Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_039746
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 1191054
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 2 characters in sequence are not A, C, G, or T
File 8 of 8
Found at i:1108741 original size:35 final size:38
Alignment explanation
Indices: 1108684--1108760 Score: 115
Period size: 35 Copynumber: 2.1 Consensus size: 38
1108674 TCGACTGATA
1108684 AGGACCCTTTAGGGGGCTCGACTGATAAGGAGA-GGAG
1 AGGACCCTTTAGGGGGCTCGACTGATAAGGAGAGGGAG
* *
1108721 AGGA-CCTTTA-GGTGCTCGACTGTTAAGGAGAGGGAG
1 AGGACCCTTTAGGGGGCTCGACTGATAAGGAGAGGGAG
1108757 AGGA
1 AGGA
1108761 GAGGGAGAGG
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
35 19 0.51
36 14 0.38
37 4 0.11
ACGTcount: A:0.27, C:0.14, G:0.40, T:0.18
Consensus pattern (38 bp):
AGGACCCTTTAGGGGGCTCGACTGATAAGGAGAGGGAG
Left flanking sequence: Indices 1108184 -- 1108683
AGAATGGGGCCTGGAAAAGCTTTCCTGTCACGAAGTATACTTATTTACTTACTTTCAGAAATGAA
AGTAAGGAGCGAAAAGCACTTTCCCGCTGAGGGGAAGGAGCAAAGCCGCTTTCCCGACGAAGGTG
ATTTATTGCTCACCCATAAGCCCCCACCCAATAAGCAAAACAAAGGAGCAAAGCAAAGCCGCCGA
CAAAGGATGCGCTAGCGGGCTCGACCAATAGGGAGAGGTATTTATGGCTCGACCGATAGGGAGAG
GAGGGCAAGGAGGCGCCCCAATAGTAGTAGGGAGAGGAATTTCTTGATCGACCATAAGGTCCGGC
AGGGCTCGACTGTGAAAGGAGAGGATGCGGAGCACGCTCGACCAGCGCCCCCCACCCAATAAGCA
TCAAGGGCCCTATATTATTTAGGGGTCACTCACTATTCCGATGGTGAGGGCCGGCAGGGTGAGGT
ACGAACGCTCGACTAATAAGGATGCGTAAGCAGGCTCGACTGATA
Right flanking sequence: Indices 1108761 -- 1109260
GAGGGAGAGGACCCTTTAGGGGGCTCGACCGTTAGGGAGAGGAGAGGCCCGGTAGGGGCTCACCA
TTCCGATGGTGAGGGATTTGGAAGCTCGACCATAAGGATGCGCAAGCAGGCTCGACTGTTAAGGC
CGCCATCGCCGCCATCGCCGCCATCGCCGCCATCGCCGCCATCGCCGCCATCGCCTTTACACTTT
GGAAACCCCCGTACATGTAGTAGTCCAACAAACACCAAAACAAGCAGAGAGAGGATATAACCCCA
CTTGTCCTAGTGTGACCTCATGTTATAAACGTAATTAGAAGATATTATATACGCAATTACGCCAA
CCAACCAACCAACCACCTCGCCCATATCCATATATTGTTCCAGATCCACCAGCACAAATAGCCGT
ATATATAGAAGATCCAAAGCTAGCACGAGTAGATCCAGGTCCAAATTCAGTCGTTGATCCAGTTG
ACCAAGTGAAAGCTTCAGCAGTTGCTTCTGTCTATTCTGTTGATC
Found at i:1108762 original size:11 final size:11
Alignment explanation
Indices: 1108746--1108771 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
1108736 TCGACTGTTA
1108746 AGGAGAGGGAG
1 AGGAGAGGGAG
1108757 AGGAGAGGGAG
1 AGGAGAGGGAG
1108768 AGGA
1 AGGA
1108772 CCCTTTAGGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.38, C:0.00, G:0.62, T:0.00
Consensus pattern (11 bp):
AGGAGAGGGAG
Left flanking sequence: Indices 1108246 -- 1108745
GAAAGTAAGGAGCGAAAAGCACTTTCCCGCTGAGGGGAAGGAGCAAAGCCGCTTTCCCGACGAAG
GTGATTTATTGCTCACCCATAAGCCCCCACCCAATAAGCAAAACAAAGGAGCAAAGCAAAGCCGC
CGACAAAGGATGCGCTAGCGGGCTCGACCAATAGGGAGAGGTATTTATGGCTCGACCGATAGGGA
GAGGAGGGCAAGGAGGCGCCCCAATAGTAGTAGGGAGAGGAATTTCTTGATCGACCATAAGGTCC
GGCAGGGCTCGACTGTGAAAGGAGAGGATGCGGAGCACGCTCGACCAGCGCCCCCCACCCAATAA
GCATCAAGGGCCCTATATTATTTAGGGGTCACTCACTATTCCGATGGTGAGGGCCGGCAGGGTGA
GGTACGAACGCTCGACTAATAAGGATGCGTAAGCAGGCTCGACTGATAAGGACCCTTTAGGGGGC
TCGACTGATAAGGAGAGGAGAGGACCTTTAGGTGCTCGACTGTTA
Right flanking sequence: Indices 1108772 -- 1109271
CCCTTTAGGGGGCTCGACCGTTAGGGAGAGGAGAGGCCCGGTAGGGGCTCACCATTCCGATGGTG
AGGGATTTGGAAGCTCGACCATAAGGATGCGCAAGCAGGCTCGACTGTTAAGGCCGCCATCGCCG
CCATCGCCGCCATCGCCGCCATCGCCGCCATCGCCGCCATCGCCTTTACACTTTGGAAACCCCCG
TACATGTAGTAGTCCAACAAACACCAAAACAAGCAGAGAGAGGATATAACCCCACTTGTCCTAGT
GTGACCTCATGTTATAAACGTAATTAGAAGATATTATATACGCAATTACGCCAACCAACCAACCA
ACCACCTCGCCCATATCCATATATTGTTCCAGATCCACCAGCACAAATAGCCGTATATATAGAAG
ATCCAAAGCTAGCACGAGTAGATCCAGGTCCAAATTCAGTCGTTGATCCAGTTGACCAAGTGAAA
GCTTCAGCAGTTGCTTCTGTCTATTCTGTTGATCCAGTAGCAGCA
Found at i:1108800 original size:49 final size:45
Alignment explanation
Indices: 1108711--1108807 Score: 131
Period size: 49 Copynumber: 2.1 Consensus size: 45
1108701 TCGACTGATA
* *
1108711 AGGAGAGGAGAGGACCTTTAGGTGCTCGACTGTTAAGGAGAGGGAG
1 AGGAGAGGAGAGGACCTTTAGGGGCTCGACCGTTAAGGAGA-GGAG
*
1108757 AGGAGAGGGAGAGGACCCTTTAGGGGGCTCGACCGTTAGGGAGAGGAG
1 AGGAGA-GGAGAGGA-CCTTTA-GGGGCTCGACCGTTAAGGAGAGGAG
1108805 AGG
1 AGG
1108808 CCCGGTAGGG
Statistics
Matches: 45, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
46 6 0.13
47 8 0.18
48 13 0.29
49 18 0.40
ACGTcount: A:0.27, C:0.12, G:0.46, T:0.14
Consensus pattern (45 bp):
AGGAGAGGAGAGGACCTTTAGGGGCTCGACCGTTAAGGAGAGGAG
