Specifications
==============

Sequence source file: "/mnt/biodata02/home/xyzhang/pmgdraw-test/test_set/outdir_mt3/NC_065233.1/NC_065233/Repetitive_sequence/123.misa.ini"

Definement of microsatellites (unit size / minimum number of repeats):
(1/10) (2/6) (3/5) (4/5) (5/5) (6/5) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              1
Total size of examined sequences (bp):           508005
Total number of identified SSRs:                 57
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    2


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	46
2	7
3	2
4	1
6	1

Frequency of identified SSR motifs
----------------------------------

Repeats	5	6	7	8	9	10	11	12	13	14	15	total
A	-	-	-	-	-	10	2	2			1	15
C	-	-	-	-	-	2	1				1	4
G	-	-	-	-	-	3	1	2				6
T	-	-	-	-	-	10	6	2	1	2		21
AG	-	1		1								2
AT	-	1	2									3
TA	-			1	1							2
AAC	1											1
TTC	1											1
AATA	1											1
CCTCTC	1											1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	5	6	7	8	9	10	11	12	13	14	15	total
A/T	-	-	-	-	-	20	8	4	1	2	1	36
C/G	-	-	-	-	-	5	2	2			1	10
AG/CT	-	1		1								2
AT/AT	-	1	2	1	1							5
AAC/GTT	1											1
AAG/CTT	1											1
AAAT/ATTT	1											1
AGAGGG/CCCTCT	1											1