTGTTAATTGCGTGCCGCCTTTATATATATAGGGCGTTTTCTTGCTGCGCGAA
1 AGCCCCAATTCGTGTTAATAGCGTGCAGCCTTTATATATATAGGGCGTTTTCTTGCTGCGCGAA
*
579761 AGCCCCAATTCGTGTTAATAGCGT-TAGCCTTTATATATATAGGGCGTTTTCTTGCTG
1 AGCCCCAATTCGTGTTAATAGCGTGCAGCCTTTATATATATAGGGCGTTTTCTTGCTG
579818 GATTGCGCTT
Statistics
Matches: 53, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
63 31 0.58
64 22 0.42
ACGTcount: A:0.19, C:0.21, G:0.23, T:0.36
Consensus pattern (64 bp):
AGCCCCAATTCGTGTTAATAGCGTGCAGCCTTTATATATATAGGGCGTTTTCTTGCTGCGCGAA
Left flanking sequence: Indices 579197 -- 579696
CAGGTAGTGAGACCTCTACTTCTTATTGCTGTCTTTGGTGTTGTTAGCAGTTTACTCGTAGCTCC
AGTTGTCTAAAACCTCTTCCTCTTCCTTTAGCTTCCGAAACCCTTTCCGAAGCTTTTAGTCGAGT
TTCGTCGAGAAAGGGTGTTCTCCTGTATGAATCTGACTAGTCCTTTAGTCACTTTAGCTTGATGG
CGAAGCACGGAATACCAGCTTAAGCTCACGTTTTTCATCTGCTACTCGACTCGCTACAACAGCTG
CTAGCCCCTATTAGCTTACTAGTGAGCTAATAGGGCAAGAACAACTACCTGACAAGCGCACCCAG
CAAGAGCAATTCGTTAGTTTAGTAAAGGGCGTTCGCTTTTGACGTTTATTAACGAATTGCTCTAC
TATAGACATTTTGGGGATTGCGGCATCTAGGGGCGCTTACTAACGAATTGGCAACTAATGAATCT
AAACAAGCAACGGAACAAGCAAGGGATGAGCGCCCTAGCGCTACC
Right flanking sequence: Indices 579818 -- 580317
GATTGCGCTTAAATTGCTGAAGTTAGTGCGGATGAGAAAAACGGACGCGGCAGGTTGCTAGCGGA
AGTAGCGCGTTAGCCTTTACCTCTCTTCCCTTAATGCGCCAAGGGACTCAGCAAGGTACCACTTG
CCTAACATTGCCTAACTGCTGCAAAAGGAAGAGCTACAAGCCGACCGAACTGCCTATCTCGAACG
TGGCTGACCTAGCTGCTAGAAGAGCAGCTAAAGCAGCTTCTTCAGATGCCGGGTTTTCTCTATCC
TATCTATTTGAGCGTTTTCTCTTTCACTTTTCTATTTTTTCTATAGTCAGAAAAAATTCCCTTCC
CCATTGTATGATTGCATATAAAACTAAGGCAACCTACAACCAATCTACTATTGCGATGCGACTAA
TGCTGCCAGCTAAGGCAAGAAGCGCTACCAACCCTTAGCCCAACTAGAGCTACAAGACCAGAGGA
GCTAGCTACAAGAGCTGCCCTACCTAACAGCTAACCGTTCCTCCC
Found at i:581717 original size:9 final size:9
Alignment explanation
Indices: 581703--581772 Score: 122
Period size: 9 Copynumber: 7.8 Consensus size: 9
581693 TAGTTCGATC
581703 CTTTTGATT
1 CTTTTGATT
*
581712 CTTTTGATC
1 CTTTTGATT
581721 CTTTTGATT
1 CTTTTGATT
*
581730 CTTTTGATC
1 CTTTTGATT
581739 CTTTTGATT
1 CTTTTGATT
581748 CTTTTGATT
1 CTTTTGATT
581757 CTTTTGATT
1 CTTTTGATT
581766 CTTTTGA
1 CTTTTGA
581773 CTTGCTCTTT
Statistics
Matches: 57, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 57 1.00
ACGTcount: A:0.11, C:0.14, G:0.11, T:0.63
Consensus pattern (9 bp):
CTTTTGATT
Left flanking sequence: Indices 581203 -- 581702
TTTCCCGAGAGAGAAATACACCTCTACATGCTTCTCTCAGGCCAGCAGTCTTTTACTTCTAGTCG
ACTGCTCTATGACGGGCTTCCCTGTTTCCTGGGCTCTGCTCGCTCGTCTACGCTCCGACCCAGCA
AGTCATAATTGAAAAACGATGTTTCCTGATTTAAAACTTGTCGTAAAAAAGGCGGAATAAAAAAA
AATGGAAATAGTGAATCAAGATCTAGATGGATCCCTATCTTTATCTCTATCCACGGAGATACCTA
TCTATATGGAGAGAGATCTATCTATGAATCGATCTAGACTATCCTCTATCCGGATAGATATGTCC
GAGCGACTACGCCGATCTTTATATGTTTTGGCCACGTCCGTTTCCGCTCCGAAGATGAAGGTGTG
GATCTTTCAATCTTATGTCGTGAGGGATGTGACCTATGTTAGGTCCATAAGATACCACAGCTTTT
GGTGTTCTATGATTAACCTCCGAATAATTATTAGGTAGTTCGATC
Right flanking sequence: Indices 581773 -- 582272
CTTGCTCTTTTATTGAATAGTGCCGGAATTGCCGCGAATCCCTTGCTTCTTGGCTCCGTTCTCTA
CACATATATGTCCGGATGCGATCGGTGATTCTTTTGATTCTTCTCTTCCTAGTAAACTGATGGGG
GGATCCGGAGCAATAGGTCGAAACTATATATAAAACAGAGTTTTGAACTAGTAGTCGAAGATTTC
GGTTTTTCTCGTTTTTCTTATCGAAGAGAAGGAACGATTTGAAATGAGACAAATTTTGCTTCATT
CTGTTGTGCTCAGCGAAGGAACTGCCTAAGCATACTTTTTTTTCGGATCCAAACTTCTTTGTTCT
TTCTAAGTCTTTTTCTTGCATAGAAGAACGCAACCGTTGCAAAAACGGGGATTTTAGTAGTAGGC
GGCACCCCCTCTTAGTTTTGAGTAGGCGGAACCATTCTGTTTTGGTTCTTCTCCACATTCTTACC
TTTTTATTCAGGAATTTTCCTATGATTTTTTCAACTGATATGTCG
Found at i:581722 original size:18 final size:18
Alignment explanation
Indices: 581699--581772 Score: 139
Period size: 18 Copynumber: 4.1 Consensus size: 18
581689 TAGGTAGTTC
581699 GATCCTTTTGATTCTTTT
1 GATCCTTTTGATTCTTTT
581717 GATCCTTTTGATTCTTTT
1 GATCCTTTTGATTCTTTT
581735 GATCCTTTTGATTCTTTT
1 GATCCTTTTGATTCTTTT
*
581753 GATTCTTTTGATTCTTTT
1 GATCCTTTTGATTCTTTT
581771 GA
1 GA
581773 CTTGCTCTTT
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
18 55 1.00
ACGTcount: A:0.12, C:0.15, G:0.12, T:0.61
Consensus pattern (18 bp):
GATCCTTTTGATTCTTTT
Left flanking sequence: Indices 581199 -- 581698
CATGTTTCCCGAGAGAGAAATACACCTCTACATGCTTCTCTCAGGCCAGCAGTCTTTTACTTCTA
GTCGACTGCTCTATGACGGGCTTCCCTGTTTCCTGGGCTCTGCTCGCTCGTCTACGCTCCGACCC
AGCAAGTCATAATTGAAAAACGATGTTTCCTGATTTAAAACTTGTCGTAAAAAAGGCGGAATAAA
AAAAAATGGAAATAGTGAATCAAGATCTAGATGGATCCCTATCTTTATCTCTATCCACGGAGATA
CCTATCTATATGGAGAGAGATCTATCTATGAATCGATCTAGACTATCCTCTATCCGGATAGATAT
GTCCGAGCGACTACGCCGATCTTTATATGTTTTGGCCACGTCCGTTTCCGCTCCGAAGATGAAGG
TGTGGATCTTTCAATCTTATGTCGTGAGGGATGTGACCTATGTTAGGTCCATAAGATACCACAGC
TTTTGGTGTTCTATGATTAACCTCCGAATAATTATTAGGTAGTTC
Right flanking sequence: Indices 581773 -- 582272
CTTGCTCTTTTATTGAATAGTGCCGGAATTGCCGCGAATCCCTTGCTTCTTGGCTCCGTTCTCTA
CACATATATGTCCGGATGCGATCGGTGATTCTTTTGATTCTTCTCTTCCTAGTAAACTGATGGGG
GGATCCGGAGCAATAGGTCGAAACTATATATAAAACAGAGTTTTGAACTAGTAGTCGAAGATTTC
GGTTTTTCTCGTTTTTCTTATCGAAGAGAAGGAACGATTTGAAATGAGACAAATTTTGCTTCATT
CTGTTGTGCTCAGCGAAGGAACTGCCTAAGCATACTTTTTTTTCGGATCCAAACTTCTTTGTTCT
TTCTAAGTCTTTTTCTTGCATAGAAGAACGCAACCGTTGCAAAAACGGGGATTTTAGTAGTAGGC
GGCACCCCCTCTTAGTTTTGAGTAGGCGGAACCATTCTGTTTTGGTTCTTCTCCACATTCTTACC
TTTTTATTCAGGAATTTTCCTATGATTTTTTCAACTGATATGTCG
Found at i:617177 original size:17 final size:17
Alignment explanation
Indices: 617155--617195 Score: 82
Period size: 17 Copynumber: 2.4 Consensus size: 17
617145 TAGGGCATGG
617155 TTGAATTTCATATGAAT
1 TTGAATTTCATATGAAT
617172 TTGAATTTCATATGAAT
1 TTGAATTTCATATGAAT
617189 TTGAATT
1 TTGAATT
617196 GAAATTCATG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 24 1.00
ACGTcount: A:0.34, C:0.05, G:0.12, T:0.49
Consensus pattern (17 bp):
TTGAATTTCATATGAAT
Left flanking sequence: Indices 616655 -- 617154
CTCTAGTCCTCTTATTTCCTCTTCTTCTTTCGGTGGAGCTTCCTCTCTAGGTTCTTCTTGCAGCC
TTATCCCTTTTCCAAATTCTTCTTCCCTTAGGATCGCCTTTGGAAGCCGTAACGTAGGGGTCATG
ATGATCCAGTGGGAGGGATCTTCCTCACAAAGCCAGATAGCATTAATAGCTTTAATTGTAGTGAT
GGTAGGGGATGTTGGAAATCGGACACTTCCTCGGCCCAGCATGTTGAGACCGGAGCGTGACTAGG
GGGCTGCTCTATTCTCCCATTTTTTCGTTGGGGTTCTTAGGAGCTTCCTGTTCATCCGCCACGTT
GATTTTTCCTTCTTCTATGAAATCTTGCATTTTGTGCTTCAGCGCGGAACATTCCCCTTCCACCT
TCGCCTTTGACTATATAAGGTCGGGAGAGGCTCCCGATTTCTGGTTTATAGGCGATCATATGCCG
AAATCAAGTAGAACCTTAAGTCCAAGTCAAATAAATAGGGCATGG
Right flanking sequence: Indices 617196 -- 617695
GAAATTCATGTGAATATGAATTTGAATTTCATTTGAAAAATGAAAGCTGCTTGTTAGGTGTAGTG
CTAACGCAACGCCTCCACTTGCGTAGTAGTTTGCTCCTACGTTTGCAGGCTCGGCAAAAACGAGA
CTAGGGACTATGAACCCTACCATATTCCTAAATCATTATTTTTTAGAGAATGCTCCCCGCTTTTT
TCCTGTGGTTACTATTAGAACACAAGCCAAGGAACTAAAAACCACAGCACAAGCACCTACTGAGA
TGAGCCCTTTGCTTCCGGTAAGGAAAATAGTACCCCATAGTAAACGTAGAACGCGAGCGTTGAGG
CCAATGTGCCCCGGCTGGCTGGTGGCATGACTTGACTGTAATGAGTAAGAAGGGATTAAGGAACT
ACTCAAACAGCGATTCCCGTTTTTGGGCTAGTTGACTCTTAGCTTCCAGCGAGCTACGTGCATCA
GCTTTTTTTGACAAACGATTCCTCCCGTGTGAAGTATCTTCTCGA
Found at i:617203 original size:22 final size:23
Alignment explanation
Indices: 617164--617232 Score: 95
Period size: 23 Copynumber: 3.0 Consensus size: 23
617154 GTTGAATTTC
617164 ATATGAATTTGAATTTCATATGA
1 ATATGAATTTGAATTTCATATGA
* * *
617187 ATTTGAA-TTGAAATTCATGTGA
1 ATATGAATTTGAATTTCATATGA
*
617209 ATATGAATTTGAATTTCATTTGA
1 ATATGAATTTGAATTTCATATGA
617232 A
1 A
617233 AAATGAAAGC
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
22 19 0.49
23 20 0.51
ACGTcount: A:0.38, C:0.04, G:0.14, T:0.43
Consensus pattern (23 bp):
ATATGAATTTGAATTTCATATGA
Left flanking sequence: Indices 616664 -- 617163
TCTTATTTCCTCTTCTTCTTTCGGTGGAGCTTCCTCTCTAGGTTCTTCTTGCAGCCTTATCCCTT
TTCCAAATTCTTCTTCCCTTAGGATCGCCTTTGGAAGCCGTAACGTAGGGGTCATGATGATCCAG
TGGGAGGGATCTTCCTCACAAAGCCAGATAGCATTAATAGCTTTAATTGTAGTGATGGTAGGGGA
TGTTGGAAATCGGACACTTCCTCGGCCCAGCATGTTGAGACCGGAGCGTGACTAGGGGGCTGCTC
TATTCTCCCATTTTTTCGTTGGGGTTCTTAGGAGCTTCCTGTTCATCCGCCACGTTGATTTTTCC
TTCTTCTATGAAATCTTGCATTTTGTGCTTCAGCGCGGAACATTCCCCTTCCACCTTCGCCTTTG
ACTATATAAGGTCGGGAGAGGCTCCCGATTTCTGGTTTATAGGCGATCATATGCCGAAATCAAGT
AGAACCTTAAGTCCAAGTCAAATAAATAGGGCATGGTTGAATTTC
Right flanking sequence: Indices 617233 -- 617732
AAATGAAAGCTGCTTGTTAGGTGTAGTGCTAACGCAACGCCTCCACTTGCGTAGTAGTTTGCTCC
TACGTTTGCAGGCTCGGCAAAAACGAGACTAGGGACTATGAACCCTACCATATTCCTAAATCATT
ATTTTTTAGAGAATGCTCCCCGCTTTTTTCCTGTGGTTACTATTAGAACACAAGCCAAGGAACTA
AAAACCACAGCACAAGCACCTACTGAGATGAGCCCTTTGCTTCCGGTAAGGAAAATAGTACCCCA
TAGTAAACGTAGAACGCGAGCGTTGAGGCCAATGTGCCCCGGCTGGCTGGTGGCATGACTTGACT
GTAATGAGTAAGAAGGGATTAAGGAACTACTCAAACAGCGATTCCCGTTTTTGGGCTAGTTGACT
CTTAGCTTCCAGCGAGCTACGTGCATCAGCTTTTTTTGACAAACGATTCCTCCCGTGTGAAGTAT
CTTCTCGATTCCTCCACAACTCAAAGTAGTCCGTCAACTGAACTT
Found at i:617231 original size:11 final size:11
Alignment explanation
Indices: 617170--617232 Score: 54
Period size: 11 Copynumber: 5.6 Consensus size: 11
617160 TTTCATATGA
617170 ATTTGAATTTC
1 ATTTGAATTTC
* *
617181 ATATGAATTTG
1 ATTTGAATTTC
* *
617192 AATTGAAATTC
1 ATTTGAATTTC
* **
617203 ATGTGAATATGA
1 ATTTGAAT-TTC
617215 ATTTGAATTTC
1 ATTTGAATTTC
617226 ATTTGAA
1 ATTTGAA
617233 AAATGAAAGC
Statistics
Matches: 37, Mismatches: 14, Indels: 2
0.70 0.26 0.04
Matches are distributed among these distances:
11 29 0.78
12 8 0.22
ACGTcount: A:0.37, C:0.05, G:0.14, T:0.44
Consensus pattern (11 bp):
ATTTGAATTTC
Left flanking sequence: Indices 616670 -- 617169
TTCCTCTTCTTCTTTCGGTGGAGCTTCCTCTCTAGGTTCTTCTTGCAGCCTTATCCCTTTTCCAA
ATTCTTCTTCCCTTAGGATCGCCTTTGGAAGCCGTAACGTAGGGGTCATGATGATCCAGTGGGAG
GGATCTTCCTCACAAAGCCAGATAGCATTAATAGCTTTAATTGTAGTGATGGTAGGGGATGTTGG
AAATCGGACACTTCCTCGGCCCAGCATGTTGAGACCGGAGCGTGACTAGGGGGCTGCTCTATTCT
CCCATTTTTTCGTTGGGGTTCTTAGGAGCTTCCTGTTCATCCGCCACGTTGATTTTTCCTTCTTC
TATGAAATCTTGCATTTTGTGCTTCAGCGCGGAACATTCCCCTTCCACCTTCGCCTTTGACTATA
TAAGGTCGGGAGAGGCTCCCGATTTCTGGTTTATAGGCGATCATATGCCGAAATCAAGTAGAACC
TTAAGTCCAAGTCAAATAAATAGGGCATGGTTGAATTTCATATGA
Right flanking sequence: Indices 617233 -- 617732
AAATGAAAGCTGCTTGTTAGGTGTAGTGCTAACGCAACGCCTCCACTTGCGTAGTAGTTTGCTCC
TACGTTTGCAGGCTCGGCAAAAACGAGACTAGGGACTATGAACCCTACCATATTCCTAAATCATT
ATTTTTTAGAGAATGCTCCCCGCTTTTTTCCTGTGGTTACTATTAGAACACAAGCCAAGGAACTA
AAAACCACAGCACAAGCACCTACTGAGATGAGCCCTTTGCTTCCGGTAAGGAAAATAGTACCCCA
TAGTAAACGTAGAACGCGAGCGTTGAGGCCAATGTGCCCCGGCTGGCTGGTGGCATGACTTGACT
GTAATGAGTAAGAAGGGATTAAGGAACTACTCAAACAGCGATTCCCGTTTTTGGGCTAGTTGACT
CTTAGCTTCCAGCGAGCTACGTGCATCAGCTTTTTTTGACAAACGATTCCTCCCGTGTGAAGTAT
CTTCTCGATTCCTCCACAACTCAAAGTAGTCCGTCAACTGAACTT
Found at i:630946 original size:11 final size:11
Alignment explanation
Indices: 630925--630961 Score: 58
Period size: 11 Copynumber: 3.5 Consensus size: 11
630915 ACTAACTAAC
630925 TAATA-AATAA
1 TAATATAATAA
630935 TAATATAATAA
1 TAATATAATAA
*
630946 TAAAATAATAA
1 TAATATAATAA
630957 TAATA
1 TAATA
630962 GAAAAGATAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
10 5 0.21
11 19 0.79
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (11 bp):
TAATATAATAA
Left flanking sequence: Indices 630425 -- 630924
AAGATCTTACCATTTCCGAAGCAACCGGAGCTACATCTCTTTTCCATTTCCACTCAAGAGTTCTT
ATGTATTTCCACGCCCCTTTGAGACCTCGAAAAATGGACAAATTCCTTTTCTTAGGAACACATAC
AAGATTCGTCACTACAAAAAATAGAAGGGTAACCCCACCATTAACTACTTCATTTATTAATTTCA
TAGTAATCAAAATACATGTCATGTCCTACCGAGACATAATTTGTAACTTGCTATCCTCTTGCATA
GCAGGCAAAGATTTACCTCCGTGGAAAGGCTGATTCATTCGGATCGACATGAGGGTCCAACTACA
TTGCATTGCCAGAATCCATGTTGTATATTTGAAACAGCTCCTTGCTTCTCTCATGGTACAACCCT
CTTCCCGCGGAGCCCCCCTTTCTCCTCGGCCCACAGAGAAAAAATAGGGGACTGGTGCCAACAGT
TCATCACGGAAGAAAGGACTCACCGAGCCGGGATCACTAACTAAC
Right flanking sequence: Indices 630962 -- 631461
GAAAAGATAATAATAATAGAAAAGAACTGTAATAATAATAGAAAAGAACTGTCTTTTCTGTATAC
TTTACCCGGTTCTGTTGCTACCGCGGGCCTTACGCAATCGATCGGATCATATAGATATCCCTTCA
ACACAACATAGGTCATCGAAAGGATCTCGGACGACCCACCAAAGCACGAAAGCCAGGATCTTTCA
GAAAATGGATTCCTATTCGAAGAGTGCATAACCGCATGGATAAGCTCACGCTAACCCGTCAATTT
GGGATCCAATTCGGGATTTTCCTTGGGAGGTCTCGGGAAGGAATTGGAATGTAATAATATCGATT
CATACAGAAGAAAAGGTTCTCTATTGATTCAAACGCTGTACCTATGGGAAGGGATAGAGGAAGAG
AAAAAAACCGAAGATTTCACATAGTACTTTTGATCGACAAATAAATCAGATTTATTTCGTACCCT
TCGCTCGATGAGAAAATGGATCAGATTCTACAGGATCAAACCTAT
Found at i:630997 original size:22 final size:22
Alignment explanation
Indices: 630951--631013 Score: 98
Period size: 22 Copynumber: 3.0 Consensus size: 22
630941 AATAATAAAA
630951 TAATAATAATAGAAAAG-A---
1 TAATAATAATAGAAAAGAACTG
630969 TAATAATAATAGAAAAGAACTG
1 TAATAATAATAGAAAAGAACTG
630991 TAATAATAATAGAAAAGAACTG
1 TAATAATAATAGAAAAGAACTG
631013 T
1 T
631014 CTTTTCTGTA
Statistics
Matches: 41, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
18 17 0.41
19 1 0.02
22 23 0.56
ACGTcount: A:0.60, C:0.03, G:0.13, T:0.24
Consensus pattern (22 bp):
TAATAATAATAGAAAAGAACTG
Left flanking sequence: Indices 630451 -- 630950
GGAGCTACATCTCTTTTCCATTTCCACTCAAGAGTTCTTATGTATTTCCACGCCCCTTTGAGACC
TCGAAAAATGGACAAATTCCTTTTCTTAGGAACACATACAAGATTCGTCACTACAAAAAATAGAA
GGGTAACCCCACCATTAACTACTTCATTTATTAATTTCATAGTAATCAAAATACATGTCATGTCC
TACCGAGACATAATTTGTAACTTGCTATCCTCTTGCATAGCAGGCAAAGATTTACCTCCGTGGAA
AGGCTGATTCATTCGGATCGACATGAGGGTCCAACTACATTGCATTGCCAGAATCCATGTTGTAT
ATTTGAAACAGCTCCTTGCTTCTCTCATGGTACAACCCTCTTCCCGCGGAGCCCCCCTTTCTCCT
CGGCCCACAGAGAAAAAATAGGGGACTGGTGCCAACAGTTCATCACGGAAGAAAGGACTCACCGA
GCCGGGATCACTAACTAACTAATAAATAATAATATAATAATAAAA
Right flanking sequence: Indices 631014 -- 631513
CTTTTCTGTATACTTTACCCGGTTCTGTTGCTACCGCGGGCCTTACGCAATCGATCGGATCATAT
AGATATCCCTTCAACACAACATAGGTCATCGAAAGGATCTCGGACGACCCACCAAAGCACGAAAG
CCAGGATCTTTCAGAAAATGGATTCCTATTCGAAGAGTGCATAACCGCATGGATAAGCTCACGCT
AACCCGTCAATTTGGGATCCAATTCGGGATTTTCCTTGGGAGGTCTCGGGAAGGAATTGGAATGT
AATAATATCGATTCATACAGAAGAAAAGGTTCTCTATTGATTCAAACGCTGTACCTATGGGAAGG
GATAGAGGAAGAGAAAAAAACCGAAGATTTCACATAGTACTTTTGATCGACAAATAAATCAGATT
