Specifications
==============

Sequence source file: "/mnt/biodata02/home/xyzhang/pmgdraw-test/test_set/outdir_mt2/NC_013444.1/NC_013444/Repetitive_sequence/123.misa.ini"

Definement of microsatellites (unit size / minimum number of repeats):
(1/10) (2/6) (3/5) (4/5) (5/5) (6/5) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              1
Total size of examined sequences (bp):           168526
Total number of identified SSRs:                 46
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    5


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	30
2	14
3	2

Frequency of identified SSR motifs
----------------------------------

Repeats	5	6	7	8	9	10	11	12	13	14	15	16	total
A	-	-	-	-	-	2	3	1					6
C	-	-	-	-	-	5			1	1		1	8
G	-	-	-	-	-	5		1				1	7
T	-	-	-	-	-	6	1	2					9
AT	-	6	2	1			1			2			12
TA	-					1	1						2
AAT	1												1
GAA			1										1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	5	6	7	8	9	10	11	12	13	14	15	16	total
A/T	-	-	-	-	-	8	4	3					15
C/G	-	-	-	-	-	10		1	1	1		2	15
AT/AT	-	6	2	1		1	2			2			14
AAG/CTT			1										1
AAT/ATT	1												1