Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_060491
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 484858
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Found at i:49794 original size:21 final size:22
Alignment explanation
Indices: 49765--49810 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
49755 TAAAATATAA
*
49765 GCTCCCTTCT-TCACTGCGTAT
1 GCTCCCTTCTCTCACTGCGAAT
*
49786 GCTCTCTTCTCTCACTGCGAAT
1 GCTCCCTTCTCTCACTGCGAAT
49808 GCT
1 GCT
49811 GCCAAAAAGA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 9 0.41
22 13 0.59
ACGTcount: A:0.11, C:0.37, G:0.15, T:0.37
Consensus pattern (22 bp):
GCTCCCTTCTCTCACTGCGAAT
Left flanking sequence: Indices 49265 -- 49764
GTAGTAGGTTGGTCCATCAGAGCTTGCAGTTGGAGATGCCGCAAAGATCTGGACGAAATGAGAGG
CCTTCTGCGTTGGAGCTAGGGAACCTAGGGCCAGATTGATCGGTAACTGAATCAGTTAACCAAAA
GATGCTGACACGATCATTACTTGCACAAAGAAAAAAAAAGGATTTAGTACTCCGCCCTTCCAGTG
CTACCTTTCTTCGATGTTCTTTTATTCTAGAAGATGGCTCGGATCCTTTTCGGTAGCTAGAAGCT
TTCCCATAAAAAGAATATGTAACCCCGTATCGATAGACGGGAGTTCCCCCAACAGTGTGAAAAGA
AAGGTCAACTACGTCGAACCTCCCGATCAATAAAATAATAAAGTATGAAAAACTGGATTAAGAGA
CGAAAATTCTTCAAAGAAAGCCATAGAAGTCATCTATTCTATTCCAGCGTGATTGCTCCCGTCGG
GATAATCTTGATTTTATAATACCTTTAATATACTTTAAAATATAA
Right flanking sequence: Indices 49811 -- 50310
GCCAAAAAGAGTTCCGCTCGCAAGCTCCGTCTCATTGGCCGTGAATCAGAAGCTACCATGTTCTA
ACTTGCACTTAGTCAATTGGGAAGATTAACCACAACAAATCGTAAACATCGGACCTTTAACAAGA
ATTTGATTTGCGTTCTTCTTCACTTTAAATCCAGATTTACTAGACCTTAAACTCTCCTTTCCTTC
CTCAGGATGAGACTGGACAATCAATTCACAAAGAATCTAAAGGGAGATACTAAATAGAGAAATAT
CCAAGAAAGACTTTGAAGCGAGTACTTCAGCGCCTGCTGGTCGCTAATCCATTACAAAATGCTTT
ATGGTAATATGCTATTACCCACAAATTTCAACTACTCGGGCATTCCGAATAAAAAAAGACCCTGG
AATTCAAATAAGAACAGGTTCACTTTACGGATATTTTATATTCAGCAGATGGGAAGTACTTGAGT
AAGGGAAGGATTACTATAGCTTTCCCCTTATGCGGATACGCAGAT
Found at i:52316 original size:14 final size:14
Alignment explanation
Indices: 52297--52324 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
52287 GAAATAAGAG
52297 TACATATTCGAGAA
1 TACATATTCGAGAA
52311 TACATATTCGAGAA
1 TACATATTCGAGAA
52325 GAAGGGATGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.14, G:0.14, T:0.29
Consensus pattern (14 bp):
TACATATTCGAGAA
Left flanking sequence: Indices 51797 -- 52296
CCAGAGATTCTTCTTCCTTGACTTGTGATCAATTAGACAAGAGGTGCATATAGCTCCTTGTAGGT
GCGGAGGAAAGATATCGGCTACAAAGAAAATTGAAGATGGCGACTCATAGTTAAGAGGATAAGTT
CGGGTCTGGTGAAGTCCCTACATTAAAAGATTCGGCCTTGCGATCATGCCCCTTGAGTCACGGTA
CTTTGGTTTAGTCAGGATCACCCTGTAAAACTAGCTTAATAGAGGTCGAAATAAAAGAGTTTTGA
GGTTCAATCTTCAAGTAAGGAGGAGTAAAGAAGAGGAATCGCGAACATACTCAATAGATATCTTT
CTTCGACGAGGCGGTGCCTATTAAAGAGTTATTATTTCAGGGACGCCACCCTACCACCGATGAAT
GCTACCCGAGGATGAGGCCTTGCTTGCTTATTATGTGGTAATTGTCTACCTTCCTGACGAACCGG
GCAGCGTAGAGAAAGGCGAGATGGTTCATTTCTATGAAATAAGAG
Right flanking sequence: Indices 52325 -- 52824
GAAGGGATGGTTATTTTCTGTAGAGTAGATACAGAAGGGTCCAATCTAGTATAGTCGGGCTTGGA
AGCCCTACGATTGCTTATGGGCTCATCTAGCAGAAGAATGACATGATGAAGAAGCTAAAGCTCCC
CTTGCTATGCTTCGGTTGCTTTCATTGATCTAGGATTGTTCCCGGGTATCATCCTCAAATAGGAA
GGAGGTTAAGGGCTTTTGATCGAGGCAGTCACTAGAGCTTGTTGGCCGCGAGATGCACTTCAAAA
GCACTAAAATCCGCAGGTAAGAGATGAAGCTTCATTTTCAATATTAGAAGCAAAAGTCTTATAGT
TTACTACTAATATAATCTATTTCTTGTACAGCAGCTATAATCGTTATAGTTTTGAATAAGGCGAC
TGCTCCGGGACATAAAAAGAAAACGCTAGTGAAGACAATAAGGGGATGCTATCCACTACAAAAGG
AAATCCGAATCGGAACAGGATCGAGATCACAGCAAATAAAAGGTT
Found at i:53936 original size:22 final size:22
Alignment explanation
Indices: 53908--53952 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 22
53898 ATAGACGACT
*
53908 TACTTTG-ATTTCATCATCTATA
1 TACTTTGAATTAC-TCATCTATA
53930 TACTTTGAATTACTCATCTATA
1 TACTTTGAATTACTCATCTATA
53952 T
1 T
53953 TTGATTTATA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 17 0.81
23 4 0.19
ACGTcount: A:0.29, C:0.18, G:0.04, T:0.49
Consensus pattern (22 bp):
TACTTTGAATTACTCATCTATA
Left flanking sequence: Indices 53408 -- 53907
TCTGTGACGTATGTCCAATCCAAACAACTGTTCCTAGCCGATGGAAAGGGTGAATGAATTCCTTT
ATTACAAAGAGGTTATCACGCTCCTCCGTTAGGTAGTGAAATTTGAATGGCTTTGCCCGCCTTGC
GTGGTGTGTAATCCTAGGGCGCCATCATTACATATATGAAAAGGCACCGGACCATCTGCCATATG
AAAGCCAAAACGGGATCTATCAAAACGGATCCCTTCATTCCTTGGTCGATTATTTGGAATACGAG
GCTAGATTTCTTTGCTTTCATTTTCTGTTCCGTTGCGCGCCGTGCCCGAAGTAGTCAAGACTGAG
AAATGAGATATTTGAAGAAAGGAAAGGGGGAGCTTTACGCAGAAATGAATAGGCATCTGTACAAT
AGAAAAGGGGAAATATAGGTTGAATGCACATTTTAATATATCTTAGCATAACCGTAGGAGACAAA
AGAAGCAACAAAGGTGACTCTCAACTCCATAACTGATAGACGACT
Right flanking sequence: Indices 53953 -- 54452
TTGATTTATATATGTTTTGTGATATGGATCGAATCCCTTACTATAGTGAAAAGGCATGACTTTCT
GATTGAAGAAGACCTGAAGCTAGCTCGAATCGACACAATTCAATGGTTTATAGCCTCTTTCTCGA
AATATTTTTTTTTGTTCAGTGTACCTGGTACAAAGACTACTTTAAAGGCCAATAAGCAGAAATAA
CCATTCCAATCAGAGCAGATTACTTAGATTCAGTCCGCGTGGTTCGGGTGGTTCACTTCGCTCGG
GAAAGTCCCTTATATCCCGTCTGGGGAACCTGGAGCAATACATAAATAAAGCAGGTACTTGGAAG
GTGATCCATGAGCCTAAGTAATAGGCTCAAGTGGGAAAGATTGAATAAAAAGACCACAGGGAACT
CAAAGGATGGAACCCCCACAACTAAATAAGCCCGCCGGTCACTCCAGAGAGGAATTTAGGTGCTT
GGCTCTTCAGTCTATCTATGGTTGCTAAAGCCACCTTGATGAAAT
