123.fas.2.7.7.80.10.50.500.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NC_068018
Parameters: 2 7 7 80 10 50 500
Length:  747621

Tables:   1   

This is table  1  of  1  ( 104 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12968--13001	17	2.0	17	94	0	59	35	26	26	11	1.91
33455--33484	15	2.0	15	100	0	60	6	13	0	80	0.91
37586--37613	13	2.2	13	100	0	56	39	21	25	14	1.91
38717--38762	18	2.3	21	71	21	53	19	39	13	28	1.89
57585--57627	18	2.4	18	81	18	54	18	20	25	34	1.96
70663--70741	39	2.0	39	97	0	149	21	27	18	31	1.97
71093--71147	27	2.0	28	96	3	103	40	3	14	41	1.63
90224--90261	19	2.0	19	94	0	67	39	15	36	7	1.77
92696--92741	22	2.1	22	87	0	65	36	4	15	43	1.66
97755--97809	27	2.0	28	96	3	103	40	3	14	41	1.63
131472--131497	13	2.0	13	100	0	52	7	15	23	53	1.67
161300--161335	18	2.0	18	100	0	72	38	5	16	38	1.72
175742--175783	13	3.2	13	80	12	59	64	7	21	7	1.43
217286--217387	53	1.9	53	100	0	204	26	21	29	22	1.99
217447--217485	19	2.1	19	100	0	78	5	33	20	41	1.74
231768--231809	21	2.0	21	100	0	84	47	9	14	28	1.75
244759--244804	22	2.1	22	87	0	65	36	4	15	43	1.66
262783--262816	17	2.0	17	94	0	59	35	26	26	11	1.91
283270--283299	15	2.0	15	100	0	60	6	13	0	80	0.91
287401--287428	13	2.2	13	100	0	56	39	21	25	14	1.91
288532--288577	18	2.3	21	71	21	53	19	39	13	28	1.89
307400--307442	18	2.4	18	81	18	54	18	20	25	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
320478--320556	39	2.0	39	97	0	149	21	27	18	31	1.97
320907--320981	17	4.5	17	89	3	125	36	4	13	46	1.62
320919--320984	6	11.7	6	74	9	59	37	3	15	43	1.62
343896--343936	20	2.0	20	90	0	64	31	26	26	14	1.95
357264--357321	27	2.2	27	84	3	73	29	20	24	25	1.99
361016--361060	10	4.3	10	86	10	63	26	0	0	73	0.84
361016--361060	22	2.1	22	88	8	67	26	0	0	73	0.84
400753--400792	21	1.9	21	85	10	55	37	10	35	17	1.83
409866--409901	18	2.0	18	94	0	63	38	25	13	22	1.91
417925--417982	28	2.0	29	90	9	93	18	37	17	25	1.93
423013--423054	12	3.4	12	81	15	50	4	19	23	52	1.65
425935--425965	15	2.1	15	93	0	53	32	29	32	6	1.83
466150--466249	37	2.8	37	83	8	129	34	30	28	8	1.86
466273--466398	62	2.0	63	93	3	218	19	23	23	33	1.97
491970--492004	18	1.9	18	94	0	61	11	20	25	42	1.85
520486--520525	21	1.9	21	85	10	55	37	10	35	17	1.83
529599--529634	18	2.0	18	94	0	63	38	25	13	22	1.91
564107--564162	25	2.2	25	93	0	103	37	21	12	28	1.90
575054--575106	27	2.0	27	84	0	70	30	15	24	30	1.95
579697--579817	63	1.9	64	91	1	199	19	21	23	36	1.95
581703--581772	9	7.8	9	93	0	122	11	14	11	62	1.54
581699--581772	18	4.1	18	98	0	139	12	14	12	60	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
617155--617195	17	2.4	17	100	0	82	34	4	12	48	1.62
617164--617232	23	3.0	23	82	4	95	37	4	14	43	1.65
617170--617232	11	5.6	11	69	3	54	36	4	14	44	1.66
630925--630961	11	3.5	11	88	3	58	67	0	0	32	0.91
630951--631013	22	3.0	22	91	8	98	60	3	12	23	1.47
630925--630979	3	18.7	3	79	20	55	67	0	3	29	1.08