TATTTCGTACCCTTCGCTCGATGAGAAAATGGATCAGATTCTACAGGATCAAACCTATGGGACTT
AAGGAATGATGGAAGGGAGTAAAAAGAAAAGAGAGGGAAATAAAA
Found at i:630999 original size:3 final size:3
Alignment explanation
Indices: 630925--630979 Score: 55
Period size: 3 Copynumber: 18.7 Consensus size: 3
630915 ACTAACTAAC
630925 TAA TAAA TAA TAA T-A TAA TAA TAA -AA TAA TAA TAA TAGA -AA -AGA
1 TAA T-AA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA-A TAA TA-A
630969 TAA TAA TAA TA
1 TAA TAA TAA TA
630980 GAAAAGAACT
Statistics
Matches: 46, Mismatches: 0, Indels: 12
0.79 0.00 0.21
Matches are distributed among these distances:
2 6 0.13
3 35 0.76
4 5 0.11
ACGTcount: A:0.67, C:0.00, G:0.04, T:0.29
Consensus pattern (3 bp):
TAA
Left flanking sequence: Indices 630425 -- 630924
AAGATCTTACCATTTCCGAAGCAACCGGAGCTACATCTCTTTTCCATTTCCACTCAAGAGTTCTT
ATGTATTTCCACGCCCCTTTGAGACCTCGAAAAATGGACAAATTCCTTTTCTTAGGAACACATAC
AAGATTCGTCACTACAAAAAATAGAAGGGTAACCCCACCATTAACTACTTCATTTATTAATTTCA
TAGTAATCAAAATACATGTCATGTCCTACCGAGACATAATTTGTAACTTGCTATCCTCTTGCATA
GCAGGCAAAGATTTACCTCCGTGGAAAGGCTGATTCATTCGGATCGACATGAGGGTCCAACTACA
TTGCATTGCCAGAATCCATGTTGTATATTTGAAACAGCTCCTTGCTTCTCTCATGGTACAACCCT
CTTCCCGCGGAGCCCCCCTTTCTCCTCGGCCCACAGAGAAAAAATAGGGGACTGGTGCCAACAGT
TCATCACGGAAGAAAGGACTCACCGAGCCGGGATCACTAACTAAC
Right flanking sequence: Indices 630980 -- 631479
GAAAAGAACTGTAATAATAATAGAAAAGAACTGTCTTTTCTGTATACTTTACCCGGTTCTGTTGC
TACCGCGGGCCTTACGCAATCGATCGGATCATATAGATATCCCTTCAACACAACATAGGTCATCG
AAAGGATCTCGGACGACCCACCAAAGCACGAAAGCCAGGATCTTTCAGAAAATGGATTCCTATTC
GAAGAGTGCATAACCGCATGGATAAGCTCACGCTAACCCGTCAATTTGGGATCCAATTCGGGATT
TTCCTTGGGAGGTCTCGGGAAGGAATTGGAATGTAATAATATCGATTCATACAGAAGAAAAGGTT
CTCTATTGATTCAAACGCTGTACCTATGGGAAGGGATAGAGGAAGAGAAAAAAACCGAAGATTTC
ACATAGTACTTTTGATCGACAAATAAATCAGATTTATTTCGTACCCTTCGCTCGATGAGAAAATG
GATCAGATTCTACAGGATCAAACCTATGGGACTTAAGGAATGATG
Found at i:631547 original size:25 final size:21
Alignment explanation
Indices: 631505--631562 Score: 55
Period size: 25 Copynumber: 2.6 Consensus size: 21
631495 AAAAGAGAGG
*
631505 GAAATAAAATAGAGAAAATAGAAT
1 GAAATAAAA-AAAGAAAA-A-AAT
631529 AGAAATAAAAAAAGTAAAAAAAT
1 -GAAATAAAAAAAG-AAAAAAAT
631552 -AAATAAAAAAA
1 GAAATAAAAAAA
631563 AATAAGTAAA
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
21 11 0.35
23 3 0.10
24 4 0.13
25 13 0.42
ACGTcount: A:0.76, C:0.00, G:0.10, T:0.14
Consensus pattern (21 bp):
GAAATAAAAAAAGAAAAAAAT
Left flanking sequence: Indices 631005 -- 631504
AAGAACTGTCTTTTCTGTATACTTTACCCGGTTCTGTTGCTACCGCGGGCCTTACGCAATCGATC
GGATCATATAGATATCCCTTCAACACAACATAGGTCATCGAAAGGATCTCGGACGACCCACCAAA
GCACGAAAGCCAGGATCTTTCAGAAAATGGATTCCTATTCGAAGAGTGCATAACCGCATGGATAA
GCTCACGCTAACCCGTCAATTTGGGATCCAATTCGGGATTTTCCTTGGGAGGTCTCGGGAAGGAA
TTGGAATGTAATAATATCGATTCATACAGAAGAAAAGGTTCTCTATTGATTCAAACGCTGTACCT
ATGGGAAGGGATAGAGGAAGAGAAAAAAACCGAAGATTTCACATAGTACTTTTGATCGACAAATA
AATCAGATTTATTTCGTACCCTTCGCTCGATGAGAAAATGGATCAGATTCTACAGGATCAAACCT
ATGGGACTTAAGGAATGATGGAAGGGAGTAAAAAGAAAAGAGAGG
Right flanking sequence: Indices 631563 -- 632062
AATAAGTAAAAGTAAAGTAGAAGAAAAGATTCAAAAAAATGAAAACTCGAAAAGGATTTTTCTGA
TTCTCGAAGAATGAAGGGCAAGGGGATTGATTGAGGAAGATCTCTTGTTCTTATTAGAAGATTAT
AAGATTAAGATCGTGGTTGGATCCGCATATGTTTGGTAAAAAGAAGAATCTTCTCCTTTGAGAAT
AATCAAAAATGGAAAGTGTTCCGTTGGAACATGAAAACGTGACTGAATTGGTCCTAGTTACTCTT
CGGGACGGAGTGGAAGAAGGGAGGAGATTCTCGAACGAGGAAAAGGATCCAATGACTTTGAAAGA
GTTGAACGAGGAGCCGTATGAGGTGAAAATCTCATGTACGGTTCTGTAGAGTGACAGTAAGGGTG
ACTTATCTGTCAACTTTTCCACTATCACCCCCAAAAAACCAAACTCTGCCTTACGTAAAGTTGCC
AGAGTACGATTAACCTCTGGATTTGAAATCACTGCTTATATACCT
Found at i:631563 original size:14 final size:14
Alignment explanation
Indices: 631544--631573 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
631534 TAAAAAAAGT
631544 AAAAAAATAAATAA
1 AAAAAAATAAATAA
*
631558 AAAAAAATAAGTAA
1 AAAAAAATAAATAA
631572 AA
1 AA
631574 GTAAAGTAGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.83, C:0.00, G:0.03, T:0.13
Consensus pattern (14 bp):
AAAAAAATAAATAA
Left flanking sequence: Indices 631044 -- 631543
CTACCGCGGGCCTTACGCAATCGATCGGATCATATAGATATCCCTTCAACACAACATAGGTCATC
GAAAGGATCTCGGACGACCCACCAAAGCACGAAAGCCAGGATCTTTCAGAAAATGGATTCCTATT
CGAAGAGTGCATAACCGCATGGATAAGCTCACGCTAACCCGTCAATTTGGGATCCAATTCGGGAT
TTTCCTTGGGAGGTCTCGGGAAGGAATTGGAATGTAATAATATCGATTCATACAGAAGAAAAGGT
TCTCTATTGATTCAAACGCTGTACCTATGGGAAGGGATAGAGGAAGAGAAAAAAACCGAAGATTT
CACATAGTACTTTTGATCGACAAATAAATCAGATTTATTTCGTACCCTTCGCTCGATGAGAAAAT
GGATCAGATTCTACAGGATCAAACCTATGGGACTTAAGGAATGATGGAAGGGAGTAAAAAGAAAA
GAGAGGGAAATAAAATAGAGAAAATAGAATAGAAATAAAAAAAGT
Right flanking sequence: Indices 631574 -- 632073
GTAAAGTAGAAGAAAAGATTCAAAAAAATGAAAACTCGAAAAGGATTTTTCTGATTCTCGAAGAA
TGAAGGGCAAGGGGATTGATTGAGGAAGATCTCTTGTTCTTATTAGAAGATTATAAGATTAAGAT
CGTGGTTGGATCCGCATATGTTTGGTAAAAAGAAGAATCTTCTCCTTTGAGAATAATCAAAAATG
GAAAGTGTTCCGTTGGAACATGAAAACGTGACTGAATTGGTCCTAGTTACTCTTCGGGACGGAGT
GGAAGAAGGGAGGAGATTCTCGAACGAGGAAAAGGATCCAATGACTTTGAAAGAGTTGAACGAGG
AGCCGTATGAGGTGAAAATCTCATGTACGGTTCTGTAGAGTGACAGTAAGGGTGACTTATCTGTC
AACTTTTCCACTATCACCCCCAAAAAACCAAACTCTGCCTTACGTAAAGTTGCCAGAGTACGATT
AACCTCTGGATTTGAAATCACTGCTTATATACCTGGTATTGGCCA
Found at i:638942 original size:9 final size:9
Alignment explanation
Indices: 638929--639006 Score: 84
Period size: 9 Copynumber: 8.7 Consensus size: 9
638919 GTCATCATCG
638929 ATATCGTCA
1 ATATCGTCA
* *
638938 CTATCATCA
1 ATATCGTCA
638947 ATATCGTCA
1 ATATCGTCA
* *
638956 CTATCATCA
1 ATATCGTCA
638965 ATATCGTCA
1 ATATCGTCA
* *
638974 CTATCATCA
1 ATATCGTCA
638983 ATATCGTCA
1 ATATCGTCA
* *
638992 CTATCATCA
1 ATATCGTCA
639001 ATATCG
1 ATATCG
639007 ATATCATCAA
Statistics
Matches: 53, Mismatches: 16, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
9 53 1.00
ACGTcount: A:0.33, C:0.27, G:0.06, T:0.33
Consensus pattern (9 bp):
ATATCGTCA
Left flanking sequence: Indices 638429 -- 638928
GTGTAATACTAATTGATAGGGCCTCATTGGTAAGTGCTACAAGATCTCGTGCATTGGAACCCATG
GTTATGGACCCGAATCCATTAGTATGGAACATTTTATTTTCCAAGTGAAATCCCCTAGTATATGA
AAGAGTGAAAAAGTGCTTTCGTTGTTGTGGAATAAGAAGCCTTCGTATCTTAATGCATGTATTTG
ATTTATTCGGAGCTATTAGAGCAGGATCCACTTTTTGGGGAATATGAGTCGAAGCAATAACAAGA
ATATTTATAGGGGAGCATCTTTCACAATCCCTGGAGAGATGGTTCACTAATAGACCGAGGGATAA
GTAATTCGACTCATTCACATACAGATCATGAATGTTTGGAATCCATATTATGCAAGGAGACATTG
CTTTTGCTAATTCGAATGGAAGGGTGATATCAAATCGGTCTATTTTCGGCGTCATATACATAGTT
AGCGTATTCGTCATAGTTAGCAGCTCCGTATCAAGGTCATCATCG
Right flanking sequence: Indices 639007 -- 639506
ATATCATCAATAAGATAACCTTTAGGCTTGTCATCCAGGAACTTGTTCGGAAATACCGTAATGAA
AGGAACATAGGAGTTTGTCGCTAGGTATTTGACCAAATAGGATCGTCCAGTTCCTATAGAACCTA
TCACTAAAATACCCCTAGAGGGGGATAGGGCTAAACGGAGCGAAAAGGGTTTTCCATGAGATGGG
AAATGAAAACTATTAGCCCCACACGAGGTTTGTGAATAAGTGATTGTCTGATAATGAGCAAGGAA
TATCCGTCTTTCTGCTAAACAGGATCTATTGAACTCATAATTCATTAGATTCTTTTTATGAATGT
CAACTAAGTATCGTAAGTAAACTGATCCCGGTTGTTCAATCATTTGATAACCAGAATCATTCTTT
GATAAATGATCACTATGAGTCAGACTCAATAGAATTGGATCAATCCTTTTTTCTGTCGTTAAGGT
GGAGAACTGAACCAAGAATTCTCTTTCTTTATCATCAATCGAATC
Found at i:638943 original size:18 final size:18
Alignment explanation
Indices: 638922--639018 Score: 164
Period size: 18 Copynumber: 5.6 Consensus size: 18
638912 TATCAAGGTC
*
638922 ATCATCGATATCGTCACT
1 ATCATCAATATCGTCACT
638940 ATCATCAATATCGTCACT
1 ATCATCAATATCGTCACT
638958 ATCATCAATATCGTCACT
1 ATCATCAATATCGTCACT
638976 ATCATCAATATCGTCACT
1 ATCATCAATATCGTCACT
638994 ATCATCAATATCG--A-T
1 ATCATCAATATCGTCACT
639009 ATCATCAATA
1 ATCATCAATA
639019 AGATAACCTT
Statistics
Matches: 78, Mismatches: 1, Indels: 3
0.95 0.01 0.04
Matches are distributed among these distances:
15 11 0.14
16 1 0.01
18 66 0.85
ACGTcount: A:0.35, C:0.26, G:0.06, T:0.33
Consensus pattern (18 bp):
ATCATCAATATCGTCACT
Left flanking sequence: Indices 638422 -- 638921
TTCTTCTGTGTAATACTAATTGATAGGGCCTCATTGGTAAGTGCTACAAGATCTCGTGCATTGGA
ACCCATGGTTATGGACCCGAATCCATTAGTATGGAACATTTTATTTTCCAAGTGAAATCCCCTAG
TATATGAAAGAGTGAAAAAGTGCTTTCGTTGTTGTGGAATAAGAAGCCTTCGTATCTTAATGCAT
GTATTTGATTTATTCGGAGCTATTAGAGCAGGATCCACTTTTTGGGGAATATGAGTCGAAGCAAT
AACAAGAATATTTATAGGGGAGCATCTTTCACAATCCCTGGAGAGATGGTTCACTAATAGACCGA
GGGATAAGTAATTCGACTCATTCACATACAGATCATGAATGTTTGGAATCCATATTATGCAAGGA
GACATTGCTTTTGCTAATTCGAATGGAAGGGTGATATCAAATCGGTCTATTTTCGGCGTCATATA
CATAGTTAGCGTATTCGTCATAGTTAGCAGCTCCGTATCAAGGTC
Right flanking sequence: Indices 639019 -- 639518
AGATAACCTTTAGGCTTGTCATCCAGGAACTTGTTCGGAAATACCGTAATGAAAGGAACATAGGA
GTTTGTCGCTAGGTATTTGACCAAATAGGATCGTCCAGTTCCTATAGAACCTATCACTAAAATAC
CCCTAGAGGGGGATAGGGCTAAACGGAGCGAAAAGGGTTTTCCATGAGATGGGAAATGAAAACTA
TTAGCCCCACACGAGGTTTGTGAATAAGTGATTGTCTGATAATGAGCAAGGAATATCCGTCTTTC
TGCTAAACAGGATCTATTGAACTCATAATTCATTAGATTCTTTTTATGAATGTCAACTAAGTATC
GTAAGTAAACTGATCCCGGTTGTTCAATCATTTGATAACCAGAATCATTCTTTGATAAATGATCA
CTATGAGTCAGACTCAATAGAATTGGATCAATCCTTTTTTCTGTCGTTAAGGTGGAGAACTGAAC
CAAGAATTCTCTTTCTTTATCATCAATCGAATCACTGTTCGCGAC
Found at i:641419 original size:21 final size:21
Alignment explanation
Indices: 641395--641463 Score: 70
Period size: 21 Copynumber: 3.2 Consensus size: 21
641385 ACTCACAAAG
641395 AAAAAAGGAAGTGACTTAGAC
1 AAAAAAGGAAGTGACTTAGAC
* *
641416 -AAAAAGAGAAGCGACTTGGAC
1 AAAAAAG-GAAGTGACTTAGAC
641437 AAAAAGAAAGGAAGTGACTTAGA-
1 --AAA-AAAGGAAGTGACTTAGAC
641460 AAAA
1 AAAA
641464 TCTTGTTTGT
Statistics
Matches: 39, Mismatches: 4, Indels: 11
0.72 0.07 0.20
Matches are distributed among these distances:
20 7 0.18
21 15 0.38
24 13 0.33
25 4 0.10
ACGTcount: A:0.55, C:0.09, G:0.25, T:0.12
Consensus pattern (21 bp):
AAAAAAGGAAGTGACTTAGAC
Left flanking sequence: Indices 640895 -- 641394
GCCCATACGTAAGATCATAATTATTGATACGGGCCTTTTCCACATAAAAAGGGAATCTTTTGTTA
CAATAGAACCAGAAGTGATGTGGATTATTCAAGAATCGAAGTCGATTTGCTTTATAAAAAGAAGA
TATCAATGAACTTCTATGAAATGGTTTCGTGGGATTCAGCCAATTGTCTCGATCGTGGGATATCA
TTGAGAAATAGGAATCAGTGTTATCAAAGGATTTCCTGCGATTATTTCTAGTATGGAATGAGTCA
ATCATCCACTTTGGTATCTTATTGAACAAAAATGGTGATATTCTTCCTCCATTGATCAAGAATTT
CGATTTTTGGGAAGTATCATGATCATCTAATAAGAAGGATTTCAATTTATTCAAATGAACGATTT
GAACACCTATTGATTCTAACAACTGATTGCAGAGTTGATCATTCGGACCTTTCAATTCATAGATG
CGGATCTCGGACCTATGAATGGGGATATTCCCGAGACTCACAAAG
Right flanking sequence: Indices 641464 -- 641963
TCTTGTTTGTCGATAACCTCGGACCAATCAATCGAATATTGATTAATACGTAATCGATCGAACAC
TACTTGAAAACGGCTCTTCTGCTCAGCAACGAAATGTTCCAAATCTTCCTGGAAATTCTTGCTCC
CATTGGACCATTTGTATCTATATGCATCAGGATCCCGATTCATGGATCTCTCGGTTCGAGAAATA
AGAGGATCGAACCATTTCTTCTGACTCTTTTTCAAATTCGAGAAATGTTGGTTGATCGTATATTT
CATTATAGTTCTATGATTCAGAGTATCATTTCCTATTTGATCCCTTTGAATTCCATATTCGAAGT
TGCGATCGGATCTATTCATTAAAAAGAATTGATTCGATACATTTCTTATGTACCCATGGGTGCTA
TATTGGATTTGAATCAGATTTTGGATCAATCTATATTGATTGACTGCCTTCATTATGTTGTTGCT
AGCAAATACCACTATTTTTGGTTTTGGATCTTCCAAAGCATTCCC
Found at i:641421 original size:20 final size:21
Alignment explanation
Indices: 641396--641443 Score: 71
Period size: 21 Copynumber: 2.3 Consensus size: 21
641386 CTCACAAAGA
*
641396 AAAAAG-GAAGTGACTTAGAC
1 AAAAAGAGAAGCGACTTAGAC
*
641416 AAAAAGAGAAGCGACTTGGAC
1 AAAAAGAGAAGCGACTTAGAC
641437 AAAAAGA
1 AAAAAGA
641444 AAGGAAGTGA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
20 6 0.24
21 19 0.76
ACGTcount: A:0.54, C:0.10, G:0.25, T:0.10
Consensus pattern (21 bp):
AAAAAGAGAAGCGACTTAGAC
Left flanking sequence: Indices 640896 -- 641395
CCCATACGTAAGATCATAATTATTGATACGGGCCTTTTCCACATAAAAAGGGAATCTTTTGTTAC
AATAGAACCAGAAGTGATGTGGATTATTCAAGAATCGAAGTCGATTTGCTTTATAAAAAGAAGAT
ATCAATGAACTTCTATGAAATGGTTTCGTGGGATTCAGCCAATTGTCTCGATCGTGGGATATCAT
TGAGAAATAGGAATCAGTGTTATCAAAGGATTTCCTGCGATTATTTCTAGTATGGAATGAGTCAA
TCATCCACTTTGGTATCTTATTGAACAAAAATGGTGATATTCTTCCTCCATTGATCAAGAATTTC
GATTTTTGGGAAGTATCATGATCATCTAATAAGAAGGATTTCAATTTATTCAAATGAACGATTTG
AACACCTATTGATTCTAACAACTGATTGCAGAGTTGATCATTCGGACCTTTCAATTCATAGATGC
GGATCTCGGACCTATGAATGGGGATATTCCCGAGACTCACAAAGA
Right flanking sequence: Indices 641444 -- 641943
AAGGAAGTGACTTAGAAAAATCTTGTTTGTCGATAACCTCGGACCAATCAATCGAATATTGATTA
ATACGTAATCGATCGAACACTACTTGAAAACGGCTCTTCTGCTCAGCAACGAAATGTTCCAAATC
TTCCTGGAAATTCTTGCTCCCATTGGACCATTTGTATCTATATGCATCAGGATCCCGATTCATGG
ATCTCTCGGTTCGAGAAATAAGAGGATCGAACCATTTCTTCTGACTCTTTTTCAAATTCGAGAAA
TGTTGGTTGATCGTATATTTCATTATAGTTCTATGATTCAGAGTATCATTTCCTATTTGATCCCT
TTGAATTCCATATTCGAAGTTGCGATCGGATCTATTCATTAAAAAGAATTGATTCGATACATTTC
TTATGTACCCATGGGTGCTATATTGGATTTGAATCAGATTTTGGATCAATCTATATTGATTGACT
GCCTTCATTATGTTGTTGCTAGCAAATACCACTATTTTTGGTTTT
Found at i:647793 original size:10 final size:10
Alignment explanation
Indices: 647769--647797 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
647759 TTTTAGAATT
647769 CTTAATTCT-
1 CTTAATTCTA
647778 CTTAATTCTA
1 CTTAATTCTA
647788 CTTAATTCTA
1 CTTAATTCTA
647798 TAGGGTTGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 9 0.47
10 10 0.53
ACGTcount: A:0.28, C:0.21, G:0.00, T:0.52
Consensus pattern (10 bp):
CTTAATTCTA
Left flanking sequence: Indices 647269 -- 647768
CGCGAGGAATTGAAGAATTACAGAGCAATGCACAAAAAGAATTTAATTCTGTGAACCAAAAACTT
AACATTGCTATCACAAGAGTTGAAAAACCGTATGGACAACCTAATATTCTTGCAGAATTTATAGC
CGAACAATTAAAGAATAGAGTTTCGTTTCGAAAGGCAATGAAAAAAGCTATTGAATTAACTGAAA
AAGCAGATACAAAGGGAATTCAAGTACAAATTGCAGGGCGTATCGACGGAAAGGAAATAGCACGT
GTCGAATGGATCAGAGAAGGTAGGGTTCCCCTACAAACCATTCGAGCCAAAATTGATTATTGTTC
CTATACAGTTCGAACTATCTATGGGGCATTAGGAATCAAAATTTGGATATTTGCAGACGAGGAAT
AATGGGCCTTTCGTTGTCTTTCTGTTCCATCCATCCGGCAATTGAATAAAAAATCACAAACTCGT
TCATTTTTTTCCGTTCAATCAAAAAAATGAGAATTTTTTAGAATT
Right flanking sequence: Indices 647798 -- 648297
TAGGGTTGAATAACAATTCGATTGACTCCATCTCCATATAATTGCTATGCTTAGTGTGTGACTCG
TTGGTTTTTTATTTAGAGTTAGGTTAGGATTAAAAAACAAAGGGCCATCCCCTAGTATGAACTAA
TAACTATATAACTAATAACCAGCTCATTGCTTCGTATTATCTGGATCCAAGGAACCAGTCGCTAT