Found at i:80036 original size:39 final size:39
Alignment explanation
Indices: 79979--80057 Score: 140
Period size: 39 Copynumber: 2.0 Consensus size: 39
79969 CCCATCCTTC
* *
79979 AATATCATGATTGGGTCGACCAGGCCAGATCATGAGTGA
1 AATATCATGATCGAGTCGACCAGGCCAGATCATGAGTGA
80018 AATATCATGATCGAGTCGACCAGGCCAGATCATGAGTGA
1 AATATCATGATCGAGTCGACCAGGCCAGATCATGAGTGA
80057 A
1 A
80058 TAGAAAATCG
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.33, C:0.19, G:0.27, T:0.22
Consensus pattern (39 bp):
AATATCATGATCGAGTCGACCAGGCCAGATCATGAGTGA
Left flanking sequence: Indices 79479 -- 79978
CTACGATATAATAGCGGATATGGATCACCTGATTACGGATTTTATATCTAGGATGGGTTTGGCTT
TGCCTGTAGCTATTCTTGTAGCCGTTAGAGCTGGCCAAATGCTCCATCTAATGGATAGTATGAAT
ATAGAAACAAAGGTTACTGATGTAACCATGAATGTTATTAAAGAAAAAATAGTGGAACAACTCTC
AATAATTTTTAGAGTCTATAGAGATACTACTCCGGATGGGAACGTGAACCTACCCGCAGAAGTAA
ATCTCCAAGAGTTATCCGAACATCTTTTTTTTCGCGACGAGAGCTTTCAATGTCTGAACCAGATC
TATTTAGATCTGGTCAATCAGGGCACGCAGAGTCCCCACTTTGCCCAAGCTCTGGCGTTAGTGCT
TTCGCTCTAGCAAGTTTTTTCATTTTAACAGAACGTAGAGGGGAACGATGTTGCACCATCTTCAA
CTCTTCTCTGGATCCGGAGTTTTTCGAGAAAAGGTCCCATCCTTC
Right flanking sequence: Indices 80058 -- 80557
TAGAAAATCGAAAACGTACATAGCTGTTCCAGCCGAAATACTTGGAATAATTCTACCACTTCTAC
TAGGAGTAGCCTTTTTAGTGCTAGCTGAACGTAAAGTAATGGCTTTTGTGCAACGTCGAAAGGGT
CCTGATGTAGTGGGATCGTTCGGATTGTTACAACCTCTAGCAGATGGTTTGAAATTGATTCTAAA
AGAACCTATTTCACCAAGTAGTGCTAATTTCTCCCTTTTTAGAATGGCTCCAGTGACTACATTTA
TGTTAAGTCTGGTTGCTCGGGCCGTTGTACCTTTTGATTATGGTATGGTATTGTCAGATTCGAAC
ATAGGGCTACTTTATTTGTTTGCCATATCTTCGCTAGGTGTTTATGGAATTATTATAGCAGGTTG
GTCTAGTAATTAGGGGGCGGCCGTTCGGTCGCCTATGATACTAGGACCAATAGGTCAAAAATGGG
TTTGTGCCGCAGGTGTTGAACGATCCACTCTACACAGGTGTGGGC
Found at i:81112 original size:30 final size:30
Alignment explanation
Indices: 81078--81176 Score: 198
Period size: 30 Copynumber: 3.3 Consensus size: 30
81068 AGGAGAGGAG
81078 AGGAGAGGGTAACGAAGTAGCTCGACTGAA
1 AGGAGAGGGTAACGAAGTAGCTCGACTGAA
81108 AGGAGAGGGTAACGAAGTAGCTCGACTGAA
1 AGGAGAGGGTAACGAAGTAGCTCGACTGAA
81138 AGGAGAGGGTAACGAAGTAGCTCGACTGAA
1 AGGAGAGGGTAACGAAGTAGCTCGACTGAA
81168 AGGAGAGGG
1 AGGAGAGGG
81177 GGGAACGCCA
Statistics
Matches: 69, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 69 1.00
ACGTcount: A:0.36, C:0.12, G:0.39, T:0.12
Consensus pattern (30 bp):
AGGAGAGGGTAACGAAGTAGCTCGACTGAA
Left flanking sequence: Indices 80578 -- 81077
AACCCTTTCTTTCATTCATCAATAGGGCCCTGGTCGGTTACTTTTCCGGGCCGGGATCGATAAGT
GGAAGTCATAAAAAAGAGATGCTTCTCTTCGCACCTCAGATCAAGAGGAAGGGTAGCTTGTCAAG
CTGGCCTATATATATCTTTTTATTAAATAATTAATATAAAATATAAATAAAAAGATTCGCTGTCT
TTTAACCGGCTGTTCTTCTTTGTCAACGCCTACTAAGGACCTATAGGTTCGCCTACTTGACTTAT
GAAAGATAATGAGACTGGGTTATTCAAAAAGGAAAAGGCGCTACTTAGCCCTAAATTTTTAGAAG
TAAGCGGCTGAGTTAGCCTAGCCTACCCTACTAATGTATTGTATAGTAGGGTATAGTAGGCGAGC
GAGTTAGCGAAGACGCTTAATAGATAAGAGAGCGTCGGTGCGTAGCCTTCATTCTACTACGCTAC
GAAAAGGTTACGAAGTCACTTAGCTCGACGACGTTAGGAGAGGAG
Right flanking sequence: Indices 81177 -- 81676
GGGAACGCCATACCTACATAGAAGAACCGCTGTTCGCTGACTTTCTAAGGTCTAACCTTTCGCCC
CCCTACTGAAAAGGGGCAAAGCCGCTTCGCACCACTGATAGACTACTTAAGATTCAATTCAAAAG
GCCCTACTTAGTTTCGCAAGCCTTTGTCATTGTCAGTCAACTAAGTGGGGCCTGAGGCCCCCTGC
GAATCCGTAAATCTGAGGAGCATGCCGCAACAAAAGAATGGTCCCCTATGTATTTCATTCTTTCC
GGAAGGGAAAAAAAAAGAAGTACCCCCATCATGGTGAACCTCTCCTTGTGATCGGGATGAGGTAG
ATGCCTCCCAGCCGGGGGGGCGGATCGAATCGGAGTTTCCTTAGGCAGCCACCGACCTACAGTTA
TCCTTAAACTTCCGTGCTTGGTGGAGAAGAAGCGAACAAAGGTACGCTCGCTTGCTGTCTTGTTC
TCTGCCGCGAACTGGGATCGCTCGCCAGCTAGGTCAGATTGGAGC
Found at i:88975 original size:63 final size:63
Alignment explanation
Indices: 88847--88979 Score: 194
Period size: 63 Copynumber: 2.1 Consensus size: 63
88837 CGATTCAAAG
* * * ** **
88847 TTTTTTTTTATCCTTTGAATTTCTCCGACCTACCGAGAGAGTAGCTTCGATGCTGTCCCTTTT
1 TTTTTTTTTATCCTTTGAATTTCTCCGACCTACCGAGAGAGTACCTGCCATGCCATCCCCCTT
*
88910 TTTTTTTTTATCCTTTGAATTTCTCCGACCTACCGAGATAGTACCTGCCATGCCATCCCCCTT
1 TTTTTTTTTATCCTTTGAATTTCTCCGACCTACCGAGAGAGTACCTGCCATGCCATCCCCCTT
88973 TTTTTTT
1 TTTTTTT
88980 ATTCTCATGA
Statistics
Matches: 62, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
63 62 1.00
ACGTcount: A:0.16, C:0.26, G:0.13, T:0.45
Consensus pattern (63 bp):
TTTTTTTTTATCCTTTGAATTTCTCCGACCTACCGAGAGAGTACCTGCCATGCCATCCCCCTT
Left flanking sequence: Indices 88347 -- 88846
GGCAAAGAAAATCTCTCTCAAAGAACGACTCTCTAAAGTCGGGGATTTCGATGAAAGCAAGGTAT
ACGCCATCTTTGACATGTTGATCGCTAACGGTCAGCTGACTCTACCTCCGTGTAAGCGACCCGCC
AAGATCGATAAAGTTGATGATTCCAACTACTTACTGTCGGTCCCACAGGTCGTGGGACATACACT
AAGACAGTCTTTTCTCTTTAAGAGCTGGTGCAAGAAGGCCTCCGGACAAAGGCATTAATACTAAG
AGAGGAAGAAAAGAAACCTCCCAAAATTCGTGTTGTACTGTATTATTGGAGGCGGTAGAAGCCTT
AATTAATATATAATATATATAATATAACGCGATATAAAGAGAAAAAGATGGTCATGGTTTAAACT
AGATTGTCCCAGTTGGAGTTCTGACTATAGCTGCAACCTATCTCATATTGGGGAGACGATCACAA
ACTAGAAATTTCATAAGAGAAGAAAGCGTAGAATTCGATTCAAAG
Right flanking sequence: Indices 88980 -- 89479
ATTCTCATGAGGATGATAGGACTTAATCAAGTCCTATTCAAACTCAAGTTGCTACGATGGCTTTT
