Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_043908
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 179081
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.28
Found at i:14251 original size:27 final size:27
Alignment explanation
Indices: 14169--14259 Score: 74
Period size: 27 Copynumber: 3.3 Consensus size: 27
14159 GAAAAGCGAT
* *
14169 TATATAAACGAAACTTCAGTTTCTGCA
1 TATATATACGAAACTTCAGTTTCTGTA
* * ** * * *
14196 TATGTATATGCTATTTGAAGTTATATGTA
1 TATATATACGAAACTT-CAGTT-TCTGTA
14225 TATATATACGAAACTTCAGTTTCTGTA
1 TATATATACGAAACTTCAGTTTCTGTA
*
14252 TATGTATA
1 TATATATA
14260 TGCTATTTCC
Statistics
Matches: 45, Mismatches: 17, Indels: 4
0.68 0.26 0.06
Matches are distributed among these distances:
27 22 0.49
28 8 0.18
29 15 0.33
ACGTcount: A:0.34, C:0.11, G:0.13, T:0.42
Consensus pattern (27 bp):
TATATATACGAAACTTCAGTTTCTGTA
Left flanking sequence: Indices 13669 -- 14168
GGCTGCATCCACCTCGTTCTTGATGGTTTGCCCCTAGTCGAGTCCTCCATCGAATAATACAACGC
TTAAATCCGGTAGACATTCGCGGCTGCTGGATGATCGCCGATGTGAGCTGTCACATAACCCCGAT
CTACGAAGTGTTCCACAAATTGCTTTGTCATTAAAAACCTCGAAGGAACCGCAAAGGCTATAATT
AAGCCTAGAACGTATCAACTGCAAACTGCGCAGACTATCCATGAATAAATGAAAGGCTCGGAAAA
GTCCAGTACGCGCTGTCGTTCCGCGTACGGGGAGAAAAACATAAAGGTGTACGATACGCGGCTCG
GGCACTCCGAAGAAATGAGTAACTTTCAAACAAAATTTTAGGGTAATCACATAGGTCTAATAAAC
GCGGATTAGCACATAAACGCCTCTGACTGCTGCAACTAGATAGTAACTTCGGCGGCTTCTTTCCA
TAAATTCTTTTGACGTGCACCTCGACAACGAATGTGAAAAGCGAT
Right flanking sequence: Indices 14260 -- 14759
TGCTATTTCCAATTATTTATCTGTATACGAAACTCCAGTTTCGTGTATTCTATATGATATAACAA
GTCCTCCATGCTATGCGTTATGCCGCACCCCGCGACACGCCCCCGGCCGTCTTCTTCTGGGAACC
AATAACACGTAAACTATGTGAAACTGGAGCGAATCAATATACAAAAAACACGACGAATTTCCTCC
AGAATTGTTTTTAATACAAAATGCATTATATTTCGTCGTGTGTTGGACTTGATAAAAACCAGGAA
AACGCAAAGCAAAAAAAAATATTTTTTGTTCGTTTTATTCCCCCTTTCTCTTTCAGCCTCCATTC
GCGATGCGAATAAAGCGGGAGAGAAGAAAGAAGCAAGCTTCTCTGGAATTCACTCTTTTTTTGCG
AAGTGGTTAGTAATGTGCCGCATTCTTAGCTCAGTTGGATAGAGCAACAACCTTCTAAGTTGAAG
GTCACAGGTTCAAATCCTGTAGGATGCGTAAAGTGCGCAATGAAT
Found at i:14314 original size:54 final size:56
Alignment explanation
Indices: 14169--14315 Score: 185
Period size: 56 Copynumber: 2.7 Consensus size: 56
14159 GAAAAGCGAT
* * *
14169 TATATAAACGAAACTTCAGTTTCTGCATATGTATATGCTATTTGAAGTTATATGTA
1 TATATATACGAAACTTCAGTTTCTGTATATGTATATGCTATTTCAAGTTATATGTA
14225 TATATATACGAAACTTCAGTTTCTGTATATGTATATGCTATTTCCAA-TTAT-T-TA
1 TATATATACGAAACTTCAGTTTCTGTATATGTATATGCTATTT-CAAGTTATATGTA
* * * *
14279 TCTGTATACGAAACTCCAGTTTCGTGTAT-TCTATATG
1 TATATATACGAAACTTCAGTTTC-TGTATATGTATATG
14316 ATATAACAAG
Statistics
Matches: 82, Mismatches: 7, Indels: 6
0.86 0.07 0.06
Matches are distributed among these distances:
54 29 0.35
55 6 0.07
56 45 0.55
57 2 0.02
ACGTcount: A:0.31, C:0.14, G:0.13, T:0.43
Consensus pattern (56 bp):
TATATATACGAAACTTCAGTTTCTGTATATGTATATGCTATTTCAAGTTATATGTA
Left flanking sequence: Indices 13669 -- 14168
GGCTGCATCCACCTCGTTCTTGATGGTTTGCCCCTAGTCGAGTCCTCCATCGAATAATACAACGC
TTAAATCCGGTAGACATTCGCGGCTGCTGGATGATCGCCGATGTGAGCTGTCACATAACCCCGAT
CTACGAAGTGTTCCACAAATTGCTTTGTCATTAAAAACCTCGAAGGAACCGCAAAGGCTATAATT
AAGCCTAGAACGTATCAACTGCAAACTGCGCAGACTATCCATGAATAAATGAAAGGCTCGGAAAA
GTCCAGTACGCGCTGTCGTTCCGCGTACGGGGAGAAAAACATAAAGGTGTACGATACGCGGCTCG
GGCACTCCGAAGAAATGAGTAACTTTCAAACAAAATTTTAGGGTAATCACATAGGTCTAATAAAC
GCGGATTAGCACATAAACGCCTCTGACTGCTGCAACTAGATAGTAACTTCGGCGGCTTCTTTCCA
TAAATTCTTTTGACGTGCACCTCGACAACGAATGTGAAAAGCGAT
Right flanking sequence: Indices 14316 -- 14815
ATATAACAAGTCCTCCATGCTATGCGTTATGCCGCACCCCGCGACACGCCCCCGGCCGTCTTCTT
CTGGGAACCAATAACACGTAAACTATGTGAAACTGGAGCGAATCAATATACAAAAAACACGACGA
ATTTCCTCCAGAATTGTTTTTAATACAAAATGCATTATATTTCGTCGTGTGTTGGACTTGATAAA
AACCAGGAAAACGCAAAGCAAAAAAAAATATTTTTTGTTCGTTTTATTCCCCCTTTCTCTTTCAG
CCTCCATTCGCGATGCGAATAAAGCGGGAGAGAAGAAAGAAGCAAGCTTCTCTGGAATTCACTCT
TTTTTTGCGAAGTGGTTAGTAATGTGCCGCATTCTTAGCTCAGTTGGATAGAGCAACAACCTTCT
AAGTTGAAGGTCACAGGTTCAAATCCTGTAGGATGCGTAAAGTGCGCAATGAATAATATATACCA