ATGATGTATTGATCATATTGTTGTAGCAACTGAAGCATTTTTTTTTTACATAAAAGAAAAATAAA
TCTATCTATAAGGTTGTGAAGCAAAAACAAAGGGATATGGATAAATGGAGGGGTGAGAGAAAGAA
AGAAAAAGAATAGCAATGATATATGATTCCAATATGTATGGTCTATGAACTATCTTATAAAAGGC
AATGTAATAAAGCATTAATGTATTCGTCCATAATTAATAATTAGATTCGATGAATATGAATACAA
TTTATACGAAAAATAAAAAAGAATAAAGAGCGCCGAGTCAATAAA
Found at i:655170 original size:13 final size:13
Alignment explanation
Indices: 655153--655185 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
655143 AGATTAATTG
655153 AATAAAATAAA-A
1 AATAAAATAAATA
655165 ATATAAAATAAATA
1 A-ATAAAATAAATA
655179 AATAAAA
1 AATAAAA
655186 ATTAGGAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
12 1 0.05
13 16 0.84
14 2 0.11
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (13 bp):
AATAAAATAAATA
Left flanking sequence: Indices 654653 -- 655152
ATCATATACTTTATTGAGATAGGTAAACCGGGAGAACTCCCCCTCGGAGAACTGTATATGAGAAT
TTCATCTCGTACAGCTCAAGCAGAAACACCAAAATACTGGTTGCAACGAATATGTAATAGAAATT
TTTGAATTTTTTCTTATCTTATTCCCCGGATTAAATATTCTCTGAAGATACGAAGGAAAAAATCC
TAAAGCTTTTCTTTGTGTTGTGATGATAATGCCAAAATATCAAGTCAGCTCATTCGTCTTTATGT
TGATAGCTACAGGCTTCTTGAATCTTCTTTATCCTTATTTTATTTATTTTATTTGTATCGAATTA
CGAATTATGAAAATTTTTTTTTTTTTATAGGAATTCTCTTGTTGAGACCCTCTGAATCAATTGAA
ACCTCAGATTCATACTAGAACCACGATGTTGAATAAAGTTCCCAAGCCAAAAGGTTTTCTGAGTA
AGAACCATTTGATCATCACCACTTATTCAATTAATAGATTAATTG
Right flanking sequence: Indices 655186 -- 655685
ATTAGGAATTTTATTTGTCCATTGGTCAAAATAAACAAATAAACAGAAACATAATTTTTAAGGAA
GAAAACCCTTTCGATTTATACTGATAAATCTTTGAAATTTCTTTTTTTTTTTTTATCCAGTCGCG
AGGTCTAAATAGTAGTTATGAATCATAGTTCAAATATTTCTCGATCTATTCCATATATTACGTGC
TCCAGATAAAAAAATTAATATCCGACGAAGCAGAACTTATCTCTCTCAAGATGACAGACCCATTC
TCTGTACTAATCAATAGGATCAATTATAACAAGTCACACACTCATATTCCGGAAATACAGAAACA
AAGGAATTTCACGATCGAACTGCCAAAATGGCCTAGAAATCTGAGTCCTAAGTAATTCATTTTGG
ATTGAAAAGCCAGGACTTTCTTATTTTTATGGACCTAATTCATTGAAATTCCATCCAGTAAAACG
GAAGAATTATAAATCTCCAAAATAATAGATAGGAATACCGCAAAT
Found at i:659928 original size:23 final size:23
Alignment explanation
Indices: 659885--659928 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
659875 CAAGATAATT
*
659885 TACTTAATTTTCTTTTCTTTTTA
1 TACTTAATTTTCTTATCTTTTTA
*
659908 TACTTATTCTTTCTTAT-TTTT
1 TACTTAAT-TTTCTTATCTTTT
659929 CTTATTTGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
23 11 0.61
24 7 0.39
ACGTcount: A:0.16, C:0.14, G:0.00, T:0.70
Consensus pattern (23 bp):
TACTTAATTTTCTTATCTTTTTA
Left flanking sequence: Indices 659385 -- 659884
TCCCCCGGCGGGTGGGTAATACCTGGAGTCGCAATTTATGATACTATGCAATTTGTGCCACCAGA
TGTGCATACAATATGCATGGGATTAGCCGCTTCAATGGGATCTTTCATCCTGGTCGGAGGAGAAA
TTACGAAACGTATAGCATTCCCTCACGCTTGGCGCCAATGAGTTTTTTATTTGAGAGAAAAAAGA
AGACTATGCCTTCGCGATATTTAATATAAAATATAAATAAGAATTTATTTTAAGATAATATTTAA
GTAATAATAGCATGGCACTTCGAGTTTGATATGAACAAACCATTATTGTTTTTTCATAACATGGG
ATTGTATATCGGACGAGTAATATGAGACAAGACAAAGGGTATTTATTATTGGATCTTATCTATCT
GGGCTTCATTTCAGCGTCACAAACCTTTTTTTCACGACAAAAAAGTATCTTTCCAATATTTATGG
TATGAAATAATACTCAAATGATCAAATGAAAAAAACAAGATAATT
Right flanking sequence: Indices 659929 -- 660428
CTTATTTGATCGGATCAAAAAGAAACTTTGGGATTGCTGAATCATATATGAGATAAATCATAAAT
ATAGAAAGCAACGGAACCATCATAGTATTTTTGAACCCCCCGAAAAGAAGGGTGGTAAATGGATC
ACTTAACGATTCGATTTTGGTCTGCTGGATCCTATTTCATTTTTTTACGAACGTAAAAAGTCCAT
TGTGGAGCCGTATGCAATGCACAAAAAATGCCTGTACGGTTTTTCAATTATATATATTTTATTCT
TGTTATTCTTTATCTTTTTCCCTAGTCCAATCAATCGTACGAGATCGCGGAAACATTCATTATGT
TATATCATCAGGGTAATGATCCATCAACCTGCGAGTTCTTTTTATGAGGCACAAACAGGAGAATT
TGTCCTAGAAGCGGAAGAACTTCTGAAACTCCGCGAAACCCTCACAAGGGTTTATGTACAAAGAA
CGGGTAACCCCTTATGGGTTGTATCCGAAGACATGGAAAGGGACG
Found at i:662590 original size:17 final size:17
Alignment explanation
Indices: 662564--662611 Score: 60
Period size: 17 Copynumber: 2.8 Consensus size: 17
662554 TTGAATTTTA
* *
662564 TTTATATATTTTTATAT
1 TTTATGTATTTATATAT
662581 TTTATGTATTTATATAT
1 TTTATGTATTTATATAT
*
662598 TATTATGTAATTAT
1 T-TTATGTATTTAT
662612 GTAATTTATT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
17 16 0.59
18 11 0.41
ACGTcount: A:0.31, C:0.00, G:0.04, T:0.65
Consensus pattern (17 bp):
TTTATGTATTTATATAT
Left flanking sequence: Indices 662064 -- 662563
CAATCGGGGATTTTCAAATTTTTCGAACAAAAAAAATCTGAGTTGGGGTTCATATTGAAATTTTG
ATTCAAGTGCAATTGAGGAATAGCCTATCTATCTATTTACTATTTATTTCTAATTCGAGGACCCG
TGGTTCTAGGAGTCGATTCAGTTCTCTCAAATTGTTTCTCGTTATTAAGAAAGGGTAACAAAGAT
AAAATACGAGCTTGCTTTATAGCAATAGTAATTAATCGTTGTTGTTTCAAAGTCAATCTATTCAC
TCGTCTAGATAATATTTTTCCTTGTTCACTAATAAATCGACTAATTAAACTCATGTTTCTATAAT
CAATTCGATCCCCCGATCCAATTGGGGGCAAACGCCTACGAAAAGATCGCTTGGATTTAAGAAAA
AGTCGCTTGGATTTATCCATGGTTTATTCCTTATTAAATCTTATTTCTTAATTCGAATTTCATTT
GTGATCCTACCGAAATAGGCTTGGTTTTTTTTTTATTGAATTTTA
Right flanking sequence: Indices 662612 -- 663111
GTAATTTATTGCTGTTCCTTGGAGGGGTTACAAGCGCGTTACATTTTCTTTATTTCTTTATCTCC
CCATGAATCGTATGCTTGTAACAATAAGAACAAAATTTTCTCAATTCCAATCGACTAGGCGTATT
GTGTCGATTCTTTTGAGTAATATATCTGGAAATGCCCCGCGATTCCTTATTAATATCGTTTCGGA
CACAACTGTTACATTCCAAAATAACCTTTACTCTGACATTTTTACTCTTGGCCATAACCCCCCCC
CTTTTTTTTATTCACTCAACTCTTATATTTTTGAAACGAAAAAGAAAATAAAGAAGTTGCTGACT
CGAAACCCAATTCTTAAATACTAATACTTCAACTTCATTTCAATCAAATCAATAGAGAATATAAG
TAATACGATGATTTCTAACTATACTTTCTAACTATCAATTATTTTATATTATAGTATTTTATTTT
AGTATCTTGTATGCGTTTGTTGTCCGCGACCTTTATTTTTATTAT
Found at i:663154 original size:22 final size:22
Alignment explanation
Indices: 663127--663170 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
663117 TTACTTTACA
663127 TTTTTGTTCTCCCTCTATTAAT
1 TTTTTGTTCTCCCTCTATTAAT
663149 TTTTTGTTCTCCCTCTATTAAT
1 TTTTTGTTCTCCCTCTATTAAT
663171 ATTAATTCAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.14, C:0.23, G:0.05, T:0.59
Consensus pattern (22 bp):
TTTTTGTTCTCCCTCTATTAAT
Left flanking sequence: Indices 662627 -- 663126
TCCTTGGAGGGGTTACAAGCGCGTTACATTTTCTTTATTTCTTTATCTCCCCATGAATCGTATGC
TTGTAACAATAAGAACAAAATTTTCTCAATTCCAATCGACTAGGCGTATTGTGTCGATTCTTTTG
AGTAATATATCTGGAAATGCCCCGCGATTCCTTATTAATATCGTTTCGGACACAACTGTTACATT
CCAAAATAACCTTTACTCTGACATTTTTACTCTTGGCCATAACCCCCCCCCTTTTTTTTATTCAC
TCAACTCTTATATTTTTGAAACGAAAAAGAAAATAAAGAAGTTGCTGACTCGAAACCCAATTCTT
AAATACTAATACTTCAACTTCATTTCAATCAAATCAATAGAGAATATAAGTAATACGATGATTTC
TAACTATACTTTCTAACTATCAATTATTTTATATTATAGTATTTTATTTTAGTATCTTGTATGCG
TTTGTTGTCCGCGACCTTTATTTTTATTATTTAATTTACTTTACA
Right flanking sequence: Indices 663171 -- 663670
ATTAATTCATCGTGAACCCGAGTTTCGTTGCGGATGAATCTTCTTTGTTTGATTATTTCTCTTTC
CTTCTTTTTTATCCTAAAAAACTGACAGAAAGCACAAAACAAAAAGGGTTAGTCACAGATAATTT
ATTCTATCTATAATCTTTCTTCATCCCCAACTAGAATGAAAAAAAGGGGAATGTTAACGCATCTG
GGAATAAACGATTAATCTCTATCAATAGGCCTGCTAAAGACCCGAACCATAGAGTGCTTAACACA
GGTGCCACGGAGAGATACGTTTTTATATCTCGCATTGAAAATCCTCCTTTTTTTTTGTAATACAT
ATATGATCAGATACACATGTCGTTAAGGATCACTTGTATTTGTACGCGGAATCCCTAACTCAAAT
GAATATATATAATATAACAAACAATCCCCTGGTTGACTCTATTTTACTTTCTTTACAACAGAAAA
AAGTGTCCACTTACTTTCTTTTCTGAACATTACATTTTACCGATT
Found at i:663686 original size:13 final size:13
Alignment explanation
Indices: 663668--663695 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
663658 CATTTTACCG
663668 ATTTATATTATAT
1 ATTTATATTATAT
663681 ATTTATATTATAT
1 ATTTATATTATAT
663694 AT
1 AT
663696 ATTTGTATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (13 bp):
ATTTATATTATAT
Left flanking sequence: Indices 663168 -- 663667
AATATTAATTCATCGTGAACCCGAGTTTCGTTGCGGATGAATCTTCTTTGTTTGATTATTTCTCT
TTCCTTCTTTTTTATCCTAAAAAACTGACAGAAAGCACAAAACAAAAAGGGTTAGTCACAGATAA
TTTATTCTATCTATAATCTTTCTTCATCCCCAACTAGAATGAAAAAAAGGGGAATGTTAACGCAT
CTGGGAATAAACGATTAATCTCTATCAATAGGCCTGCTAAAGACCCGAACCATAGAGTGCTTAAC
ACAGGTGCCACGGAGAGATACGTTTTTATATCTCGCATTGAAAATCCTCCTTTTTTTTTGTAATA
CATATATGATCAGATACACATGTCGTTAAGGATCACTTGTATTTGTACGCGGAATCCCTAACTCA
AATGAATATATATAATATAACAAACAATCCCCTGGTTGACTCTATTTTACTTTCTTTACAACAGA
AAAAAGTGTCCACTTACTTTCTTTTCTGAACATTACATTTTACCG
Right flanking sequence: Indices 663696 -- 664195
ATTTGTATTTGATTCTTTTATTATATGTTATATTGTTATATGAGAATATGAGAGGAAAAAGAAAT
GAGAAGAGAAATTGTATTGTATATCAATGGGGGAAATCAAGATGTGGAAAACAAGATGGGGATTC
TCTACAATGACACTATCTATGGTCCAATTGAAAGGGATGTAGCGCAGCTTGGTAGCGCGTTTGTT
TTGGGTACAAAATGTCACGGGTTCAAATCCTGTCATCCCTATCTATTACTTCTCCCATCCATGTG
CAGTAATGAAGGATCTGTTGAGATCAATAAAAATTAGACATACATAATGCTTTATGATACTATAT
GTATCCAAAGTGGGGGTTACAAATAAAATTCTTTTATTTACATATAGCCCTTTATATATATTGGG
ATAAGAAAGAAAGCGCTCTTAGTTCAGTTCGGTAGAACGCGGGTCTCCAAAACCCGATGTCGTAG
GTTCAAATCCTACAGAGCGTGCTTCTGTTCTTCTTGGGTCGAATT
Found at i:663696 original size:15 final size:14
Alignment explanation
Indices: 663668--663705 Score: 51
Period size: 15 Copynumber: 2.7 Consensus size: 14
663658 CATTTTACCG
663668 ATTTATA-TTATAT
1 ATTTATATTTATAT
663681 ATTTATATTATATAT
1 ATTTATATT-TATAT
*
663696 ATTTGTATTT
1 ATTTATATTT
663706 GATTCTTTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
13 7 0.32
14 2 0.09
15 13 0.59
ACGTcount: A:0.34, C:0.00, G:0.03, T:0.63
Consensus pattern (14 bp):
ATTTATATTTATAT
Left flanking sequence: Indices 663168 -- 663667
AATATTAATTCATCGTGAACCCGAGTTTCGTTGCGGATGAATCTTCTTTGTTTGATTATTTCTCT
TTCCTTCTTTTTTATCCTAAAAAACTGACAGAAAGCACAAAACAAAAAGGGTTAGTCACAGATAA
TTTATTCTATCTATAATCTTTCTTCATCCCCAACTAGAATGAAAAAAAGGGGAATGTTAACGCAT
CTGGGAATAAACGATTAATCTCTATCAATAGGCCTGCTAAAGACCCGAACCATAGAGTGCTTAAC
ACAGGTGCCACGGAGAGATACGTTTTTATATCTCGCATTGAAAATCCTCCTTTTTTTTTGTAATA
CATATATGATCAGATACACATGTCGTTAAGGATCACTTGTATTTGTACGCGGAATCCCTAACTCA
AATGAATATATATAATATAACAAACAATCCCCTGGTTGACTCTATTTTACTTTCTTTACAACAGA
AAAAAGTGTCCACTTACTTTCTTTTCTGAACATTACATTTTACCG
Right flanking sequence: Indices 663706 -- 664205
GATTCTTTTATTATATGTTATATTGTTATATGAGAATATGAGAGGAAAAAGAAATGAGAAGAGAA
ATTGTATTGTATATCAATGGGGGAAATCAAGATGTGGAAAACAAGATGGGGATTCTCTACAATGA
CACTATCTATGGTCCAATTGAAAGGGATGTAGCGCAGCTTGGTAGCGCGTTTGTTTTGGGTACAA
AATGTCACGGGTTCAAATCCTGTCATCCCTATCTATTACTTCTCCCATCCATGTGCAGTAATGAA
GGATCTGTTGAGATCAATAAAAATTAGACATACATAATGCTTTATGATACTATATGTATCCAAAG
TGGGGGTTACAAATAAAATTCTTTTATTTACATATAGCCCTTTATATATATTGGGATAAGAAAGA
AAGCGCTCTTAGTTCAGTTCGGTAGAACGCGGGTCTCCAAAACCCGATGTCGTAGGTTCAAATCC
TACAGAGCGTGCTTCTGTTCTTCTTGGGTCGAATTACAAGTAAAT
Found at i:667088 original size:28 final size:27
Alignment explanation
Indices: 667016--667088 Score: 62
Period size: 28 Copynumber: 2.7 Consensus size: 27
667006 AGAAAAACAG
*
667016 TATTATAATATAAT-ATTAATATTTATT
1 TATTA-AATATTATAATTAATATTTATT
**
667043 TAATTTTA-ATTA-ATATTAATATTTTATT
1 T-ATTAAATATTATA-ATTAATA-TTTATT
667071 TATTAAATATTATAATTA
1 TATTAAATATTATAATTA
667089 TAATAATATT
Statistics
Matches: 35, Mismatches: 5, Indels: 11
0.69 0.10 0.22
Matches are distributed among these distances:
26 3 0.09
27 13 0.37
28 18 0.51
29 1 0.03
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (27 bp):
TATTAAATATTATAATTAATATTTATT
Left flanking sequence: Indices 666516 -- 667015
ATAAATTATTTTATCCCATTCGGAAGGATTTAATCTCAAAATTATCCATGACTGTTTATGTCTCT
AGCACGACCACTCGATGAAATGTGGAGGGAAGTGGGGTAAATGGCCGATACTACTGGAAGGATTC
CTCTTTGGCTTATAGGCACTGTAGCTGGTATTCTTGTGATCGGTTTAATAGGTGTTTTCTTTTAT
GGTTCATATTCTGGATTGGGTTCATCCCTGTAGTAATCGTATAAACTGGGTTGGAGACATTAATT
AAAGAGTAAGAACTCAAAGGACCTTGCCCTTTGAGTTCTTACTTTTCCAACGATACTTTTATTCA
TTCGATAAGATAAACGTTCCAAATTTTTCTAGTCAACATAGTCACACCACAGAAATTCGCATAAA
ATGGGGGCCGGGGTCAAATCAAAAAAAAAAGTATTCTTCGCAACTTACACGCGAGTATGCTAGTA
TATTATTAGCAATGAAATAATTCAAAATGGTTTGAAGAAAAACAG
Right flanking sequence: Indices 667089 -- 667588
TAATAATATTTTATTAAATTTAAATATTATAATTATAATAATATTTAAAGTAAGCAAAAGGTTTA
TTATTTATCATTTTTTTTTGAACCCTAATTGCATCGATCAACAAGAAGTAAGAAGTTGATTATTT
TTATCAACTTAATTTAATGTTTCGAAATACATAGCTCTAGAAATTCATTTCGAACAATTGAACCT
TCTCAAACTGTTTCTTTTTAAGAACCAAAAAGATTTGTGCCAGAATAACAGATGCCAAGAATAAA
AAAAGACCTTGGACACGCGATGGGTCTTGAAGTACTATTTCTGCATCTCCCTGACCAAATCCACC
CACATTTGGATTACTCGTTAATGGTTGATCAAGCTTGATGGATTCACCCTCTGAAACAAGAAGTT
CTGGTCCCGGAGGGATAATATCAACGACCATGTGTCCATCCGAGGCATCCGCTATGTTTATTTCA
TACCCCCCTTTTTCTTTACGTACTATTTTGCTTACTATACCCGAC
Found at i:667119 original size:35 final size:33
Alignment explanation
Indices: 667049--667134 Score: 127
Period size: 35 Copynumber: 2.5 Consensus size: 33
667039 TATTTAATTT
* *
667049 TAATTAATATTAATATTTTATTTATTAAATATTA
1 TAATT-ATAATAATATTTTATTAATTAAATATTA
667083 TAATTATAATAATATTTTATTAAATTTAAATATTA
1 TAATTATAATAATATTTTATT-AA-TTAAATATTA
667118 TAATTATAATAATATTT
1 TAATTATAATAATATTT
667135 AAAGTAAGCA
Statistics
Matches: 48, Mismatches: 2, Indels: 3
0.91 0.04 0.06
Matches are distributed among these distances:
33 15 0.31
34 6 0.12
35 27 0.56
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (33 bp):
TAATTATAATAATATTTTATTAATTAAATATTA
Left flanking sequence: Indices 666549 -- 667048
TCTCAAAATTATCCATGACTGTTTATGTCTCTAGCACGACCACTCGATGAAATGTGGAGGGAAGT
GGGGTAAATGGCCGATACTACTGGAAGGATTCCTCTTTGGCTTATAGGCACTGTAGCTGGTATTC
TTGTGATCGGTTTAATAGGTGTTTTCTTTTATGGTTCATATTCTGGATTGGGTTCATCCCTGTAG
TAATCGTATAAACTGGGTTGGAGACATTAATTAAAGAGTAAGAACTCAAAGGACCTTGCCCTTTG
AGTTCTTACTTTTCCAACGATACTTTTATTCATTCGATAAGATAAACGTTCCAAATTTTTCTAGT
CAACATAGTCACACCACAGAAATTCGCATAAAATGGGGGCCGGGGTCAAATCAAAAAAAAAAGTA
TTCTTCGCAACTTACACGCGAGTATGCTAGTATATTATTAGCAATGAAATAATTCAAAATGGTTT
GAAGAAAAACAGTATTATAATATAATATTAATATTTATTTAATTT
Right flanking sequence: Indices 667135 -- 667634
AAAGTAAGCAAAAGGTTTATTATTTATCATTTTTTTTTGAACCCTAATTGCATCGATCAACAAGA
AGTAAGAAGTTGATTATTTTTATCAACTTAATTTAATGTTTCGAAATACATAGCTCTAGAAATTC
ATTTCGAACAATTGAACCTTCTCAAACTGTTTCTTTTTAAGAACCAAAAAGATTTGTGCCAGAAT
AACAGATGCCAAGAATAAAAAAAGACCTTGGACACGCGATGGGTCTTGAAGTACTATTTCTGCAT
CTCCCTGACCAAATCCACCCACATTTGGATTACTCGTTAATGGTTGATCAAGCTTGATGGATTCA
CCCTCTGAAACAAGAAGTTCTGGTCCCGGAGGGATAATATCAACGACCATGTGTCCATCCGAGGC
ATCCGCTATGTTTATTTCATACCCCCCTTTTTCTTTACGTACTATTTTGCTTACTATACCCGACG
CTGTAGCATTATAGACTGTATTGTTACTCTTGCTTCCATCCGGAT