TTCCTTTTTTTTTACCTCTCTTTGGGCGTGTACCAAAGACCCCGTTCCGAGAAAGTTTTGGGGGA
AGGTACTTTGGTACAAAAAGAGGGTCATAGTTGTGTGCAAACTCTATCAGCTACTTTCCGAACAG
AGGAAGAAGAGTTGATCGTTGCATTACTGTGAGATGCCCAAAGACTCCCATGCCTTTCTTGGTTG
GACCAACCAGATTTCCGACAAGTCTTTCTGTTAGAACAAGAAGCGGAACTACAAGTGAATCTTAA
TAAGTCATGATACTTTCGATTACGCCCAACAGCCCGCTTGAGCAATTTGCCATTCTCCCATTGAT
TCCTATGAATATAGGAAACTTGTATTTCTCATTCACAAATCCTTCTTTGTTTATGCTGCTAACTC
TCAGTTTGGTCCTACTTCTGGTTCATTTTGTTACTAAAAACGGAG
Found at i:99132 original size:17 final size:18
Alignment explanation
Indices: 99110--99150 Score: 59
Period size: 17 Copynumber: 2.4 Consensus size: 18
99100 TTAGCAACTC
99110 ATAACTCCCT-AACTGCT
1 ATAACTCCCTAAACTGCT
*
99127 ATAACT-CTTAAACTGCT
1 ATAACTCCCTAAACTGCT
99144 ATAACTC
1 ATAACTC
99151 ATAATAACTC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
16 2 0.10
17 19 0.90
ACGTcount: A:0.34, C:0.29, G:0.05, T:0.32
Consensus pattern (18 bp):
ATAACTCCCTAAACTGCT
Left flanking sequence: Indices 98610 -- 99109
GCCTAACTCACAGGCAGATCTAAAGGCTATTAAATAGTCGCCTAAGCAGACGATGGACGAGACTC
TGGAAGAGTGGCTTTCTGCTGAGGTTGCTTCTGACGGGCTTGTGACCAACTCGGTAAAAACCCCT
AGTGAAAACTATGTCTGTATGTATAGTATAACCGCCGCTTCAAATCAATTGAATCAATGCAAGCA
ATGCTGTTCCCACATGCCTATTCATTCCTATTTGGTTGGATTCCTCGGTTCATGTTATGCCTTAG
ATGGAATAGCCTGTTTTTCTAGCTATTAGTTTCTAAAGATTAAGACAATTAACTCTTCTTTAAAC
CAGTTCCGGGGGCAGTTACACTGCGCCAGACCCCCCAGTTCCACCAAATTAAGAATATCTGTAAC
TACCAATATATTTATATTACTTATATTTCTAATACCGGTAACTAAGATTTATATTTATCATACCT
GTAACTACCCCGTAGGGAACTAAAGAGAATGACAATTAGCAACTC
Right flanking sequence: Indices 99151 -- 99650
ATAATAACTCTTCTAACTCATAACCCCTTTAGTTTAGTTCCGGGGGAGTGCCCCCAGTTACACCC
CTAACTAAAAAGACTTTTAATACCTAATAATACTTTACTGGTAACTAATTAGAATTCTATTAATA
ATAATAACGGTAACCTCCCCGTAGGGGGAATATCAATAATAATAAGACTTTAACTTAACCCCGTA
GGGAACTAAAAGAAAAGAGTGAAGCTATGAGGAATAAAGTAACTCGACTGCAAAGGAGAGGACTT
CAAACTTCTTTTTTCTTAAAAGATATAGGATTCCCCAACAAGGACAAGAAAGAAGGATGTGCCTA
ATAACAGTAACTTATATTTATCATACCTGTAACTTAAATTAATTGAGTTACGAGTTCGAGTTAGC
TTTCTAGTTTATAAGGGAGTTCTAGGTAGGAACTCTGCATAATACCTAATTAAGAGGGAACTAAC
CTAAACTTAAGGAAAAGAGTTATAGGAGTTGATGGCAGTTACACT
Found at i:121303 original size:30 final size:30
Alignment explanation
Indices: 121267--121341 Score: 150
Period size: 30 Copynumber: 2.5 Consensus size: 30
121257 ATCTTCCGTC
121267 TCGTTACCCTCTCCTTTCAGTCGAGCTACT
1 TCGTTACCCTCTCCTTTCAGTCGAGCTACT
121297 TCGTTACCCTCTCCTTTCAGTCGAGCTACT
1 TCGTTACCCTCTCCTTTCAGTCGAGCTACT
121327 TCGTTACCCTCTCCT
1 TCGTTACCCTCTCCT
121342 CTGAGATACG
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 45 1.00
ACGTcount: A:0.12, C:0.39, G:0.12, T:0.37
Consensus pattern (30 bp):
TCGTTACCCTCTCCTTTCAGTCGAGCTACT
Left flanking sequence: Indices 120767 -- 121266
CTATTTTCTGGTTAAATACATTACGAGATGTTTTTCCATACTTTCCGCATTCAGTTCTAGTTATT
TCTGCGCCCCTCCACTTACTCGTAACAGGCTTTCCTCGCTAAACAAGAAGAAGCTGCTAAGGTTG
CCCAATTCGTTCTATCATGGGACAGGCAGGGTTTCGCACTAAGCAAGTAAACTACCTTTATCTAA
CTGAGTTATCTGTCCTGTGAGACATAGAAGGATTATCTCATTAACTCATTCAATCAGGAAGAAGT
TTAGTCATAACGATCAGGCTATTTCAGTAGTTTTAACCCTACCCTAAGAGCGTGTCTGTCCCTAT
ATTATTTCCTCTAAAGTGGAGTCATGTCTATAGACGATAGGATCTTACGCTCATGGGAGACCGGC
TCTATGCAAGCCGCAGCTCTGAACGCATATAGCTCTACTGGGCGTGAGTTTCTCGTTCCATGTGG
GATAGCTTGCTCTAGTTGACACCCCGAACTATCACATCTTCCGTC
Right flanking sequence: Indices 121342 -- 121841
CTGAGATACGAGCTTGACAACCACATAGTAATATCCTTTCAAGTACTCCTACAGGGATAGGATTT
TCCTTCTTTTTTCGACAACCAGTATAGAAAGTATCTCGCCCCTCTGTAATTCTTATCCGTCCCCA
GATGCTGAATGAGCTAATCCTGATCTTTCTCTCATAGGGTGAGAACAAGCTCGACCACTCTTAAG
CTAGCCCGAAGCTTGATCCCGCGGCCCCGATGCTACACATCAGTTCAGAACTCTACACATAAGTT
CCTTGGCTCTGCTCGCGAATCCATTGCAATTGGGGCGAAATAAATAAAATCCCTTTTTTCTCTGT
CTGTGCGCTTAGCATCGCTTTAGCCGCATTGCTATTGCTATCTGGGAATCGGGGATCATTCCTTA
GCGCTTCACACTAAGTAAGCAAGCTATCTCTCCCTATGTCGAGCAAGTAAACTACCTCTTACTCT
GCCTCAACAGGATCTGGGCTCCGCTTGTCTTGGTCCTTAAGTGGA
Found at i:136451 original size:15 final size:16
Alignment explanation
Indices: 136409--136451 Score: 52
Period size: 18 Copynumber: 2.6 Consensus size: 16
136399 TCCTACCTTA
136409 ACAGTCGATCATGCGCTC
1 ACAGTCGATCATGCG--C
*
136427 ACACTCGATCATGCG-
1 ACAGTCGATCATGCGC
136442 ACAGTCGATC
1 ACAGTCGATC
136452 TGTCCATCCG
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
15 9 0.39
18 14 0.61
ACGTcount: A:0.26, C:0.33, G:0.21, T:0.21
Consensus pattern (16 bp):
ACAGTCGATCATGCGC
Left flanking sequence: Indices 135909 -- 136408
GCCACATAAGAAGCTTTTATTGACCTTTTTTGCCTTTCCTCCGTCTTCGTCACCTGATGACTTTC
CTGCTTTACTTTGTCGGCTTTGGTAGGGTGGTAGCATGTCCTTTAGCAAGGCTAGGCACCTTCCT
TAAAGGAGGCAGCATCCGATCTTTAGCATCCTAGCCAGGGAAATCCCCAAATCGCGAGTCCGGGG
CATATACTTTTTCTTTATCCCCCAGAGAATCCGACAAGAAAGAAGATAAAATAAAGTACATATAT
ATGGGCAAGATCCATATTCCATTTCTAACAGTTCCTTACTTTCTATTCTCTAATCTCGTATGGCA
GCTTTCAGTCTCATCTTCAGTTTCGGGACATTGTTCCTATGCCTCTTTGAAGTGAAGCCCTTATA
TCGAATGATTCAAGACATTTGATTTTATAATAGAAATGAGAGGACAGCCGAATTGACAGAAAATA
GTCTGAACTTGTTGATCAACTCTCTTTGTTGAAGGTCCTACCTTA
Right flanking sequence: Indices 136452 -- 136951
TGTCCATCCGACTACATTCACTGGGGGGTGAGGTTGTCCAATTTCAATTATGTGCCGCTCGTTGA
