123.fas.2.7.7.80.10.50.500.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NC_065228
Parameters: 2 7 7 80 10 50 500
Length:  510346

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49742--49846	30	3.5	30	100	0	210	12	38	12	37	1.81
64874--64919	22	2.0	23	87	4	67	17	23	15	43	1.87
73844--73893	25	2.0	25	88	0	73	14	26	20	40	1.90
74115--74179	30	2.2	30	85	0	94	21	36	15	26	1.93
97399--97440	21	2.0	21	100	0	84	33	0	23	42	1.55
101218--101247	14	2.1	14	93	0	51	46	13	20	20	1.83
104160--104197	20	1.9	20	89	10	60	31	34	10	23	1.89
131046--131092	22	2.2	21	85	11	60	4	23	4	68	1.26
136319--136356	19	2.0	19	94	0	67	34	23	26	15	1.95
140068--140094	14	1.9	14	100	0	54	25	22	14	37	1.93
141292--141349	18	3.2	17	80	9	62	17	15	20	46	1.84
158242--158303	30	2.1	30	100	0	124	24	32	9	33	1.88
158251--158316	30	2.2	30	86	5	89	28	33	12	25	1.92
188407--188461	17	3.0	19	79	15	62	34	3	23	38	1.73
207456--207534	39	2.0	39	95	0	140	21	26	18	32	1.97
222497--222658	25	6.5	25	100	0	324	27	16	40	15	1.88
231842--231885	22	2.0	22	86	8	63	47	4	18	29	1.68
233461--233488	14	2.0	14	100	0	56	28	14	14	42	1.84
301371--301455	22	3.5	22	71	20	80	28	24	29	17	1.97
338973--339042	36	1.9	36	91	5	115	12	32	35	18	1.89
343202--343249	21	2.3	21	88	0	69	10	18	18	52	1.74
348824--348920	51	1.9	51	89	4	151	17	25	21	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
364400--364434	17	2.1	17	94	0	61	25	20	22	31	1.98
405022--405084	21	3.0	21	100	0	126	28	28	14	28	1.95
410340--410382	18	2.6	16	82	10	52	25	32	20	20	1.97
413393--413464	31	2.3	31	100	0	144	11	41	11	36	1.76
455058--455097	20	2.0	20	100	0	80	20	40	15	25	1.90
461825--461867	18	2.4	18	81	18	54	18	20	25	34	1.96
463248--463289	21	2.0	21	100	0	84	52	23	19	4	1.65
490068--490107	21	2.0	20	90	5	62	42	25	10	22	1.84

Tables:   1

The End!