Specifications
==============

Sequence source file: "/mnt/biodata02/home/xyzhang/pmgdraw-test/test_set/outdir_mt3/NC_065228.1/NC_065228/Repetitive_sequence/123.misa.ini"

Definement of microsatellites (unit size / minimum number of repeats):
(1/10) (2/6) (3/5) (4/5) (5/5) (6/5) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              1
Total size of examined sequences (bp):           510346
Total number of identified SSRs:                 53
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	44
2	4
3	4
4	1

Frequency of identified SSR motifs
----------------------------------

Repeats	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	total
A	-	-	-	-	-	7	5		2			1				1	16
C	-	-	-	-	-	2											2
G	-	-	-	-	-	6	1		1								8
T	-	-	-	-	-	10	4	4									18
AG	-	1															1
CT	-	1															1
TA	-		1		1												2
AAC	1																1
AGT	1																1
GTT	1																1
TTC	1																1
AATA	1																1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	total
A/T	-	-	-	-	-	17	9	4	2			1				1	34
C/G	-	-	-	-	-	8	1		1								10
AG/CT	-	2															2
AT/AT	-		1		1												2
AAC/GTT	2																2
AAG/CTT	1																1
ACT/AGT	1																1
AAAT/ATTT	1																1