CATCTAGTTTCCATTGCCGGTGTGAGAGATCTTCCTTCGGTTCTAGTCAAGTATGGCAGCTTGAG
GTCTCCTATTTCACTTTCACCAGCCATTGGGAACTCAAATAAACTTTCATTTAACGGCAGGCGAG
AAAGGTTCTGAAAGAAAGAAAGGTAGAAGGGGGGTTTGCTCCCGTTTCGGGGTTCTCTTGTGGAC
TGGCTGTTGACTGGCCTTTGCCTGGGGAGAAAACCGGTGCTTTTAGCTTAAACGGATTTTAACTG
GATCGGAGCCTTTCGGAAATCCTCCCTTTTTGGCTTCACTTGAGCGGTTGACGCAATCCAAGAGG
AAGAGGAAGCTAAACCCGTGCTGACGAATAACCAAACCCCTTAATTCGTCGAGTAAAGTAAATAG
GGAAGGTATAGGTTTGCTATGAATGACCCAGTATCGAATACAGGT
Found at i:184135 original size:2 final size:2
Alignment explanation
Indices: 184128--184158 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
184118 AAAATAGTAT
*
184128 TA TA TA TA TA TA TA TA TA TC TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
184159 TACTATTAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Left flanking sequence: Indices 183628 -- 184127
TAGCCAACTCCACCAACTCTGATTCTGGGTATCCTAGCAGCACATGCTCATACAGATAAAGCACA
TCATTGCTAACATCAACTCCAGGAACTAGAGTTGCTGATGAAAGGGACTGAAGAACTATCTCTTT
CTTTTCTTGCAATGCGTTCACAATCACTTCCGCTGCAAACTCTAGTCTTCTTTTAGGCCATCTGC
TATCCATGTGAGTAATAACAGTAGTGAACTTCCTATAACTCACAGACTTTTCCTTCATCGGGTGC
TTGATCTGGAGGGCTGCTCTGGTTGTTGTAATGAGCTAAGAATCTCCAGTGCTCTTTCATAATTG
TGTTCTGTGACGCCGAAGCTTCCTTGGCAGAACCTGTACCCCCATCTACCAAACCAAGAGTGTCC
GTAAGCAACGCCATGGAGAAGACGAAGGTCCATAGACCGCTTCTTTGGTAGATCCTCAACAGTGA
TTTTCCTCTCATATGGTTCCCTCCTTATGTGCATAAAAATAGTAT
Right flanking sequence: Indices 184159 -- 184658
TACTATTAATTTCTTCTTCAAATCGACCTAAAAATAGAATAAATTATAAGTGTCTTAGCACCTTT
TCTTTACTCGTGATTCAGGCAATCCAATCTTCCGTGTGTAAGGTGGAAGCCCCCCAAAAAGGTTT
TCCATTAATGGGTGATCAAAAGCATCCGGTCGATATTAGATAGAATGCTATAAACCTTAAAAGAG
AGATTTTTGAGGGACCAGGCTTTGTCGTTTAGTCCTCTGAAAGTGAAATTGCTAAAAAAGAAAAA
AAGGGATACACCAACCATCCGCTCCGAGCTGTGTACCTCCGTCTTGAGTTGCTTTGCCGAAGACT
CCTCGCGTTTCTTAGTTAGAGAGTAAAGGGCGGTGTAAGTGGTTCCCCGTTTGCACCCCTCTTTC
TCAGTTTGAGCTGATAGACTTCTTCTCCTATTCGCGAGAGTTTCACTTGCTTAGGCTTCCTCTTG
GCTTTGCTTCATCCTCTCCATTTCTAGCCCTTGTAAGTTGAGTTG
Found at i:187083 original size:21 final size:20
Alignment explanation
Indices: 187053--187092 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
187043 AACCCAAAGT
187053 TATATTCGTAGGTCGGTTAC
1 TATATTCGTAGGTCGGTTAC
*
187073 TATATATCGTAGGTTGGTTA
1 TATAT-TCGTAGGTCGGTTA
187093 GGTCGGCTTG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.23, C:0.10, G:0.25, T:0.42
Consensus pattern (20 bp):
TATATTCGTAGGTCGGTTAC
Left flanking sequence: Indices 186553 -- 187052
GGATACGTGAGTCACCGCCTAACTATCAGCCTATACCCAAAAACGATAAAGGGTACAAAACTCGA
TCAACCCCTGTCTTCCATGGATTATTTGATTACGTAGTTCGCCTGGATAGTTTAACCTGGGATTA
GAGCCCATATATGTGTACCTGGAGGGGCTTGTACCCTAGAGGTTGCCAATCTATCGATACCAGAC
TCAACTCTAATAATATAAAAAAGAAGTGAGTAAACTCCATAACGTAAAAAGACCGAAATTAGACC
ACTAAAGCGACGACCTAGAAGGGTACCCCTTCAACCCCTATAATTGCTTGCTGAAGGACAACTCT
GGGAAGCTTGAAAAAGACCAAATAACAGTAACATAATCACAATATCATAGATTAGGCCGAACATT
TCATTCTACTTAAGAAAAGAGGCCAAAATAGAATGTGCAACTCAGCCCTTGACCCTTTGGGATGC
GATTGATCTGTTTTTCCAACTAGACTTTTCAACCTAACCCAAAGT
Right flanking sequence: Indices 187093 -- 187592
GGTCGGCTTGCCTCTAACCTGCTCTCATGACTGCTAGATTACATACTTTACTTTTGTTCCTTCCT
GCGTTTATATTTTTCATTGTCTTGAACCTTTATTTTTTCTCTTCGGTGACTCCCTCTCCTTTCCC
TGCGCCCGCGGTCAAGCTACTTCGTTCCTTTCATCAATCAAGCTACTTCGTTCCTTTCAGTCGAG
CGAGTCTAGCTCCCCTGCTTGCTTTAGAAATGGAGGGCTAAATAGCGCCTAGCTCCCAGTCATAA
CAGTTGGAAACGCACGGCTAGGTCAATCAGCATAAGAAGAATCCGACGCTGAGGATTGACTCTTC
TCTTTTTAAGGAGTTTTCTTAGTCTTTTCTTGGAGCTAGAGCATCTAGGTCTTTTATGATATGAT
ATTGAATCATTCCTTCTTCGTTTACAGCAAAAAATAAGACTTACCTATGGAATGAATGGGAAAGC
AGCTGCTTAGACATAGCCGCTATCGCCCATGGCAAGGGTGAGTCT
Found at i:197602 original size:25 final size:25
Alignment explanation
Indices: 197564--197613 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
197554 TTCCCTACTT
** *
197564 CTGTACTTGGTTGCCTGTCTCTAAG
1 CTGTACTTCCTTGCCTGTATCTAAG
197589 CTGTACTTCCTTGCCTGTATCTAAG
1 CTGTACTTCCTTGCCTGTATCTAAG
197614 TAGGTACGTC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.14, C:0.26, G:0.20, T:0.40
Consensus pattern (25 bp):
CTGTACTTCCTTGCCTGTATCTAAG
Left flanking sequence: Indices 197064 -- 197563
TTGACTTCGTAACCTTTGGTGCCTCCTCTCTAGAGCTTTCATTCGAGCGCACCCTCATTCCAATC
GCCTCGCTCTAACGAGTAAACTCCCTCTCCTGTTGGTCGAGCTACCCCGTTCCTCTCCTTAAAGA
GCAAGTAACCTACCTTCGATGCCCATTTGTTGATTAATCTGGGGCGGTATTCATCCCCGGCTTTG
GTGCCTTTCCTCGCCCTCTTTCATTTGGTAATACCCTTTGATTGACTGCATTTGCTTATCCTGGT
ATATAGGTAGTGAACTTCTGTCCTGTCGTATTGTCCTTATTGAGTTATCCTAGCAAGAATCCCCC
ATCGACTAAGAAAGCTATGTATTGATTACTATAAGAAGGAAGCCCCGCTATCTATCTCTGCTTTC
CTGTCTTCCTATCTTTCTGCCTATCTGTCTTTCCTCTTTCTGCTTTGTCTTTCTCGCTGTCGGTA
GAGATTAGTATTTCCTAAGTTGTCTGAGGCTGAGCTTCCCTACTT
Right flanking sequence: Indices 197614 -- 198113
TAGGTACGTCTCGCTTCGCTCCTCATTTCCTTGCCGTCTTTCAATTCTGACTATTGAGAAATATC
CATGAGTCTGTCCCCCCGCGAGTAAATAAGCTAACCTTGGCTTCCCCTTCGACTGAGGCGGACTT
GAGCCTAGTTATTGACTTCCTGAACCTTAAACAAGTTATCAAAGAAGTGGATTTGCTCACAGCTT
CTCCTTCGTTCCTAGACCAACAGCTTAGCTTACCTTAGCCCAGCCGTACGTCCTACTGCTTACCT
TAGCCCAACCATAGGTCCTACAGCTTCGATGGCAGAATGATTGACCGGGCCGCTTGGCCCACTTG