Left flanking sequence: Indices 1108211 -- 1108710
TCACGAAGTATACTTATTTACTTACTTTCAGAAATGAAAGTAAGGAGCGAAAAGCACTTTCCCGC
TGAGGGGAAGGAGCAAAGCCGCTTTCCCGACGAAGGTGATTTATTGCTCACCCATAAGCCCCCAC
CCAATAAGCAAAACAAAGGAGCAAAGCAAAGCCGCCGACAAAGGATGCGCTAGCGGGCTCGACCA
ATAGGGAGAGGTATTTATGGCTCGACCGATAGGGAGAGGAGGGCAAGGAGGCGCCCCAATAGTAG
TAGGGAGAGGAATTTCTTGATCGACCATAAGGTCCGGCAGGGCTCGACTGTGAAAGGAGAGGATG
CGGAGCACGCTCGACCAGCGCCCCCCACCCAATAAGCATCAAGGGCCCTATATTATTTAGGGGTC
ACTCACTATTCCGATGGTGAGGGCCGGCAGGGTGAGGTACGAACGCTCGACTAATAAGGATGCGT
AAGCAGGCTCGACTGATAAGGACCCTTTAGGGGGCTCGACTGATA
Right flanking sequence: Indices 1108808 -- 1109307
CCCGGTAGGGGCTCACCATTCCGATGGTGAGGGATTTGGAAGCTCGACCATAAGGATGCGCAAGC
AGGCTCGACTGTTAAGGCCGCCATCGCCGCCATCGCCGCCATCGCCGCCATCGCCGCCATCGCCG
CCATCGCCTTTACACTTTGGAAACCCCCGTACATGTAGTAGTCCAACAAACACCAAAACAAGCAG
AGAGAGGATATAACCCCACTTGTCCTAGTGTGACCTCATGTTATAAACGTAATTAGAAGATATTA
TATACGCAATTACGCCAACCAACCAACCAACCACCTCGCCCATATCCATATATTGTTCCAGATCC
ACCAGCACAAATAGCCGTATATATAGAAGATCCAAAGCTAGCACGAGTAGATCCAGGTCCAAATT
CAGTCGTTGATCCAGTTGACCAAGTGAAAGCTTCAGCAGTTGCTTCTGTCTATTCTGTTGATCCA
GTAGCAGCACTAGTCCATACAGAAGTAGATCATCCAGCAGTAGAT
Found at i:1108903 original size:9 final size:9
Alignment explanation
Indices: 1108889--1108945 Score: 114
Period size: 9 Copynumber: 6.3 Consensus size: 9
1108879 GACTGTTAAG
1108889 GCCGCCATC
1 GCCGCCATC
1108898 GCCGCCATC
1 GCCGCCATC
1108907 GCCGCCATC
1 GCCGCCATC
1108916 GCCGCCATC
1 GCCGCCATC
1108925 GCCGCCATC
1 GCCGCCATC
1108934 GCCGCCATC
1 GCCGCCATC
1108943 GCC
1 GCC
1108946 TTTACACTTT
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 48 1.00
ACGTcount: A:0.11, C:0.56, G:0.23, T:0.11
Consensus pattern (9 bp):
GCCGCCATC
Left flanking sequence: Indices 1108389 -- 1108888
GCTAGCGGGCTCGACCAATAGGGAGAGGTATTTATGGCTCGACCGATAGGGAGAGGAGGGCAAGG
AGGCGCCCCAATAGTAGTAGGGAGAGGAATTTCTTGATCGACCATAAGGTCCGGCAGGGCTCGAC
TGTGAAAGGAGAGGATGCGGAGCACGCTCGACCAGCGCCCCCCACCCAATAAGCATCAAGGGCCC
TATATTATTTAGGGGTCACTCACTATTCCGATGGTGAGGGCCGGCAGGGTGAGGTACGAACGCTC
GACTAATAAGGATGCGTAAGCAGGCTCGACTGATAAGGACCCTTTAGGGGGCTCGACTGATAAGG
AGAGGAGAGGACCTTTAGGTGCTCGACTGTTAAGGAGAGGGAGAGGAGAGGGAGAGGACCCTTTA
GGGGGCTCGACCGTTAGGGAGAGGAGAGGCCCGGTAGGGGCTCACCATTCCGATGGTGAGGGATT
TGGAAGCTCGACCATAAGGATGCGCAAGCAGGCTCGACTGTTAAG
Right flanking sequence: Indices 1108946 -- 1109445
TTTACACTTTGGAAACCCCCGTACATGTAGTAGTCCAACAAACACCAAAACAAGCAGAGAGAGGA
TATAACCCCACTTGTCCTAGTGTGACCTCATGTTATAAACGTAATTAGAAGATATTATATACGCA
ATTACGCCAACCAACCAACCAACCACCTCGCCCATATCCATATATTGTTCCAGATCCACCAGCAC
AAATAGCCGTATATATAGAAGATCCAAAGCTAGCACGAGTAGATCCAGGTCCAAATTCAGTCGTT
GATCCAGTTGACCAAGTGAAAGCTTCAGCAGTTGCTTCTGTCTATTCTGTTGATCCAGTAGCAGC
ACTAGTCCATACAGAAGTAGATCATCCAGCAGTAGATCCAGCAGATGATTCATATTATCCAGTAG
CAGGGGTAGCAAAGGCAAGAGCAAGGTTATCCTTGCACTCGGAAGCGCAAGACCTCCGGACCTTA
CCTTTCACCGGCCGGCCAGGGAGAATATCTAGTGTTTATAAGGAT
Found at i:1113235 original size:29 final size:29
Alignment explanation
Indices: 1113198--1113347 Score: 291
Period size: 29 Copynumber: 5.2 Consensus size: 29
1113188 CGGACCTCCC
*
1113198 ACGTTCCTCTCCCTATGGTCGAGTCACTA
1 ACGTACCTCTCCCTATGGTCGAGTCACTA
1113227 ACGTACCTCTCCCTATGGTCGAGTCACTA
1 ACGTACCTCTCCCTATGGTCGAGTCACTA
1113256 ACGTACCTCTCCCTATGGTCGAGTCACTA
1 ACGTACCTCTCCCTATGGTCGAGTCACTA
1113285 ACGTACCTCTCCCTATGGTCGAGTCACTA
1 ACGTACCTCTCCCTATGGTCGAGTCACTA
1113314 ACGTACCTCTCCCTATGGTCGAGTCACTA
1 ACGTACCTCTCCCTATGGTCGAGTCACTA
1113343 ACGTA
1 ACGTA
1113348 TTCATTTGAC
Statistics
Matches: 120, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
29 120 1.00
ACGTcount: A:0.21, C:0.34, G:0.17, T:0.28
Consensus pattern (29 bp):
ACGTACCTCTCCCTATGGTCGAGTCACTA
Left flanking sequence: Indices 1112698 -- 1113197
GAGATTTCATCACTATGCGTATCTTGGCGGTCGTTCCTTTTGGTGGTGGTTCTTTCTGGTTCTGA
ATTGTGCCATTACGTGGTGATGCGCTGGCATGCATAATGGTGAGCGCATCGTTCCCGCCATCATT
TTCGTTATGGTAATGATGAATGATGAATGCGAATGGGGAAGGTTCAATTGCTTGCATTGATCGAA
ACATTTGCGACAGGTCCTAGCAAGCATTAGCATGAGCTTGTTGACGCCAGCTCTAGGAGAATGCA
ACTAATACCAATCAATCTCTCGATACCTCTCCCGGTGGTCGAGCCCTCTCCTCTTAGTTCTTCTC
GTTTCAATTTACTTATTTTGTGCCCCTCTCAAATAAGTAACTAGCGTTGGTCGAGTCACTAACGT
ACCTCTCCTTACCAGTCGAGCCCCTGACGGACCTCTCTTTTGGGGCCCCTACCCCAAAAGAGAGT
TGCTCGTTTCCTCTCCTTATCAGTCGAGCCCCTGACGGACCTCCC
Right flanking sequence: Indices 1113348 -- 1113847
TTCATTTGACTTATTGGGTGCCCCTCTCAAATAAGTAACTAGCATAAGTCGAGTCACTTAACGTA