ACGGTACGTCCTTCTACTTGTTTAGTTAGTCCAAAGGAGCCACGT
Found at i:16741 original size:2 final size:2
Alignment explanation
Indices: 16734--16765 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
16724 GCATAAATAA
16734 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
16766 CTTTTTTATA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Left flanking sequence: Indices 16234 -- 16733
AAGTATTAAAAGCCTCTTGGGCGAGTGCCTGGCCATAGGGTTCGGGTTGAGGCCTGGGGGCTCGG
GGAGGAAGGTGCGTAAGCACTTTTTTCGTCAAAAGGATAAAAAATTTTTTTATTTCGTTTTCCAT
CCCCTCTCAACGAAAATAGCAAGAAAACTTCAACGAAAGCTAGTCTTTGATTGATTGCGAATTGA
TAAACAATCGCTTGATGCTTGATTACTAGCGTGTTATACTGACTGTACGAGGCCAGACTGCGGGA
CTGCGACCACGATGTTGACTGACACAGTACTTGGCGAGAAACTGTAACGAAAAAAATATATATAG
ATTTTTATGCCCGTAGGGCGTAGCGGAGGTTTTATTTGAGTGAGATCTAGAGACGTTAGGGGGGG
GGGGAGGGCAGTTTTATGGCACGAACGCCTAATAACGCAATACGCTAGTCATGCGGCTATTTACG
GTGCTTTATACCGCAGCTTGAGCTAATAGGATGAAGCATAAATAA
Right flanking sequence: Indices 16766 -- 17265
CTTTTTTATATTTATTTTGCAGCGCGTATACGACACGTAGTGCTTAAGAATAGCCAACTAGTGCT
TGTAGCTCAATTGGATAGAGCACCAAACTACGGATTTGGGGGTTGAGAGTTCGAATCTTTCCAAG
CATGGGCCTATCCATCGGATTGTACTAAAAGAATACGTCAGATAAGTAGAGAGTAACTAGCTCCA
ATCAGACGTTCTCTAGTTCCGCCCCTGCGGAAAAGGCTACGAAAAAAAAAATATATATACCTACG
TCCCCCGACTAATGGCTTAAGCACACCGTGCTCTTGTATTGTCCGACTATTCTAGATTTTGACTC
GTGGCGCCAAGAGAAACATGGGTTTCCAAATCGTAAATGTTCCGCCCCCCTGGTGTTAACTATCG
CCAGTTTGGTAATTTTCCCACACATGTGGCGGACTGCTCGCAGGTACCACTAAAGCCTGGTGGCT
TTACCCCAAAATTCGGTATAGGACTAGATATGAGTGTTGGATCAC
Found at i:36318 original size:21 final size:21
Alignment explanation
Indices: 36293--36338 Score: 83
Period size: 21 Copynumber: 2.2 Consensus size: 21
36283 AAATGATAAG
36293 AAGTCTGAGCTGGATAAAGAA
1 AAGTCTGAGCTGGATAAAGAA
*
36314 AAGTCTGAGCTGGATAAGGAA
1 AAGTCTGAGCTGGATAAAGAA
36335 AAGT
1 AAGT
36339 TCGAGTACGA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.41, C:0.09, G:0.30, T:0.20
Consensus pattern (21 bp):
AAGTCTGAGCTGGATAAAGAA
Left flanking sequence: Indices 35793 -- 36292
AGTAATGAACTCGTAAGTGTTTTAGCAAAAATAGTAACTGTGTTTATAATAATCTACTATCGATT
AAGACGCGATTTTTTTGTGTTTCAAATCACCGAAAATTCACAAAAAATAATAACGTGGGATTTTA
TATTGAGTCAGCTCCGGGGTGCTATTCAGCAACAGTCGGCCGGCTACAAGGATAATATTGAAGAG
TTTATAGGGCCTTTTTTTGTAAATAAACTATCAAACAAATCCTCAGTCAGTGACCTTCCCGTTTT
TTACAAGGCCTTATTATGCTTCAGTTGCAGGAGAAGAACCCGGGATCTGCCGCTGGGGCCGGTAA
ATCCGCCGCGGCGGGACAATGAGCAACTGATTGGGTCTATTAAAAGGAAACCCGTCTATTGCTGT
CATTGTAGGCGGGGTTTTTCGGTTATAAAATATATGGCAATGAGCGTGGAAACGCTCGAAAAGAT
AAAGCCCTGGACCAGAAAGATGAAGAGCTCGCCCGAAATGATAAG
Right flanking sequence: Indices 36339 -- 36838
TCGAGTACGAAAAGTTGAGAAAAAGGGAGGCCATGATCTTAACGCCCCTGAAAAGACTCCGGAGG
ATCCACAGTCGGAATTTCTTCAAAAGCAGGCTTTCAGCCAGGCTCGTAACAAAGGCCTTTTTGAG
CCTACGTTTAATATCTTCGATTTCTTTTTTTCACTTTCCCAAGAGCAGCGCTACGCGCCTGGCTT
TGTTGTTTTAGCCAAAACTAATCCTATTTTAGCTATTACCCTGTCTATTACTATGTTTTCATACG
CAGGAATACCCCCATTAGCTGGATTTTGTAGCAAATTCTATTTGTTTTTTGCCGCTTTAGGCTGT
GGGGCCTACTTACTAGCCCTAATAGGAGTAGTTACTAGCGTTATCAGTCGTTTTTATTATATACG
CTTTGTGAAAATAATGTATTTTGATACACCCGAAACATGGATTTTATATAAACCCATGGATCGTG
AAAAATCGTTACTACTAGCAATCACTGTCTTTTTTATTACTTTTT
Found at i:39158 original size:2 final size:2
Alignment explanation
Indices: 39151--39214 Score: 105
Period size: 2 Copynumber: 33.0 Consensus size: 2
39141 CCGAAAAGAA
39151 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
39193 -T A- AC AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT
39215 GCTGCGCCCG
Statistics
Matches: 59, Mismatches: 1, Indels: 4
0.92 0.02 0.06
Matches are distributed among these distances:
1 2 0.03
2 57 0.97
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Left flanking sequence: Indices 38651 -- 39150
AAGCAACTCCGACGGGTCCCAGATTGGATGTGACCGACATGGTACGGTATGCGGTTTGCTCCCTG
TTAGGCCTTTGGATCTCTAGCTATGAAAAAAAGCGAACAGGCGGCGTCGAAAGTCGTCCTATAGC
TTCTCTATCAAGCTATAGGGGACGGCGCAGCACGAAATAGTTTTAATTCACTTGGTCCACCTGGC
CAGGCTCCCCTGGCGAAACTTGCCAAGGATGCTCGAACTCTGGGCGATAAGTATAAACTCTGGAA