AACTAGCAGCCCTACCTGCTGCCGTACCTGTCTGTGAATGAACTTCTGGATATTCACCTACCAAC
ACAACCCGGGCCACGCCGGGACTTTCTTTATCCATTCAATCAAACTAGGGAAGTGGTTAGAGAAG
CAGTAGCTGCTATGCGAGTTAGATCGGTCAAGTTTTGATGTAGAT
Found at i:197872 original size:30 final size:30
Alignment explanation
Indices: 197835--197899 Score: 94
Period size: 30 Copynumber: 2.2 Consensus size: 30
197825 CCAACAGCTT
* *
197835 AGCTTACCTTAGCCCAGCCGTACGTCCTAC
1 AGCTTACCTTAGCCCAACCATACGTCCTAC
* *
197865 TGCTTACCTTAGCCCAACCATAGGTCCTAC
1 AGCTTACCTTAGCCCAACCATACGTCCTAC
197895 AGCTT
1 AGCTT
197900 CGATGGCAGA
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.22, C:0.37, G:0.15, T:0.26
Consensus pattern (30 bp):
AGCTTACCTTAGCCCAACCATACGTCCTAC
Left flanking sequence: Indices 197335 -- 197834
GAACTTCTGTCCTGTCGTATTGTCCTTATTGAGTTATCCTAGCAAGAATCCCCCATCGACTAAGA
AAGCTATGTATTGATTACTATAAGAAGGAAGCCCCGCTATCTATCTCTGCTTTCCTGTCTTCCTA
TCTTTCTGCCTATCTGTCTTTCCTCTTTCTGCTTTGTCTTTCTCGCTGTCGGTAGAGATTAGTAT
TTCCTAAGTTGTCTGAGGCTGAGCTTCCCTACTTCTGTACTTGGTTGCCTGTCTCTAAGCTGTAC
TTCCTTGCCTGTATCTAAGTAGGTACGTCTCGCTTCGCTCCTCATTTCCTTGCCGTCTTTCAATT
CTGACTATTGAGAAATATCCATGAGTCTGTCCCCCCGCGAGTAAATAAGCTAACCTTGGCTTCCC
CTTCGACTGAGGCGGACTTGAGCCTAGTTATTGACTTCCTGAACCTTAAACAAGTTATCAAAGAA
GTGGATTTGCTCACAGCTTCTCCTTCGTTCCTAGACCAACAGCTT
Right flanking sequence: Indices 197900 -- 198399
CGATGGCAGAATGATTGACCGGGCCGCTTGGCCCACTTGAACTAGCAGCCCTACCTGCTGCCGTA
CCTGTCTGTGAATGAACTTCTGGATATTCACCTACCAACACAACCCGGGCCACGCCGGGACTTTC
TTTATCCATTCAATCAAACTAGGGAAGTGGTTAGAGAAGCAGTAGCTGCTATGCGAGTTAGATCG
GTCAAGTTTTGATGTAGATATAGTCGCCCTCTTCTCTATGTCATAAAGTCGCTTATAATTAATGG
TTGTTCACTTCAGATGTGATACGTTGTTCACTTCGGATGTGGTGGATGAACCCTGATCGATGCGG
TTCAGGCCGTTTGATTGAACTACGCTAAGCTGAGACTTTCTCTTGTGCTTCGGGCGATCATAGTG
GATTTGATAATAGAAATAGCGAGCGGTCCGCCTTCCTTCTTCGCCTTTTCAATTTCAAGTAATGA
TAGGACTCATGGGCCAAAAGGATATTGTCTTGAATTTGTCTTTCA
Found at i:224997 original size:18 final size:18
Alignment explanation
Indices: 224976--225018 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
224966 CAACCTTGTT
224976 GACTATGACAACAG-TCGC
1 GACTATGA-AACAGATCGC
224994 GACTAT-AAACAGACTCGC
1 GACTATGAAACAGA-TCGC
225012 GACTATG
1 GACTATG
225019 GCAGGGCGGT
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
16 5 0.23
17 1 0.05
18 16 0.73
ACGTcount: A:0.35, C:0.26, G:0.21, T:0.19
Consensus pattern (18 bp):
GACTATGAAACAGATCGC
Left flanking sequence: Indices 224476 -- 224975
TACCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTCGGA
GACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTAC
CTTAGGACAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTTCCATTCAAAGCTTATAACACTTCT
CCTTCCGACCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCACTTAGCAGAGT
CCTGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCCTAATCAAAAGATAGGA
GAGCACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCTTCGACATGGTTCTCTCAAG
CGCCCTAGTATACTCTACTTGTTCACCTGTGTCGGTTTGGGGTACGGTCAGTTCACCGGGAGGAT
CGCCCTCCCAATTCGAAGTTTTTTCCTGGAAGTTTCAACCTTGTT
Right flanking sequence: Indices 225019 -- 225518
GCAGGGCGGTACGCTCTGCTCTCTCGCGACCCCTACTCTAATCAAAAGACTAAGGGCCCCTTAGG
TCGCCAAACTACGACGAGAGTTTCGCCTTTTGAAGCGCCAGTCGCGTAGGGCGACCGGGCCAGGC
CGAGTCAGAAAGGCTTTGATGACTCAAGGTTCATATTAGGGAAAGGAGAGTGAGGGGAAGAGGGG
GCAGCCCTCGGCCCGATCATCCAATTCGCTCCAACAGATAGGCATGGTTCTGTAGTCAAAGCAAC
TTCGTCACTTTCGTGTACCCATCGGACGGCAGCCCTTTCGGGGGTTCCTTAGGGACCGATTCACT
CTGCGTAGATTGACTGAACGCAGAAAGCCTTCCACTGGCAGGCGATCGTGTTTTTCACAGGATTT
ATCGTTACTCATGTCAGCATTCTCACTTCTGATATCTCCAGGTGTTGTCACCAAAAACCTTCCCC
GATTGACAGAACGTTCCGCTACTGACACTTGAAAAAGAAGCTTTC
Found at i:279555 original size:16 final size:16
Alignment explanation
Indices: 279534--279567 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
279524 AAGTGTGCCC
*
279534 TAAGTGTAATCCTACT
1 TAAGTGGAATCCTACT
279550 TAAGTGGAATCCTACT
1 TAAGTGGAATCCTACT
279566 TA
1 TA
279568 TACTCTTTCT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.32, C:0.18, G:0.15, T:0.35
Consensus pattern (16 bp):
TAAGTGGAATCCTACT
Left flanking sequence: Indices 279034 -- 279533
ATCTAGGCAGCTACTCTCTAGCTTCCATCTATTCTTCCTTCTCTTATGGTACTTGAAGCCAAGTA
AAGGCAGCTTTCTGTTGAGTTATATTCTTTCAGATCTGAGATTTAGTCGTAGAGCCTGAGTTAAC
CAAACTAGTAATCTAATCAGTCATCTAATCTTAGGCTTCGCTACCGTACTTATCGTCCAGCAAGT
AACCCACCTTACCCCCCCTCAATCTCAGTAAGGAGTTAGGAGGGTTTCGGGCTAGGAGTTGACCC
AAGGCGTCTATTCAGATAGTAGTTCCCAAGTATGATATGAAATAGGAGGTAATAGAGTAAAGTCC
TTGTCCTACTCTAATACAAGTAAGTAGCTAAGGTTACCTTAATCCGCTGAAGCAAGGATTGGTAA
GCTCCGGAGCAAGAGTAACTGTAGTTGCTACGTCCGGTCCCGTAACTGCGGGCAGCTCGAGTTCT
AGTTCTTTACAAGACAGATGGGAACTGTAGCTAATAAGTGTGCCC
Right flanking sequence: Indices 279568 -- 280067
TACTCTTTCTACTATATTAGCATGTCGGGTTCCAAGTTATTAGTAGCTAGGCAGCTAAGCCAGTA
GTAGTTCAGTTCAGGTCGGGGCATGAAGCTACAGGTTCTATTTTCGGTTGTGAGACAGAGGTCAG
AGGCCCCCTGTTATATAGGTAGCCATGCGCGTTAATAGATCTTCTTCTATACTAGTAGTAGGAGT
AATGAGTGAATCGGTTTCTTAGGCAAGTTTTTGTTTCTTTATTAGAAGGATAAGCACGGTTATTG
CTCTTTGTCCCAACATGGAGCCGAGGTAGCTACACCGTTTGAAGTAGTTAACGAAGGGAAATAAG