Found at i:671222 original size:15 final size:15
Alignment explanation
Indices: 671204--671235 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
671194 ATACAATATT
671204 TATATCTATAATAAA
1 TATATCTATAATAAA
671219 TATATCTATAATAAA
1 TATATCTATAATAAA
671234 TA
1 TA
671236 CGTAATGTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.53, C:0.06, G:0.00, T:0.41
Consensus pattern (15 bp):
TATATCTATAATAAA
Left flanking sequence: Indices 670704 -- 671203
ATTTAAATAGATATCCGTATTATTATATTATGTTATGACCCAAGTCCGAGTCTTGAAAAAAAAAA
ATGAATGAGATTGGATCCCGTCGAATCTAGATAATCTTGTTTTTTTGAACATGAAGAGATAGGGA
AGCCATTGCAATTGCCGGAAATACTAGACCCACTAAAGGCACAAAAAAAGAGGGTAAATTGAAAG
TTGTCATAGAATGGATACCTCGATTTAATATTTTGTACCTGTCATAAAGATATCTTATGATAAGT
ATATCTATTATCAGTATATAATAATAGGTACAAAAAACGTAGAACTAAATAAGTGTACCTATTCA
CTTTTATATATATTTATTATTCTTGTTTTCTTATACTTATCTTCTAATAAATACCAAAAAAGGTT
CTTACAAGTTATCGCAGGTTATAAAGAATTTGACCCAACAGTGATTCTTAATAAAAACAAAACGG
AAAGTTTTTTTTTGAGATTTTTTGAGAATAATTCAATACAATATT
Right flanking sequence: Indices 671236 -- 671735
CGTAATGTAATAAAATTACATGAATTTTTCTGAATTTAGGATAAAAATGAACTCTTTTATCCTAT
TGATAGAGCCTTCCCGATTACTAATCATCCATTATGATTACTAATCATGCATTCATTATATAGGT
AGAAATAAAATTGATTTGTAGTAAATAAGAAAAGAGTAATTATCAACAACTTATGATCCGTTATA
CAATTGTATCTTATCTTATAACCTCGAGTAAAACTCCATGCTTATTATTTTTTATTTTCACTTTG
ATTACGATTACTATAAAACTAAATAAAATTGAAACTAAATACTTGTATACTTGTAAACTTCAAAT
AAAAAAACTGAATTATGAATTAAATGATCTACTTGATTAAATTTTGATTCAAAGGACAGAAACCG
TGAAGCTGAAATAACTCACTCAGAACACCCTTTAAAAGATTACGCGGTACGATTGGGTCGAATAA
GCCCTTATGGAATAAATACTCAGCTTCTTGTGACCCATCAGGTAC
Found at i:671341 original size:20 final size:20
Alignment explanation
Indices: 671316--671353 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
671306 GAGCCTTCCC
671316 GATTACTAATCATCCATTAT
1 GATTACTAATCATCCATTAT
*
671336 GATTACTAATCATGCATT
1 GATTACTAATCATCCATT
671354 CATTATATAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.34, C:0.18, G:0.08, T:0.39
Consensus pattern (20 bp):
GATTACTAATCATCCATTAT
Left flanking sequence: Indices 670816 -- 671315
AACATGAAGAGATAGGGAAGCCATTGCAATTGCCGGAAATACTAGACCCACTAAAGGCACAAAAA
AAGAGGGTAAATTGAAAGTTGTCATAGAATGGATACCTCGATTTAATATTTTGTACCTGTCATAA
AGATATCTTATGATAAGTATATCTATTATCAGTATATAATAATAGGTACAAAAAACGTAGAACTA
AATAAGTGTACCTATTCACTTTTATATATATTTATTATTCTTGTTTTCTTATACTTATCTTCTAA
TAAATACCAAAAAAGGTTCTTACAAGTTATCGCAGGTTATAAAGAATTTGACCCAACAGTGATTC
TTAATAAAAACAAAACGGAAAGTTTTTTTTTGAGATTTTTTGAGAATAATTCAATACAATATTTA
TATCTATAATAAATATATCTATAATAAATACGTAATGTAATAAAATTACATGAATTTTTCTGAAT
TTAGGATAAAAATGAACTCTTTTATCCTATTGATAGAGCCTTCCC
Right flanking sequence: Indices 671354 -- 671853
CATTATATAGGTAGAAATAAAATTGATTTGTAGTAAATAAGAAAAGAGTAATTATCAACAACTTA
TGATCCGTTATACAATTGTATCTTATCTTATAACCTCGAGTAAAACTCCATGCTTATTATTTTTT
ATTTTCACTTTGATTACGATTACTATAAAACTAAATAAAATTGAAACTAAATACTTGTATACTTG
TAAACTTCAAATAAAAAAACTGAATTATGAATTAAATGATCTACTTGATTAAATTTTGATTCAAA
GGACAGAAACCGTGAAGCTGAAATAACTCACTCAGAACACCCTTTAAAAGATTACGCGGTACGAT
TGGGTCGAATAAGCCCTTATGGAATAAATACTCAGCTTCTTGTGACCCATCAGGTACTGTCTTAT
TCAATGTTTGTTCAATTACTCTTTTACCTGCAAATGCAATGTAAGCATTAGGTTCGGCAATAATG
ATATCTCCTAACATACCAAAACTGGCAGTCACCCCGCCGGTTGTA
Found at i:678003 original size:22 final size:22
Alignment explanation
Indices: 677975--678058 Score: 129
Period size: 22 Copynumber: 4.0 Consensus size: 22
677965 CGAATAGAAT
677975 AATAATAAAGAAAGAAAAAGAG
1 AATAATAAAGAAAGAAAAAGAG
677997 AATAATAAAGAAAGAAAAAGA-
1 AATAATAAAGAAAGAAAAAGAG
* *
678018 AAT--TTAGGAAAGAAAAAGAG
1 AATAATAAAGAAAGAAAAAGAG
678038 AATAATAAAGAAAGAAAAAGA
1 AATAATAAAGAAAGAAAAAGA
678059 AATTTAGCTT
Statistics
Matches: 55, Mismatches: 4, Indels: 6
0.85 0.06 0.09
Matches are distributed among these distances:
19 14 0.25
20 3 0.05
21 3 0.05
22 35 0.64
ACGTcount: A:0.71, C:0.00, G:0.18, T:0.11
Consensus pattern (22 bp):
AATAATAAAGAAAGAAAAAGAG
Left flanking sequence: Indices 677475 -- 677974
TATTTGGTAGGTAATATCGATGAAGCTACCGCGAAGGCTATGAACTTAGATGAGGAGAGCAAATT
GAAGAAATGACCTTAAATCTATGTGTACTCACCCCTAATCGAATTGTTTGGGATTCGGAAGTGAA
AGAAATCATTTTATCGACTAATAGCGGACAAATTGGTGTATTACCAAATCACGCACCTATTGCCA
CAGCTGTAGATATAGGAATCTTGAGAATACGTCTTAACGACCAATGGTTAACAATAGCTCTGATG
GGCGGTTTCGCTAGAATAGGCAATAATGAAATAACCATTTTAGTAAATGATGCAGAGAGGGGCAG
TGACATTGATCCGCAAGAAGCTCAACAAACTCTTGAAATAGCTGAAGCTAATTTAAGTAGCGCTG
AAGGCAAGAGACAAACAATTGAGGCAAATTTAGCTCTCCGACGAGCTAGGACGCGAGTCGAGGCT
ATCAATACAATTTTATAACTAGCTGTTGGTGCGTCCGAATAGAAT
Right flanking sequence: Indices 678059 -- 678558
AATTTAGCTTATACCTTATACAATACACCATATTAGGTTAGGATTTTACCGATTGAATCCAATCA
AGTGTAATCAGATTTTGGTGCAACAAAAAATAAAAAAAAAAATAAGAAGAAGTAGTAGGGTATGG
AAAAGATACAAAATCAATCAAAAAAAGAAGGTGGGTAGAAATACTTATTAGATACCGCAGCCAAT
GGTATCTAATAAGTTCTACCTACTATTGGATTTGAACCAATGACTCCTGCCGTATGAAAGCAATA
CTCTAACCGCTGGGTTAAGTAGGTCATTTATTATCATAAAAAAAAAAAAGGAACCCGTCACATTG
ATAGATTATAGATGGAATCTTATTTCTAAGCAATACCCTTGACAGGAAATAGATCAGAGAGCTAT
CATGTCAGATTATGCAATACTCACCTTGCCTTGACAAGAATTTATATAATGATAAAATATTTATC
ACAAACACAAGGGCCATAGCTCAGTTGGTAGAGCACCTCGTTTAC
Found at i:678006 original size:12 final size:11
Alignment explanation
Indices: 677975--678061 Score: 60
Period size: 10 Copynumber: 8.3 Consensus size: 11
677965 CGAATAGAAT
677975 AATAATAAAGA
1 AATAATAAAGA
*
677986 AAGAA-AAAGA
1 AATAATAAAGA
677996 GAATAATAAAGA
1 -AATAATAAAGA
*
678008 AAGAA-AAAGA
1 AATAATAAAGA
* *
678018 AAT--TTAGGA
1 AATAATAAAGA
*
678027 AAGAA-AAAGA
1 AATAATAAAGA
678037 GAATAATAAAGA
1 -AATAATAAAGA
*
678049 AAGAA-AAAGA
1 AATAATAAAGA
678059 AAT
1 AAT
678062 TTAGCTTATA
Statistics
Matches: 57, Mismatches: 12, Indels: 15
0.68 0.14 0.18
Matches are distributed among these distances:
9 5 0.09
10 22 0.39
11 20 0.35
12 10 0.18
ACGTcount: A:0.71, C:0.00, G:0.17, T:0.11
Consensus pattern (11 bp):
AATAATAAAGA
Left flanking sequence: Indices 677475 -- 677974
TATTTGGTAGGTAATATCGATGAAGCTACCGCGAAGGCTATGAACTTAGATGAGGAGAGCAAATT
GAAGAAATGACCTTAAATCTATGTGTACTCACCCCTAATCGAATTGTTTGGGATTCGGAAGTGAA
AGAAATCATTTTATCGACTAATAGCGGACAAATTGGTGTATTACCAAATCACGCACCTATTGCCA
CAGCTGTAGATATAGGAATCTTGAGAATACGTCTTAACGACCAATGGTTAACAATAGCTCTGATG
GGCGGTTTCGCTAGAATAGGCAATAATGAAATAACCATTTTAGTAAATGATGCAGAGAGGGGCAG
TGACATTGATCCGCAAGAAGCTCAACAAACTCTTGAAATAGCTGAAGCTAATTTAAGTAGCGCTG
AAGGCAAGAGACAAACAATTGAGGCAAATTTAGCTCTCCGACGAGCTAGGACGCGAGTCGAGGCT
ATCAATACAATTTTATAACTAGCTGTTGGTGCGTCCGAATAGAAT
Right flanking sequence: Indices 678062 -- 678561
TTAGCTTATACCTTATACAATACACCATATTAGGTTAGGATTTTACCGATTGAATCCAATCAAGT
GTAATCAGATTTTGGTGCAACAAAAAATAAAAAAAAAAATAAGAAGAAGTAGTAGGGTATGGAAA
AGATACAAAATCAATCAAAAAAAGAAGGTGGGTAGAAATACTTATTAGATACCGCAGCCAATGGT
ATCTAATAAGTTCTACCTACTATTGGATTTGAACCAATGACTCCTGCCGTATGAAAGCAATACTC
TAACCGCTGGGTTAAGTAGGTCATTTATTATCATAAAAAAAAAAAAGGAACCCGTCACATTGATA
GATTATAGATGGAATCTTATTTCTAAGCAATACCCTTGACAGGAAATAGATCAGAGAGCTATCAT
GTCAGATTATGCAATACTCACCTTGCCTTGACAAGAATTTATATAATGATAAAATATTTATCACA
AACACAAGGGCCATAGCTCAGTTGGTAGAGCACCTCGTTTACACG
Found at i:678008 original size:18 final size:18
Alignment explanation
Indices: 677985--678050 Score: 60
Period size: 18 Copynumber: 3.4 Consensus size: 18
677975 AATAATAAAG
677985 AAAGAAAAAGAGAATAAT
1 AAAGAAAAAGAGAATAAT
* **
678003 AAAGAAAGAAAAAGAAATTTAGG
1 AAAG-AA-AAAGAG-AA--TAAT
678026 AAAGAAAAAGAGAATAAT
1 AAAGAAAAAGAGAATAAT
678044 AAAGAAA
1 AAAGAAA
678051 GAAAAAGAAA
Statistics
Matches: 37, Mismatches: 6, Indels: 10
0.70 0.11 0.19
Matches are distributed among these distances:
18 13 0.35
19 2 0.05
20 7 0.19
21 7 0.19
22 2 0.05
23 6 0.16
ACGTcount: A:0.71, C:0.00, G:0.18, T:0.11
Consensus pattern (18 bp):
AAAGAAAAAGAGAATAAT
Left flanking sequence: Indices 677485 -- 677984
GTAATATCGATGAAGCTACCGCGAAGGCTATGAACTTAGATGAGGAGAGCAAATTGAAGAAATGA
CCTTAAATCTATGTGTACTCACCCCTAATCGAATTGTTTGGGATTCGGAAGTGAAAGAAATCATT
TTATCGACTAATAGCGGACAAATTGGTGTATTACCAAATCACGCACCTATTGCCACAGCTGTAGA
TATAGGAATCTTGAGAATACGTCTTAACGACCAATGGTTAACAATAGCTCTGATGGGCGGTTTCG
CTAGAATAGGCAATAATGAAATAACCATTTTAGTAAATGATGCAGAGAGGGGCAGTGACATTGAT
CCGCAAGAAGCTCAACAAACTCTTGAAATAGCTGAAGCTAATTTAAGTAGCGCTGAAGGCAAGAG
ACAAACAATTGAGGCAAATTTAGCTCTCCGACGAGCTAGGACGCGAGTCGAGGCTATCAATACAA
TTTTATAACTAGCTGTTGGTGCGTCCGAATAGAATAATAATAAAG
Right flanking sequence: Indices 678051 -- 678550
GAAAAAGAAATTTAGCTTATACCTTATACAATACACCATATTAGGTTAGGATTTTACCGATTGAA
TCCAATCAAGTGTAATCAGATTTTGGTGCAACAAAAAATAAAAAAAAAAATAAGAAGAAGTAGTA
GGGTATGGAAAAGATACAAAATCAATCAAAAAAAGAAGGTGGGTAGAAATACTTATTAGATACCG
CAGCCAATGGTATCTAATAAGTTCTACCTACTATTGGATTTGAACCAATGACTCCTGCCGTATGA
AAGCAATACTCTAACCGCTGGGTTAAGTAGGTCATTTATTATCATAAAAAAAAAAAAGGAACCCG
TCACATTGATAGATTATAGATGGAATCTTATTTCTAAGCAATACCCTTGACAGGAAATAGATCAG
AGAGCTATCATGTCAGATTATGCAATACTCACCTTGCCTTGACAAGAATTTATATAATGATAAAA
TATTTATCACAAACACAAGGGCCATAGCTCAGTTGGTAGAGCACC
Found at i:678030 original size:19 final size:19
Alignment explanation
Indices: 678006--678065 Score: 75
Period size: 19 Copynumber: 3.0 Consensus size: 19
677996 GAATAATAAA
678006 GAAAGAAAAAGAAATTTAG
1 GAAAGAAAAAGAAATTTAG
* *
678025 GAAAGAAAAAGAGAATAATAAA
1 GAAAGAAAAAGA-AAT--TTAG
678047 GAAAGAAAAAGAAATTTAG
1 GAAAGAAAAAGAAATTTAG
678066 CTTATACCTT
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
19 14 0.41
20 3 0.09
21 3 0.09
22 14 0.41
ACGTcount: A:0.67, C:0.00, G:0.20, T:0.13
Consensus pattern (19 bp):
GAAAGAAAAAGAAATTTAG
Left flanking sequence: Indices 677506 -- 678005
CGAAGGCTATGAACTTAGATGAGGAGAGCAAATTGAAGAAATGACCTTAAATCTATGTGTACTCA
CCCCTAATCGAATTGTTTGGGATTCGGAAGTGAAAGAAATCATTTTATCGACTAATAGCGGACAA
ATTGGTGTATTACCAAATCACGCACCTATTGCCACAGCTGTAGATATAGGAATCTTGAGAATACG
TCTTAACGACCAATGGTTAACAATAGCTCTGATGGGCGGTTTCGCTAGAATAGGCAATAATGAAA
TAACCATTTTAGTAAATGATGCAGAGAGGGGCAGTGACATTGATCCGCAAGAAGCTCAACAAACT
CTTGAAATAGCTGAAGCTAATTTAAGTAGCGCTGAAGGCAAGAGACAAACAATTGAGGCAAATTT
AGCTCTCCGACGAGCTAGGACGCGAGTCGAGGCTATCAATACAATTTTATAACTAGCTGTTGGTG
CGTCCGAATAGAATAATAATAAAGAAAGAAAAAGAGAATAATAAA
Right flanking sequence: Indices 678066 -- 678565
CTTATACCTTATACAATACACCATATTAGGTTAGGATTTTACCGATTGAATCCAATCAAGTGTAA
TCAGATTTTGGTGCAACAAAAAATAAAAAAAAAAATAAGAAGAAGTAGTAGGGTATGGAAAAGAT
ACAAAATCAATCAAAAAAAGAAGGTGGGTAGAAATACTTATTAGATACCGCAGCCAATGGTATCT
AATAAGTTCTACCTACTATTGGATTTGAACCAATGACTCCTGCCGTATGAAAGCAATACTCTAAC
CGCTGGGTTAAGTAGGTCATTTATTATCATAAAAAAAAAAAAGGAACCCGTCACATTGATAGATT
ATAGATGGAATCTTATTTCTAAGCAATACCCTTGACAGGAAATAGATCAGAGAGCTATCATGTCA
GATTATGCAATACTCACCTTGCCTTGACAAGAATTTATATAATGATAAAATATTTATCACAAACA
CAAGGGCCATAGCTCAGTTGGTAGAGCACCTCGTTTACACGCGCG
Found at i:678041 original size:41 final size:41
Alignment explanation
Indices: 677984--678065 Score: 164
Period size: 41 Copynumber: 2.0 Consensus size: 41
677974 TAATAATAAA
677984 GAAAGAAAAAGAGAATAATAAAGAAAGAAAAAGAAATTTAG
1 GAAAGAAAAAGAGAATAATAAAGAAAGAAAAAGAAATTTAG
678025 GAAAGAAAAAGAGAATAATAAAGAAAGAAAAAGAAATTTAG
1 GAAAGAAAAAGAGAATAATAAAGAAAGAAAAAGAAATTTAG
678066 CTTATACCTT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.68, C:0.00, G:0.20, T:0.12
Consensus pattern (41 bp):
GAAAGAAAAAGAGAATAATAAAGAAAGAAAAAGAAATTTAG
Left flanking sequence: Indices 677484 -- 677983
GGTAATATCGATGAAGCTACCGCGAAGGCTATGAACTTAGATGAGGAGAGCAAATTGAAGAAATG
ACCTTAAATCTATGTGTACTCACCCCTAATCGAATTGTTTGGGATTCGGAAGTGAAAGAAATCAT
TTTATCGACTAATAGCGGACAAATTGGTGTATTACCAAATCACGCACCTATTGCCACAGCTGTAG
ATATAGGAATCTTGAGAATACGTCTTAACGACCAATGGTTAACAATAGCTCTGATGGGCGGTTTC
GCTAGAATAGGCAATAATGAAATAACCATTTTAGTAAATGATGCAGAGAGGGGCAGTGACATTGA
TCCGCAAGAAGCTCAACAAACTCTTGAAATAGCTGAAGCTAATTTAAGTAGCGCTGAAGGCAAGA
GACAAACAATTGAGGCAAATTTAGCTCTCCGACGAGCTAGGACGCGAGTCGAGGCTATCAATACA
ATTTTATAACTAGCTGTTGGTGCGTCCGAATAGAATAATAATAAA
Right flanking sequence: Indices 678066 -- 678565
CTTATACCTTATACAATACACCATATTAGGTTAGGATTTTACCGATTGAATCCAATCAAGTGTAA
TCAGATTTTGGTGCAACAAAAAATAAAAAAAAAAATAAGAAGAAGTAGTAGGGTATGGAAAAGAT
ACAAAATCAATCAAAAAAAGAAGGTGGGTAGAAATACTTATTAGATACCGCAGCCAATGGTATCT
AATAAGTTCTACCTACTATTGGATTTGAACCAATGACTCCTGCCGTATGAAAGCAATACTCTAAC
CGCTGGGTTAAGTAGGTCATTTATTATCATAAAAAAAAAAAAGGAACCCGTCACATTGATAGATT
ATAGATGGAATCTTATTTCTAAGCAATACCCTTGACAGGAAATAGATCAGAGAGCTATCATGTCA
GATTATGCAATACTCACCTTGCCTTGACAAGAATTTATATAATGATAAAATATTTATCACAAACA
CAAGGGCCATAGCTCAGTTGGTAGAGCACCTCGTTTACACGCGCG
Found at i:679995 original size:19 final size:17
Alignment explanation
Indices: 679961--680013 Score: 54
Period size: 17 Copynumber: 3.1 Consensus size: 17
679951 ATGCCCTCTG
679961 TTGTTATATTGTTATAT
1 TTGTTATATTGTTATAT
679978 TTGTTATATAT-TTATAT
1 TTGTTATAT-TGTTATAT
* * *
679995 ATATTAATATTATTATAT
1 TTGTT-ATATTGTTATAT
680013 T
1 T
680014 ATTATTAATA
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
17 19 0.63
18 11 0.37
ACGTcount: A:0.32, C:0.00, G:0.06, T:0.62
Consensus pattern (17 bp):
TTGTTATATTGTTATAT
Left flanking sequence: Indices 679461 -- 679960
AACTCAAATAAATTTCAATGGAACCAATCGACTGATATTTTCCAAATTTAGGATAAGCAAACCCA
TTCTTTTTCATTTTCATTAATTTTCCTGAGTGAATTACATAGCTAAAAAAATGTCCCTTTTCCTA
TCCATGATCAAATAGTTAGTATACCTTTCTTTGGTATACCTAAAGAAATAGTTATTTTTTAAGGT
AAGATCATGACATGAGCCCGGATAATATACTCAAACTCAATTGCTCATGATTCAAAAGGCAATAA
AATTTGGGATCCGTTTGCACTTAGACGAGTTAGGAACCCCGAACTTATTCACTTCACTTTTTGCG
AAAGAGCAACCCAACTCATTGTTTCAGAGAGAATGAATTGATCCTAAATCCCCACCTATTTTTGG
TTTTGGGTATAGGAACCTATGCGTTGTTATATGTAAGGGCTCCTCGCAATTCAACGCATTGAATA
CAATAAGTCTCGTACTGGGAGATATAATAAAATAAATGCCCTCTG
Right flanking sequence: Indices 680014 -- 680513
ATTATTAATATATAAAATATATAGATATTTTCCTTTTTTTTTTTAGTTTAAGATAAAATAAAAAA
AAAAAATGAATTAAATTTTAGAGAATTCTAAATATTAAGTGTAATGTAAATAGTATTTTATATTC
GACAAATCTTAAAATGAGACCCGGTCCCAGCAAACAAAAAAATGGGTGGTTCAATCCAAATAAAC
TTTATAGGTATTTCGAAAGTTATGGATGAATTCACAATTCCAATTCGAATCGACTAATCTTACTA