631505--631562	25	2.6	21	81	15	55	75	0	10	13	1.04
631544--631573	14	2.1	14	93	0	51	83	0	3	13	0.77
638929--639006	9	8.7	9	76	0	84	33	26	6	33	1.82
638922--639018	18	5.6	18	95	3	164	35	25	6	32	1.81
641395--641463	21	3.2	21	72	20	70	55	8	24	11	1.64
641396--641443	21	2.3	21	89	3	71	54	10	25	10	1.66
647769--647797	10	3.0	10	95	5	51	27	20	0	51	1.47
655153--655185	13	2.5	13	86	13	50	78	0	0	21	0.75
659885--659928	23	1.9	23	81	9	54	15	13	0	70	1.17
662564--662611	17	2.8	17	87	3	60	31	0	4	64	1.12
663127--663170	22	2.0	22	100	0	88	13	22	4	59	1.53
663668--663695	13	2.2	13	100	0	56	39	0	0	60	0.97
663668--663705	15	2.7	14	84	11	51	34	0	2	63	1.09
667016--667088	28	2.7	27	68	21	62	43	0	0	56	0.99
667049--667134	35	2.5	33	90	5	127	46	0	0	53	1.00
671204--671235	15	2.1	15	100	0	64	53	6	0	40	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
671316--671353	20	1.9	20	94	0	67	34	18	7	39	1.80
677975--678058	22	4.0	22	84	9	129	71	0	17	10	1.14
677975--678061	10	8.3	11	67	17	60	71	0	17	11	1.14
677985--678050	18	3.4	18	69	18	60	71	0	18	10	1.14
678006--678065	19	3.0	19	77	13	75	66	0	20	13	1.24
677984--678065	41	2.0	41	100	0	164	68	0	19	12	1.21
679961--680013	17	3.1	17	78	13	54	32	0	5	62	1.19
684096--684138	21	2.0	21	100	0	86	32	0	9	58	1.30
684389--684423	14	2.5	14	95	0	61	22	0	0	77	0.78
686203--686235	16	2.1	16	100	0	66	36	6	39	18	1.75
688608--688664	28	2.0	28	86	6	80	43	0	0	56	0.99
688655--688744	16	5.4	18	67	24	63	41	0	5	53	1.24
688666--688697	16	2.0	16	100	0	64	37	0	6	56	1.25
688680--688715	12	2.9	12	95	4	63	36	0	8	55	1.30
688686--688726	13	2.7	16	75	25	52	34	0	9	56	1.32
689487--689518	16	2.0	16	100	0	64	43	6	18	31	1.75
692215--692281	33	2.0	33	100	0	134	25	14	14	44	1.84
692342--692377	16	2.2	16	100	0	72	22	13	0	63	1.29
703963--703987	12	2.1	12	100	0	50	60	8	8	24	1.52
705046--705080	17	2.1	17	100	0	70	34	5	5	54	1.48
708271--708474	9	21.5	10	69	23	97	41	2	0	55	1.20
708264--708374	6	19.0	6	72	14	72	41	2	0	55	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
708264--708501	57	4.4	56	70	17	146	40	2	0	56	1.17
708271--708352	3	27.3	3	71	9	60	40	1	0	58	1.06
708338--708404	21	3.3	21	76	16	61	44	7	0	47	1.31
708370--708410	21	2.0	21	90	0	64	46	4	0	48	1.23
708415--708473	16	3.6	16	73	8	57	40	0	3	55	1.16
708460--708527	12	5.9	12	72	16	63	33	0	1	64	1.02
708449--708522	24	3.2	24	72	14	66	35	0	1	63	1.03
708452--708524	21	3.3	21	73	17	67	34	0	1	64	1.02
708403--708527	45	2.7	45	80	6	117	36	0	2	60	1.10
708489--708533	21	2.1	21	100	0	90	33	0	4	62	1.15
709716--709751	18	2.0	18	100	0	72	50	0	5	44	1.25
714417--714464	23	2.0	25	92	8	82	31	0	10	58	1.32
714759--714811	11	4.8	12	77	11	51	60	0	0	39	0.97
714758--714818	21	3.1	19	69	19	52	60	0	0	39	0.97
714767--714823	11	5.3	11	71	24	50	56	0	0	43	0.99
722842--722905	32	2.0	32	100	0	128	28	15	15	40	1.88

Tables:   1

The End!