CCTCACCCTGCCGGCCCTCTCCTTGACAGTCGAGTGTACTAACGCACCCTCACCATATGAATAGT
GAGTGACCCCTCTCCTCTCCTTATCAGTCGAGCCCCCTCTCCTCTCCTTATCAGTCGAGCCCCCT
AAAGGGTCCTTATTAGTCGAGCGTGCTTACGCACCCTAAAGGGTCCTTGACAGTCGAGCCCCTAC
CGGTCCTCACCATATGAATAGTGAGTGTGCTAACGCACCCTCTCCCCTCCTCTCAAATAAGTAAC
CAAAGGCAGTCGAGTGTGCTTACGCACCCTCACCATATGAATAGTGAGTGGCTCCGCCCCTAAAG
AATATAGGGTGAGGTAACGAACGCTCGACCCCCGGGAGAGGGCCCTTGATGCTTATTGGGTGGCC
CCTCTCAAATAAGTAACTAAAGGTTGGTCGAGCCATGCTTCGCAT
Found at i:1113521 original size:27 final size:27
Alignment explanation
Indices: 1113484--1113542 Score: 118
Period size: 27 Copynumber: 2.2 Consensus size: 27
1113474 TAGTGAGTGA
1113484 CCCCTCTCCTCTCCTTATCAGTCGAGC
1 CCCCTCTCCTCTCCTTATCAGTCGAGC
1113511 CCCCTCTCCTCTCCTTATCAGTCGAGC
1 CCCCTCTCCTCTCCTTATCAGTCGAGC
1113538 CCCCT
1 CCCCT
1113543 AAAGGGTCCT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.10, C:0.51, G:0.10, T:0.29
Consensus pattern (27 bp):
CCCCTCTCCTCTCCTTATCAGTCGAGC
Left flanking sequence: Indices 1112984 -- 1113483
CTCTCCCGGTGGTCGAGCCCTCTCCTCTTAGTTCTTCTCGTTTCAATTTACTTATTTTGTGCCCC
TCTCAAATAAGTAACTAGCGTTGGTCGAGTCACTAACGTACCTCTCCTTACCAGTCGAGCCCCTG
ACGGACCTCTCTTTTGGGGCCCCTACCCCAAAAGAGAGTTGCTCGTTTCCTCTCCTTATCAGTCG
AGCCCCTGACGGACCTCCCACGTTCCTCTCCCTATGGTCGAGTCACTAACGTACCTCTCCCTATG
GTCGAGTCACTAACGTACCTCTCCCTATGGTCGAGTCACTAACGTACCTCTCCCTATGGTCGAGT
CACTAACGTACCTCTCCCTATGGTCGAGTCACTAACGTATTCATTTGACTTATTGGGTGCCCCTC
TCAAATAAGTAACTAGCATAAGTCGAGTCACTTAACGTACCTCACCCTGCCGGCCCTCTCCTTGA
CAGTCGAGTGTACTAACGCACCCTCACCATATGAATAGTGAGTGA
Right flanking sequence: Indices 1113543 -- 1114042
AAAGGGTCCTTATTAGTCGAGCGTGCTTACGCACCCTAAAGGGTCCTTGACAGTCGAGCCCCTAC
CGGTCCTCACCATATGAATAGTGAGTGTGCTAACGCACCCTCTCCCCTCCTCTCAAATAAGTAAC
CAAAGGCAGTCGAGTGTGCTTACGCACCCTCACCATATGAATAGTGAGTGGCTCCGCCCCTAAAG
AATATAGGGTGAGGTAACGAACGCTCGACCCCCGGGAGAGGGCCCTTGATGCTTATTGGGTGGCC
CCTCTCAAATAAGTAACTAAAGGTTGGTCGAGCCATGCTTCGCATCCTCTATTTCCCCAATTCCA
TAGGATTCTTACTTCTTATTCGTTCGGGAAGGTTGCACCTCTCTCTTGGGGGGAATGAATAAAGA
AAGGGCAGATAAGGTTCAATTTACTTATTGGGTGCCCCTCTCAAATAAGTAACTAAAAGGCGGTG
GTCGAGCCTGCTTGCGCATCCTGAAAGGTCTTGAGCTCTGCTCAG
Found at i:1113552 original size:27 final size:27
Alignment explanation
Indices: 1113494--1113564 Score: 79
Period size: 27 Copynumber: 2.6 Consensus size: 27
1113484 CCCCTCTCCT
*** *
1113494 CTCCTTATCAGTCGAGCCCCCTCTCCT
1 CTCCTTATCAGTCGAGCCCCCTAAACG
*
1113521 CTCCTTATCAGTCGAGCCCCCTAAAGG
1 CTCCTTATCAGTCGAGCCCCCTAAACG
* *
1113548 GTCCTTATTAGTCGAGC
1 CTCCTTATCAGTCGAGC
1113565 GTGCTTACGC
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 37 1.00
ACGTcount: A:0.17, C:0.38, G:0.17, T:0.28
Consensus pattern (27 bp):
CTCCTTATCAGTCGAGCCCCCTAAACG
Left flanking sequence: Indices 1112994 -- 1113493
GGTCGAGCCCTCTCCTCTTAGTTCTTCTCGTTTCAATTTACTTATTTTGTGCCCCTCTCAAATAA
GTAACTAGCGTTGGTCGAGTCACTAACGTACCTCTCCTTACCAGTCGAGCCCCTGACGGACCTCT
CTTTTGGGGCCCCTACCCCAAAAGAGAGTTGCTCGTTTCCTCTCCTTATCAGTCGAGCCCCTGAC
GGACCTCCCACGTTCCTCTCCCTATGGTCGAGTCACTAACGTACCTCTCCCTATGGTCGAGTCAC
TAACGTACCTCTCCCTATGGTCGAGTCACTAACGTACCTCTCCCTATGGTCGAGTCACTAACGTA
CCTCTCCCTATGGTCGAGTCACTAACGTATTCATTTGACTTATTGGGTGCCCCTCTCAAATAAGT
AACTAGCATAAGTCGAGTCACTTAACGTACCTCACCCTGCCGGCCCTCTCCTTGACAGTCGAGTG
TACTAACGCACCCTCACCATATGAATAGTGAGTGACCCCTCTCCT
Right flanking sequence: Indices 1113565 -- 1114064
GTGCTTACGCACCCTAAAGGGTCCTTGACAGTCGAGCCCCTACCGGTCCTCACCATATGAATAGT
GAGTGTGCTAACGCACCCTCTCCCCTCCTCTCAAATAAGTAACCAAAGGCAGTCGAGTGTGCTTA
CGCACCCTCACCATATGAATAGTGAGTGGCTCCGCCCCTAAAGAATATAGGGTGAGGTAACGAAC
GCTCGACCCCCGGGAGAGGGCCCTTGATGCTTATTGGGTGGCCCCTCTCAAATAAGTAACTAAAG
GTTGGTCGAGCCATGCTTCGCATCCTCTATTTCCCCAATTCCATAGGATTCTTACTTCTTATTCG
TTCGGGAAGGTTGCACCTCTCTCTTGGGGGGAATGAATAAAGAAAGGGCAGATAAGGTTCAATTT
ACTTATTGGGTGCCCCTCTCAAATAAGTAACTAAAAGGCGGTGGTCGAGCCTGCTTGCGCATCCT
GAAAGGTCTTGAGCTCTGCTCAGGTTCTGACAGGAAGAATGAAGC
Found at i:1115550 original size:21 final size:21
Alignment explanation
Indices: 1115526--1115566 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
1115516 CAGGATGGCC
*
1115526 CTTGCTTGCTTCCTTCGTTGG
1 CTTGCTCGCTTCCTTCGTTGG
1115547 CTTGCTCGCTTCCTTCGTTG
1 CTTGCTCGCTTCCTTCGTTG
1115567 ATTGGTTGGA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.00, C:0.32, G:0.22, T:0.46
Consensus pattern (21 bp):