TATTTTTATATTTTGCACATTCATCATTCATAGGAGTGCTTCTATGTTTCTGCTTCACGAATATG
ATATTTTCTGGACATTTCTAATAATATCAAGTGTTATTCCTATTTTGGCATTTATAATTTCCGGA
GTTTTGGCCCCAATTAACGAAGGGCCAGAAAAACTTTGTAGTTATGAATCGGGTATAGAACCAAT
GGGCAATGCTTGGTTACAATTCCGAATCCGTTATTATATGTTTGC
Found at i:684151 original size:24 final size:21
Alignment explanation
Indices: 684096--684138 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
684086 GTATTTTTTC
684096 TTTAGATTATATTTATTAGAT
1 TTTAGATTATATTTATTAGAT
684117 TTTAGATTATATTTATTAGAT
1 TTTAGATTATATTTATTAGAT
684138 T
1 T
684139 ATAGTAGATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.33, C:0.00, G:0.09, T:0.58
Consensus pattern (21 bp):
TTTAGATTATATTTATTAGAT
Left flanking sequence: Indices 683596 -- 684095
TATAGTATATTATAGTATATAAATTATATAATTATAATATAGTATATAAAAAAGTGTCTCTATTT
CCATTTCCTCCTATTTGTTTGATCTCTTATCTATTTTCATTTTCTATTTTATTTCATATCATGGT
AGGACCTTTATTTTTATTTAGTCCAATCGAAAATGATTCTATCATTGATGTATCCGCAATTCAAT
ATGGATGGATATATAACAGATATATATGTCTCTTTTATTATCTTTTTTTTTTATACTCAAACGGT
CAATTCTTTTTTTCGCCCTACCCCTTCTTTATCTTTCTGAATTAAAACAGAGGAATGTCTCATTG
TATATACTCCGGGTTGTATCCTTACTTAATCTGAATCCTTATCTTTTCCTTAGGACCATCCCTGT
ATAATTAGAATAAAGTTATTGATATACCCTATAACATCATTCTATTAATTGTTATTTAAATTCTA
TTTATCTATAATCTAAAGACTAAAGAAATTAAAAAGTATTTTTTC
Right flanking sequence: Indices 684139 -- 684638
ATAGTAGATTATAGTGTGTAACATAGTATTTTTCATTTTGTTTAATCGGGAGAGATGGCTGAGTG
GACTAAAGCGTCGGATTGCTAATCCGTTGTACGAGTTATTCGTACCGAGGGTTCGAATCCCTCTC
TTTCCGTAACTTCCTTCACCTAATTCACGAACATTACTGACCGCAATGTATCAAATACAAATAAA
ATAACAACAATAGAAAACTTATAAATATAATATGGACCGGACCCATATTATATTTTTATATTTAT
TTTATTATTTTTATTTTATTATTTTGGTTAAAATCGGAATCAAAGCCAATATAAGGTAATGGCTC
CAGAGAATTACAAAATTGTTCAAACGAGGAATCATTTTGTAATTGCCTTGCATTTAGCGATAATT
GATATTGAGTAAGAGCTTCTGTTTGTTGAATCCTTTTGGCTCTTTTATTTATGGAAGAATTTATA
TAAATATTTTTTGGTTCCCGGCCCGACAAGGATAAACGAGAACGA
Found at i:684421 original size:14 final size:14
Alignment explanation
Indices: 684389--684423 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
684379 TATTATATTT
*
684389 TTATATTTATTTTA
1 TTATTTTTATTTTA
684403 TTATTTTTATTTTA
1 TTATTTTTATTTTA
684417 TTATTTT
1 TTATTTT
684424 GGTTAAAATC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (14 bp):
TTATTTTTATTTTA
Left flanking sequence: Indices 683889 -- 684388
TTTCTGAATTAAAACAGAGGAATGTCTCATTGTATATACTCCGGGTTGTATCCTTACTTAATCTG
AATCCTTATCTTTTCCTTAGGACCATCCCTGTATAATTAGAATAAAGTTATTGATATACCCTATA
ACATCATTCTATTAATTGTTATTTAAATTCTATTTATCTATAATCTAAAGACTAAAGAAATTAAA
AAGTATTTTTTCTTTAGATTATATTTATTAGATTTTAGATTATATTTATTAGATTATAGTAGATT
ATAGTGTGTAACATAGTATTTTTCATTTTGTTTAATCGGGAGAGATGGCTGAGTGGACTAAAGCG
TCGGATTGCTAATCCGTTGTACGAGTTATTCGTACCGAGGGTTCGAATCCCTCTCTTTCCGTAAC
TTCCTTCACCTAATTCACGAACATTACTGACCGCAATGTATCAAATACAAATAAAATAACAACAA
TAGAAAACTTATAAATATAATATGGACCGGACCCATATTATATTT
Right flanking sequence: Indices 684424 -- 684923
GGTTAAAATCGGAATCAAAGCCAATATAAGGTAATGGCTCCAGAGAATTACAAAATTGTTCAAAC
GAGGAATCATTTTGTAATTGCCTTGCATTTAGCGATAATTGATATTGAGTAAGAGCTTCTGTTTG
TTGAATCCTTTTGGCTCTTTTATTTATGGAAGAATTTATATAAATATTTTTTGGTTCCCGGCCCG
ACAAGGATAAACGAGAACGAAAGCGATTTTCCATGGTTTTTCTTTCTCCAAGTGTACTTTGCTCA
TTCGGTCGCCTGCCATTTAATGTATCTTTAAGATACGACTTTATCATGCATAATTTTTCAAACTC
CAGATCCGGTGCGTTTTTTTTGTTTCTTGAAAATATCATCTCACGTGTGTTCCTTTGGTTAACCC
AGCATAAACTTTTATCCAGCCATCCATCCAGGGATGAATTTGTTAATAATAATTCATTCAATAAA
TTTATAATATTTTTAGTATTATCTTATGAGCAGCCGTCTTGGCTA
Found at i:686224 original size:16 final size:16
Alignment explanation
Indices: 686203--686235 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
686193 TTTTTTACGA
686203 GCAAGGTTAGAGATAG
1 GCAAGGTTAGAGATAG
686219 GCAAGGTTAGAGATAG
1 GCAAGGTTAGAGATAG
686235 G
1 G
686236 AAAAAGATTC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.36, C:0.06, G:0.39, T:0.18
Consensus pattern (16 bp):
GCAAGGTTAGAGATAG
Left flanking sequence: Indices 685703 -- 686202
AAAGCCATCGACATATTGTTTCAGCTCGGCGGAAACACAATTATTTTCCTCAGGATTCTCACAAG
TGGAAATAAAGAACGAAGTAACTAGAAGGATTTGTTATAATATAATTAGAATTCTGCTCTTCTAG
AGGGATCATCTAAAAAGCGAGTTGTTTTGGATGTATTCAGACAGAAAAGCTGACATAGATGTTAT
GGATCTCTTTTGTTATTGCTTTTTAGTGTGTTTACGACTTAGATCTGGGAATCCGGCTTCCATAA
AGGAGCCGAATGAAACAAAAGTTTCATGTTCGGTTTTGAATTAGAGACGCTCAATTTTTAAATGA
GGAATTGGCGTCGACTATAACCCCTAGCCTTCCAAGCTAACGATGCGGGTTCGATTCCCGCTACC
CGCTCTCGATATTCATTATGATAATGATGCGTGTATCATTAATGTGAATAAATGTAACTACACAT
CTTTATTCCGTAAATTATCTCCCATACAATCTTATTTTTTTACGA
Right flanking sequence: Indices 686236 -- 686735
AAAAAGATTCGAAAGAAAAAAAGTCGGAATGAAAAGCGTCCATTGTCTAATGGATAGGACAGAGG
TCTTCTAAACCTTTGGTATAGGTTCAAATCCTATTGGACGCAATTTGTTTCCATCTATTTTTTAT
ATTCAATTTCTATAAGTCAAAAAAAAATTTGAATGATTTGAGTGAGAGAAGTTTATGAACCATTC
CCTTTCTTTGTACTAGTAAATTTCCCTTATACTAAGATCAATTTCTTTATGTTTGTTCCTGAAGT
ATAAATCGCTCCATCTGTTCCTGAATAGCTTCCTTCAAAAGAACTTCTGCTTCTTCGGTGAATGT
CTTGGTAGAAGATATGATTTCTTGGAACTGAGGTTTATTACTTTTTAAGTAGGTGCGTAATTGAA
CGAGAAATTTCTTTACTTGTCCAATTTCTAACGAATCAAGATACCCATTTGTTCCGGTATAAATC
GTCACTATCTGTTCTTCCACCGTTAGAGGGGCTGCTTGAGATTGT
Found at i:688662 original size:28 final size:28
Alignment explanation
Indices: 688608--688664 Score: 80
Period size: 28 Copynumber: 2.0 Consensus size: 28
688598 GTATCACTTT
* *
688608 TTTATTTATATAATATTTAATTTTAATA
1 TTTATTTATATAATATATAATTATAATA
688636 TTTATTTATATAATA-ATAATATATAATA
1 TTTATTTATATAATATATAAT-TATAATA
688664 T
1 T
688665 ATAATGTTTA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
27 4 0.15
28 22 0.85
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (28 bp):
TTTATTTATATAATATATAATTATAATA
Left flanking sequence: Indices 688108 -- 688607
TAGCACCGATGGTGCGTAAATGTAACTCGTTGTTCAAACAACTATTCAGAGTTCCTAGAGCTCCT
TGTAAGGCTTGTTGAAAAACGCGTTGTCTGACTTGATTAATCGCTCTTTGTTGTTCAAACTGAAT
GGTTTCGTTTTTGTAATTTTCTAATCGTTCCAAATTCTGATAAATTGAATTAATCAAATTCAATT
TTTCTCGTTCTATCTCGGAATATCCATTCACTCGAAACTCATCCGCTTCTATTTTCACTTTTCGT
AAGCGGGTCTTGGCCTTTTCCAGCCTTTCAATGGACCCTCCGCGTAGCTCTTCTGAATTTCGAAT
AGTACTCAAGATTCTCTGTTTTCGATTATCTAATAAATCACTTAATGAAAGTAGATTATCTTCCC
ATTACAATTAATTTTAACAATTCCATGACCTCTTCCCGAACCAAACAGGAATCTTTCGATTCATT
TGGCTCTCACGCTCACTTACTTATGGGGCATTCCCGTATCACTTT
Right flanking sequence: Indices 688665 -- 689164
ATAATGTTTATATTAATTAATGTTTATATTAATGTTTATATATAATGTTTAGTTTATATAATATA
TAATATTTATATAATGAGCTTATCCTCTCTTTTCTGTTCGGATTTCAAAATATTGAAACGGATCG
TTGATCCAAGACCAGAATATTCGGAGGACTCTTCCGACCAGACAAAAAATCTGTAATTATCGGCA
AAGTTGTTTCTTTTTTTTTATTCAAATCCAAAAAATTCCGCTTACTTTATACATAGGTCGTCGAT
TCCGCATTGGATAAAAAAGTAGGGGATTCCCGTTTTTCCAGTAACAGTAAAAGGTTCAAATCATT
TTATCGATATGAGTGTTCTATATCGGATAAAATGCAAGGATTCGTTTTGAAACTCTCGCCATACT
AACATAGATAGTGGTAGAAAGAACACCAACGTTGCGCCCAGACTTCAAACAATTTAGCTTTAACC
ATGTTTAGGCCCCCATATTATTGGTTGATAGAGAATCAAAGTGTA
Found at i:688676 original size:18 final size:18
Alignment explanation
Indices: 688655--688744 Score: 63
Period size: 16 Copynumber: 5.4 Consensus size: 18
688645 ATAATAATAA
688655 TATATAATATATAATGTT
1 TATATAATATATAATGTT
*
688673 TATATTA-AT-TAATGTT
1 TATATAATATATAATGTT
*
688689 TATAT--TA-AT-GT-TT
1 TATATAATATATAATGTT
* *
688702 ATATATAATGT-TTA-GTT
1 -TATATAATATATAATGTT
*
688719 TATATAATATATAATATT
1 TATATAATATATAATGTT
688737 TATATAAT
1 TATATAAT
688745 GAGCTTATCC
Statistics
Matches: 55, Mismatches: 7, Indels: 20
0.67 0.09 0.24
Matches are distributed among these distances:
13 2 0.04
14 6 0.11
15 2 0.04
16 23 0.42
17 6 0.11
18 16 0.29
ACGTcount: A:0.41, C:0.00, G:0.06, T:0.53
Consensus pattern (18 bp):
TATATAATATATAATGTT
Left flanking sequence: Indices 688155 -- 688654
AGAGTTCCTAGAGCTCCTTGTAAGGCTTGTTGAAAAACGCGTTGTCTGACTTGATTAATCGCTCT
TTGTTGTTCAAACTGAATGGTTTCGTTTTTGTAATTTTCTAATCGTTCCAAATTCTGATAAATTG
AATTAATCAAATTCAATTTTTCTCGTTCTATCTCGGAATATCCATTCACTCGAAACTCATCCGCT
TCTATTTTCACTTTTCGTAAGCGGGTCTTGGCCTTTTCCAGCCTTTCAATGGACCCTCCGCGTAG
CTCTTCTGAATTTCGAATAGTACTCAAGATTCTCTGTTTTCGATTATCTAATAAATCACTTAATG
AAAGTAGATTATCTTCCCATTACAATTAATTTTAACAATTCCATGACCTCTTCCCGAACCAAACA
GGAATCTTTCGATTCATTTGGCTCTCACGCTCACTTACTTATGGGGCATTCCCGTATCACTTTTT
TATTTATATAATATTTAATTTTAATATTTATTTATATAATAATAA
Right flanking sequence: Indices 688745 -- 689244
GAGCTTATCCTCTCTTTTCTGTTCGGATTTCAAAATATTGAAACGGATCGTTGATCCAAGACCAG
AATATTCGGAGGACTCTTCCGACCAGACAAAAAATCTGTAATTATCGGCAAAGTTGTTTCTTTTT
TTTTATTCAAATCCAAAAAATTCCGCTTACTTTATACATAGGTCGTCGATTCCGCATTGGATAAA
AAAGTAGGGGATTCCCGTTTTTCCAGTAACAGTAAAAGGTTCAAATCATTTTATCGATATGAGTG
TTCTATATCGGATAAAATGCAAGGATTCGTTTTGAAACTCTCGCCATACTAACATAGATAGTGGT
AGAAAGAACACCAACGTTGCGCCCAGACTTCAAACAATTTAGCTTTAACCATGTTTAGGCCCCCA
TATTATTGGTTGATAGAGAATCAAAGTGTATTTACCAACGAATCACGAAATGCTATGGTTCGTAC
ATATGATTTCTGAATTGATTCAGAAGTAATTCGCGGGATCGTGCA
Found at i:688685 original size:16 final size:16
Alignment explanation
Indices: 688666--688697 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
688656 ATATAATATA
688666 TAATGTTTATATTAAT
1 TAATGTTTATATTAAT
688682 TAATGTTTATATTAAT
1 TAATGTTTATATTAAT
688698 GTTTATATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.38, C:0.00, G:0.06, T:0.56
Consensus pattern (16 bp):
TAATGTTTATATTAAT
Left flanking sequence: Indices 688166 -- 688665
AGCTCCTTGTAAGGCTTGTTGAAAAACGCGTTGTCTGACTTGATTAATCGCTCTTTGTTGTTCAA
ACTGAATGGTTTCGTTTTTGTAATTTTCTAATCGTTCCAAATTCTGATAAATTGAATTAATCAAA
TTCAATTTTTCTCGTTCTATCTCGGAATATCCATTCACTCGAAACTCATCCGCTTCTATTTTCAC
TTTTCGTAAGCGGGTCTTGGCCTTTTCCAGCCTTTCAATGGACCCTCCGCGTAGCTCTTCTGAAT
TTCGAATAGTACTCAAGATTCTCTGTTTTCGATTATCTAATAAATCACTTAATGAAAGTAGATTA
TCTTCCCATTACAATTAATTTTAACAATTCCATGACCTCTTCCCGAACCAAACAGGAATCTTTCG
ATTCATTTGGCTCTCACGCTCACTTACTTATGGGGCATTCCCGTATCACTTTTTTATTTATATAA
TATTTAATTTTAATATTTATTTATATAATAATAATATATAATATA
Right flanking sequence: Indices 688698 -- 689197
GTTTATATATAATGTTTAGTTTATATAATATATAATATTTATATAATGAGCTTATCCTCTCTTTT
CTGTTCGGATTTCAAAATATTGAAACGGATCGTTGATCCAAGACCAGAATATTCGGAGGACTCTT
CCGACCAGACAAAAAATCTGTAATTATCGGCAAAGTTGTTTCTTTTTTTTTATTCAAATCCAAAA
AATTCCGCTTACTTTATACATAGGTCGTCGATTCCGCATTGGATAAAAAAGTAGGGGATTCCCGT
TTTTCCAGTAACAGTAAAAGGTTCAAATCATTTTATCGATATGAGTGTTCTATATCGGATAAAAT
GCAAGGATTCGTTTTGAAACTCTCGCCATACTAACATAGATAGTGGTAGAAAGAACACCAACGTT
GCGCCCAGACTTCAAACAATTTAGCTTTAACCATGTTTAGGCCCCCATATTATTGGTTGATAGAG
AATCAAAGTGTATTTACCAACGAATCACGAAATGCTATGGTTCGT
Found at i:688695 original size:12 final size:12
Alignment explanation
Indices: 688680--688715 Score: 63
Period size: 12 Copynumber: 2.9 Consensus size: 12
688670 GTTTATATTA
688680 ATTAATGTTTAT
1 ATTAATGTTTAT
688692 ATTAATGTTTAT
1 ATTAATGTTTAT
688704 ATATAATGTTTA
1 AT-TAATGTTTA
688716 GTTTATATAA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
12 14 0.61
13 9 0.39
ACGTcount: A:0.36, C:0.00, G:0.08, T:0.56
Consensus pattern (12 bp):
ATTAATGTTTAT
Left flanking sequence: Indices 688180 -- 688679
CTTGTTGAAAAACGCGTTGTCTGACTTGATTAATCGCTCTTTGTTGTTCAAACTGAATGGTTTCG
TTTTTGTAATTTTCTAATCGTTCCAAATTCTGATAAATTGAATTAATCAAATTCAATTTTTCTCG
TTCTATCTCGGAATATCCATTCACTCGAAACTCATCCGCTTCTATTTTCACTTTTCGTAAGCGGG
TCTTGGCCTTTTCCAGCCTTTCAATGGACCCTCCGCGTAGCTCTTCTGAATTTCGAATAGTACTC
AAGATTCTCTGTTTTCGATTATCTAATAAATCACTTAATGAAAGTAGATTATCTTCCCATTACAA
TTAATTTTAACAATTCCATGACCTCTTCCCGAACCAAACAGGAATCTTTCGATTCATTTGGCTCT
CACGCTCACTTACTTATGGGGCATTCCCGTATCACTTTTTTATTTATATAATATTTAATTTTAAT
ATTTATTTATATAATAATAATATATAATATATAATGTTTATATTA
Right flanking sequence: Indices 688716 -- 689215
GTTTATATAATATATAATATTTATATAATGAGCTTATCCTCTCTTTTCTGTTCGGATTTCAAAAT
ATTGAAACGGATCGTTGATCCAAGACCAGAATATTCGGAGGACTCTTCCGACCAGACAAAAAATC
TGTAATTATCGGCAAAGTTGTTTCTTTTTTTTTATTCAAATCCAAAAAATTCCGCTTACTTTATA
CATAGGTCGTCGATTCCGCATTGGATAAAAAAGTAGGGGATTCCCGTTTTTCCAGTAACAGTAAA
AGGTTCAAATCATTTTATCGATATGAGTGTTCTATATCGGATAAAATGCAAGGATTCGTTTTGAA
ACTCTCGCCATACTAACATAGATAGTGGTAGAAAGAACACCAACGTTGCGCCCAGACTTCAAACA
ATTTAGCTTTAACCATGTTTAGGCCCCCATATTATTGGTTGATAGAGAATCAAAGTGTATTTACC
AACGAATCACGAAATGCTATGGTTCGTACATATGATTTCTGAATT
Found at i:688722 original size:16 final size:16
Alignment explanation
Indices: 688686--688726 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 16
688676 ATTAATTAAT
688686 GTTTATATTAATGTTTA
1 GTTTATA-TAATGTTTA
688703 ---TATATAATGTTTA
1 GTTTATATAATGTTTA
688716 GTTTATATAAT
1 GTTTATATAAT
688727 ATATAATATT
Statistics
Matches: 21, Mismatches: 0, Indels: 7
0.75 0.00 0.25
Matches are distributed among these distances:
13 9 0.43
14 4 0.19
16 8 0.38
ACGTcount: A:0.34, C:0.00, G:0.10, T:0.56
Consensus pattern (16 bp):
GTTTATATAATGTTTA
Left flanking sequence: Indices 688186 -- 688685
GAAAAACGCGTTGTCTGACTTGATTAATCGCTCTTTGTTGTTCAAACTGAATGGTTTCGTTTTTG
TAATTTTCTAATCGTTCCAAATTCTGATAAATTGAATTAATCAAATTCAATTTTTCTCGTTCTAT
CTCGGAATATCCATTCACTCGAAACTCATCCGCTTCTATTTTCACTTTTCGTAAGCGGGTCTTGG
CCTTTTCCAGCCTTTCAATGGACCCTCCGCGTAGCTCTTCTGAATTTCGAATAGTACTCAAGATT
CTCTGTTTTCGATTATCTAATAAATCACTTAATGAAAGTAGATTATCTTCCCATTACAATTAATT
TTAACAATTCCATGACCTCTTCCCGAACCAAACAGGAATCTTTCGATTCATTTGGCTCTCACGCT
CACTTACTTATGGGGCATTCCCGTATCACTTTTTTATTTATATAATATTTAATTTTAATATTTAT
TTATATAATAATAATATATAATATATAATGTTTATATTAATTAAT
Right flanking sequence: Indices 688727 -- 689226
ATATAATATTTATATAATGAGCTTATCCTCTCTTTTCTGTTCGGATTTCAAAATATTGAAACGGA
TCGTTGATCCAAGACCAGAATATTCGGAGGACTCTTCCGACCAGACAAAAAATCTGTAATTATCG
GCAAAGTTGTTTCTTTTTTTTTATTCAAATCCAAAAAATTCCGCTTACTTTATACATAGGTCGTC
GATTCCGCATTGGATAAAAAAGTAGGGGATTCCCGTTTTTCCAGTAACAGTAAAAGGTTCAAATC
ATTTTATCGATATGAGTGTTCTATATCGGATAAAATGCAAGGATTCGTTTTGAAACTCTCGCCAT
ACTAACATAGATAGTGGTAGAAAGAACACCAACGTTGCGCCCAGACTTCAAACAATTTAGCTTTA
ACCATGTTTAGGCCCCCATATTATTGGTTGATAGAGAATCAAAGTGTATTTACCAACGAATCACG
AAATGCTATGGTTCGTACATATGATTTCTGAATTGATTCAGAAGT
Found at i:689508 original size:16 final size:16
Alignment explanation
Indices: 689487--689518 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