TCGTTAAAAAAGCAGAGCAACCCGACAAATACGAGATCATTTTATGCCCTGTCTTGCGTGGCTTC
ACTCAAAAGGCTGTTCAGCACTACAAAGGCTCCCCGCTCTCTGCGCATCGACGGAGAGCGCGGAA
TGGAATCATGCTTTTGATACGACGAAGAAACCTATTCCGTTTATTCGGAGACCCGGAGGCCCATG
AGGAAGACCTAGAGGATATAATCGGTTTTCGAAAACCGAAAAGAA
Right flanking sequence: Indices 39215 -- 39714
GCTGCGCCCGTAGTGAAAGAGGGACCAAAGTAAGTAGAGTTAGTGAGCCGTGTAATGGGCAACTA
TTTCGCACGGTTCGGAGGGCACTTCAGTAAGCCCTACATGGGCTGAAGTCTTGACCCCTATTCCT
TTTGATGATGCCAGAAGTCGTTTCGATATACGATTTTATCTTGTTTCTATTTTATTTATTATATC
CGATTCGGAAGTCACCTTTTTATTTCCTTGGGCAGTTTCTCTTAACAAGATTGGTTCGTTTGGAT
TCTGGTCTATGATGGTATTTTTACTTATTTTGACGATTGGATTTGTATATGAATGGAAAAAGGGC
GCTTTAGATTGGGAGTAACTCTTCATTCGCGAAAGCGAATGGAGTGGAAAGAAAAAATATAGGCC
CGTAGGGCTGAAGCTCTCATCGCTCTCTTTCTCCCTCTCCGGACACTTTTTTGGTCCAAAGGACA
CGAGACCTGCCGGGTATCGTGTGCGTCGTCAAGCCATATCCGGCC
Found at i:58208 original size:53 final size:53
Alignment explanation
Indices: 58118--58237 Score: 154
Period size: 53 Copynumber: 2.3 Consensus size: 53
58108 CCTTGGTCCC
* * *
58118 AAGGGCCGAAGACCGGAAATGGCTTGACGATTTCCGCACACGATACTGGGAAG
1 AAGGACCGAAGACCGGAAATGGCTGGACGATTCCCGCACACGATACTGGGAAG
* * *
58171 AAGGACCGAAGGCCGGAAATGGCTGGTA-GATTCCCGCACACGATATTGGGGAG
1 AAGGACCGAAGACCGGAAATGGCTGG-ACGATTCCCGCACACGATACTGGGAAG
58224 AAGGACACG-AGACC
1 AAGGAC-CGAAGACC
58238 CAAGGGAGAG
Statistics
Matches: 58, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
53 55 0.95
54 3 0.05
ACGTcount: A:0.31, C:0.23, G:0.33, T:0.13
Consensus pattern (53 bp):
AAGGACCGAAGACCGGAAATGGCTGGACGATTCCCGCACACGATACTGGGAAG
Left flanking sequence: Indices 57618 -- 58117
AAGCACTTCGTCTATAGGCATTGTAGAAAGAATCGAATATGACCCAAATCGTTCGTCTTGGATTG
CTTTAGTACGATGGATCGAAGGGTTTCTACGCCCTGGAAAGCACCCGGCTAGAGCGAATAGTCGA
AGAGAAAAAAATATGTTATTTTTCGGCCTCTTATTCTCGTTCTCTTCGCTGCCTAGACAAGCTCG
GGGAATAAAATACGAAAAAACGAGGCCCTCCGGGCCTTGCGGGCAGATACTGGAAAGTTCCTGGG
TCTTAAGGACACGAGACCTTAGGGCCAAAAAAGTGGCCTTAAGACCTTTGGGTCTTGGTTTCCCC
AGCGTAGCAGTAGCTGGGGCAAAGCCCGCTTTCTTCGCTTTTCGAGGCCCTTCCTCCCTAACAGA
GCGCCTGTCGGCCCTCAGGGAAGAAAATACGTTCTCTCGAAGCGAAGGCCAAAGGTGGAGAACGC
ATAGCGGGGCGCCGAGAATAAAAAGCCTAGTACTCCCTTGGTCCC
Right flanking sequence: Indices 58238 -- 58737
CAAGGGAGAGGCACGCAGTGCTCGACCCTTCTTTCTACAAGCCCGAACACGCTCCCCGCGCACTC
CGTGCCGTCGGGCCTTCGGGTTCGGGGCGAGTGCTACGCACCTCCGAGCCTTTCACTTATATATT
AGCCAGTGAAAATTTGGAAGCAGGCAAGACGGTGATGAATTTTCATTGGTCTAAACCTTCGACCC
CGTTAAACGACCATCAACCTTCCCATAAAAATGAACCTTCGGGCCTTAGGGTGGAGACCGCGCGA
GATAGCCAAGCTTGGCTACACGGAGACTACGCTTCTAGTGAGAATAAATACATACTTGATTCATA
TTATCAAATGGTCGGAAATTGCATACCATTAGCCAGAATACCTATAGGCACGTGGGTACATAATA
TTGAAAGGAACCCAGGTCAAGGCGCAAAGTTGACTCGAGCTGCGGGAACCTTCGCTCAAATAATT
AAGAAAGTTGAGAATACACCACAATGTATTGTGCGGTTACCTTCG
Found at i:75365 original size:2 final size:2
Alignment explanation
Indices: 75358--75388 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
75348 GAAAGAACAA
75358 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
75389 CATTTATTTA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Left flanking sequence: Indices 74858 -- 75357
AAAATAAAAAAAAGATTTTTTCTTTCGCTAATCGGCACAAGGGAAGGGGCTTAAGCGTCTGCTAT
ATCTTAGCAGATCGGATCCAACCAAGTCCTAAAGTAAGGCTCCCAAGGATCCCGGACGGGTCAAT
ACACGGAAAAAGAATATTTGGGCTGACGTGGATCTTTGGATTTTCAGATTTTGGAAAAAAAATAC
GCTACGCGCCCCCGTTTCGGAAATGCACCATGTTCGGGGTCTCAAGGACGGGCTCATATAAGAGA
ATGTTTGGTTTTATTCCCTCCCACTTGAATCGCGCATGATCGCTATAGTGAGAAAGCAAGTTACT
TCATGTTGCTCACGCCAGGCCCACATAGGTCACTGGAAAAACAAGCCAAGACCTTGCGACAGAAG
CAAATCCAAAGGAAGGTTGAATCGGAGAGCCGTATGATGGGCGACCATCTCGTACGGTTCGGAGA
GGGCTCGAGTACCAATGCATTCAATATGTGTCTGGGAAAGAACAA
Right flanking sequence: Indices 75389 -- 75888
CATTTATTTATCCACTCTATTCAATTGCATGAAGGGTTAAGCACAAAAACATGTGCTTCGCCTCT
ATTTTTCAAATACGAAGTATACTTGGGAGAGGCAGGATTCGCCCCTCCGTAGAGTAGAAAACCTT
CGGCGGATTTACAGTCTGTCGCTTACTCGGCCACTTTCCCTATGATAAGTAAGCTTCTATTTTCC
GGTGCCACGGGACTCTGGCGAAAAATAGGTCAATCTACGCGTGTAGCGTTGTTCCTATAGACTAA