CTTGCTCGCTTCCTTCGTTGG
Left flanking sequence: Indices 1115026 -- 1115525
TCGTTCTACAACTACTGTATTGGCCGTATAATACTGTAGATACAATGACTCTGGGTATGCAAATA
GTGTTATCCGTATGTGGTAGGATGCGTAGGGTAAGGATAAGTTATAACTTCGCTAACGTGTTTTG
TTGTTCTGTACGGGTTGTGACCCGTCTATGTCCCACCCACGTAGTATTAGTATTTGTTTGGGGCA
TGTATTGGTCGTATTATGTAGGACACTATCATTCTATCTCTTGGTTGTATTATGTATGATACCGG
TATGCTTGCTATTGGTGGTATCCGCCAAGGCTATTGTTTGAATTGTTCATGTTCTGTCAACGTGC
AACGCATGGACCATTCTTTCTCTTGCCTGTCTCTGGCTGTCCCCCGTATGTTCCACTGTCGTTCC
CTCTCGAAAGGGAGAACCTTGTCTATTGTAATGTCCCCTGTAGCATCTCTATATATATAGAGATG
CCCATATCTATTTTGTCTTTGCGTGTTGCTTTCGACAGGATGGCC
Right flanking sequence: Indices 1115567 -- 1116066
ATTGGTTGGAGGCCAACATCTTTCGGGCCCTTCACCACTGGCTTTGTCCTCCCCGATTGGTCCTG
ACCTTCTATAGCTGTGTTTGCTATCGCTCGTAATTCATCTTTGACGAACCCGAGTTGGGACGACT
ACTTGTGGCGAGCTCCAGGGGCCATATGCCTAATTTTGATACGGTTCCCTAGCACTTCTTATCAG
TGTTTTGGTTCCCTAGCACTTCTTTCCATTGGTAACGCGCTACTAATAGCAGATCTGGGTTCGGG
GGTGGATATCCAGGATGAGGGTATCAATTCGCCTTATGCATTTCTATTTGTCTTCTGTTTTCGCT
CATTACAGTGGTCCACCCTCCCTAATAGATGCTTACGAGATACGATTAGCTGCTAGCTGTGGATG
ATCATCATTGGTCTCCTGTTGTACGTGTCCCAGATAGTTCTAGGCATGCTCCAGACGGTTCCATA
CATGCTCCGAATGCTCCTTGGCCTTATGGTTATGAAAGGGTGACG
Found at i:1119028 original size:24 final size:24
Alignment explanation
Indices: 1118980--1119044 Score: 76
Period size: 24 Copynumber: 2.7 Consensus size: 24
1118970 TCAGCTTGGA
* **
1118980 TGGATGGGGAGCTCGCTGGTTAGC
1 TGGATGGGGAGCTTGCTGGGGAGC
1119004 TGGATGGGGAGCTTGCTGGGGAGC
1 TGGATGGGGAGCTTGCTGGGGAGC
* **
1119028 TGGTTGGTTAGCTTGCT
1 TGGATGGGGAGCTTGCT
1119045 TGCTAGACCT
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 35 1.00
ACGTcount: A:0.11, C:0.14, G:0.46, T:0.29
Consensus pattern (24 bp):
TGGATGGGGAGCTTGCTGGGGAGC
Left flanking sequence: Indices 1118480 -- 1118979
GCGCGAGGGATTACCGTGGCGTTGGATTCTTGGTTGAAAAGATATAATTGTTTGGCCCAGCTCAC
AAATTACCATTCACGTTGGCATACCATTCAAGAACGGATTGATCGCGCGCATACTTCTTATTCAT
TGTCCTGATCATCTAATTATTAATTAGTTTATGATTCAAGATCTCCTGTGGCATCATATTCCTTG
CTCGGTTCCTGCTACTGCTATTAGTATTATGAATTACTCTTCTTCACACTATAGTAGAATTCGCT
CTTCGCTCCTACCATCCTTTCTCCTTGGCCTGCGGGGTAGTCTATGCCTTTCAACTATATAGCAT
CCTTGTTCGCTTCTGCCTGTACCAAAGCCTGAGAGTTTTTCCTGAGCGTACTTCTCGTTTCCCTT
CTCCGACCGATAGTTAGGTAGGTTCATTAGAGTCAATTAAGTTGCTCGATGATGGATTTCATCAG
CTTGGGTCGATTAAGTTGCTCGATGATGGATTTCATCAGCTTGGA
Right flanking sequence: Indices 1119045 -- 1119544
TGCTAGACCTAACTGAGGCTGGTCGATATAATCTGAGGCTGGTTGAACACAGCTGCTTGCCGGTT
GATTAACCGAGCGAGGGCTGCTTTAACCCGTGAGGCAAGAACTTACGCTAGAACGTTTGGCTATA
CAGGTTACACCCGATGATGATTATGCTCAGATCTACAAGAAAAAAAAGCACCGATTGATTTAGAG
ATTGATAACGACTGAAAAGCCTAGGTTGGTGATCCCACCTTGCCCGGATAGTGAGTTATTGATTT
GATTGATTGATTGACGACAGAAACCCTAGCTTCTACAGGACGAGACGACAAAACCCGTTATCTAG
CTAGAAACCCAAGGGATGGAAGAACCCGTTATCTAGCTAGAACCTGTCTGTGGTGGCTAGACGTT
AGGATTGAAGGAACTCAATATCTGGGCTGGATTGGATAGTCGAAGAACCGACCGGGCTGGTTGAA
GAAATGAGGACCGGCAGGGTGAGGTACGAACGCTCGACTAATAAG
Found at i:1119567 original size:19 final size:20
Alignment explanation
Indices: 1119531--1119569 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
1119521 AGGTACGAAC
1119531 GCTCGACTAATAAGGAGAGG
1 GCTCGACTAATAAGGAGAGG
*
1119551 GCTCGACTAA-CAGGAGAGG
1 GCTCGACTAATAAGGAGAGG
1119570 ATTTGAGATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 8 0.44
20 10 0.56
ACGTcount: A:0.33, C:0.18, G:0.36, T:0.13
Consensus pattern (20 bp):
GCTCGACTAATAAGGAGAGG
Left flanking sequence: Indices 1119031 -- 1119530
TTGGTTAGCTTGCTTGCTAGACCTAACTGAGGCTGGTCGATATAATCTGAGGCTGGTTGAACACA
GCTGCTTGCCGGTTGATTAACCGAGCGAGGGCTGCTTTAACCCGTGAGGCAAGAACTTACGCTAG
AACGTTTGGCTATACAGGTTACACCCGATGATGATTATGCTCAGATCTACAAGAAAAAAAAGCAC
CGATTGATTTAGAGATTGATAACGACTGAAAAGCCTAGGTTGGTGATCCCACCTTGCCCGGATAG
TGAGTTATTGATTTGATTGATTGATTGACGACAGAAACCCTAGCTTCTACAGGACGAGACGACAA
AACCCGTTATCTAGCTAGAAACCCAAGGGATGGAAGAACCCGTTATCTAGCTAGAACCTGTCTGT
GGTGGCTAGACGTTAGGATTGAAGGAACTCAATATCTGGGCTGGATTGGATAGTCGAAGAACCGA
CCGGGCTGGTTGAAGAAATGAGGACCGGCAGGGTGAGGTACGAAC
Right flanking sequence: Indices 1119570 -- 1120069
ATTTGAGATTCTCGTTACTAATGATATTTTCCACTTTAGAACATGCTCGTAAATAATCTATTTGT
TATAAGCATCAGTAGTGCCTAGCCTGGTATGCCCGGCTGGTAGGTGGGGTGCCTATGCCTGGTGA
GGATAGCAGGTTCAAATGAGAAGGGTTGGGGAAGCTCAGTGTCTAAGTAAGGCCCGCCCAGGACC
ATTATAAGATCCATAGCCAGAAGCCTGGAGCATTTGAATAATAGCCGCCTTTACCGCTACTAATG
AGACTGAGAAAGATGGGTCCACGGGGACTAGATAGGAATCTCTGCTACTAGGTAAACTGAGTCAA
