Specifications
==============

Sequence source file: "/mnt/biodata02/home/xyzhang/pmgdraw-test/test_set/outdir_mt1/NC_046778.1/NC_046778/Repetitive_sequence/123.misa.ini"

Definement of microsatellites (unit size / minimum number of repeats):
(1/10) (2/6) (3/5) (4/5) (5/5) (6/5) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              1
Total size of examined sequences (bp):           99864
Total number of identified SSRs:                 63
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    10


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	39
2	24

Frequency of identified SSR motifs
----------------------------------

Repeats	5	6	7	8	9	10	11	12	13	14	15	total
A	-	-	-	-	-	16	1	1				18
G	-	-	-	-	-	1	2					3
T	-	-	-	-	-	10	4	3			1	18
AT	-	10	5	3	1		1	1				21
TA	-	1	2									3

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	5	6	7	8	9	10	11	12	13	14	15	total
A/T	-	-	-	-	-	26	5	4			1	36
C/G	-	-	-	-	-	1	2					3
AT/AT	-	11	7	3	1		1	1				24