TCAAACAAGTAGAAGGATGTACCGTTGGTATATATTATTCATTGCGCACTTTACGCATCCTACAG
GATTTGAGCCTGTGACCATCAACTTCGAAGGTTGTTGCTCTATCCAACTGAGCTAAGGATGCGGT
ACATTACTAGCCACTTCGCAGAAAAAGAGTGAACTCCAGAGAAGAAAGAAGCAAGCTTCTTTCTT
CTCTCCCGCTTTATTCGCATCGCGAATGAAGGCTGAAAAAGAAAG
Found at i:94236 original size:15 final size:15
Alignment explanation
Indices: 94216--94247 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
94206 ACTCGTTTCT
94216 ATGATAGCATATGCC
1 ATGATAGCATATGCC
94231 ATGATAGCATATGCC
1 ATGATAGCATATGCC
94246 AT
1 AT
94248 TACGTCTTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.34, C:0.19, G:0.19, T:0.28
Consensus pattern (15 bp):
ATGATAGCATATGCC
Left flanking sequence: Indices 93716 -- 94215
AAGGTAAATACTTATTTGGCTGGGTCCTCTGGCCGACTCGACGATTTCCGCCCCGAAAGCCTGCC
GGCCTTGGGCTTTCGGCAGAGGGCCTTCGGCTTCGGCCTTGGGCCTTAGGCCTACTGCTTGTGGC
CCTAGCCGGCCTAAGGCATGTAGCCAGCCGGCTGCCTCGATTTTTTACAAGCCCTCCTGCATTTA
AAGCTCGCCATAAGTTGATATTTTCATTTGAAATAAAAGCAAAAAAAGGGAGTTTACTATATGAA
TTTGTACTTTTTCATCCGGTTACCCATTCCGGTTATATCGCCCAAGCGAATCCCCTGGCCCATCC
CTATTTCATAGCCCGGTCACGGCAAGCATGGTTTTATATTTAATAGATCACTGGGTCGGATTCCG
CTTTTTTGTCCTTTCGCAAAACTAGATTCTTTCAATACTATTTGTATTATTGCCTTCGGCTGTAG
GAATGGTTACGGGACAACTATTATGGGAGATTTATACTCGTTTCT
Right flanking sequence: Indices 94248 -- 94747
TACGTCTTTATTTGTTGAACCCGGGGAACGAAATGAAGTTATTCATATATATAGCATCAGTTTAC
TATATAAGACTCAGGTATAAAATTCTGAATGATAATCAACTCCAATTTTATAGAGCTTATAAGGA
TTCTTGGGGCGCAGGCGGTTTGAACGATGCCAACCGCCGCACCCTTTAAAATCGTTCGGATTCAA
ATGGCAACCGGATACCCAAACGTAACATGGGGAGCTGCGGGCTAGCAAACGCAGCGCCCTGCCCC
GGAAACATTGCCAGCCGCTACGGGTACGGGCGGACTAGCCACAGTTGTTGCTGGAGGGGCGGTCG
GCATTGCAACCACTAAGATGATCGCGGACTCGAACGGAGAAATCCATAAGTAAAAAATGGCGCTG
AAGGAAAACATAATTTGGCCAATATGGCGTGGCATTGGAGCTTAAAATGAACCCGTCCAAGCACA
CGGGGACAAGTTATCACAATTTGCTTGAGGACGCACGGGCAGAGT
Found at i:96010 original size:2 final size:2
Alignment explanation
Indices: 96003--96043 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
95993 GCTGCAATAG
96003 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
96044 CTTTATAGGT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Left flanking sequence: Indices 95503 -- 96002
CTAACATGAAGGAAGCATTGCTAAATGACTAAATTTCGCTAATATGACTAAATCCCGAGGATTTG
TAGATAAATATGTATAATTAATACTCCGGAATCCTCATCGCTAATGACACCTTCGCTAAATGACG
CATATTTAGCTAATATGACTAAACCTGTTGGGGATCTGTAGTATAATACGGAGAGGACCCTTAAT
TAATATGGAATTAAAGGGTCGGGAAGGTCATATATAATAGGAATCTATATGGGATATGTAAGAAT
TCCATAGAATTGGGAAGAGTTAATCAATTGAATTGGAATAAATAGAATGGATTAAGAAATAAAAG
AAATTCAAATATATATATATATATATATTTGCGTATAACGGAGGAAATGCATAAATAAAATAGAT
TATATTATTTATAGGAGAGACTATTAAATTCATGTTTATTCTTCGCCCATCTTCCAAAAGAAAAT
GAGCTACTATTTATCTTCTTCGAGAGAGAGGATGAGCTGCAATAG
Right flanking sequence: Indices 96044 -- 96543
CTTTATAGGTCAGGGGATATAGCCTTGACCTCTAACCTTTGAAGATACTGAGGGCCTGGATCCCG
GTTACCACGTTCTTGAGATCTGTTACATAGGCCTCTAGTTTTCCCTCGGCCGCCACTTCCATCGT
GGAAGTGACATAGGAACTCCTTCGGGTGGGGATCATGGCACTTCCCATAGAACCTTAGGGACGCT
TTCGCTAGGAGCCCAAACTGGACTGAAGATAGGAAGCATAGATCGGGGGTTCGGTCACGCGGTAC
GTACGGCCTGTAGGTCCAGCATCTCGTCCTTATGGAGTTTGTAAACGGTGTCCGCTATATTCCGA
AGATCCATAATTATATCTGGTTGTTGGTTGCAGGGCGGGGGACTTGGTTTTGTCGGACACCACAA
AACCGAAAAACTGTCCGACAAAACAAAGGGCACTTACGACCAACTCGGCGGAATACCTTTCAGTA
ACCTCTGGCAACTCCTTTAACTTATTGATGGAAATGCCTAGGCCT
Found at i:121975 original size:21 final size:21
Alignment explanation
Indices: 121951--121999 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
121941 CCACTGGTTT
121951 AGATGTGGCTCCTGGGCCTTC
1 AGATGTGGCTCCTGGGCCTTC
* * **
121972 AGATGCGGTTCCTGGTTCTTC
1 AGATGTGGCTCCTGGGCCTTC
121993 AGATGTG
1 AGATGTG
122000 ATTCCTGGTT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.12, C:0.22, G:0.33, T:0.33
Consensus pattern (21 bp):
AGATGTGGCTCCTGGGCCTTC
Left flanking sequence: Indices 121451 -- 121950
CAATCGTACATACTTTTGACCAGGGGGCTATAATAATGCGTTACACCTTTTTGACAGTCCGGGCC
CTTCAAGTGTTTCGCTATTGGAGGTATAAATCGTTTCCACTAAGGGTAAACAGTAGATTTTGACA
AAACTTTTACCTTAGAGCTATACTTGCCTGTGTTATAACCCACCAGCATTATTTGATTTTTAACC