CAACAACTTGTTCCGCAACCCTGCCTTCACTGCTTATACCTTGACTGCTTGCTTTGCTCCGTAAT
ATGCTTGTGATTTCCTCCTGTCTGTAACCACGATTGGCATCGATCTGACTCTTTCACTTGTTTAA
GGTAAGCAACTGGGTCTCGCTAAAGAAGAAATATCAGAATCTTCC
Found at i:1121065 original size:1 final size:1
Alignment explanation
Indices: 1121059--1121197 Score: 278
Period size: 1 Copynumber: 139.0 Consensus size: 1
1121049 AACAGTCGAG
1121059 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
1 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
1121124 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
1 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
1121189 CCCCCCCCC
1 CCCCCCCCC
1121198 TCTCCTCTCC
Statistics
Matches: 138, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 138 1.00
ACGTcount: A:0.00, C:1.00, G:0.00, T:0.00
Consensus pattern (1 bp):
C
Left flanking sequence: Indices 1120559 -- 1121058
TGAGGGTCTTTAGACGCTCGACCGTAGGGAGAGGAAAAAGAGGCTGTTTGGCCCCCTCCTTATAA
GTGAATTTGGGCACGAGAAGCTAGGTTTTGAGGAAGGTGGGTGAGCAAGAGTCTGACCCAAGGAA
CATGAGCATGAGACAGTTATCCGTAGATTAGACCAAAGAAAAGGAAGGTCCGGAGGGTCTTGCGC
TTCCTAGTGCAAGGAGAGAGATTTCGATATTCTCTATGTCATTATGCATGAATGAATTATATATG
TCATTACGCATCAAAACCTCCGCCTCCTCTCCTTATCAGTCGAGTCACTAACGTACCTCTCCCGC
TGGTCGAGCGTGCTCCGCATCCTCTCCTCTCCTCTCGATGGCGGCCCTCTCCTCTCCCTCTCCTT
AACAGTCGAGCACCTAAAGGTTAGGGTTTACTTATTGGGTTGGGGGGTTATCAGTCGAGCCTGCT
TACGCATCCTTAGGGTCGAGCACCTAAAGGTCCTTAACAGTCGAG
Right flanking sequence: Indices 1121198 -- 1121697
TCTCCTCTCCCTCTCCTTAACAGTCGAGCACCTAAAGGTTAGGGTTTACTTATTGGGTTGGGGGG
TTATCAGTCGAGCCTGCTTACGCATCCTTAGGGTCGAGCACCTAAAGGTCCTTATCAGTCGAGCC
CCCTAAAGGGTCCTTATCAGTCGAGCACCTAAAGGTCCTTATGGTCGAGCACCTAAAGGTTCAAT
TTACTTATTGGGTGCCCCTCTCAAATAAGTAACTAGCGTTGGTCGAGCGTGCTCCGCATCCTCTC
CTCTCCTCTCCCTCTCCTTAACAGTCGAGCACCTAAAGGTTAGGGTTTACTTATTGGGTTGGGGG
GTTATCAGTCGAGCCTGCTTACGCATCCTTAGGGTCGAGCACCTAAAGGTCCTTAAATCAGCACT
TCGATTATACAGCATGGTTGCGACATGAAGAGCAAGCCCCTACCGGTCCTTGCCCGGTGCGGACA
AGCAATCAATTACCTTGCACTAGGAAGCGCAAGCCCCTCCGGGAC
Found at i:1121322 original size:51 final size:52
Alignment explanation
Indices: 1121263--1121385 Score: 135
Period size: 51 Copynumber: 2.4 Consensus size: 52
1121253 GGTTGGGGGG
** * * **
1121263 TTATCAGTCGAGCCTGCTTACGCATCCTTA-GGGTCGAGCACCTAAAGGTCC
1 TTATCAGTCGAGCCCCCTAAAGCATCCTTATCAGTCGAGCACCTAAAGGTCC
**
1121314 TTATCAGTCGAGCCCCCTAAAGGGTCCTTATCAGTCGAGCACCTAAAGGTCC
1 TTATCAGTCGAGCCCCCTAAAGCATCCTTATCAGTCGAGCACCTAAAGGTCC
* *
1121366 TTAT-GGTCGAG-CACCTAAAG
1 TTATCAGTCGAGCCCCCTAAAG
1121386 GTTCAATTTA
Statistics
Matches: 61, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
50 8 0.13
51 30 0.49
52 23 0.38
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.24
Consensus pattern (52 bp):
TTATCAGTCGAGCCCCCTAAAGCATCCTTATCAGTCGAGCACCTAAAGGTCC
Left flanking sequence: Indices 1120763 -- 1121262
CAAGGAGAGAGATTTCGATATTCTCTATGTCATTATGCATGAATGAATTATATATGTCATTACGC
ATCAAAACCTCCGCCTCCTCTCCTTATCAGTCGAGTCACTAACGTACCTCTCCCGCTGGTCGAGC
GTGCTCCGCATCCTCTCCTCTCCTCTCGATGGCGGCCCTCTCCTCTCCCTCTCCTTAACAGTCGA
GCACCTAAAGGTTAGGGTTTACTTATTGGGTTGGGGGGTTATCAGTCGAGCCTGCTTACGCATCC
TTAGGGTCGAGCACCTAAAGGTCCTTAACAGTCGAGCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTCTCCTCTCCCTCTCCTTAA
CAGTCGAGCACCTAAAGGTTAGGGTTTACTTATTGGGTTGGGGGG
Right flanking sequence: Indices 1121386 -- 1121885
GTTCAATTTACTTATTGGGTGCCCCTCTCAAATAAGTAACTAGCGTTGGTCGAGCGTGCTCCGCA
TCCTCTCCTCTCCTCTCCCTCTCCTTAACAGTCGAGCACCTAAAGGTTAGGGTTTACTTATTGGG
TTGGGGGGTTATCAGTCGAGCCTGCTTACGCATCCTTAGGGTCGAGCACCTAAAGGTCCTTAAAT
CAGCACTTCGATTATACAGCATGGTTGCGACATGAAGAGCAAGCCCCTACCGGTCCTTGCCCGGT
GCGGACAAGCAATCAATTACCTTGCACTAGGAAGCGCAAGCCCCTCCGGGACCTTGCCCTTCCTA
TTTCTTCTCTGGCGGCTTCGCACCTTGCTTTCCTAGCGTCAAGCAAGCCCCTACCGGTCCTTGCC
CGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTCCTTGCCCGGTGCGGACAAGCAATCA
ATTACCTTGCACTAGGAAGCGCAAGCCCCTCCGGGACCTTGCCCT
Found at i:1121379 original size:24 final size:25
Alignment explanation
Indices: 1121295--1121387 Score: 143
Period size: 24 Copynumber: 3.7 Consensus size: 25
1121285 CATCCTTAGG
1121295 GTCGAGCACCTAAAGGTCCTTATCA
1 GTCGAGCACCTAAAGGTCCTTATCA
*
1121320 GTCGAGCCCCCTAAAGGGTCCTTATCA
1 GTCGAG-CACCTAAA-GGTCCTTATCA
*
1121347 GTCGAGCACCTAAAGGTCCTTAT-G
1 GTCGAGCACCTAAAGGTCCTTATCA
1121371 GTCGAGCACCTAAAGGT
1 GTCGAGCACCTAAAGGT