TCCATTTGAGTGAAGATTGGATAGTTGCCCGCTCCTTAGGTCTGCTTTCATACGTGCTGGTGTTC
GTGTTCTGTTGGTTTTTCTGTTCTGTTGTGGGAAGGGGGGATTTTCGCATCTACAAGTTGAGAGT
GTGCTGGGGCAAGTGGGCTAACCCGAACTCCCTGTAAGGGGCTTT
Found at i:286783 original size:27 final size:25
Alignment explanation
Indices: 286748--286798 Score: 66
Period size: 27 Copynumber: 2.0 Consensus size: 25
286738 CTTTGAGTTG
*
286748 AAGGGGCTAGAGCAGCCACAATGAGCC
1 AAGGAGCTAGAG-AGCC-CAATGAGCC
*
286775 AAGGAGCTAGTGAGCCCAATGAGC
1 AAGGAGCTAGAGAGCCCAATGAGC
286799 TGAGGATGTC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 8 0.36
26 4 0.18
27 10 0.45
ACGTcount: A:0.33, C:0.24, G:0.33, T:0.10
Consensus pattern (25 bp):
AAGGAGCTAGAGAGCCCAATGAGCC
Left flanking sequence: Indices 286248 -- 286747
TGGGGGTTGATGTCCTATTCAAATATTCTTGGAGAGGAGTTGAACTCAAGATCAGTCACCCGACT
GACCGTTCTAAGATACCTCCTACTCCGGGAAACCAGCCCCCTGCCCTGGAAGAAAAGGAAGTGCG
TGAAACGGGAAAAAAAGATAGATGATAAATCCCCCCGGATGTAGTCGCGTAGTCTTTTTTTCTAT
GTCGCGCGAGGAACCGGGTTACCAAAGTCACGATCAGAAAGGTTGAAATCCAGATCATGAATCTG
GAAAGCGCTGGTTCGATCCCAGCTCGTGACAAGGCCTAAGCTGAATGTTATCTTGATCACCGGCC
AAGATTGGGTTGGAAGCCCAGGAACGTGCCGTTTAGACCCTATAAGGTCCCTTCCACCTACTTCC
ACTGACTTCGACTTTCTGCCCCTGGAAAGGCTGTCACAGCTTAAGGACTTCTGGTAGTCAACCCG
TTTCAGGGCAAAAAGTGACTAAAGGAACTAAGAAGCTTTGAGTTG
Right flanking sequence: Indices 286799 -- 287298
TGAGGATGTCCTTGAGTTAATGCAGTTCTTGAAGCTTTTGCTTTTTTCCTTTTAGGAGTGAGCAA
GGCATATAGAAGGCATACATCAATAAACCAAGGGGGAACGTTAAGACAACTTTAAGAATCCTCTT
AAAAAGGGCTTTAGGAAGGAGAACGTCATATAGAGTGCATCAAGCCATAAGCATGGGAGGCTTTA
TTAGCTCCCTTTAACACAACCAAATCCGCTTCCGTGTCCTCATGAGAGAGAAGCACGCGTTCTTG
GACTACCAGCTGAATGAAAAAACCTGCGATGTTGGCATTCTTTGGTCTTTCTCCTAGAGATGCCC
GCTTCGGTAAGTCGAAAACTGAAGGAAGGTGAAAGGCTAACCGCAACTTGAGCATATTCTATTAA
TTCCGGTTTCCAGAAGCATCATCTTAGAACATTGCAACGTGGGTCATATCGCAAAGCCGGAGCTT
ACAGCATTTACCATTAAAAGTAGGTATCGCACTTTCTCATCATTC
Found at i:309010 original size:21 final size:21
Alignment explanation
Indices: 308984--309046 Score: 126
Period size: 21 Copynumber: 3.0 Consensus size: 21
308974 AGAAAGGGTC
308984 CATAGGCTTCTCTCTCAAGAA
1 CATAGGCTTCTCTCTCAAGAA
309005 CATAGGCTTCTCTCTCAAGAA
1 CATAGGCTTCTCTCTCAAGAA
309026 CATAGGCTTCTCTCTCAAGAA
1 CATAGGCTTCTCTCTCAAGAA
309047 AGCGGGTCTT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 42 1.00
ACGTcount: A:0.29, C:0.29, G:0.14, T:0.29
Consensus pattern (21 bp):
CATAGGCTTCTCTCTCAAGAA
Left flanking sequence: Indices 308484 -- 308983
ATTTTCTCGTTCATGATCTCTAATCCTTTGAGTAGATTGGGCAGGGGTAAGACTATGCACATAGC
TTCGGTTCCGTCTTGTTTGCCAAGGAGATATGGTTGCTTTTCCTTCTTCAGTAGGCTTTCCCGCA
GGTTCGGTTACAGATAGGATACGCGGGTCAAAGGGAAGGCTTGAGTTCAGAGACGAAGTTGGCTT
TGAAGGGACAAACTTTCAGACAGTTCCTTACTTTCTATTCTCTAATCTCTCGCTTCCGACTCCTA
TATTGAAACTCTAAGGTACGAAACTATATATTTAGTCTCTGTCCCGGACTACACAAATTCCATAA
ACCCCGTGTTTTTTGATGCAAATTGTGTCAAGAGAGTAGTTTCCGCAAGATATTCCATAGGTGGA
TTTAAGCGGAAGATCTGCGTGATCTGATCTTTCTTGAGGACTAGTAACTGGTCCTGTAGCTAGAA
GTCCCCATGAGCTCCCTCAATTCCTATTGAGATTGAGAAAGGGTC
Right flanking sequence: Indices 309047 -- 309546
AGCGGGTCTTAGTGGGTAGTATAGTGCCGTTCAAGCGTACTCCCTGCGGGTAGGGTCTAATACCC
CTTATTGGCATGAGGAACTGGGCTCCCAATTCTTCATCCTCCTTTTTGAGCTGTAAGACCAGGCA
AGGGATCCCGCTTAGTGGGTTCGAGTTCAGTAACAGAACCTCCTAGCCTGCCCTTTTTTAATAGA
TATCTAGGGTTGTCGGCACCCTTCCTCTCCCTCTCCCTACCTTTGGTCGAGCTAGTAAACTTCCT
CAACTGGAGAGGGAAGAATAAGCTGCAAAGCTCTGCTGGTGAATAGCAGATGATGCTCGATTAGG
TATGCCAATCCGGCAGCTTGAAGGCGCGTGTCTGATGTTTCGGTAGGATGTTGCTATGTCCGCTT
TCAGCCCGTAAATCGAAGGCTGTTCTTCCCATAAGGGGGATGACGTTATAGGGTTCAAATTAAAG
AATCTTATAGGTGGAACTAGACATCGAATAAATATTCGTGCATCT
Found at i:349568 original size:2 final size:2
Alignment explanation
Indices: 349561--349591 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
349551 CGTGACCGTG
*
349561 TA TA TA TA TA TA TA TA TA TA TA TA AA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
349592 CTTCGATGCT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Left flanking sequence: Indices 349061 -- 349560
GGACCAACATCCAGCCGAGAGAGGGTAGCCTTTAGAAATAAACAGGTTGGGAGAGAACGCTTTGC
GTTTTCTTATCTTCTTCTCGCCCTAGGAGTAGCACAAAAAGAGGGATTAGCATTATTGACCCAAT
GATAAACCACTAACACCTTCCTCGTTGGGGCTCCGCGCACAGGGAAAACGCTCTAGCGACGGGAA
ACCGGCCACTAGTTACAAAGCTCCAATAAGGTATCGAGAGGGCTATCACAGTCAGGTGCGAAGCA
ATTACCCCCTATTTCTAAAGTACCCCTCTTCCTATTTAGGGGGTTGAGGCGAGAAATGGCTTGAT
GAACCGTTCCGTTCGCCACGCACCGGCCCCATTCACTTGCTTATCGTAGAGGCTGTAAGTACACA
GTGCTCCACAACTATTCATAGTATAGTGGGGTTGAAACACGAGAGTGCCCGCCCTTTCTTTCAAG
CAGGCCACTTTTTCCGGAACGCAGTCCGGGGTAACCGTGACCGTG
Right flanking sequence: Indices 349592 -- 350091
CTTCGATGCTGTCATTTCGAAATGTCCGCTTCAACCGCTGTTTCACCTCCCAAAAAGCAAAGTTG
GCTTGACGAGCGCAGATGTGAGGAAGCGGGAGCAATAAAACCAAAAAAAGCTTTCTTGTCCTTCT
ACTTAAGGGGCAAAGGGAAGCGCTTTTGCTACTGAGAAAGCGAACGGTCAGCGCGAAGGTTCAAG
ACTTAGCCGAGCGTTAGCGAAGCTAGATTCTCATAGCGAGGCGCTTCGAGTTAGCGAAGCGCTGT
AGTAGCGCCGAAGCCCTATGTTCTATAATGCTGAGCCAAGGACGCTCCGCCTTATCTATAGAAGC
AGTCAACTGAGTTCTGAACGAATTAGCTCCTTGGTAATGGCTTAATCTATAGATAGAAAGCCCTA
TGATTGGAAACTACCACGTTAGGTTTGGAGAGAGACGGGACCGGTTATATAATAGGGGGAGCAGA