689477 TATAGACTTA
689487 TAGATAGGACTAAATT
1 TAGATAGGACTAAATT
689503 TAGATAGGACTAAATT
1 TAGATAGGACTAAATT
689519 GAACAGAGTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.44, C:0.06, G:0.19, T:0.31
Consensus pattern (16 bp):
TAGATAGGACTAAATT
Left flanking sequence: Indices 688987 -- 689486
ATTTTATCGATATGAGTGTTCTATATCGGATAAAATGCAAGGATTCGTTTTGAAACTCTCGCCAT
ACTAACATAGATAGTGGTAGAAAGAACACCAACGTTGCGCCCAGACTTCAAACAATTTAGCTTTA
ACCATGTTTAGGCCCCCATATTATTGGTTGATAGAGAATCAAAGTGTATTTACCAACGAATCACG
AAATGCTATGGTTCGTACATATGATTTCTGAATTGATTCAGAAGTAATTCGCGGGATCGTGCACC
TTTCTTTCCTAGTTATAAAGAAAAAAGTGCAGCTGGTTAGATCCAGCTTATTCTTGAAATAAACA
ACTCGCACACACTCCCTTTCCAAAAAAAATCAATACACCAAGGACTACACTTAGATTTATTGGAT
TTGTTGCTAAAATATCGGTATTAAATCCGAAACTCCCGGCGGATGGCCAGTGACCCAAGGAAACG
AAAGAATCGGTTACATTTTTCATATGATCTCCTCTTATAGACTTA
Right flanking sequence: Indices 689519 -- 690018
GAACAGAGTTCTTTTTGTATTACTTCACCCTTTGTTGATTTTGTTGATTTTCTTTTTTTCCATAT
TTCTCAATCTATTTAATTTCAATTGAACCCCCCCAAAAAAAAATACTTAATTAATTTATTAATTA
ATTTAAATTTAATTATAATTAGGTCCCAGGCCAGGTATCATATCAATTACGAAATATCTCGTTCG
TTCGTTGCAAGGCGTACTAAAAAAGGGGGTTCCATTGGACCGAGAACGGGAAGGAAAAAAGCGAG
TGGATCCGCTAATTCCTGATCCTCAAATTAGTCCTTCCCACGGGGTATTATCTCAACGAATAAGT
TAAAGTTATTGTAGGATTGAAATCTTGATATAATTTGAAAAAATAAAGCGGCAAAGCAAATCTAA
GATAATAAAATAAGAAAGATAAAAATAAGACTTTCCCGTTTATTTCGAGGATTAAACAAAAGGAT
TTGCAAATAAAAGCGCTAATGCCACGACCAGTCCATAAATTGTTA
Found at i:692257 original size:33 final size:33
Alignment explanation
Indices: 692215--692281 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
692205 GAATATCCCC
692215 AGCAATTTTGATCTCTTTTTCGATATTCAGGAT
1 AGCAATTTTGATCTCTTTTTCGATATTCAGGAT
692248 AGCAATTTTGATCTCTTTTTCGATATTCAGGAT
1 AGCAATTTTGATCTCTTTTTCGATATTCAGGAT
692281 A
1 A
692282 TAGTAACCGA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.25, C:0.15, G:0.15, T:0.45
Consensus pattern (33 bp):
AGCAATTTTGATCTCTTTTTCGATATTCAGGAT
Left flanking sequence: Indices 691715 -- 692214
CTCCCCATGAGGTAACTGTATGATTTTCCAAGGTAAAAGAGCCCCCGACCAGTTGGAAACAAAAA
TAAATAAAAACATAGTTCCAATAAAAGGAACCCAAGGGCCATATTCTTCTCCAATTTGAGTTTTG
CTCAAGTCTCGAATGAATTCAAGGACATATTCGAAAAAATTCTGACCGTCAGTCGGAATGGTTTG
TGGATTCCGAACAGCTATAGTAGCAGAACCTAATAAGATAGCAATTACGAACCAAGAAGTAATAA
GTACTTGGGCATGAACTTGGAAATCTCCTATTTGCCAATAGAAATGTTGGCCTACTTCTACACCG
GAGATATCGTATAACCTTTTTAGTGTGTTGATGGAACATGGTAGAACATTCATATTGCCCTCTGA
CATAAATAGAACTTAAAAAGGAATTATTTTTATTTAACTATCTCTTTATTGATTCGCCTACTTTA
ACTGAATTGTATATTTCGAATACTAAGTAACTACAGAATATCCCC
Right flanking sequence: Indices 692282 -- 692781
TAGTAACCGATTCCATAAATTAATGGAATTCACGAAGTAATTGACTTATCTTATTATTATTCTTA
ATTCTTATTTATCTTAATTCTTATTTATCTTTATAGCTAGAACGACCCTCACAAATTGCTGATAC
TAATTTGTTAAGAATTAATCGGATTGAAGCTATGGCGTCATCATTGGCTGGAATCGAAATATCTG
CAATATCTGGGTCACAATTTGTATCGATTAAACAAACTGTTGGAATTCCCAAAGTAACACATTCT
CGAAGAGCTGTATATTCTTCTTGCTGATCGACGATGATTACAATATCAGGCAACCCCGTCATATA
TTTGATCCCACCTAGATATGTTTGCAAGTGAGATAATTGTCTCTTCAGCATTGCCGCATCTCGTT
TCGGAAGACGGTTGAGTCTTCCCGTCTTTTGTTCCGCTCTCAAGTCCCTGAACTTATGAAGTCTT
GTTTTTGTAGTGGACCAGTTCGTTGACATACCACCGAGCCATTTT
Found at i:692361 original size:16 final size:16
Alignment explanation
Indices: 692342--692377 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
692332 TTATTATTAT
692342 TCTTAATTCTTATTTA
1 TCTTAATTCTTATTTA
692358 TCTTAATTCTTATTTA
1 TCTTAATTCTTATTTA
692374 TCTT
1 TCTT
692378 TATAGCTAGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.22, C:0.14, G:0.00, T:0.64
Consensus pattern (16 bp):
TCTTAATTCTTATTTA
Left flanking sequence: Indices 691842 -- 692341
TTGCTCAAGTCTCGAATGAATTCAAGGACATATTCGAAAAAATTCTGACCGTCAGTCGGAATGGT
TTGTGGATTCCGAACAGCTATAGTAGCAGAACCTAATAAGATAGCAATTACGAACCAAGAAGTAA
TAAGTACTTGGGCATGAACTTGGAAATCTCCTATTTGCCAATAGAAATGTTGGCCTACTTCTACA
CCGGAGATATCGTATAACCTTTTTAGTGTGTTGATGGAACATGGTAGAACATTCATATTGCCCTC
TGACATAAATAGAACTTAAAAAGGAATTATTTTTATTTAACTATCTCTTTATTGATTCGCCTACT
TTAACTGAATTGTATATTTCGAATACTAAGTAACTACAGAATATCCCCAGCAATTTTGATCTCTT
TTTCGATATTCAGGATAGCAATTTTGATCTCTTTTTCGATATTCAGGATATAGTAACCGATTCCA
TAAATTAATGGAATTCACGAAGTAATTGACTTATCTTATTATTAT
Right flanking sequence: Indices 692378 -- 692877
TATAGCTAGAACGACCCTCACAAATTGCTGATACTAATTTGTTAAGAATTAATCGGATTGAAGCT
ATGGCGTCATCATTGGCTGGAATCGAAATATCTGCAATATCTGGGTCACAATTTGTATCGATTAA
ACAAACTGTTGGAATTCCCAAAGTAACACATTCTCGAAGAGCTGTATATTCTTCTTGCTGATCGA
CGATGATTACAATATCAGGCAACCCCGTCATATATTTGATCCCACCTAGATATGTTTGCAAGTGA
GATAATTGTCTCTTCAGCATTGCCGCATCTCGTTTCGGAAGACGGTTGAGTCTTCCCGTCTTTTG
TTCCGCTCTCAAGTCCCTGAACTTATGAAGTCTTGTTTTTGTAGTGGACCAGTTCGTTGACATAC
CACCGAGCCATTTTTTATTAACATAATGACATCGCGCCTTTATTGCAGCCGATGCTACTGAATCA
GCTGCTTTATTTTTTGTACCAACGATTAAGAATTGTTTTCCCCTA
Found at i:703980 original size:12 final size:12
Alignment explanation
Indices: 703963--703987 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
703953 GGAGTCTTGT
703963 ATAGAATATCAA
1 ATAGAATATCAA
703975 ATAGAATATCAA
1 ATAGAATATCAA
703987 A
1 A
703988 AAAGTGATCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.08, G:0.08, T:0.24
Consensus pattern (12 bp):
ATAGAATATCAA
Left flanking sequence: Indices 703463 -- 703962
TCCAAAAATAATTGAAATTCAATTTCTTGATCCGTATCTTCAATTTTTGGAAACTTATCAAGTTC
TTCCGTCAATCCCTGATCAATGAATCTACAAAATCCCTCAAATTGTATCTGACTAAACCCAGGTA
TTGTAGACATTCCCTCATTTCCATCCCGGAGCATTTTTAGTTTCCCATTTATCGAAAAAATCCCA
TTCATTTTCCAAGGCTCATTTCATTTTTAATCGAACCATATAGATTGGTCTAGTAATGAAATGAT
GTGGATTGATCTAACAATGATGGAATTAAATTCTATTTTGTTTACTGAATCACATAAAATTGGAT
CTAACTCCATATCATAGATGTAATGTATGAAATACGTATGAGCGGAGAAATAAAGAGAATTCTCT
ACTCAAAAAAACGGGAATTTGCAACAAAACAAATACAAAAGGAAATGAATTCAAATTCATAAAAC
ATTCCTAGAAACAAATTTATGACGTTTAGACTTATGGAGTCTTGT
Right flanking sequence: Indices 703988 -- 704487
AAAGTGATCAAATTTCTACCTATTACTATGATATTAGGATCCGCGGATTGGGTACTAGAAAAGTA
AACGGATTCGGGATTTGATCTGTTTTTTCTCTATGAATGAGATGAGATAAAGACAGAAAGAAGCC
TTATAGAGTTTACCTTTTTTAGCACTTAACTTTTCAGTGTTCAAAAAGTATTCGCATAGCACTTA
CCCCAGTTCCACTTGGGGTAACGCGGGTCCGTGCTATGCTATATCATAAATTCTATTTGATATTA
AAAAATAAAATATACTCAATGAAAAATTGAAGCATGCTAATTACCTTAATTCCTTGTGGGCATCT
CATATATAAATAAGATCCCAGATTAGGTATATCTGTGTAACAATGTAACAATTTTTGTTCTGGGG
TTTACATATATACATAATTGTTGTTATACTTGAAAAGGATTTATTATTGAAAATTCTTTATACTG
ATTTGTTGTGTACCAATTGCGTTTTCTTAGGCCATTAAGGAAACA
Found at i:705068 original size:17 final size:17
Alignment explanation
Indices: 705046--705080 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
705036 AATCACTGAT
705046 TCTTTAATTATATAGTA
1 TCTTTAATTATATAGTA
705063 TCTTTAATTATATAGTA
1 TCTTTAATTATATAGTA
705080 T
1 T
705081 ATAGTTGATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.34, C:0.06, G:0.06, T:0.54
Consensus pattern (17 bp):
TCTTTAATTATATAGTA
Left flanking sequence: Indices 704546 -- 705045
ATTTTGATTTGGACTGAATTTTTTATTGTGTGACTCCAATTTTTCTTTCAATAAAAAAGGAGAGA
AATTTAGGCGTTGTGTGTTTTGATATTTGTTTGAGATACTATAAAATTAAGAGAAGGGCCCGGCT
CCAATAAAAAAACCTCCCTTTTTTTTAGTTAAGGAATATTTCCATCTATTTTTATCGTTTTGGCG
GCATGGCCGAGTGGTAAGGCGGGGGACTGCAAATCCTTTTTCCCCAGTTCAAATCCGGGTGTCGC
CTGATCAATAAAAACCCGAAAGCCCTTTGCTTGCTGATATAATATAAGTCGCCGAATCCTTGCAT
AGCATAAGAAGAAAGGAAAGAGGAAAAGGGCTCTATAACTCCCGATACTTGCTTGATTTGAAGAA
GCTGGCGATTCAAAAAATGTCAATCCTTGCGCCTGGGATTCCAGGGAGGATTTTAGTATAGGAAG
GACTAGTCTATCAAGACTTACATAATGTACTGTCTAATCACTGAT
Right flanking sequence: Indices 705081 -- 705580
ATAGTTGATTGGGGACTTGGTAGTTGTTGAAAGGATGTTAGATGCTTTGTATACATACTCGCGAG
AATTTATGTGTGCTTAGATATTCAATATTCAATCAATATTGGATGAATAATTGGCTTCGTTCAGA
ATCTCTTTTTGACTCTGTGCCATTGATTCCATTATTATTAGTAATCAATAATGAAAGAGTTTCTT
CATATTCGGGGGCATAATTCACATGGATATAGTAAGTCTTGCTTGGGCTGCTTTAATGGTAGTCT
TTACATTTTCCCTTTCACTTGTAGTATGGGGAAGAAGTGGACTCTAGGTTAATTACTAATTGAGT
TGAGTAATCAAACTGTATTAATAGTTTCATAATCCTTCTGCAAAGCGTTTTTCAAATATCTTCAT
TTTTTAATTCTACTGGAATCCAGTTAGTTAAAGTAAAAAGTAATGTAATAGATGACGAATAATCT
TTCAATCAAACAAATATTTAAATTAAATGATTCCCATCTTCGTAT
Found at i:708303 original size:11 final size:10
Alignment explanation
Indices: 708271--708474 Score: 97
Period size: 9 Copynumber: 21.5 Consensus size: 10
708261 TTATAATTTA
708271 ATTA-TTAAT
1 ATTATTTAAT
708280 ATTATTTAAT
1 ATTATTTAAT
708290 ATTATTTAA-
1 ATTATTTAAT
708299 A-TA-TTAAT
1 ATTATTTAAT
708307 ATTATTT--T
1 ATTATTTAAT
708315 ATTA-TTAAT
1 ATTATTTAAT
*
708324 ATTATTTATT
1 ATTATTTAAT
708334 ATTA-TTAAT
1 ATTATTTAAT
*
708343 ATCATTATTAAT
1 ATTA-T-TTAAT
* *
708355 ATCA-AT-AT
1 ATTATTTAAT
708363 CATTA-TTAAT
1 -ATTATTTAAT
*
708373 ATCATTTAA-
1 ATTATTTAAT
*
708382 ATCATTTAAAAT
1 ATTATTT--AAT
708394 ATTATTTAA-
1 ATTATTTAAT
708403 ATTATTT-AT
1 ATTATTTAAT
708412 A-T-TTT--T
1 ATTATTTAAT
*
708418 ATTA-TTAAG
1 ATTATTTAAT
* *
708427 ATAATTTATT
1 ATTATTTAAT
708437 ATTAATGTTAAAAT
1 ATT-AT-TT--AAT
708451 ATTATTTAAT
1 ATTATTTAAT
*
708461 A-TATTTATT
1 ATTATTTAAT
708470 ATTAT
1 ATTAT
708475 ATTTATAATT
Statistics
Matches: 153, Mismatches: 15, Indels: 53
0.69 0.07 0.24
Matches are distributed among these distances:
6 2 0.01
7 12 0.08
8 12 0.08
9 53 0.35
10 44 0.29
11 4 0.03
12 19 0.12
13 2 0.01
14 5 0.03
ACGTcount: A:0.41, C:0.02, G:0.01, T:0.55
Consensus pattern (10 bp):
ATTATTTAAT
Left flanking sequence: Indices 707771 -- 708270
TAGATCCCACTCTATGTCCCTTGACAGAAAATAAAGAAATGAATTGATGGGGTCATCAGATACTA
TGTCGGGACTGACGGGGCTCGAACCCGCAGCTTCCGCCTTGACAGGGCGGTGCTCTGACCGATTG
AACTACAATCCCAGAGAAATAAGGTATACAGCATACATATTATTAATGATTTGATTAAGACTAGT
GTACAATTGTCGTATTGTAACTGTAACAGAGAAAGAAAGGAGTGATTGATAGATTAATATCTACA
TAGATATGGACTTTAGTGAGAACGACACGGATTACTCGAAATCCTATTGTCAAATCCGTGTTAAA
TCAATTGCTAAGAAATCTTTCAATGAAAAATATAAAATATTTAGATTCTTTAATTTTAATTCTTG
TCCTATATTTTCGGATTATGATATGAATCTAGATAATTCATAATTAAAAAAATGAAGAAAGAATA
TATGGCAACAAAAATGAAAAAAAAAAATAAATATTTTATAATTTA
Right flanking sequence: Indices 708475 -- 708974
ATTTATAATTAATTTTATTATTTTATTTATTAAAGTTATTATTTTATTTATTAAAGTTAAAGTAA
AGGATATAAAAATATTTAAGTAACGGATATAAAATGAATTCTTAGGCATGACAAATTTATTATTT
ATTATATTATTTATATTATCTAATCTCATGATGGATCGGTGAATTCTTGGGCCGAGCTGGATTTG
AACCAGCGTAGACATATTGCCAACGAATTTACAGTCCGTCCCCATTAACCACTCGGGCATCGACC
CAGGAAGAATCAAGTCTATAGACTTATTGATAATACATGATTATCCTCCTTTCCTAGTACCCTAC
CCCCAGGGGAAGTCGAATCCCCGCTGCCTCCTTGAAAGAGAGATGTCCTGAACCACTAGACGATG
GGGGCATATCTGTCCTGCTCAACCTACATCATACTGTATATACTCATAGTATGAATAGTTTTTTG
TAATTGTCAATATAATGTAATGGTGTGACTAAATCCGAATAAGTT
Found at i:708309 original size:6 final size:6
Alignment explanation
Indices: 708264--708374 Score: 72
Period size: 6 Copynumber: 19.0 Consensus size: 6
708254 AAATATTTTA
708264 TAAT-T TAATTAT TAATAT T-AT-T TAATAT T-AT-T TAAATAT TAATAT
1 TAATAT TAA-TAT TAATAT TAATAT TAATAT TAATAT T-AATAT TAATAT
* * * * * *
708309 T-ATTT TATTAT TAATAT TATTTAT TATTAT TAATAT CATTAT TAATAT
1 TAATAT TAATAT TAATAT TA-ATAT TAATAT TAATAT TAATAT TAATAT
* * *
708357 CAATAT CATTAT TAATAT
1 TAATAT TAATAT TAATAT
708375 CATTTAAATC
Statistics
Matches: 83, Mismatches: 14, Indels: 17
0.73 0.12 0.15
Matches are distributed among these distances:
4 4 0.05
5 13 0.16
6 55 0.66
7 11 0.13
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.56
Consensus pattern (6 bp):
TAATAT
Left flanking sequence: Indices 707764 -- 708263
CCCCAATTAGATCCCACTCTATGTCCCTTGACAGAAAATAAAGAAATGAATTGATGGGGTCATCA
GATACTATGTCGGGACTGACGGGGCTCGAACCCGCAGCTTCCGCCTTGACAGGGCGGTGCTCTGA
CCGATTGAACTACAATCCCAGAGAAATAAGGTATACAGCATACATATTATTAATGATTTGATTAA
GACTAGTGTACAATTGTCGTATTGTAACTGTAACAGAGAAAGAAAGGAGTGATTGATAGATTAAT
ATCTACATAGATATGGACTTTAGTGAGAACGACACGGATTACTCGAAATCCTATTGTCAAATCCG
TGTTAAATCAATTGCTAAGAAATCTTTCAATGAAAAATATAAAATATTTAGATTCTTTAATTTTA
ATTCTTGTCCTATATTTTCGGATTATGATATGAATCTAGATAATTCATAATTAAAAAAATGAAGA
AAGAATATATGGCAACAAAAATGAAAAAAAAAAATAAATATTTTA
Right flanking sequence: Indices 708375 -- 708874
CATTTAAATCATTTAAAATATTATTTAAATTATTTATATTTTTATTATTAAGATAATTTATTATT
AATGTTAAAATATTATTTAATATATTTATTATTATATTTATAATTAATTTTATTATTTTATTTAT
TAAAGTTATTATTTTATTTATTAAAGTTAAAGTAAAGGATATAAAAATATTTAAGTAACGGATAT
AAAATGAATTCTTAGGCATGACAAATTTATTATTTATTATATTATTTATATTATCTAATCTCATG
ATGGATCGGTGAATTCTTGGGCCGAGCTGGATTTGAACCAGCGTAGACATATTGCCAACGAATTT
ACAGTCCGTCCCCATTAACCACTCGGGCATCGACCCAGGAAGAATCAAGTCTATAGACTTATTGA
TAATACATGATTATCCTCCTTTCCTAGTACCCTACCCCCAGGGGAAGTCGAATCCCCGCTGCCTC
CTTGAAAGAGAGATGTCCTGAACCACTAGACGATGGGGGCATATC
Found at i:708340 original size:57 final size:56
Alignment explanation
Indices: 708264--708501 Score: 146
Period size: 57 Copynumber: 4.4 Consensus size: 56
708254 AAATATTTTA
* * **
708264 TAAT-TTAATTATTAATATTATTTAATATTATTTAAATATTAATATTATTTTATTAT
1 TAATATTATTTATTATTATTATAAAATATTATTTAAATATTAATA-TATTTTATTAT
* * *
708320 TAATATTATTTATTATTA-T-TAATATCATTA-TT-AATA-TCA-ATA--TCATTAT
1 TAATATTATTTATTATTATTATAAAAT-ATTATTTAAATATTAATATATTTTATTAT
* * * *
708369 TAATATCATTTA-AATCATT-TAAAATATTATTTAAATTATTTATAT-TTTTATTAT
1 TAATATTATTTATTATTATTATAAAATATTATTTAAA-TATTAATATATTTTATTAT
* * * *
708423 TAAGATAATTTATTATTAATGT-TAAAATATTATTTAATATATTTATTATTATATTTATAAT
1 TAATATTATTTATTATT-AT-TATAAAATATTATTTAA-ATA-TTAATA-TAT-TTTATTAT
*
708484 TAATTTTA-TTATT-TTATT
1 TAATATTATTTATTATTATT
708502 TATTAAAGTT
Statistics
Matches: 141, Mismatches: 23, Indels: 35
0.71 0.12 0.18
Matches are distributed among these distances:
48 7 0.05
49 25 0.18
50 2 0.01
51 4 0.03
52 3 0.02
53 4 0.03
54 20 0.14
55 7 0.05
56 11 0.08
57 30 0.21
58 7 0.05
59 3 0.02
60 6 0.04
61 12 0.09
ACGTcount: A:0.40, C:0.02, G:0.01, T:0.57
Consensus pattern (56 bp):
TAATATTATTTATTATTATTATAAAATATTATTTAAATATTAATATATTTTATTAT
Left flanking sequence: Indices 707764 -- 708263
CCCCAATTAGATCCCACTCTATGTCCCTTGACAGAAAATAAAGAAATGAATTGATGGGGTCATCA
GATACTATGTCGGGACTGACGGGGCTCGAACCCGCAGCTTCCGCCTTGACAGGGCGGTGCTCTGA
CCGATTGAACTACAATCCCAGAGAAATAAGGTATACAGCATACATATTATTAATGATTTGATTAA