1121388 TCAATTTACT
Statistics
Matches: 63, Mismatches: 3, Indels: 5
0.89 0.04 0.07
Matches are distributed among these distances:
24 17 0.27
25 15 0.24
26 14 0.22
27 17 0.27
ACGTcount: A:0.26, C:0.28, G:0.24, T:0.23
Consensus pattern (25 bp):
GTCGAGCACCTAAAGGTCCTTATCA
Left flanking sequence: Indices 1120795 -- 1121294
TTATGCATGAATGAATTATATATGTCATTACGCATCAAAACCTCCGCCTCCTCTCCTTATCAGTC
GAGTCACTAACGTACCTCTCCCGCTGGTCGAGCGTGCTCCGCATCCTCTCCTCTCCTCTCGATGG
CGGCCCTCTCCTCTCCCTCTCCTTAACAGTCGAGCACCTAAAGGTTAGGGTTTACTTATTGGGTT
GGGGGGTTATCAGTCGAGCCTGCTTACGCATCCTTAGGGTCGAGCACCTAAAGGTCCTTAACAGT
CGAGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCTCTCCTCTCCCTCTCCTTAACAGTCGAGCACCTAAAGGTTAGGGTTTACTTA
TTGGGTTGGGGGGTTATCAGTCGAGCCTGCTTACGCATCCTTAGG
Right flanking sequence: Indices 1121388 -- 1121887
TCAATTTACTTATTGGGTGCCCCTCTCAAATAAGTAACTAGCGTTGGTCGAGCGTGCTCCGCATC
CTCTCCTCTCCTCTCCCTCTCCTTAACAGTCGAGCACCTAAAGGTTAGGGTTTACTTATTGGGTT
GGGGGGTTATCAGTCGAGCCTGCTTACGCATCCTTAGGGTCGAGCACCTAAAGGTCCTTAAATCA
GCACTTCGATTATACAGCATGGTTGCGACATGAAGAGCAAGCCCCTACCGGTCCTTGCCCGGTGC
GGACAAGCAATCAATTACCTTGCACTAGGAAGCGCAAGCCCCTCCGGGACCTTGCCCTTCCTATT
TCTTCTCTGGCGGCTTCGCACCTTGCTTTCCTAGCGTCAAGCAAGCCCCTACCGGTCCTTGCCCG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTCCTTGCCCGGTGCGGACAAGCAATCAAT
TACCTTGCACTAGGAAGCGCAAGCCCCTCCGGGACCTTGCCCTTC
Found at i:1121783 original size:1 final size:1
Alignment explanation
Indices: 1121777--1121813 Score: 74
Period size: 1 Copynumber: 37.0 Consensus size: 1
1121767 GTCCTTGCCC
1121777 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
1121814 TCCTTGCCCG
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 36 1.00
ACGTcount: A:0.00, C:0.00, G:1.00, T:0.00
Consensus pattern (1 bp):
G
Left flanking sequence: Indices 1121277 -- 1121776
TGCTTACGCATCCTTAGGGTCGAGCACCTAAAGGTCCTTATCAGTCGAGCCCCCTAAAGGGTCCT
TATCAGTCGAGCACCTAAAGGTCCTTATGGTCGAGCACCTAAAGGTTCAATTTACTTATTGGGTG
CCCCTCTCAAATAAGTAACTAGCGTTGGTCGAGCGTGCTCCGCATCCTCTCCTCTCCTCTCCCTC
TCCTTAACAGTCGAGCACCTAAAGGTTAGGGTTTACTTATTGGGTTGGGGGGTTATCAGTCGAGC
CTGCTTACGCATCCTTAGGGTCGAGCACCTAAAGGTCCTTAAATCAGCACTTCGATTATACAGCA
TGGTTGCGACATGAAGAGCAAGCCCCTACCGGTCCTTGCCCGGTGCGGACAAGCAATCAATTACC
TTGCACTAGGAAGCGCAAGCCCCTCCGGGACCTTGCCCTTCCTATTTCTTCTCTGGCGGCTTCGC
ACCTTGCTTTCCTAGCGTCAAGCAAGCCCCTACCGGTCCTTGCCC
Right flanking sequence: Indices 1121814 -- 1122313
TCCTTGCCCGGTGCGGACAAGCAATCAATTACCTTGCACTAGGAAGCGCAAGCCCCTCCGGGACC
TTGCCCTTCCTATTTCTTCTCTGGCGGCTTCGCACCTTGCTTTCCTAGCGTCAAGCAAGCCCCTA
CCGGTCCTTGCCCGATGCGGACAAGCGGGTAAACCTCCTTGACCCCCCTATTTCTGGTCCTCATC
CCGATCGGTTATGGAATTGATTCTTTCATCAATGATTTGATCAAATCATTTCTAAAATAAGAAGA
ACGAGATGAAACGGATAGAAAACGCCTCGAGCAAACAATGCCCCACCCCTTTCGCGCTCTTCCGT
TGAAGCGGACCCTGAATAGGAAGCATGACCAAAGAATGGCTTCCAATGCCAGTCTCTTTCGAGCT
ACCAAAAATTGGTTGGTATTGGGAGAGGCAGGATTCGAACCTACGTAGAAAACCTCCAACAGATT
TACAGTCTGTCGCTTTAAACCACTCGGCCACTCTCCCCTTCCCGC
Found at i:1121934 original size:180 final size:180
Alignment explanation
Indices: 1121632--1121957 Score: 652
Period size: 180 Copynumber: 1.8 Consensus size: 180
1121622 AGCCCCTACC
1121632 GGTCCTTGCCCGGTGCGGACAAGCAATCAATTACCTTGCACTAGGAAGCGCAAGCCCCTCCGGGA
1 GGTCCTTGCCCGGTGCGGACAAGCAATCAATTACCTTGCACTAGGAAGCGCAAGCCCCTCCGGGA
1121697 CCTTGCCCTTCCTATTTCTTCTCTGGCGGCTTCGCACCTTGCTTTCCTAGCGTCAAGCAAGCCCC
66 CCTTGCCCTTCCTATTTCTTCTCTGGCGGCTTCGCACCTTGCTTTCCTAGCGTCAAGCAAGCCCC
1121762 TACCGGTCCTTGCCCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
131 TACCGGTCCTTGCCCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
1121812 GGTCCTTGCCCGGTGCGGACAAGCAATCAATTACCTTGCACTAGGAAGCGCAAGCCCCTCCGGGA
1 GGTCCTTGCCCGGTGCGGACAAGCAATCAATTACCTTGCACTAGGAAGCGCAAGCCCCTCCGGGA
1121877 CCTTGCCCTTCCTATTTCTTCTCTGGCGGCTTCGCACCTTGCTTTCCTAGCGTCAAGCAAGCCCC
66 CCTTGCCCTTCCTATTTCTTCTCTGGCGGCTTCGCACCTTGCTTTCCTAGCGTCAAGCAAGCCCC
1121942 TACCGGTCCTTGCCCG
131 TACCGGTCCTTGCCCG
1121958 ATGCGGACAA
Statistics
Matches: 146, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
180 146 1.00
ACGTcount: A:0.14, C:0.33, G:0.31, T:0.22
Consensus pattern (180 bp):
GGTCCTTGCCCGGTGCGGACAAGCAATCAATTACCTTGCACTAGGAAGCGCAAGCCCCTCCGGGA
CCTTGCCCTTCCTATTTCTTCTCTGGCGGCTTCGCACCTTGCTTTCCTAGCGTCAAGCAAGCCCC
TACCGGTCCTTGCCCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
