Specifications
==============

Sequence source file: "/mnt/biodata02/home/xyzhang/pmgdraw-test/test_set/outdir_mt1/NC_043907.1/NC_043907/Repetitive_sequence/123.misa.ini"

Definement of microsatellites (unit size / minimum number of repeats):
(1/10) (2/6) (3/5) (4/5) (5/5) (6/5) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              1
Total size of examined sequences (bp):           179562
Total number of identified SSRs:                 59
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    2


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	43
2	15
3	1

Frequency of identified SSR motifs
----------------------------------

Repeats	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	total
A	-	-	-	-	-	6	7										13
C	-	-	-	-	-	4	5	1									10
G	-	-	-	-	-	5	4		1	1		2					13
T	-	-	-	-	-	5		2									7
AT	-	4		1	1	2		2						1		1	12
TA	-	2			1												3
ATT	1																1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	total
A/T	-	-	-	-	-	11	7	2									20
C/G	-	-	-	-	-	9	9	1	1	1		2					23
AT/AT	-	6		1	2	2		2						1		1	15
AAT/ATT	1																1