GACTAGTGTACAATTGTCGTATTGTAACTGTAACAGAGAAAGAAAGGAGTGATTGATAGATTAAT
ATCTACATAGATATGGACTTTAGTGAGAACGACACGGATTACTCGAAATCCTATTGTCAAATCCG
TGTTAAATCAATTGCTAAGAAATCTTTCAATGAAAAATATAAAATATTTAGATTCTTTAATTTTA
ATTCTTGTCCTATATTTTCGGATTATGATATGAATCTAGATAATTCATAATTAAAAAAATGAAGA
AAGAATATATGGCAACAAAAATGAAAAAAAAAAATAAATATTTTA
Right flanking sequence: Indices 708502 -- 709001
TATTAAAGTTATTATTTTATTTATTAAAGTTAAAGTAAAGGATATAAAAATATTTAAGTAACGGA
TATAAAATGAATTCTTAGGCATGACAAATTTATTATTTATTATATTATTTATATTATCTAATCTC
ATGATGGATCGGTGAATTCTTGGGCCGAGCTGGATTTGAACCAGCGTAGACATATTGCCAACGAA
TTTACAGTCCGTCCCCATTAACCACTCGGGCATCGACCCAGGAAGAATCAAGTCTATAGACTTAT
TGATAATACATGATTATCCTCCTTTCCTAGTACCCTACCCCCAGGGGAAGTCGAATCCCCGCTGC
CTCCTTGAAAGAGAGATGTCCTGAACCACTAGACGATGGGGGCATATCTGTCCTGCTCAACCTAC
ATCATACTGTATATACTCATAGTATGAATAGTTTTTTGTAATTGTCAATATAATGTAATGGTGTG
ACTAAATCCGAATAAGTTTTCCACCTTTCCTTTCGCGATTCCGAT
Found at i:708370 original size:3 final size:3
Alignment explanation
Indices: 708271--708352 Score: 60
Period size: 3 Copynumber: 27.3 Consensus size: 3
708261 TTATAATTTA
* * * * *
708271 ATT ATT AAT ATT ATTT AAT ATT ATT -TA AAT ATT AAT ATT ATT -TT
1 ATT ATT ATT ATT A-TT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* * *
708315 ATT ATT AAT ATT ATTT ATT ATT ATT AAT ATC ATT ATT A
1 ATT ATT ATT ATT A-TT ATT ATT ATT ATT ATT ATT ATT A
708353 ATATCAATAT
Statistics
Matches: 59, Mismatches: 16, Indels: 8
0.71 0.19 0.10
Matches are distributed among these distances:
2 3 0.05
3 50 0.85
4 6 0.10
ACGTcount: A:0.40, C:0.01, G:0.00, T:0.59
Consensus pattern (3 bp):
ATT
Left flanking sequence: Indices 707771 -- 708270
TAGATCCCACTCTATGTCCCTTGACAGAAAATAAAGAAATGAATTGATGGGGTCATCAGATACTA
TGTCGGGACTGACGGGGCTCGAACCCGCAGCTTCCGCCTTGACAGGGCGGTGCTCTGACCGATTG
AACTACAATCCCAGAGAAATAAGGTATACAGCATACATATTATTAATGATTTGATTAAGACTAGT
GTACAATTGTCGTATTGTAACTGTAACAGAGAAAGAAAGGAGTGATTGATAGATTAATATCTACA
TAGATATGGACTTTAGTGAGAACGACACGGATTACTCGAAATCCTATTGTCAAATCCGTGTTAAA
TCAATTGCTAAGAAATCTTTCAATGAAAAATATAAAATATTTAGATTCTTTAATTTTAATTCTTG
TCCTATATTTTCGGATTATGATATGAATCTAGATAATTCATAATTAAAAAAATGAAGAAAGAATA
TATGGCAACAAAAATGAAAAAAAAAAATAAATATTTTATAATTTA
Right flanking sequence: Indices 708353 -- 708852
ATATCAATATCATTATTAATATCATTTAAATCATTTAAAATATTATTTAAATTATTTATATTTTT
ATTATTAAGATAATTTATTATTAATGTTAAAATATTATTTAATATATTTATTATTATATTTATAA
TTAATTTTATTATTTTATTTATTAAAGTTATTATTTTATTTATTAAAGTTAAAGTAAAGGATATA
AAAATATTTAAGTAACGGATATAAAATGAATTCTTAGGCATGACAAATTTATTATTTATTATATT
ATTTATATTATCTAATCTCATGATGGATCGGTGAATTCTTGGGCCGAGCTGGATTTGAACCAGCG
TAGACATATTGCCAACGAATTTACAGTCCGTCCCCATTAACCACTCGGGCATCGACCCAGGAAGA
ATCAAGTCTATAGACTTATTGATAATACATGATTATCCTCCTTTCCTAGTACCCTACCCCCAGGG
GAAGTCGAATCCCCGCTGCCTCCTTGAAAGAGAGATGTCCTGAAC
Found at i:708385 original size:21 final size:21
Alignment explanation
Indices: 708338--708404 Score: 61
Period size: 21 Copynumber: 3.3 Consensus size: 21
708328 TTTATTATTA
708338 TTAATATCATTATTAATATCA-
1 TTAA-ATCATTATTAATATCAT
*
708359 --ATATCATTATTAATATCAT
1 TTAAATCATTATTAATATCAT
* *
708378 TTAAATCATT-TAAAATATTAT
1 TTAAATCATTAT-TAATATCAT
708399 TTAAAT
1 TTAAAT
708405 TATTTATATT
Statistics
Matches: 38, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
18 16 0.42
19 1 0.03
20 1 0.03
21 20 0.53
ACGTcount: A:0.45, C:0.07, G:0.00, T:0.48
Consensus pattern (21 bp):
TTAAATCATTATTAATATCAT
Left flanking sequence: Indices 707838 -- 708337
TCGGGACTGACGGGGCTCGAACCCGCAGCTTCCGCCTTGACAGGGCGGTGCTCTGACCGATTGAA
CTACAATCCCAGAGAAATAAGGTATACAGCATACATATTATTAATGATTTGATTAAGACTAGTGT
ACAATTGTCGTATTGTAACTGTAACAGAGAAAGAAAGGAGTGATTGATAGATTAATATCTACATA
GATATGGACTTTAGTGAGAACGACACGGATTACTCGAAATCCTATTGTCAAATCCGTGTTAAATC
AATTGCTAAGAAATCTTTCAATGAAAAATATAAAATATTTAGATTCTTTAATTTTAATTCTTGTC
CTATATTTTCGGATTATGATATGAATCTAGATAATTCATAATTAAAAAAATGAAGAAAGAATATA
TGGCAACAAAAATGAAAAAAAAAAATAAATATTTTATAATTTAATTATTAATATTATTTAATATT
ATTTAAATATTAATATTATTTTATTATTAATATTATTTATTATTA
Right flanking sequence: Indices 708405 -- 708904
TATTTATATTTTTATTATTAAGATAATTTATTATTAATGTTAAAATATTATTTAATATATTTATT
ATTATATTTATAATTAATTTTATTATTTTATTTATTAAAGTTATTATTTTATTTATTAAAGTTAA
AGTAAAGGATATAAAAATATTTAAGTAACGGATATAAAATGAATTCTTAGGCATGACAAATTTAT
TATTTATTATATTATTTATATTATCTAATCTCATGATGGATCGGTGAATTCTTGGGCCGAGCTGG
ATTTGAACCAGCGTAGACATATTGCCAACGAATTTACAGTCCGTCCCCATTAACCACTCGGGCAT
CGACCCAGGAAGAATCAAGTCTATAGACTTATTGATAATACATGATTATCCTCCTTTCCTAGTAC
CCTACCCCCAGGGGAAGTCGAATCCCCGCTGCCTCCTTGAAAGAGAGATGTCCTGAACCACTAGA
CGATGGGGGCATATCTGTCCTGCTCAACCTACATCATACTGTATA
Found at i:708420 original size:21 final size:21
Alignment explanation
Indices: 708370--708410 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
708360 TATCATTATT
*
708370 AATATCATTTAAATCATTTAA
1 AATATTATTTAAATCATTTAA
*
708391 AATATTATTTAAATTATTTA
1 AATATTATTTAAATCATTTA
708411 TATTTTTATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.46, C:0.05, G:0.00, T:0.49
Consensus pattern (21 bp):
AATATTATTTAAATCATTTAA
Left flanking sequence: Indices 707870 -- 708369
CGCCTTGACAGGGCGGTGCTCTGACCGATTGAACTACAATCCCAGAGAAATAAGGTATACAGCAT
ACATATTATTAATGATTTGATTAAGACTAGTGTACAATTGTCGTATTGTAACTGTAACAGAGAAA
GAAAGGAGTGATTGATAGATTAATATCTACATAGATATGGACTTTAGTGAGAACGACACGGATTA
CTCGAAATCCTATTGTCAAATCCGTGTTAAATCAATTGCTAAGAAATCTTTCAATGAAAAATATA
AAATATTTAGATTCTTTAATTTTAATTCTTGTCCTATATTTTCGGATTATGATATGAATCTAGAT
AATTCATAATTAAAAAAATGAAGAAAGAATATATGGCAACAAAAATGAAAAAAAAAAATAAATAT
TTTATAATTTAATTATTAATATTATTTAATATTATTTAAATATTAATATTATTTTATTATTAATA
TTATTTATTATTATTAATATCATTATTAATATCAATATCATTATT
Right flanking sequence: Indices 708411 -- 708910
TATTTTTATTATTAAGATAATTTATTATTAATGTTAAAATATTATTTAATATATTTATTATTATA
TTTATAATTAATTTTATTATTTTATTTATTAAAGTTATTATTTTATTTATTAAAGTTAAAGTAAA
GGATATAAAAATATTTAAGTAACGGATATAAAATGAATTCTTAGGCATGACAAATTTATTATTTA
TTATATTATTTATATTATCTAATCTCATGATGGATCGGTGAATTCTTGGGCCGAGCTGGATTTGA
ACCAGCGTAGACATATTGCCAACGAATTTACAGTCCGTCCCCATTAACCACTCGGGCATCGACCC
AGGAAGAATCAAGTCTATAGACTTATTGATAATACATGATTATCCTCCTTTCCTAGTACCCTACC
CCCAGGGGAAGTCGAATCCCCGCTGCCTCCTTGAAAGAGAGATGTCCTGAACCACTAGACGATGG
GGGCATATCTGTCCTGCTCAACCTACATCATACTGTATATACTCA
Found at i:708436 original size:16 final size:16
Alignment explanation
Indices: 708415--708473 Score: 57
Period size: 16 Copynumber: 3.6 Consensus size: 16
708405 TATTTATATT
708415 TTTATTATTAAGATAA
1 TTTATTATTAAGATAA
*
708431 TTTATTATTAATGTTAA
1 TTTATTATTAA-GATAA
** *
708448 AATATTATTTA-ATATA
1 TTTATTATTAAGATA-A
708464 TTTATTATTA
1 TTTATTATTA
708474 TATTTATAAT
Statistics
Matches: 33, Mismatches: 8, Indels: 4
0.73 0.18 0.09
Matches are distributed among these distances:
15 2 0.06
16 19 0.58
17 12 0.36
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.56
Consensus pattern (16 bp):
TTTATTATTAAGATAA
Left flanking sequence: Indices 707915 -- 708414
AGAAATAAGGTATACAGCATACATATTATTAATGATTTGATTAAGACTAGTGTACAATTGTCGTA
TTGTAACTGTAACAGAGAAAGAAAGGAGTGATTGATAGATTAATATCTACATAGATATGGACTTT
AGTGAGAACGACACGGATTACTCGAAATCCTATTGTCAAATCCGTGTTAAATCAATTGCTAAGAA
ATCTTTCAATGAAAAATATAAAATATTTAGATTCTTTAATTTTAATTCTTGTCCTATATTTTCGG
ATTATGATATGAATCTAGATAATTCATAATTAAAAAAATGAAGAAAGAATATATGGCAACAAAAA
TGAAAAAAAAAAATAAATATTTTATAATTTAATTATTAATATTATTTAATATTATTTAAATATTA
ATATTATTTTATTATTAATATTATTTATTATTATTAATATCATTATTAATATCAATATCATTATT
AATATCATTTAAATCATTTAAAATATTATTTAAATTATTTATATT
Right flanking sequence: Indices 708474 -- 708973
TATTTATAATTAATTTTATTATTTTATTTATTAAAGTTATTATTTTATTTATTAAAGTTAAAGTA
AAGGATATAAAAATATTTAAGTAACGGATATAAAATGAATTCTTAGGCATGACAAATTTATTATT
TATTATATTATTTATATTATCTAATCTCATGATGGATCGGTGAATTCTTGGGCCGAGCTGGATTT
GAACCAGCGTAGACATATTGCCAACGAATTTACAGTCCGTCCCCATTAACCACTCGGGCATCGAC
CCAGGAAGAATCAAGTCTATAGACTTATTGATAATACATGATTATCCTCCTTTCCTAGTACCCTA
CCCCCAGGGGAAGTCGAATCCCCGCTGCCTCCTTGAAAGAGAGATGTCCTGAACCACTAGACGAT
GGGGGCATATCTGTCCTGCTCAACCTACATCATACTGTATATACTCATAGTATGAATAGTTTTTT
GTAATTGTCAATATAATGTAATGGTGTGACTAAATCCGAATAAGT
Found at i:708475 original size:12 final size:12
Alignment explanation
Indices: 708460--708527 Score: 63
Period size: 12 Copynumber: 5.9 Consensus size: 12
708450 TATTATTTAA
708460 TATATTTATTAT
1 TATATTTATTAT
*
708472 TATATTTATAAT
1 TATATTTATTAT
708484 TA-A-TT-TTAT
1 TATATTTATTAT
708493 TAT-TTTATTTAT
1 TATATTTA-TTAT
* *
708505 TAAAGTTATTAT
1 TATATTTATTAT
*
708517 TTTATTTATTA
1 TATATTTATTA
708528 AAGTTAAAGT
Statistics
Matches: 44, Mismatches: 7, Indels: 10
0.72 0.11 0.16
Matches are distributed among these distances:
9 5 0.11
10 4 0.09
11 1 0.02
12 31 0.70
13 3 0.07
ACGTcount: A:0.34, C:0.00, G:0.01, T:0.65
Consensus pattern (12 bp):
TATATTTATTAT
Left flanking sequence: Indices 707960 -- 708459
ACTAGTGTACAATTGTCGTATTGTAACTGTAACAGAGAAAGAAAGGAGTGATTGATAGATTAATA
TCTACATAGATATGGACTTTAGTGAGAACGACACGGATTACTCGAAATCCTATTGTCAAATCCGT
GTTAAATCAATTGCTAAGAAATCTTTCAATGAAAAATATAAAATATTTAGATTCTTTAATTTTAA
TTCTTGTCCTATATTTTCGGATTATGATATGAATCTAGATAATTCATAATTAAAAAAATGAAGAA
AGAATATATGGCAACAAAAATGAAAAAAAAAAATAAATATTTTATAATTTAATTATTAATATTAT
TTAATATTATTTAAATATTAATATTATTTTATTATTAATATTATTTATTATTATTAATATCATTA
TTAATATCAATATCATTATTAATATCATTTAAATCATTTAAAATATTATTTAAATTATTTATATT
TTTATTATTAAGATAATTTATTATTAATGTTAAAATATTATTTAA
Right flanking sequence: Indices 708528 -- 709027
AAGTTAAAGTAAAGGATATAAAAATATTTAAGTAACGGATATAAAATGAATTCTTAGGCATGACA
AATTTATTATTTATTATATTATTTATATTATCTAATCTCATGATGGATCGGTGAATTCTTGGGCC
GAGCTGGATTTGAACCAGCGTAGACATATTGCCAACGAATTTACAGTCCGTCCCCATTAACCACT
CGGGCATCGACCCAGGAAGAATCAAGTCTATAGACTTATTGATAATACATGATTATCCTCCTTTC
CTAGTACCCTACCCCCAGGGGAAGTCGAATCCCCGCTGCCTCCTTGAAAGAGAGATGTCCTGAAC
CACTAGACGATGGGGGCATATCTGTCCTGCTCAACCTACATCATACTGTATATACTCATAGTATG
AATAGTTTTTTGTAATTGTCAATATAATGTAATGGTGTGACTAAATCCGAATAAGTTTTCCACCT
TTCCTTTCGCGATTCCGATAGAATTTTTTTCATTCATGGTTCATG
Found at i:708476 original size:24 final size:24
Alignment explanation
Indices: 708449--708522 Score: 66
Period size: 24 Copynumber: 3.2 Consensus size: 24
708439 TAATGTTAAA
*
708449 ATATTATTTAATATATTTATTATT
1 ATATTATTTAATATAATTATTATT
*
708473 ATATT-TATAAT-TAATT-TTATT
1 ATATTATTTAATATAATTATTATT
* *
708494 ATTTTATTTATTA-AAGTTATTATT
1 ATATTATTTAATATAA-TTATTATT
*
708518 TTATT
1 ATATT
708523 TATTAAAGTT
Statistics
Matches: 39, Mismatches: 7, Indels: 8
0.72 0.13 0.15
Matches are distributed among these distances:
21 9 0.23
22 10 0.26
23 7 0.18
24 13 0.33
ACGTcount: A:0.35, C:0.00, G:0.01, T:0.64
Consensus pattern (24 bp):
ATATTATTTAATATAATTATTATT
Left flanking sequence: Indices 707949 -- 708448
ATTTGATTAAGACTAGTGTACAATTGTCGTATTGTAACTGTAACAGAGAAAGAAAGGAGTGATTG
ATAGATTAATATCTACATAGATATGGACTTTAGTGAGAACGACACGGATTACTCGAAATCCTATT
GTCAAATCCGTGTTAAATCAATTGCTAAGAAATCTTTCAATGAAAAATATAAAATATTTAGATTC
TTTAATTTTAATTCTTGTCCTATATTTTCGGATTATGATATGAATCTAGATAATTCATAATTAAA
AAAATGAAGAAAGAATATATGGCAACAAAAATGAAAAAAAAAAATAAATATTTTATAATTTAATT
ATTAATATTATTTAATATTATTTAAATATTAATATTATTTTATTATTAATATTATTTATTATTAT
TAATATCATTATTAATATCAATATCATTATTAATATCATTTAAATCATTTAAAATATTATTTAAA
TTATTTATATTTTTATTATTAAGATAATTTATTATTAATGTTAAA
Right flanking sequence: Indices 708523 -- 709022
TATTAAAGTTAAAGTAAAGGATATAAAAATATTTAAGTAACGGATATAAAATGAATTCTTAGGCA
TGACAAATTTATTATTTATTATATTATTTATATTATCTAATCTCATGATGGATCGGTGAATTCTT
GGGCCGAGCTGGATTTGAACCAGCGTAGACATATTGCCAACGAATTTACAGTCCGTCCCCATTAA
CCACTCGGGCATCGACCCAGGAAGAATCAAGTCTATAGACTTATTGATAATACATGATTATCCTC
CTTTCCTAGTACCCTACCCCCAGGGGAAGTCGAATCCCCGCTGCCTCCTTGAAAGAGAGATGTCC
TGAACCACTAGACGATGGGGGCATATCTGTCCTGCTCAACCTACATCATACTGTATATACTCATA
GTATGAATAGTTTTTTGTAATTGTCAATATAATGTAATGGTGTGACTAAATCCGAATAAGTTTTC
CACCTTTCCTTTCGCGATTCCGATAGAATTTTTTTCATTCATGGT
Found at i:708479 original size:21 final size:21
Alignment explanation
Indices: 708452--708524 Score: 67
Period size: 21 Copynumber: 3.3 Consensus size: 21
708442 TGTTAAAATA
708452 TTATTTAATATATTTATTATT
1 TTATTTAATATATTTATTATT
*
708473 ATATTT-ATAATTAATTTTATTATT
1 TTATTTAAT-A-T-A-TTTATTATT
* * *
708497 TTATTTATTAAAGTTATTATT
1 TTATTTAATATATTTATTATT
708518 TTATTTA
1 TTATTTA
708525 TTAAAGTTAA
Statistics
Matches: 42, Mismatches: 5, Indels: 10
0.74 0.09 0.18
Matches are distributed among these distances:
20 2 0.05
21 21 0.50
22 2 0.05
23 1 0.02
24 15 0.36
25 1 0.02
ACGTcount: A:0.34, C:0.00, G:0.01, T:0.64
Consensus pattern (21 bp):
TTATTTAATATATTTATTATT
Left flanking sequence: Indices 707952 -- 708451
TGATTAAGACTAGTGTACAATTGTCGTATTGTAACTGTAACAGAGAAAGAAAGGAGTGATTGATA
GATTAATATCTACATAGATATGGACTTTAGTGAGAACGACACGGATTACTCGAAATCCTATTGTC
AAATCCGTGTTAAATCAATTGCTAAGAAATCTTTCAATGAAAAATATAAAATATTTAGATTCTTT
AATTTTAATTCTTGTCCTATATTTTCGGATTATGATATGAATCTAGATAATTCATAATTAAAAAA
ATGAAGAAAGAATATATGGCAACAAAAATGAAAAAAAAAAATAAATATTTTATAATTTAATTATT
AATATTATTTAATATTATTTAAATATTAATATTATTTTATTATTAATATTATTTATTATTATTAA
TATCATTATTAATATCAATATCATTATTAATATCATTTAAATCATTTAAAATATTATTTAAATTA
TTTATATTTTTATTATTAAGATAATTTATTATTAATGTTAAAATA
Right flanking sequence: Indices 708525 -- 709024
TTAAAGTTAAAGTAAAGGATATAAAAATATTTAAGTAACGGATATAAAATGAATTCTTAGGCATG
ACAAATTTATTATTTATTATATTATTTATATTATCTAATCTCATGATGGATCGGTGAATTCTTGG
GCCGAGCTGGATTTGAACCAGCGTAGACATATTGCCAACGAATTTACAGTCCGTCCCCATTAACC
ACTCGGGCATCGACCCAGGAAGAATCAAGTCTATAGACTTATTGATAATACATGATTATCCTCCT
TTCCTAGTACCCTACCCCCAGGGGAAGTCGAATCCCCGCTGCCTCCTTGAAAGAGAGATGTCCTG
AACCACTAGACGATGGGGGCATATCTGTCCTGCTCAACCTACATCATACTGTATATACTCATAGT
ATGAATAGTTTTTTGTAATTGTCAATATAATGTAATGGTGTGACTAAATCCGAATAAGTTTTCCA
CCTTTCCTTTCGCGATTCCGATAGAATTTTTTTCATTCATGGTTC
Found at i:708479 original size:45 final size:45
Alignment explanation
Indices: 708403--708527 Score: 117
Period size: 45 Copynumber: 2.7 Consensus size: 45
708393 TATTATTTAA
*
708403 ATTATTT-ATATTTTTATTATTAAGATAATTTATTATTAATGTTAAAAT