Left flanking sequence: Indices 1121132 -- 1121631
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CTCTCCTCTCCCTCTCCTTAACAGTCGAGCACCTAAAGGTTAGGGTTTACTTATTGGGTTGGGGG
GTTATCAGTCGAGCCTGCTTACGCATCCTTAGGGTCGAGCACCTAAAGGTCCTTATCAGTCGAGC
CCCCTAAAGGGTCCTTATCAGTCGAGCACCTAAAGGTCCTTATGGTCGAGCACCTAAAGGTTCAA
TTTACTTATTGGGTGCCCCTCTCAAATAAGTAACTAGCGTTGGTCGAGCGTGCTCCGCATCCTCT
CCTCTCCTCTCCCTCTCCTTAACAGTCGAGCACCTAAAGGTTAGGGTTTACTTATTGGGTTGGGG
GGTTATCAGTCGAGCCTGCTTACGCATCCTTAGGGTCGAGCACCTAAAGGTCCTTAAATCAGCAC
TTCGATTATACAGCATGGTTGCGACATGAAGAGCAAGCCCCTACC
Right flanking sequence: Indices 1121958 -- 1122457
ATGCGGACAAGCGGGTAAACCTCCTTGACCCCCCTATTTCTGGTCCTCATCCCGATCGGTTATGG
AATTGATTCTTTCATCAATGATTTGATCAAATCATTTCTAAAATAAGAAGAACGAGATGAAACGG
ATAGAAAACGCCTCGAGCAAACAATGCCCCACCCCTTTCGCGCTCTTCCGTTGAAGCGGACCCTG
AATAGGAAGCATGACCAAAGAATGGCTTCCAATGCCAGTCTCTTTCGAGCTACCAAAAATTGGTT
GGTATTGGGAGAGGCAGGATTCGAACCTACGTAGAAAACCTCCAACAGATTTACAGTCTGTCGCT
TTAAACCACTCGGCCACTCTCCCCTTCCCGCCCCCCCTAAATCTGTTCCTGAAGAAGAATCAATA
AGGTTTTATAATATTGAATTTAAGCAACTAATTGTTATTAACTTGGGAAGTCAATAAGGTTTTAT
AATATTGAATTTAAGCAACTAATTGTTATTAACTTGGGAATTGCA
Found at i:1122428 original size:56 final size:56
Alignment explanation
Indices: 1122342--1122452 Score: 222
Period size: 56 Copynumber: 2.0 Consensus size: 56
1122332 TGAAGAAGAA
1122342 TCAATAAGGTTTTATAATATTGAATTTAAGCAACTAATTGTTATTAACTTGGGAAG
1 TCAATAAGGTTTTATAATATTGAATTTAAGCAACTAATTGTTATTAACTTGGGAAG
1122398 TCAATAAGGTTTTATAATATTGAATTTAAGCAACTAATTGTTATTAACTTGGGAA
1 TCAATAAGGTTTTATAATATTGAATTTAAGCAACTAATTGTTATTAACTTGGGAA
1122453 TTGCAACAGT
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
56 55 1.00
ACGTcount: A:0.38, C:0.07, G:0.15, T:0.40
Consensus pattern (56 bp):
TCAATAAGGTTTTATAATATTGAATTTAAGCAACTAATTGTTATTAACTTGGGAAG
Left flanking sequence: Indices 1121842 -- 1122341
TTACCTTGCACTAGGAAGCGCAAGCCCCTCCGGGACCTTGCCCTTCCTATTTCTTCTCTGGCGGC
TTCGCACCTTGCTTTCCTAGCGTCAAGCAAGCCCCTACCGGTCCTTGCCCGATGCGGACAAGCGG
GTAAACCTCCTTGACCCCCCTATTTCTGGTCCTCATCCCGATCGGTTATGGAATTGATTCTTTCA
TCAATGATTTGATCAAATCATTTCTAAAATAAGAAGAACGAGATGAAACGGATAGAAAACGCCTC
GAGCAAACAATGCCCCACCCCTTTCGCGCTCTTCCGTTGAAGCGGACCCTGAATAGGAAGCATGA
CCAAAGAATGGCTTCCAATGCCAGTCTCTTTCGAGCTACCAAAAATTGGTTGGTATTGGGAGAGG
CAGGATTCGAACCTACGTAGAAAACCTCCAACAGATTTACAGTCTGTCGCTTTAAACCACTCGGC
CACTCTCCCCTTCCCGCCCCCCCTAAATCTGTTCCTGAAGAAGAA
Right flanking sequence: Indices 1122453 -- 1122952
TTGCAACAGTTCATATTAGATTTCTTTGGTCGAGCGACTTCGTTCCTCTCCTGTTAGTCGAGTCA
CTTAACGTACCTCTCCCTTATGGTCTTTAGGCCTTACGGCACCTTCGGGTCAATCCTTCGACAAT
GGATATATTATATATGTCATTATGGTCTTTTGATAGCAGGGTGGGCTGTTTCGATCGGTGCCAAG
GTCGAGGAGGTCGAGATCAGAGATCAGTGCGACGGTCAACTGCGATGGCATTTAGTAGGGGATTT
GAGCTTTTCTCCTAATACAACTGCGATGGCATTTAGTAGGGGATTTGAGCTTTTCTCCTAATACA
ACTGCGATGGAAGGAGGGTGGGTCGATGTCAGTAAGTAAGTATTCGTATGTCATACAGGTGTACA
AGATATGCCCGATTAGTTTCTTATGGGAGATTTGGTGAACAGAATTCACTGATTCAACGTGAAGT
TAAGATCCTATAGTTTCATATAATATGATTGGCCTAAAGCGGGCT
Found at i:1122751 original size:46 final size:46
Alignment explanation
Indices: 1122684--1122787 Score: 208
Period size: 46 Copynumber: 2.3 Consensus size: 46
1122674 GTGCGACGGT
1122684 CAACTGCGATGGCATTTAGTAGGGGATTTGAGCTTTTCTCCTAATA
1 CAACTGCGATGGCATTTAGTAGGGGATTTGAGCTTTTCTCCTAATA
1122730 CAACTGCGATGGCATTTAGTAGGGGATTTGAGCTTTTCTCCTAATA
1 CAACTGCGATGGCATTTAGTAGGGGATTTGAGCTTTTCTCCTAATA
1122776 CAACTGCGATGG
1 CAACTGCGATGG
1122788 AAGGAGGGTG
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 58 1.00
ACGTcount: A:0.24, C:0.18, G:0.25, T:0.33
Consensus pattern (46 bp):
CAACTGCGATGGCATTTAGTAGGGGATTTGAGCTTTTCTCCTAATA
Left flanking sequence: Indices 1122184 -- 1122683
ATGCCAGTCTCTTTCGAGCTACCAAAAATTGGTTGGTATTGGGAGAGGCAGGATTCGAACCTACG
TAGAAAACCTCCAACAGATTTACAGTCTGTCGCTTTAAACCACTCGGCCACTCTCCCCTTCCCGC
CCCCCCTAAATCTGTTCCTGAAGAAGAATCAATAAGGTTTTATAATATTGAATTTAAGCAACTAA
TTGTTATTAACTTGGGAAGTCAATAAGGTTTTATAATATTGAATTTAAGCAACTAATTGTTATTA
ACTTGGGAATTGCAACAGTTCATATTAGATTTCTTTGGTCGAGCGACTTCGTTCCTCTCCTGTTA
GTCGAGTCACTTAACGTACCTCTCCCTTATGGTCTTTAGGCCTTACGGCACCTTCGGGTCAATCC
TTCGACAATGGATATATTATATATGTCATTATGGTCTTTTGATAGCAGGGTGGGCTGTTTCGATC
GGTGCCAAGGTCGAGGAGGTCGAGATCAGAGATCAGTGCGACGGT
Right flanking sequence: Indices 1122788 -- 1123287
AAGGAGGGTGGGTCGATGTCAGTAAGTAAGTATTCGTATGTCATACAGGTGTACAAGATATGCCC