AAAATGGTGGCCTCTACTTGATTCTGCATCTTTCTCATACTTTCTTTATTACGTTTAAAGGTTTC
TAAAGTATACCTTTTTTTCTTATTTACGCCAACTAAAAAATAATTACAGAAGCACTCGATATCGA
AATAGACTATGCGGTCACAAGGATCGAATGATGACATTCTAGAGATAGCTTTTGGAAGTTCGCTA
GTCCCTTCCATTGAGAATAATTCTTCGTTCTCATTCTTCTCATATGTAAACTGAAAGCATTATTC
ATTCGTGGCTTCAGCCACTGGCTCTGGCACAGCGGCCACTGGTTT
Right flanking sequence: Indices 122000 -- 122499
ATTCCTGGTTCTGTGGCTCCTGGTTCCAAGAACTTGACATCTGGAGTATGATGAGGCAGAACATA
CATGGCTTACCTTTTTAATTCAATTTGGGTAGGGTGAATTTATATAAAAACATCCCTCCGGGGCT
TATGACTACTATTATGTTTGACAAATCCCAATATTTTCTTTTTCAGCAGCTCCAGGTGCTTTGGA
TAAGATTGAGCTGGTAAATTTATAAACCAATTTTTATTTTTGATCCAAAAAACTCGCGATACAAC
CCAATATATGTAGTATATTTAGATTCCTTATATATGATTAATCCGATGATTTCGATTCCCTATTT
TGGCAAGTGCAACAGGCTGAGGCCCCTTGCCCTTGCTCTGGGATAGTCTGGTGCCCTTTTCGGTT
CTTTCAAGGGCCCGCGCCGATTTCCGACTGCCTGGCCTGCTGCTTGTTGACCGCGGCCCGGTGAG
GAGCCGAAGGCAAGGCCATGATGGGTAACACTATAGTACATAGGC
Found at i:122004 original size:21 final size:21
Alignment explanation
Indices: 121968--122011 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
121958 GCTCCTGGGC
*
121968 CTTCAGATGCGGTTCCTGGTT
1 CTTCAGATGCGATTCCTGGTT
*
121989 CTTCAGATGTGATTCCTGGTT
1 CTTCAGATGCGATTCCTGGTT
122010 CT
1 CT
122012 GTGGCTCCTG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.11, C:0.23, G:0.25, T:0.41
Consensus pattern (21 bp):
CTTCAGATGCGATTCCTGGTT
Left flanking sequence: Indices 121468 -- 121967
GACCAGGGGGCTATAATAATGCGTTACACCTTTTTGACAGTCCGGGCCCTTCAAGTGTTTCGCTA
TTGGAGGTATAAATCGTTTCCACTAAGGGTAAACAGTAGATTTTGACAAAACTTTTACCTTAGAG
CTATACTTGCCTGTGTTATAACCCACCAGCATTATTTGATTTTTAACCAAAATGGTGGCCTCTAC
TTGATTCTGCATCTTTCTCATACTTTCTTTATTACGTTTAAAGGTTTCTAAAGTATACCTTTTTT
TCTTATTTACGCCAACTAAAAAATAATTACAGAAGCACTCGATATCGAAATAGACTATGCGGTCA
CAAGGATCGAATGATGACATTCTAGAGATAGCTTTTGGAAGTTCGCTAGTCCCTTCCATTGAGAA
TAATTCTTCGTTCTCATTCTTCTCATATGTAAACTGAAAGCATTATTCATTCGTGGCTTCAGCCA
CTGGCTCTGGCACAGCGGCCACTGGTTTAGATGTGGCTCCTGGGC
Right flanking sequence: Indices 122012 -- 122511
GTGGCTCCTGGTTCCAAGAACTTGACATCTGGAGTATGATGAGGCAGAACATACATGGCTTACCT
TTTTAATTCAATTTGGGTAGGGTGAATTTATATAAAAACATCCCTCCGGGGCTTATGACTACTAT
TATGTTTGACAAATCCCAATATTTTCTTTTTCAGCAGCTCCAGGTGCTTTGGATAAGATTGAGCT
GGTAAATTTATAAACCAATTTTTATTTTTGATCCAAAAAACTCGCGATACAACCCAATATATGTA
GTATATTTAGATTCCTTATATATGATTAATCCGATGATTTCGATTCCCTATTTTGGCAAGTGCAA
CAGGCTGAGGCCCCTTGCCCTTGCTCTGGGATAGTCTGGTGCCCTTTTCGGTTCTTTCAAGGGCC
CGCGCCGATTTCCGACTGCCTGGCCTGCTGCTTGTTGACCGCGGCCCGGTGAGGAGCCGAAGGCA
AGGCCATGATGGGTAACACTATAGTACATAGGCCGCTTATGCGCT
Found at i:123264 original size:21 final size:22
Alignment explanation
Indices: 123230--123281 Score: 56
Period size: 21 Copynumber: 2.5 Consensus size: 22
123220 TTTCACTAGT
*
123230 TAAAGTAA-GAAAAA-CCACTAC
1 TAAAGAAACGAAAAATCC-CTAC
123251 -AAAGAAACGAAAAATCCCTAC
1 TAAAGAAACGAAAAATCCCTAC
*
123272 TACAGAAACG
1 TAAAGAAACG
123282 TATGAGCCAA
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
20 6 0.23
21 10 0.38
22 10 0.38
ACGTcount: A:0.56, C:0.21, G:0.12, T:0.12
Consensus pattern (22 bp):
TAAAGAAACGAAAAATCCCTAC
Left flanking sequence: Indices 122730 -- 123229
ATATACATCATCCCTTATTCGTACTCCTTCTATAAATATCCCCCCCCAGCTTTCCCTGCCTTAGT
AACTGAAAACTCTTCTTCCAATCCATGCCCGTATACCTTCCGCTACGCGCCTTTGGGACGGTTCA
CCCGAGTTTTCAAAGATAAAGATGTAATAGATACAGAAAATATGACATTGTCATCAAATATACAA
ATAGAACTCGAAGGAATGCCAAATACAGGAAGGGGGGGGGGGTAGGTGCCAGCAGCCCCGGCCTG
GCGGCTCGGTCAAGTCTAGAACTTTCGGGGCGGGCTCCGCCCTATAAGGACTAGGTCTGTATAGG
GCGGAGCGGATCGGTGCTTAAGTTGCACAAATTGCTGAGACGTCTAAATGCTTTCCTTGATAGCT
GGAAGTTCTTCAAAAGTATGAAATGCCGGAGGGCTTGGGACCATCCATTCAAGTGTCGTTGAATT
CTGTTCAACAGCCCAAGGACTTGGAGCACACTTGTTTTCACTAGT
Right flanking sequence: Indices 123282 -- 123781
TATGAGCCAAAACTACTAACGGCATTCCATCCAGCGTAAGCATCTGGATAATCAGGAATGCGACG
TGGCATACCTGCAAGCGGTTTTTTCCTTATTTCTCAAATGTTAATGGATTGTGACTAAATATTTT
TATTTTGTAAACTTCATCTGGAATTAGTCTTTCAGACGTTTCAGTGTGTTTAAATCCCAATGTTG
AATCAGTTCTTTCATTGGTATTAAGAACTGGTTCATAAAGATCGAAATAGTACTGTTCTCGAGCT