1 ATTATTTAATATATTTATTATT---AT-ATTTATTATTAATGTTAAAAT
* * **
708451 ATTATTTAATATATTTATTATTATATTTATAATTAATTTTATTAT
1 ATTATTTAATATATTTATTATTATATTTATTATTAATGTTAAAAT
* * * * *
708496 TTTATTTATTAAAGTTATTATTTTATTTATTA
1 ATTATTTAATATATTTATTATTATATTTATTA
708528 AAGTTAAAGT
Statistics
Matches: 65, Mismatches: 11, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
45 43 0.66
46 2 0.03
48 7 0.11
49 13 0.20
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (45 bp):
ATTATTTAATATATTTATTATTATATTTATTATTAATGTTAAAAT
Left flanking sequence: Indices 707903 -- 708402
CTACAATCCCAGAGAAATAAGGTATACAGCATACATATTATTAATGATTTGATTAAGACTAGTGT
ACAATTGTCGTATTGTAACTGTAACAGAGAAAGAAAGGAGTGATTGATAGATTAATATCTACATA
GATATGGACTTTAGTGAGAACGACACGGATTACTCGAAATCCTATTGTCAAATCCGTGTTAAATC
AATTGCTAAGAAATCTTTCAATGAAAAATATAAAATATTTAGATTCTTTAATTTTAATTCTTGTC
CTATATTTTCGGATTATGATATGAATCTAGATAATTCATAATTAAAAAAATGAAGAAAGAATATA
TGGCAACAAAAATGAAAAAAAAAAATAAATATTTTATAATTTAATTATTAATATTATTTAATATT
ATTTAAATATTAATATTATTTTATTATTAATATTATTTATTATTATTAATATCATTATTAATATC
AATATCATTATTAATATCATTTAAATCATTTAAAATATTATTTAA
Right flanking sequence: Indices 708528 -- 709027
AAGTTAAAGTAAAGGATATAAAAATATTTAAGTAACGGATATAAAATGAATTCTTAGGCATGACA
AATTTATTATTTATTATATTATTTATATTATCTAATCTCATGATGGATCGGTGAATTCTTGGGCC
GAGCTGGATTTGAACCAGCGTAGACATATTGCCAACGAATTTACAGTCCGTCCCCATTAACCACT
CGGGCATCGACCCAGGAAGAATCAAGTCTATAGACTTATTGATAATACATGATTATCCTCCTTTC
CTAGTACCCTACCCCCAGGGGAAGTCGAATCCCCGCTGCCTCCTTGAAAGAGAGATGTCCTGAAC
CACTAGACGATGGGGGCATATCTGTCCTGCTCAACCTACATCATACTGTATATACTCATAGTATG
AATAGTTTTTTGTAATTGTCAATATAATGTAATGGTGTGACTAAATCCGAATAAGTTTTCCACCT
TTCCTTTCGCGATTCCGATAGAATTTTTTTCATTCATGGTTCATG
Found at i:708525 original size:21 final size:21
Alignment explanation
Indices: 708489--708533 Score: 90
Period size: 21 Copynumber: 2.1 Consensus size: 21
708479 ATAATTAATT
708489 TTATTATTTTATTTATTAAAG
1 TTATTATTTTATTTATTAAAG
708510 TTATTATTTTATTTATTAAAG
1 TTATTATTTTATTTATTAAAG
708531 TTA
1 TTA
708534 AAGTAAAGGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.04, T:0.62
Consensus pattern (21 bp):
TTATTATTTTATTTATTAAAG
Left flanking sequence: Indices 707989 -- 708488
TAACAGAGAAAGAAAGGAGTGATTGATAGATTAATATCTACATAGATATGGACTTTAGTGAGAAC
GACACGGATTACTCGAAATCCTATTGTCAAATCCGTGTTAAATCAATTGCTAAGAAATCTTTCAA
TGAAAAATATAAAATATTTAGATTCTTTAATTTTAATTCTTGTCCTATATTTTCGGATTATGATA
TGAATCTAGATAATTCATAATTAAAAAAATGAAGAAAGAATATATGGCAACAAAAATGAAAAAAA
AAAATAAATATTTTATAATTTAATTATTAATATTATTTAATATTATTTAAATATTAATATTATTT
TATTATTAATATTATTTATTATTATTAATATCATTATTAATATCAATATCATTATTAATATCATT
TAAATCATTTAAAATATTATTTAAATTATTTATATTTTTATTATTAAGATAATTTATTATTAATG
TTAAAATATTATTTAATATATTTATTATTATATTTATAATTAATT
Right flanking sequence: Indices 708534 -- 709033
AAGTAAAGGATATAAAAATATTTAAGTAACGGATATAAAATGAATTCTTAGGCATGACAAATTTA
TTATTTATTATATTATTTATATTATCTAATCTCATGATGGATCGGTGAATTCTTGGGCCGAGCTG
GATTTGAACCAGCGTAGACATATTGCCAACGAATTTACAGTCCGTCCCCATTAACCACTCGGGCA
TCGACCCAGGAAGAATCAAGTCTATAGACTTATTGATAATACATGATTATCCTCCTTTCCTAGTA
CCCTACCCCCAGGGGAAGTCGAATCCCCGCTGCCTCCTTGAAAGAGAGATGTCCTGAACCACTAG
ACGATGGGGGCATATCTGTCCTGCTCAACCTACATCATACTGTATATACTCATAGTATGAATAGT
TTTTTGTAATTGTCAATATAATGTAATGGTGTGACTAAATCCGAATAAGTTTTCCACCTTTCCTT
TCGCGATTCCGATAGAATTTTTTTCATTCATGGTTCATGAATGAT
Found at i:709752 original size:16 final size:18
Alignment explanation
Indices: 709716--709751 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
709706 TAGAATGAGT
709716 TAATTAAATGATTATATA
1 TAATTAAATGATTATATA
709734 TAATTAAATGATTATATA
1 TAATTAAATGATTATATA
709752 AAAATATAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.50, C:0.00, G:0.06, T:0.44
Consensus pattern (18 bp):
TAATTAAATGATTATATA
Left flanking sequence: Indices 709216 -- 709715
AAATTAACAAACGATAGAAAGTTTCGTTTTTTTCTAAGAGCAGAGCTTGGATTTTGGATTTCAGG
TACAAGCTGAATCTTTTCATTCCATACATTACATCATTTGATCACATATCAAATATCTTGGATCT
ATTTCAATTTGTGTATTAATCAAGCGAATCTTGTTGTGATAGGGGTCAATAAAAGAAAATAAAAA
AGAATTAGGTTTTAGCCTAGACTGACTAAAAAAAAAAGATATTCCAGAATGAGACACCGTGAGCC
TACTGTATGTACCTATGTAATGTAATATGTAGGTATATAATATATGTATATGTCTTCACATTGTC
TCATTTAGGAATGGAATAAAATGGGCCCTTTTAACTCAGCGGTAGAGTAACGCCATGGTAAGGCG
TAAGTCATCGGTTCAAATCCGATAAGGGGCTTTTTCCACAAAACTCTAGTTTCAATCTTCATTTT
TTAGTGGATAAGATAATCGGGATATTTTTTTTTATTAGAATGAGT
Right flanking sequence: Indices 709752 -- 710251
AAAATATAATGAGATAGTTATAGTATAATGATTATAAAGTTGAACATTTGTTCATGATAATGATA
AATCACCCCACTTATTGGTAGGACAACTATGTCACTACAGGCTATATTCCTACTCAATTCAAGTT
TCATTATTCCATATTTTTGGTTCGAGGACATAGATATTCTACCTACTCAACCCTAATTATGAATC
GCCAAATATTCCTACTTTTCCGTTATTTATTCCAATCAAATCCATCATAAATAAATATATATAAG
AAATAAAAAAAGGTAAGTGGACCTGACCCATTGAATCATGACTATATCAGCTATTCTGATATTCA
AATTTGATAGAGATAGAATTGTAGCCTTGGAATTTTTTTTTCATTTCCGTTAGACTACGTCGCAA
GAATTTTGAATTTGTCGATATTTCCGATTAAATCTTTTTTGGATCCTTCATAGGAATAAATTAGT
ATTCCGTTCCTCCACGCGAAACCTTTATTCCGAGTCACAAAAAAA
Found at i:714444 original size:23 final size:25
Alignment explanation
Indices: 714417--714464 Score: 82
Period size: 23 Copynumber: 2.0 Consensus size: 25
714407 CATAGAATCT
714417 ATTTTATATTGT-TAT-TGTATATA
1 ATTTTATATTGTGTATATGTATATA
714440 ATTTTATATTGTGTATATGTATATA
1 ATTTTATATTGTGTATATGTATATA
714465 TATTAATTAG
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
23 12 0.52
24 3 0.13
25 8 0.35
ACGTcount: A:0.31, C:0.00, G:0.10, T:0.58
Consensus pattern (25 bp):
ATTTTATATTGTGTATATGTATATA
Left flanking sequence: Indices 713917 -- 714416
TATTACAATACAATTTTTTTTTTGATGAGAAAGGGATCAAATGGTATAGTTTATTTATTGGTAGC
TTGGAGTATTAGAAGTATGACTATTGCTTTTCAATTGGCTGTTTTTGCATTAATTGCTACTTCAT
CAATCTTATTGATTAGTGTACCTGTTGTATTTGCTTCTTCTGACGGTTGGTCAAGTAACAAAAAT
GTTGTATTTTCCGGTACATCATTATGGATTGGATTAGTCTTTCTAGTAGCTATCCTTAATTCTCT
CATCTCTTGAACCAATTCAGTATTTTTTTTCTAGATCAAAAAAGAAATGACCCCCTAGAATCCCT
TCGGGTTGTGACACGCATTAAAATTCCATAACATAATATAATAATAATATAAAATTAAAATGAAT
CCCGAAAAGGAAAATAAAGAAAAAAATTGGGGGGTCAAAGTCCAACTTCTTGAATAAAAAAGAAT
TTTATTGTTATATTATATGTTATATGTTATAATAACATAGAATCT
Right flanking sequence: Indices 714465 -- 714964
TATTAATTAGACAATTTAGACAATTGGAATCGTTCTATAGTATCCGTCCCCGCACAATAATGATC
CAGACACGCTGATATCATATATGTGGAGACATATGCGGGCTTATCAGGAACGAAAAAACGCGGAT
ATGGTCGAATGGTAAAATTTCTCTTTGCCAAGGAGAAGATGCGGGTTCGATTCCCGCTATCCGCC
TATAGTGAATTAATGGAATAGGATAAATGATTCGGTAGAGTTTACTACGATAGTGTAGTGGTTCT
ATCTTCTCTTCCTACTTTCCGATCCAAAAAGAGAAATAATAAAATAATAATTAAAATTAATTTTA
ATTTAATTAAAATAATAATTAATAATTAATTAATGGCTAGTTAACATTAACAGAGTCAGACCTAC
ATTTTTTTGACAAAAAATGATCGATATTACATTGCGGAGACAGGATTTGAACCCGTGACCTCAAG
GTTATGAGCCTTGCGAGCTACCAAGCTGCTCTACCCCGCGTTGAA
Found at i:714775 original size:11 final size:12
Alignment explanation
Indices: 714759--714811 Score: 51
Period size: 11 Copynumber: 4.8 Consensus size: 12
714749 CAAAAAGAGA
714759 AATAA-TAAAAT
1 AATAATTAAAAT
714770 AATAATTAAAAT
1 AATAATTAAAAT
**
714782 --TAATTTTAAT
1 AATAATTAAAAT
*
714792 -TTAATTAAAAT
1 AATAATTAAAAT
714803 AATAATTAA
1 AATAATTAA
714812 TAATTAATTA
Statistics
Matches: 34, Mismatches: 5, Indels: 5
0.77 0.11 0.11
Matches are distributed among these distances:
10 8 0.24
11 13 0.38
12 13 0.38
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (12 bp):
AATAATTAAAAT
Left flanking sequence: Indices 714259 -- 714758
TTAAAATTCCATAACATAATATAATAATAATATAAAATTAAAATGAATCCCGAAAAGGAAAATAA
AGAAAAAAATTGGGGGGTCAAAGTCCAACTTCTTGAATAAAAAAGAATTTTATTGTTATATTATA
TGTTATATGTTATAATAACATAGAATCTATTTTATATTGTTATTGTATATAATTTTATATTGTGT
ATATGTATATATATTAATTAGACAATTTAGACAATTGGAATCGTTCTATAGTATCCGTCCCCGCA
CAATAATGATCCAGACACGCTGATATCATATATGTGGAGACATATGCGGGCTTATCAGGAACGAA
AAAACGCGGATATGGTCGAATGGTAAAATTTCTCTTTGCCAAGGAGAAGATGCGGGTTCGATTCC
CGCTATCCGCCTATAGTGAATTAATGGAATAGGATAAATGATTCGGTAGAGTTTACTACGATAGT
GTAGTGGTTCTATCTTCTCTTCCTACTTTCCGATCCAAAAAGAGA
Right flanking sequence: Indices 714812 -- 715311
TAATTAATTAATGGCTAGTTAACATTAACAGAGTCAGACCTACATTTTTTTGACAAAAAATGATC
GATATTACATTGCGGAGACAGGATTTGAACCCGTGACCTCAAGGTTATGAGCCTTGCGAGCTACC
AAGCTGCTCTACCCCGCGTTGAAGAGAAGAGATGGGAACTAATGGACAACCGAGGATTGGATGTG
CCCCTCTACCATATCTATACAAATAGAATATCCCATTTATACAGAATGGTAAAGGGGGCTCTCTA
TGATCGATGATCATAGAGATCAATAGAAAGAGGAAGGTATAGTTTGATCCTTACCAACTTGATCT
TGTTGCACCCGGTAACAAACATGCATGAACCATTTCACGAAGTATGTGCCCGGATAACCCAAAGT
CTCGATAGTTAGCTCTCGGTCTTCCGGTCGAAAAACAACGTCGATGAAGACGTGTAGGTGCACTA
TTACGTGGTGGGGATTGTAATTTTCCATGAATTTCCCATTTATCA
Found at i:714785 original size:21 final size:19
Alignment explanation
Indices: 714758--714818 Score: 52
Period size: 21 Copynumber: 3.1 Consensus size: 19
714748 CCAAAAAGAG
714758 AAATAATAAAATAATAATTA
1 AAATAAT-AAATAATAATTA
* *
714778 AAATTAATTTTAAT-TTAATTA
1 AAA-TAA--TAAATAATAATTA
*
714799 AAATAATAATTAATAATTA
1 AAATAATAAATAATAATTA
714818 A
1 A
714819 TTAATGGCTA
Statistics
Matches: 32, Mismatches: 5, Indels: 9
0.70 0.11 0.20
Matches are distributed among these distances:
18 3 0.09
19 7 0.22
20 6 0.19
21 12 0.38
22 3 0.09
23 1 0.03
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (19 bp):
AAATAATAAATAATAATTA
Left flanking sequence: Indices 714258 -- 714757
ATTAAAATTCCATAACATAATATAATAATAATATAAAATTAAAATGAATCCCGAAAAGGAAAATA
AAGAAAAAAATTGGGGGGTCAAAGTCCAACTTCTTGAATAAAAAAGAATTTTATTGTTATATTAT
ATGTTATATGTTATAATAACATAGAATCTATTTTATATTGTTATTGTATATAATTTTATATTGTG
TATATGTATATATATTAATTAGACAATTTAGACAATTGGAATCGTTCTATAGTATCCGTCCCCGC
ACAATAATGATCCAGACACGCTGATATCATATATGTGGAGACATATGCGGGCTTATCAGGAACGA
AAAAACGCGGATATGGTCGAATGGTAAAATTTCTCTTTGCCAAGGAGAAGATGCGGGTTCGATTC
CCGCTATCCGCCTATAGTGAATTAATGGAATAGGATAAATGATTCGGTAGAGTTTACTACGATAG
TGTAGTGGTTCTATCTTCTCTTCCTACTTTCCGATCCAAAAAGAG
Right flanking sequence: Indices 714819 -- 715318
TTAATGGCTAGTTAACATTAACAGAGTCAGACCTACATTTTTTTGACAAAAAATGATCGATATTA
CATTGCGGAGACAGGATTTGAACCCGTGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAGCTGC
TCTACCCCGCGTTGAAGAGAAGAGATGGGAACTAATGGACAACCGAGGATTGGATGTGCCCCTCT
ACCATATCTATACAAATAGAATATCCCATTTATACAGAATGGTAAAGGGGGCTCTCTATGATCGA
TGATCATAGAGATCAATAGAAAGAGGAAGGTATAGTTTGATCCTTACCAACTTGATCTTGTTGCA
CCCGGTAACAAACATGCATGAACCATTTCACGAAGTATGTGCCCGGATAACCCAAAGTCTCGATA
GTTAGCTCTCGGTCTTCCGGTCGAAAAACAACGTCGATGAAGACGTGTAGGTGCACTATTACGTG
GTGGGGATTGTAATTTTCCATGAATTTCCCATTTATCATTCAACG
Found at i:714821 original size:11 final size:11
Alignment explanation
Indices: 714767--714823 Score: 50
Period size: 11 Copynumber: 5.3 Consensus size: 11
714757 GAAATAATAA
714767 AATAA-TAATT
1 AATAATTAATT
714777 AA-AATTAATT
1 AATAATTAATT
*
714787 -TTAATTTAATT
1 AATAA-TTAATT
714798 AA-AATAATAATT
1 AATAAT--TAATT
714810 AATAATTAATT
1 AATAATTAATT
714821 AAT
1 AAT
714824 GGCTAGTTAA
Statistics
Matches: 38, Mismatches: 2, Indels: 13
0.72 0.04 0.25
Matches are distributed among these distances:
9 2 0.05
10 10 0.26
11 16 0.42
12 7 0.18
13 3 0.08
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (11 bp):
AATAATTAATT
Left flanking sequence: Indices 714267 -- 714766
CCATAACATAATATAATAATAATATAAAATTAAAATGAATCCCGAAAAGGAAAATAAAGAAAAAA
ATTGGGGGGTCAAAGTCCAACTTCTTGAATAAAAAAGAATTTTATTGTTATATTATATGTTATAT
GTTATAATAACATAGAATCTATTTTATATTGTTATTGTATATAATTTTATATTGTGTATATGTAT
ATATATTAATTAGACAATTTAGACAATTGGAATCGTTCTATAGTATCCGTCCCCGCACAATAATG
ATCCAGACACGCTGATATCATATATGTGGAGACATATGCGGGCTTATCAGGAACGAAAAAACGCG
GATATGGTCGAATGGTAAAATTTCTCTTTGCCAAGGAGAAGATGCGGGTTCGATTCCCGCTATCC
GCCTATAGTGAATTAATGGAATAGGATAAATGATTCGGTAGAGTTTACTACGATAGTGTAGTGGT
TCTATCTTCTCTTCCTACTTTCCGATCCAAAAAGAGAAATAATAA
Right flanking sequence: Indices 714824 -- 715323
GGCTAGTTAACATTAACAGAGTCAGACCTACATTTTTTTGACAAAAAATGATCGATATTACATTG
CGGAGACAGGATTTGAACCCGTGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAGCTGCTCTAC
CCCGCGTTGAAGAGAAGAGATGGGAACTAATGGACAACCGAGGATTGGATGTGCCCCTCTACCAT
ATCTATACAAATAGAATATCCCATTTATACAGAATGGTAAAGGGGGCTCTCTATGATCGATGATC
ATAGAGATCAATAGAAAGAGGAAGGTATAGTTTGATCCTTACCAACTTGATCTTGTTGCACCCGG
TAACAAACATGCATGAACCATTTCACGAAGTATGTGCCCGGATAACCCAAAGTCTCGATAGTTAG
CTCTCGGTCTTCCGGTCGAAAAACAACGTCGATGAAGACGTGTAGGTGCACTATTACGTGGTGGG
GATTGTAATTTTCCATGAATTTCCCATTTATCATTCAACGACGAA
Found at i:722883 original size:32 final size:32
Alignment explanation
Indices: 722842--722905 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
722832 CCGCTTGTCA
722842 ATTCTTGGTGTAATACTCACTCGTAAATGATT
1 ATTCTTGGTGTAATACTCACTCGTAAATGATT
722874 ATTCTTGGTGTAATACTCACTCGTAAATGATT
1 ATTCTTGGTGTAATACTCACTCGTAAATGATT
722906 GGTGTCATAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.28, C:0.16, G:0.16, T:0.41
Consensus pattern (32 bp):
ATTCTTGGTGTAATACTCACTCGTAAATGATT
Left flanking sequence: Indices 722342 -- 722841
TCTTGGTAAGCTTGGGAGACTTAGAAAAGATAATTTCGTTGCGTGCGAAGCCCCTCTAGTTGCAG
TTCAAAGTGTTGCTTTCTCAGTCAAGTCGACAAAATCAATCTCCGGCTTTGATCAGATAGTTTTT
CTTTCTGCTCTGTTTTCGAGGGTCAAGCTCTATCTCCTCTGACTCCTTCACGTGCTCTAAAGGTA
AGTTCCGTAAAGCTGTTAGGAAACTAAGGTGCTGTGATAAAACCTCTTTCTGGTACGGGTCACGG
GAGGGAAAGTTCTGTAAGTGAATATCTCTCTCTGTTGTTAGCTGTTTTTAAGACTTTAGACCATG
TGTTTTGGTCAGCGAAAGCGTCCCTTCTTTTTCTTTTTCTTTCGTGGCCGAAAGAGGGGAAGGAA
GCGGAGGGGAGTTTCGGGAACAAAGCCCCCTTGAAAGTTAAGCCAGCCCTATAGTTTATTATATT
TTCGCTATATCAACATAGCCAACTAGAAAACGCATCCGCTTGTCA
Right flanking sequence: Indices 722906 -- 723405
GGTGTCATAACATTTTTTCACTGATCAGGTGTGACTTACAGGGCTAGAGGGCTCATCCGTGTAAG
AATTAGGAATTCCTCTTCCAACTCGTCCCGGAATGGGCGTTATGGCAAAGAACAAGAAGAAAACG
AAAGGAGGAATTTGTCCAATAGTAACAAATGGTGCCTCCACAGGTTGACATCCGATCCAACCTAG
TAGTAAGCGATCCGCCAAAAGCAACCAAAATATTCCTTGGTGAATCGGGCGAAAACTTGAACTAC
GCACATACATACTTTTAAAAAAAGGTAAAGCCAACAGACATATAGAAACTGGTGCTATTGCGGCT
ACACCTCCCGATTTGTCAGGTATACTACGAAGAATGGCATGGATCGGTAGGAAATACCATTCCGG
CACAATATGAGGCGGGGTGGGCATCGGATTAGCAGGTATATAATTGTCGGGATGCCCCAAAACAT
TAGGAGCATAAAAAATCCAAATTGAAAAAAAGATAGCAGAAGCTA
Done.