TGCAAGCTTTTTCTTTCAATAGCCGGCCAAATGACTACAGGATCA
Found at i:355872 original size:51 final size:51
Alignment explanation
Indices: 355804--355900 Score: 151
Period size: 51 Copynumber: 1.9 Consensus size: 51
355794 TAATAGCAAA
*
355804 GGAATCTCAAGCCAAGGAATCGAATTTCTGAC-AAGGAATCTCAAGCCGCAG
1 GGAATCTCAAGCCAAGGAATCGAATTTCAG-CGAAGGAATCTCAAGCCGCAG
* *
355855 GGAATCTCAGGCGAAGGAATCGAATTTCAGCGAAGGAATCTCAAGC
1 GGAATCTCAAGCCAAGGAATCGAATTTCAGCGAAGGAATCTCAAGC
355901 TAATTTCAGT
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
50 1 0.02
51 41 0.98
ACGTcount: A:0.35, C:0.22, G:0.26, T:0.18
Consensus pattern (51 bp):
GGAATCTCAAGCCAAGGAATCGAATTTCAGCGAAGGAATCTCAAGCCGCAG
Left flanking sequence: Indices 355304 -- 355803
GGTAGATAGGAACCGAATTCAAAGGCTTGCATGTTAAAGATAGAACCAACGGTGGCAGAAGAGAT
TTGTGCAGGAGCTGGCGGAGAGCGGAAGATTCGAATCTCGATCCGGGGAGACGTTTCAACGTTAG
CTCCTGTAAGCCTGAGCAAACAAAGGTTGTAGTAGGGGCTTCCGCGACACTTTGATTAGTTCAAT
TAACCCAGCCTCAAGGACAGAAAGGGAGGGTAGGGTTTTTCCTTGATGAACCGAAGGAGGCCTAA
GCATTTTGAAAACCCATATCATTCATTGGTAAGCGTAATTGGTTGGCCCTGCCAACTATATGCAG
GTCTCTCGAGCCTTCCCTATTTCTCGATCGGTTCAATGCTTCATATTTATTCCACTCAAAGCCTG
AGCGTGGCTAGGGTTCTCCCCCACTTCATTAATATAGTATAGCGAGGTGTGGTATAAAGAATACT
GATCGTCCAGTAATGGGTAGCGACAACTGATAAATTAATAGCAAA
Right flanking sequence: Indices 355901 -- 356400
TAATTTCAGTGAAATCCCATGTTTTACTTCAAACTGAAAAAAAAGGAAAGACATGAATCACAAAA
ACTGGCTTACTCGATCATTGGATGATATGCCTAGAAAAGAGGAAGACAAAAAGGAACTAATAAGG
TTTTGGAATGAGTTTTACACTTATTTATTGAAAAATACTAACAAGAGTGGACAACATGGTAAGAG
TCACTCAGTTCAGTATAAGGAAACCGCCTTCGATATTTTGGAAGAAGCAAAAACAAGATTACCAT
TAAGTGTAGATGAATTAAGTGAGATCCAAAAGCAAATTGAGGAGATTACTATATGGTTCGATGAG
AAATCTATTTTTAGGTCAGCTTCCGACATAATCAAAATCTTAATCAGGGAAAATGAGGAAAGTGC
TAAGGATTTTCTCAGGAGAAGGCCATTCGAAAAGGATGATCTTGAATTGCTTTCAGAGTTCGGTC
AATATACGATTGAGGCATTAATAGTTCATGTACTAAGTATGTTTT
Found at i:355884 original size:20 final size:19
Alignment explanation
Indices: 355856--355894 Score: 60
Period size: 19 Copynumber: 2.0 Consensus size: 19
355846 AAGCCGCAGG
355856 GAATCTCAGGCGAAGGAATC
1 GAATCTCA-GCGAAGGAATC
*
355876 GAATTTCAGCGAAGGAATC
1 GAATCTCAGCGAAGGAATC
355895 TCAAGCTAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 11 0.61
20 7 0.39
ACGTcount: A:0.36, C:0.18, G:0.28, T:0.18
Consensus pattern (19 bp):
GAATCTCAGCGAAGGAATC
Left flanking sequence: Indices 355356 -- 355855
TGGCAGAAGAGATTTGTGCAGGAGCTGGCGGAGAGCGGAAGATTCGAATCTCGATCCGGGGAGAC
GTTTCAACGTTAGCTCCTGTAAGCCTGAGCAAACAAAGGTTGTAGTAGGGGCTTCCGCGACACTT
TGATTAGTTCAATTAACCCAGCCTCAAGGACAGAAAGGGAGGGTAGGGTTTTTCCTTGATGAACC
GAAGGAGGCCTAAGCATTTTGAAAACCCATATCATTCATTGGTAAGCGTAATTGGTTGGCCCTGC
CAACTATATGCAGGTCTCTCGAGCCTTCCCTATTTCTCGATCGGTTCAATGCTTCATATTTATTC
CACTCAAAGCCTGAGCGTGGCTAGGGTTCTCCCCCACTTCATTAATATAGTATAGCGAGGTGTGG
TATAAAGAATACTGATCGTCCAGTAATGGGTAGCGACAACTGATAAATTAATAGCAAAGGAATCT
CAAGCCAAGGAATCGAATTTCTGACAAGGAATCTCAAGCCGCAGG
Right flanking sequence: Indices 355895 -- 356394
TCAAGCTAATTTCAGTGAAATCCCATGTTTTACTTCAAACTGAAAAAAAAGGAAAGACATGAATC
ACAAAAACTGGCTTACTCGATCATTGGATGATATGCCTAGAAAAGAGGAAGACAAAAAGGAACTA
ATAAGGTTTTGGAATGAGTTTTACACTTATTTATTGAAAAATACTAACAAGAGTGGACAACATGG
TAAGAGTCACTCAGTTCAGTATAAGGAAACCGCCTTCGATATTTTGGAAGAAGCAAAAACAAGAT
TACCATTAAGTGTAGATGAATTAAGTGAGATCCAAAAGCAAATTGAGGAGATTACTATATGGTTC
GATGAGAAATCTATTTTTAGGTCAGCTTCCGACATAATCAAAATCTTAATCAGGGAAAATGAGGA
AAGTGCTAAGGATTTTCTCAGGAGAAGGCCATTCGAAAAGGATGATCTTGAATTGCTTTCAGAGT
TCGGTCAATATACGATTGAGGCATTAATAGTTCATGTACTAAGTA
Found at i:370511 original size:19 final size:19
Alignment explanation
Indices: 370487--370524 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
370477 GGAGTTTCCA
*
370487 GCAGTAACCCCAAAGGGTT
1 GCAGTAACACCAAAGGGTT
370506 GCAGTAACACCAAAGGGTT
1 GCAGTAACACCAAAGGGTT
370525 TCAGATTCCG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.34, C:0.24, G:0.26, T:0.16
Consensus pattern (19 bp):
GCAGTAACACCAAAGGGTT
Left flanking sequence: Indices 369987 -- 370486
CTCGTTCCTAGGAACTCAGTAACGTGGCCAGTAAGTCAGCGAGCATTGAGGCAGGCAGACAGATA
TTATTAACTGCTTTAAGTCGGTAAGGCAAGGAAGGCGGATTTCACCGATCATTCCTACTTGACGC
TTTGGACGAGTATTTTCAAAACCTTAGTTCACTATCATTAAGGGAACTTCTTGGATCGCCGCTTT
GAGTCTTGTCTTAAGGCGACGGAAGGCAGAAGAGGGAAAGTCGCTCCTTAAATACGAGGAGTTTC
AAGAACCCGGCTGATCAGTGTTCTGTTACTAATATGTTGATGACTTCGGCCAGTTCCTCGGTTAA
GTTGCTTAGCATAATTGGTAACTACATGGTGTTGCTGCTATGGCCCTGGAGAGAGATTCCTACTT
ATACCGGGCAGCTCTACCAGCACTAAATTCCCTTCTTTCCGACCAGGACGTATGTTTCTTTAGCT
TGTATATCCTCTTACCATGCAGAGTTATATGTTCAGGAGTTTCCA
Right flanking sequence: Indices 370525 -- 371024
TCAGATTCCGGACTGATCTCGTAGTCGGCTAGCTCATTCGAGCGTATCTCGTTTGGCCTCTTTTT
CTCACCCTTACCTTTCCATTTCAAGCTTCATATCCTACTAATAGCCCCCTTGTCGTTGAATCTCT
TGTAGAAACCACCATTGAATAAAATCAAAGGGTTAGTCTTCTTTGATAGAGGAAAGGTTGAATGC
TGCCCCCTTCCTCTGACCCCGAATCATTCTTTCAACCTTCGGCCAGGCGCCTAACTAACCTAAAA
ATTCGGAAGCTCCTGAAGATCTGACCGAAATCGGATTTACTTTTCGCGCCAAATTTGTTGAATGG
CCTAGGAGTGAAGTTCAAGGGCTTGGCTTTTTGGCTCAGATTCCGTATCGGCTGTTTGTTCATCA