AAATAATCCTTTTCAGTAATAGTACCTGTTGAACCGACTCAATAATAACTAAAATTGTCATGACC
ATATTTCCAAATGGAATTATAAATATATCTGTTATCAGATAATTTAGAAGGGTTATAGTATTCAG
CAAGTCTATCGCTTAATTTATAACCACTACCTACATATTGTTTCCCATTAACTGAATTATGCCAA
AGATAGATTCCAGTTTCCGTTAGATAATCAGAAACGATTTGCTCT
Found at i:123264 original size:22 final size:22
Alignment explanation
Indices: 123239--123281 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
123229 TTAAAGTAAG
123239 AAAAACCACTAC-AAAGAAACGA
1 AAAAACC-CTACTAAAGAAACGA
* *
123261 AAAATCCCTACTACAGAAACG
1 AAAAACCCTACTAAAGAAACG
123282 TATGAGCCAA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 4 0.22
22 14 0.78
ACGTcount: A:0.56, C:0.26, G:0.09, T:0.09
Consensus pattern (22 bp):
AAAAACCCTACTAAAGAAACGA
Left flanking sequence: Indices 122739 -- 123238
ATCCCTTATTCGTACTCCTTCTATAAATATCCCCCCCCAGCTTTCCCTGCCTTAGTAACTGAAAA
CTCTTCTTCCAATCCATGCCCGTATACCTTCCGCTACGCGCCTTTGGGACGGTTCACCCGAGTTT
TCAAAGATAAAGATGTAATAGATACAGAAAATATGACATTGTCATCAAATATACAAATAGAACTC
GAAGGAATGCCAAATACAGGAAGGGGGGGGGGGTAGGTGCCAGCAGCCCCGGCCTGGCGGCTCGG
TCAAGTCTAGAACTTTCGGGGCGGGCTCCGCCCTATAAGGACTAGGTCTGTATAGGGCGGAGCGG
ATCGGTGCTTAAGTTGCACAAATTGCTGAGACGTCTAAATGCTTTCCTTGATAGCTGGAAGTTCT
TCAAAAGTATGAAATGCCGGAGGGCTTGGGACCATCCATTCAAGTGTCGTTGAATTCTGTTCAAC
AGCCCAAGGACTTGGAGCACACTTGTTTTCACTAGTTAAAGTAAG
Right flanking sequence: Indices 123282 -- 123781
TATGAGCCAAAACTACTAACGGCATTCCATCCAGCGTAAGCATCTGGATAATCAGGAATGCGACG
TGGCATACCTGCAAGCGGTTTTTTCCTTATTTCTCAAATGTTAATGGATTGTGACTAAATATTTT
TATTTTGTAAACTTCATCTGGAATTAGTCTTTCAGACGTTTCAGTGTGTTTAAATCCCAATGTTG
AATCAGTTCTTTCATTGGTATTAAGAACTGGTTCATAAAGATCGAAATAGTACTGTTCTCGAGCT
AAATAATCCTTTTCAGTAATAGTACCTGTTGAACCGACTCAATAATAACTAAAATTGTCATGACC
ATATTTCCAAATGGAATTATAAATATATCTGTTATCAGATAATTTAGAAGGGTTATAGTATTCAG
CAAGTCTATCGCTTAATTTATAACCACTACCTACATATTGTTTCCCATTAACTGAATTATGCCAA
AGATAGATTCCAGTTTCCGTTAGATAATCAGAAACGATTTGCTCT
Found at i:140173 original size:27 final size:27
Alignment explanation
Indices: 140143--140197 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
140133 AGGGATCCTT
140143 GACATAACCTTGTGTGTGTATTCCGTA
1 GACATAACCTTGTGTGTGTATTCCGTA
140170 GACATAACCTTGTGTGTGTATTCCGTA
1 GACATAACCTTGTGTGTGTATTCCGTA
140197 G
1 G
140198 CAACTCCCGA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.22, C:0.18, G:0.24, T:0.36
Consensus pattern (27 bp):
GACATAACCTTGTGTGTGTATTCCGTA
Left flanking sequence: Indices 139643 -- 140142
GGCACTACGTGCTCCTTTGGCTTTACAGGGTCCGGAGGAGACGAGACCCACATAAATTTACCCGA
AACACGATTGCTAGCTTGTGATAAACCAATATCTCTCAAAGAACATAAATATTACGTTATTGGAA
AATCTCTTTGTTGTCATTCAACGTACTAAATACCAGAGAGAGCGTATACGAATTGGCACGAATCA
TACCTATTAAGAAAATACGATACACGTATTTTTGAATCCGATTCACTAAATTAAAGACCCTGAAA
TGCAGTTTTACATTGTGAGAGATCCACGTAAGCACGGGCTGCGCAAAAAGATTGACGGACGGGGC
AGATATAAATAATGCCTACGGACCCATGAAACACTAAAGTTCCCACTAGATCTGAGTTGTTGGGG
TCAGGTGAAAAATTGGAGGCCACCTCTAGGGCTTTTAGAAACTTCCTTCATAACCATTGCCGAAA
ACGTAGTACCCCCCCGTGCAATAATATTACCCGCTAGGGATCCTT
Right flanking sequence: Indices 140198 -- 140697
CAACTCCCGATAACAAATCCGATATTACGGCCAAATTAGTTAGTTTACGTTTGACATTCCGTAGA
GTGACACTGTCTCCTGGCGAAATCTCATTATCATCTACGAACAAAATCAAATCCGAAAAATAATC
TACAAGAATTGTCCAAAATCTAGCCATTAATCCTATAAACAAATAAGAAAAGATAAACGCTCACC
ATATAAACAGTGAAGAAATAACACACTTGATTTTCGGTGAGCAATTATTATATAATGATACATAA
AAGGTAGTATAAGAAAAACCATAATACGTAATACAAAAAATGATATAAAGCACGCATAACCGAAC
GAATTGTGTCAAATACGTAAAGTGATCTAGTTGAGGCCGAAGATGTAGGACGTTAGTTCTACATA
ACATTTATTTTATCCCTGCAAGAGAAATGGAAAGAATTAGAATATGAGCGACTTCTATAGAATTT
TTGAAAATGCCCCCGGGAATCATAAAAGTTATATCTAGAACCGGA
Found at i:152017 original size:20 final size:20
Alignment explanation
Indices: 151972--152018 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 20
151962 TTTTTCATAT
*
151972 TTCATCCCTTATATATGATAA
1 TTCAT-CCTTATACATGATAA
* *
151993 CTCATCCTTATACATGATTA
1 TTCATCCTTATACATGATAA
152013 TTCATC
1 TTCATC
152019 AAACTTCGTC
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
20 18 0.82
21 4 0.18
