Specifications
==============

Sequence source file: "/mnt/biodata02/home/xyzhang/pmgdraw-test/test_set/outdir_mt2/NC_069806.1/NC_069806/Repetitive_sequence/123.misa.ini"

Definement of microsatellites (unit size / minimum number of repeats):
(1/10) (2/6) (3/5) (4/5) (5/5) (6/5) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              1
Total size of examined sequences (bp):           916319
Total number of identified SSRs:                 48
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	30
2	13
3	5

Frequency of identified SSR motifs
----------------------------------

Repeats	5	6	7	8	9	10	11	12	13	total
A	-	-	-	-	-	5	1	1	2	9
C	-	-	-	-	-	1	4	1		6
G	-	-	-	-	-	1	1			2
T	-	-	-	-	-	9	3		1	13
AT	-	5								5
TA	-	3	1		3					7
TC	-	1								1
AAT		2								2
TAG	1									1
TCT		1								1
TTA		1								1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	5	6	7	8	9	10	11	12	13	total
A/T	-	-	-	-	-	14	4	1	3	22
C/G	-	-	-	-	-	2	5	1		8
AG/CT	-	1								1
AT/AT	-	8	1		3					12
AAG/CTT		1								1
AAT/ATT		3								3
ACT/AGT	1									1