AGCCTATTCTCGAGCCTATATCTACTCTCTTTTCTTTTAGAGGCGTACCTCTCCACGAGATCGAA
CACTTTACCAAGGATTGAATCCAAAAGCAAGAACTCGGTTGACAT
Found at i:374260 original size:14 final size:14
Alignment explanation
Indices: 374241--374267 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
374231 CAGCTTATCG
374241 TTAGAACGCTTTCA
1 TTAGAACGCTTTCA
374255 TTAGAACGCTTTC
1 TTAGAACGCTTTC
374268 TCGCGGGCAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.26, C:0.22, G:0.15, T:0.37
Consensus pattern (14 bp):
TTAGAACGCTTTCA
Left flanking sequence: Indices 373741 -- 374240
GCGGGGACAGAGAAGGATAACCTCTTTGAAAAGGACAGAGCCGCTTGGCCGCTACTTACACATCT
GGAGTTCCGGACTGAACTACGGAACGGAATTCAAGGGCTGGGCTTAGAAGCCCCTTAGATAGCAC
TTCCTCTATGAATAGAAGAGATTTTCTTTCTAGTAGAGCTCATCACGACCATCATAACCTAACTC
CAGGACTGCTACGGGCGCTGATCCTTCTATTTTCTATTCAAAGTTTCGTTTCTCCTGTTGAATGT
AGTTTCTCCGGAAGCGAGCTACTGACTAGCGGCAATCGGGACGGAGAGAAGACTAGAAAACTCCG
GAAGGCGCTAACAAACCGACTCTGCTTACCTACTGAGCCCTTGAACACTGAATCCTATACTATAG
AAATGGCATTTGACCCACTTCCTTCAGCTTGCCTAAACCGTCGGTAGCGAAGGGGAAGGGTCGGT
CTGTCATTCTGTCCTGAGAGTTTAGTAAGGACTTTCAGCTTATCG
Right flanking sequence: Indices 374268 -- 374767
TCGCGGGCAAGGATAGCTGTCCAGGGCTTTCGTCTCGGGGTAGCAACCGAATCTTAGAAAAGCGC
AGACGGGATTAGTGGGAAGGGCTTGGTCGATAGAGATTGCTTTTTCTTTAGAATCCCTATGGAAT
TGGGCGAGGAACCCTCTTCTACTCATTCATGGGCTAGGCTACTCAAGGGTTGCTGACTCTGATAT
TGATTCTCAAAGTGGGCATCCTCCAGCTGGGTCTCTAGTCTTTCTCATGTATTCACTTTCACTTT
CAGCAAAGAGGTTTCAAGCAATCGAAGGAGCAATCCGTGGCAGCTCAGCTCGCTTCTCACCCTAG
TTACACAGTCCTCTTTTTTAGGAAGAATAAGAAAAATCTTACCTCCGTTTTCAAGTTTCAGTCTT
TCCAGTGGGCAAGCGAGTTTCCCTCTTACTTAAGTAAGAGTAAGCTCCCATCGAAGGTAATTTCT
TATTCTCAGGCGAAGGGGAAGAACAAGCAGCGAAACGGTAATAGG
Found at i:375516 original size:18 final size:17
Alignment explanation
Indices: 375472--375529 Score: 62
Period size: 18 Copynumber: 3.2 Consensus size: 17
375462 TAGTCTTACA
*
375472 TTTAAGTGGTTTGACTTTC
1 TTTAAG-GGTTTGAC-CTC
*
375491 TTTCAGGGTTTGACCTC
1 TTTAAGGGTTTGACCTC
*
375508 GTTTAAGGGTTTAACCTC
1 -TTTAAGGGTTTGACCTC
375526 TTTA
1 TTTA
375530 TGTAATTGGT
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
17 6 0.18
18 23 0.68
19 5 0.15
ACGTcount: A:0.17, C:0.16, G:0.21, T:0.47
Consensus pattern (17 bp):
TTTAAGGGTTTGACCTC
Left flanking sequence: Indices 374972 -- 375471
TAAAGATTCAATCTCAAAGCGATACTAAAAATTAGGCAAAAGCAGAACTAGAACTCGAATTCTTC
GCCCCTCCCCTTGTACCAAGAAGCAAGTTCAAAACAGAAGGATAATGGGCTCGTCTATTATAAGT
TATTAGTTGACGGGGCTATCTCAGATATCTCGAGTAAGGAAACGGGCTTGATGGGGAAACATAAT
CGATTTCATAGGAAGACGTGCGCCAATCCACTTCTTTTCGAACGGTGAAGAAGGAGAATCGAATA
AGTCAAGGCGGTTCGCTTCCTCTGCTCTGGCAGCTCCTTCAGCTAGCAAGCTATGTTGGTTGGGA
CATTTCCAATCTCCACCGGCTATTAGTAATCGCCGTTTGTTCTCTCTTCTCGTTTGGGATCAAAA
AGAAATGAGTCCTTTGCCCTTCTCTGGGCCTCGTCCGCCATGGGCGAGTAGCTACATCTTCTTTA
CAAGTTAGCTCGCAAAGCGGGCTGGATTGAATCCATAGTCTTACA
Right flanking sequence: Indices 375530 -- 376029
TGTAATTGGTTAATTGAAAGGAAGGGGATGTAATGAGGTAAAATACAGTTGGTTAACCTTGTTCC
TCATTCCCTGGCTGCTCTGCTATTGTCTGATTTCTGGTCTTCTATTCTAATAACAAGTTCCATCC
ATGATTACTCTATTTCGAAAGTTGTGCTTACAGTCCGATCCTATCGTTCGAAATCATCCCATTTT
CGTAGGTCCGTCCTATTCCGACTCGATCGCTCCACCTTTCGAGGGTCGAGTTCGTGTTCACGGCT
CCGACTCGGGCTATCCTGTGACCAGTCGTATGCCGCTTCCGTTCCATACACGTACCCGTGGTTGG
CGTGCTCAAGCACCCCTTTGGTTTCGTGTGAACAAGAATCCCATTTCTTCTGCTCTTCCGGGTAG
TCAAATTTATATCCAGGATCCGGATACAGGTGACAAAGCTGTGCTGACTTATGGCTTCTCTCGTT
GGATACCTTACGCGATCAGGAGGTCCCAGCTTCCGTTCGTGCTTT
Found at i:411800 original size:17 final size:17
Alignment explanation
Indices: 411778--411820 Score: 59
Period size: 17 Copynumber: 2.5 Consensus size: 17
411768 TGGGGAAGAG
*
411778 AGGAAATCTTTCTTTAT
1 AGGAAATCTTTATTTAT
*
411795 AGGAAATTTTTATTTAT
1 AGGAAATCTTTATTTAT
*
411812 AGGGAATCT
1 AGGAAATCT
411821 GTGCTTACTA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.33, C:0.07, G:0.16, T:0.44
Consensus pattern (17 bp):
AGGAAATCTTTATTTAT
Left flanking sequence: Indices 411278 -- 411777
AGGCTGGCTCCATACCCATGATTTAAGGCGGGCGGGGAAGAAAGACTTTCTCTTGAACCAAAACT
CAAGATGATCCGATCCGTGCTTCGCCCCGGAGAAATTCTCTCTCTAAAACCAAACCGATCTGATC
CACAGGTCGTTCTGCCAACCCATAGGCAGGGGAAGAAATCTCTGTAGTGTGCAGTCCCTAGCCTT
ATGGGGTGGTGAAGCAGAGCAAGCAGCCCTCGTTAAGATAGGAATATCTATTAAATAGATAAAAA
GACGCTATTTTCATTCAACTGTGCTTGAAAGAGAGAGGATATGATATAAGGTAAGCCCCAATTCC
ACTGAAAGATTCAATTCAGTCAGCTTGGCTTTTTCTCTAGTTTGCCTTTTTGTCTACCTTCTTTA
GTCAATGTCGCATTTCGAGTGCTTGGTTAGATCTCCTAATGTAATGAACGAGAAGATGCGGTGAA
TCAATCAGTATTAGCTAAGGAAAGCATTCTAATTCTGGGGAAGAG
Right flanking sequence: Indices 411821 -- 412320
GTGCTTACTAAGCCTTTGTTTGAAGGACCGGTCTGAAAGTGCAAGACTAGCTGGACCCGGACTGA
CTAATCGCTAAGAGCTCACCCCGAGTGGGATAACTCTAAGTACGGCATTCAGTAAGAAGTAAGCC
AAGTTCAGTGATCCTCGAGAATGAACTATCAGGCCTAAAGCCTAGACTAGGAGGAAAGAACTGAT
GACTCGCATCCCCTTAATCTGAAACTCTCACAACACAAGAAGGATGGAAAGTCGTGGAATTGATC
GAAGTTAGCCAAGTTCTCTTAGCCGTTACGTTAGGGTGACTCGAGAAAGCTTGAAAGGGAATTCC
GAGAGCCCTTAAGCTTCAAGCTATCCGGCTTCAAGCCGTGAAGGAGGAATCCGAGTTGCATCCTA
AAATAAGGAAGATCGTTCATCAGCGCTTTCAGTAACTAAAAGTAAATCTGGTGCGTAATCAAGCT
AATCTCATTCCTTAGGAGCTGGAGCAATAAGAGATGAAAGAGTTT
Done.