ACGTcount: A:0.30, C:0.23, G:0.04, T:0.43
Consensus pattern (20 bp):
TTCATCCTTATACATGATAA
Left flanking sequence: Indices 151472 -- 151971
CCGATTTAATGACCAGTACAAGAAAAGCTAGCACTCATGGACCCCGACGGGCCAGGGGTCGGTAA
CGACTACAAATGAGAGGCATAATATACCTCCCTTAAAAAACGGAAGTTCTTCACGCATAGCTGAC
TTACCTTACAGAACCAGTGAAGCCTAGCCAAACCTTAACATTACGGCATAATTCTGCATAAGAAC
TATCCCAATAATTATACCAAGTGCAATATAAGGAGAAAGCTCTCTGGATATGACCATACAAAGTT
TTCATACGGTACTCTCCGTGGAATTACTACACAAGTCTTTATCTCTACGAGACTAACGTCTTTGT
ACCAAATTCGGGTCTAATGATATTTCGAATGCCTGACTCACGAATTGAACAATTTTATGGCAATC
TGTTTTACCGTAAATGAAAAAGTAGATGCTTTTTCACCCTTTCTATAAGTAACTTTCAGTGTATC
CAATGGAAAAATTTTTTGTACGCAAACCCAACCTCTTTTTCATAT
Right flanking sequence: Indices 152019 -- 152518
AAACTTCGTCTCCCCATCACATTGTCTAACGTATCCCTATGAACTTGTACCCAATCTTCCGTGGG
TATCCTTAAACACATAACAATTGGGTGTCAAGTAAAGTTGACATAACCTTTTCATCAAAAACTAA
AGCCAAACCTTTGAAATCAGGATCAAGCGCTCTAAGAACGTTTACTATCTCAAAACTCTTTAATA
GTTAAAAATATAAACTTGTATTCGATTGTTTGACGACTTCTATTTCTAATGTTTGTATCCATTTC
ACTCGAACCCTCCCCCCCATTTCTCTTCAACCGCTGTGACCGCTCGATTTTTGAACTACTATTAA
AGCTAGAAACATATTTATCAAAATCTGCAAGCGATTTGAAATTATGAATCTCGAACGGCTATGTT
TTAACAGATCTATTGATAGAAGTTTTCATATTGAAGACGTTATCCCAGGGCAGCGAATAATCCAC
ACCATTTAAACTATTTCCCGTCGATTTAATCTTATCAATTCGACG
Found at i:160221 original size:370 final size:370
Alignment explanation
Indices: 159540--160279 Score: 1480
Period size: 370 Copynumber: 2.0 Consensus size: 370
159530 TTCCTTTTAC
159540 GTTTCCCGCTCCCTGACCTCTCCCCGAACGGGTAGGGAGCCAAACTTTAGGTGCCGCCGCGAGCT
1 GTTTCCCGCTCCCTGACCTCTCCCCGAACGGGTAGGGAGCCAAACTTTAGGTGCCGCCGCGAGCT
159605 GAAGCCCAAGAACAATCTCTTTTTTATTCCTTCGGGGCTCTACTGTCTAAGCGGATGAGGTCAAA
66 GAAGCCCAAGAACAATCTCTTTTTTATTCCTTCGGGGCTCTACTGTCTAAGCGGATGAGGTCAAA
159670 TACCCTTGTTTCTTTTTCTTTAGCTCTTTCACGCGCGTGCGGCGAGGGAAGGGCTCGAACGTACG
131 TACCCTTGTTTCTTTTTCTTTAGCTCTTTCACGCGCGTGCGGCGAGGGAAGGGCTCGAACGTACG
159735 AAACGTTCGAGCCCTGAGGTGCTCGTTTTAGGGAATCAGAAAGAAAAGAAGAATAAATATTTGCA
196 AAACGTTCGAGCCCTGAGGTGCTCGTTTTAGGGAATCAGAAAGAAAAGAAGAATAAATATTTGCA
159800 GCACATTGAAGGACGAATGATATTGAAGATGCCATCATTAAGGCAAACGAAGCAATAGCTTCAGT
261 GCACATTGAAGGACGAATGATATTGAAGATGCCATCATTAAGGCAAACGAAGCAATAGCTTCAGT
159865 TAGAGCAAAACCTAAAATAGCATAACCAAATGATTGCTTAGCCAA
326 TAGAGCAAAACCTAAAATAGCATAACCAAATGATTGCTTAGCCAA
159910 GTTTCCCGCTCCCTGACCTCTCCCCGAACGGGTAGGGAGCCAAACTTTAGGTGCCGCCGCGAGCT
1 GTTTCCCGCTCCCTGACCTCTCCCCGAACGGGTAGGGAGCCAAACTTTAGGTGCCGCCGCGAGCT
159975 GAAGCCCAAGAACAATCTCTTTTTTATTCCTTCGGGGCTCTACTGTCTAAGCGGATGAGGTCAAA
66 GAAGCCCAAGAACAATCTCTTTTTTATTCCTTCGGGGCTCTACTGTCTAAGCGGATGAGGTCAAA
160040 TACCCTTGTTTCTTTTTCTTTAGCTCTTTCACGCGCGTGCGGCGAGGGAAGGGCTCGAACGTACG
131 TACCCTTGTTTCTTTTTCTTTAGCTCTTTCACGCGCGTGCGGCGAGGGAAGGGCTCGAACGTACG
160105 AAACGTTCGAGCCCTGAGGTGCTCGTTTTAGGGAATCAGAAAGAAAAGAAGAATAAATATTTGCA
196 AAACGTTCGAGCCCTGAGGTGCTCGTTTTAGGGAATCAGAAAGAAAAGAAGAATAAATATTTGCA
160170 GCACATTGAAGGACGAATGATATTGAAGATGCCATCATTAAGGCAAACGAAGCAATAGCTTCAGT
261 GCACATTGAAGGACGAATGATATTGAAGATGCCATCATTAAGGCAAACGAAGCAATAGCTTCAGT
160235 TAGAGCAAAACCTAAAATAGCATAACCAAATGATTGCTTAGCCAA
326 TAGAGCAAAACCTAAAATAGCATAACCAAATGATTGCTTAGCCAA
160280 TGATGGATTT
Statistics
Matches: 370, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
370 370 1.00
ACGTcount: A:0.29, C:0.23, G:0.24, T:0.25
Consensus pattern (370 bp):
GTTTCCCGCTCCCTGACCTCTCCCCGAACGGGTAGGGAGCCAAACTTTAGGTGCCGCCGCGAGCT
GAAGCCCAAGAACAATCTCTTTTTTATTCCTTCGGGGCTCTACTGTCTAAGCGGATGAGGTCAAA
TACCCTTGTTTCTTTTTCTTTAGCTCTTTCACGCGCGTGCGGCGAGGGAAGGGCTCGAACGTACG
AAACGTTCGAGCCCTGAGGTGCTCGTTTTAGGGAATCAGAAAGAAAAGAAGAATAAATATTTGCA
GCACATTGAAGGACGAATGATATTGAAGATGCCATCATTAAGGCAAACGAAGCAATAGCTTCAGT
TAGAGCAAAACCTAAAATAGCATAACCAAATGATTGCTTAGCCAA
Left flanking sequence: Indices 159040 -- 159539
GATCTACTACTATGTAAATCCAGCGCGAAACGTTATACGCATCCTTGTAACGTCTTTCAGCCCAA
CGCTCATTACTTTGGTCTTATGGAATATGGGCTTAGTAGGACTCGAACCTACAATATCACCGTTA
TGAGCGGTGCGTTCGAACCAATTAAACTATAAGCCCTGGATTCGCTATGCTCACTAACATAGCAA
ATTAAGCCCACCCGCGGCCTTCGGAAGCTATGTAGAGTAGAGAACCAAACGAAAAAGAGGCCCCG
CCGGTCGTCTGGTCGAGTGCTATGCACCTATCCTTCAGGTCTTCGCACTACGTGCCTCCTTTCGT
CAAGGCAAAGGAGTCCGAAGAATCTACAAGCCATTTCCGGCCTTCGGCCGGCGGAAATGGCTTGT
AGATTTCCTTATTAGGCTTTACGAAAAAAGCTACAAGCCAAATAAGTATCCTTTGGACCCTGTAA
AAGTAAGCAGAAAAATATATGGAAAAAAGATTTATTTCCTTTTAC
Right flanking sequence: Indices 160280 -- 160779
TGATGGATTTCGCGCAACAGAATGAATCAAAGAATACCGATAGGGTCGCCGCCCCCCGGTCAGAA
CCACACGTGCAAGTTTCCCTGCATGTGGCTCGTCCATGGCAATTTCTCCAGCTTCTGTGGCTTGG
CCATATAAGCGCTACTAGCCGCCCCCCTTAGACCGGCGGCCCCCCTGCACCTCGTAACTGAGTCA
TTGTAGGCATAGCGTGATCCGCTTTCTCGATTTGGCTATGGTTGCCCTAGAGCGCCGAGACCGGG
ATATTTTGAAAAGGCCCCAAGTGATACAGTTAAAGCTGCGAAAAAAATTTTTAACTAGCCGAAAT
GGCTGATAAGGAAGGGTTCGCAGACTGGAAATGGCTCGTAGATTTCCATGCACGAGTGCTAGAGG
GAAAAGAGGGGGAGAGGCGCGAAGACCAGAGAGAGAAGGTCGACCAGAGCGAGACGACACTCGAC
CGGAGGCCTAAACATATTTTTTCTTGCCGGAGGCGGCGCGGGATA
Found at i:161656 original size:19 final size:21
Alignment explanation
Indices: 161634--161676 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
161624 AAAGAAGAAA
161634 TTTT-CAAAAAAATATTTTTT
1 TTTTACAAAAAAATATTTTTT
* *
161654 TTTTACTAAAATATATTTTTT
1 TTTTACAAAAAAATATTTTTT
161675 TT
1 TT
161677 GTTGCTCGCG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 4 0.20
21 16 0.80
ACGTcount: A:0.35, C:0.05, G:0.00, T:0.60
Consensus pattern (21 bp):
TTTTACAAAAAAATATTTTTT
Left flanking sequence: Indices 161134 -- 161633
AGAAGTGGGTAACAATGTGTTTGTCCCCTGAGGAAGCCAATCGTGGATTGGAGGTTGCTCGAGCT
AAGCCGTTGGCGTTTTTTATCGCGTATCCAAGTTCCAAGGCTTTAGTTATTAAGTCCTTTATGGG
AGCTATTAGTTGTGGACGAGATCGGAGTCTTATTTGGTTGACATCGGATACCTTGTCAGTGCTTG
AGATTTCCACACTTCGGGTGCCGTAATATATTACTAATGCGCCTAAGTATTTGGCCATCCCGGAC
TTTGCGTGTAAGATTTCACTTTTCTGTTCGTTTATGTCCAACTCCAGTTCTTCCTGCAGGAAGTT
TTGCACGGCTTTTATAATATCTAGGGCATCTCGTTTGGTGCCTATAACACCTAAAATTATGTTAT
CCGCGTACCGTAGGTACTTAAGTCTTTTTAATCCTTCTTTCTCAGCCATTTCTGGAAGCGTCTTT
CGGCCCAAAGGGCACGAAACTTTAGGGTTTCGGAAAAAGAAGAAA
Right flanking sequence: Indices 161677 -- 162176
GTTGCTCGCGGTTTATCCACTCTAGGTGTTTGATGTTTCTGATGGCCTGCCCCAATTCTGTATAG
TACTTGAAGAAGGCTTTGTCTTTTGAATGGATATCAAGCCTTTTCCTCCTATATTCTGCCGACGC
GGGGCGCCCTACATTGTATTTGGGTATGAGTATGTCTTCGACGTAGCAATCCAACTTATGTAGGA
AGATATTGGCACAAAGCGGGGATATTATAGAGCCCTGCGGAACGCCCTCTGTGTTGTATCGCGTT
CGATCCGTAAGGTTATATATATCTATGTATCCTGCGTTAAGTAGCTTTCGCATAAGATCCTGTAG
TGCTTTAGATCGCAGTACTGATTCCATCTCCTTAATAAGCAGGTCATGATGAATCTTGTCAAAGT
CTTTCTTAAGATCAATTTGTACAAGCCAAGTTGGTGCCGTCCACGAGTAACGGAGGTATCGCAGG
GCTTCATGACAGCTTCTCCCAGGGCGGAACCCGTGGCTTGAGTCT
Found at i:178810 original size:21 final size:20
Alignment explanation
Indices: 178770--178812 Score: 59
Period size: 21 Copynumber: 2.1 Consensus size: 20
178760 AGGAAAAAAG
*
178770 ATATATTTTTTTGCGCAAAT
1 ATATATTTTTTTGCACAAAT
*
178790 ATATATTTTTTTTGCATAAAT
1 ATATA-TTTTTTTGCACAAAT
178811 AT
1 AT
178813 TCAAGCTAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 5 0.25
21 15 0.75
ACGTcount: A:0.33, C:0.07, G:0.07, T:0.53
Consensus pattern (20 bp):
ATATATTTTTTTGCACAAAT
Left flanking sequence: Indices 178270 -- 178769
AGCACCTAAAACCTCCTGCATAGGTTGCTTTTAGTTAGGCAGGGCTCAAGTCCTAGCCTGGGATA
GCAATGGGCAAAAAAATTTTTCGGTGGCTGAGACCATACATAGTTGTACAAGGTACTATCCGTGT
CTTACCATGAACCGCTCCGGGCGGTTGAATTGATAAAATTTATATAAATGGATTCACTACAGCAT
AATTGGGCCTGGGTTTCTCAGCGCCTTGTATCATTAATCTAGTCTTTATGGGAGCCTGGCGCTAC
GCGAACAAAAAAAAAGATTTTTTTTGCTCTGCATGTTTATAGCACTCCATCGGCAGGGCCCCAAG
GGGACTTTGTTTTGTCGGACACCACAATATTGAAATACTGTCCGACAAAACAAAGGGCTAAAGCC
TTTCAGGCCGAAAGTCGACCCGATCGCAGCCTCTAAGCTCTCTGCCTTTTTTTGACAAGCAATCC
TCCGCAATTTCACGAAAAACTTTAGAGTATGGTCTAGGAAAAAAG
Right flanking sequence: Indices 178813 -- 179081
TCAAGCTAACGGGTGAGGGCCGCAGGCAAAATGAAATATATATTTTATGACAAAATATTTAATTC
TTTCGGCGAATAACGGGATTCGAACCCGTGTTTTCAGAGCCACAATCTGCAACTTTAACCCCTAA
GTTATATCCGCCCCTATTTATAAATGAGATACTCGCTATCGGATTCGAACCGATATTCCATTAGA
AACAGATTTTGAGTCTGCCGTGTTTGCCGTTCCACCAAGCGAGTCTTGGCTTTTATTAGGAATAG
ATCGAAAAT
Done.