GATTAGTTTCTTATGGGAGATTTGGTGAACAGAATTCACTGATTCAACGTGAAGTTAAGATCCTA
TAGTTTCATATAATATGATTGGCCTAAAGCGGGCTAGTTACTTGCTGGCTCTGGCTACTGGGCTA
GCTGTTGGCTGTGGTGATGTTGCTGGCTGTGCTGCTGGCTCTATAGGTGGGTGGTAATGTCTACT
CTGATAACTTACCTACTAGGATGGGTAAATTCACTCTATAAACCTGGCGAATGGGGAGGGTCAAT
TCTCACCTTAAAAGGCGGCCTATCGAGCCAAAGAAGAGACTGGATCAACTCGCTCGGGCCAAGGA
TTTCTAAGGACGGGGAGCCTACCAAACTGGGAAATTCAAGAGCGCAAAGATGGCGTTGCCCATCT
AAACATACCAGCAATAAAGACCAGCCGTACCCCGCCTTGAGATAT
Found at i:1125217 original size:25 final size:25
Alignment explanation
Indices: 1125140--1125209 Score: 106
Period size: 24 Copynumber: 2.8 Consensus size: 25
1125130 CCTCTCCCTC
1125140 TCCTTAACAGTCGAGCACCTAAAGG
1 TCCTTAACAGTCGAGCACCTAAAGG
**
1125165 TCCTT-AGGGTCGAGCACCTAAAGG
1 TCCTTAACAGTCGAGCACCTAAAGG
*
1125189 TCCTTAACAGTCGAGCCCCTA
1 TCCTTAACAGTCGAGCACCTA
1125210 CCGGTCCTCA
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
24 22 0.56
25 17 0.44
ACGTcount: A:0.27, C:0.30, G:0.21, T:0.21
Consensus pattern (25 bp):
TCCTTAACAGTCGAGCACCTAAAGG
Left flanking sequence: Indices 1124640 -- 1125139
CCCTCACCCCCGGTACCCCGCCCGATCTATGTTGACTCTTGTCCGATAAAGAAGGAAGATGACCA
GCCATGCCCTAAAGCAAGATAGAAAAGCCATGCCCCACCCAATCAGCGAGTTGTTCCGGTCAATC
CCAAAACCTTTGCCAAACGCGCATTTTCTAAATCAAAGTTTCATTTCTACGGGTTCCGATAGGTA
TGATCCATCTAGGTTCAATAACTCGAATTTTGCTTTATTCAAATATCTGATTTCATGCAGTGAAG
GTGATTCCATCCATCCAATCAGGCAGGTGGCAGCATAGCTTCTAGCTTTTGGGCTGGTAGGTACG
GCTCTTGCAGGAATAGCTGGAATGGGGTGGTCGGATTCGATGGCTGGTGCGGTTGGGTTGTTAGG
CAGGGTAGATTGCATATCAGGGAAAGGGGAAATCCTCTCCTTAACAGTCGAGCCCCTACCGGTCC
TCACCATCGGAATGGTGAGCCCCTACCGGTCCTCTCCTCTCCCTC
Right flanking sequence: Indices 1125210 -- 1125709
CCGGTCCTCACCATCGGAATGGTGAGCCCCTACCGGTCCTCTCCTCTCCTCTCGATGGCGGCGAT
GGCGGCCCTTATGGTCGAGCGATAAATCCCTTAAGGTCGAGCACCTAAAGGTTAGGGTTTACTTA
TTGGTTTGGGGGGTTATCAGTCGAGCCTGCTTACGCATCCTCTCCCTCTCCCTTAAGGTCGAGCA
CCTAAAGGTCCTATGGTCGAGCACCTAAAGGTCCTTATGGTCGAGCACCTAAAGGTTAGGGTTTA
CTTATTGGTTTGGGGGGTTAACAGTCGAGCATGCTTGCGCATCCTTAACAGTCGAGCCCCTGCCG
GTTAGGGTTTGCTTATTGGGTGGGGGGCATATGAATGAGTGAGTGACCCCTAAAGAATATAGGGT
GAGGTAACGAACGCTCGACCCCCGCCCCCCACCCAATAAGCATCAAGGGCCCTCGCCCTTTTATT
TGGTCGAGCAAGCAAGAAATTGATTTGACTTATTGGGTGGCCCCT
Found at i:1125448 original size:24 final size:24
Alignment explanation
Indices: 1125390--1125460 Score: 126
Period size: 24 Copynumber: 3.0 Consensus size: 24
1125380 TCTCCCTCTC
*
1125390 CCTTAAGGTCGAGCACCTAAAGGT
1 CCTTATGGTCGAGCACCTAAAGGT
1125414 CC-TATGGTCGAGCACCTAAAGGT
1 CCTTATGGTCGAGCACCTAAAGGT
1125437 CCTTATGGTCGAGCACCTAAAGGT
1 CCTTATGGTCGAGCACCTAAAGGT
1125461 TAGGGTTTAC
Statistics
Matches: 45, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
23 22 0.49
24 23 0.51
ACGTcount: A:0.27, C:0.25, G:0.25, T:0.23
Consensus pattern (24 bp):
CCTTATGGTCGAGCACCTAAAGGT
Left flanking sequence: Indices 1124890 -- 1125389
TGCAGTGAAGGTGATTCCATCCATCCAATCAGGCAGGTGGCAGCATAGCTTCTAGCTTTTGGGCT
GGTAGGTACGGCTCTTGCAGGAATAGCTGGAATGGGGTGGTCGGATTCGATGGCTGGTGCGGTTG
GGTTGTTAGGCAGGGTAGATTGCATATCAGGGAAAGGGGAAATCCTCTCCTTAACAGTCGAGCCC
CTACCGGTCCTCACCATCGGAATGGTGAGCCCCTACCGGTCCTCTCCTCTCCCTCTCCTTAACAG
TCGAGCACCTAAAGGTCCTTAGGGTCGAGCACCTAAAGGTCCTTAACAGTCGAGCCCCTACCGGT
CCTCACCATCGGAATGGTGAGCCCCTACCGGTCCTCTCCTCTCCTCTCGATGGCGGCGATGGCGG
CCCTTATGGTCGAGCGATAAATCCCTTAAGGTCGAGCACCTAAAGGTTAGGGTTTACTTATTGGT
TTGGGGGGTTATCAGTCGAGCCTGCTTACGCATCCTCTCCCTCTC
Right flanking sequence: Indices 1125461 -- 1125960
TAGGGTTTACTTATTGGTTTGGGGGGTTAACAGTCGAGCATGCTTGCGCATCCTTAACAGTCGAG
CCCCTGCCGGTTAGGGTTTGCTTATTGGGTGGGGGGCATATGAATGAGTGAGTGACCCCTAAAGA
ATATAGGGTGAGGTAACGAACGCTCGACCCCCGCCCCCCACCCAATAAGCATCAAGGGCCCTCGC
CCTTTTATTTGGTCGAGCAAGCAAGAAATTGATTTGACTTATTGGGTGGCCCCTCTCAAATAAGT
AACTAAAAGCCTGCTTACGCATCCTTTCATTTTGATCCAATCAATCAATTAGGTAGGGAATTCGG
GAGAGATCTCAATTCGGGATCTTGCGAAGAAAATGACTCTGAAAATGAAAGCCCCTTCCTGGGGA
GTCGAGCACCTAAAGGTTAGGGTTTACTTATTGGTTTGGGGGGTTAACAGTCGAGCATGCTTGCG
CATCCTTATCAGTCGAGCCCCCTGTCGGGTCCTCTCCCGGTGGTC
Found at i:1126151 original size:35 final size:36
Alignment explanation
Indices: 1126102--1126177 Score: 145
Period size: 35 Copynumber: 2.1 Consensus size: 36
1126092 CCCCTCCGGG
1126102 ACCTTGCCCTTCCTATTTCTTCTCTGGCGGCTTCGC
1 ACCTTGCCCTTCCTATTTCTTCTCTGGCGGCTTCGC
1126138 ACCTTG-CCTTCCTATTTCTTCTCTGGCGGCTTCGC
1 ACCTTGCCCTTCCTATTTCTTCTCTGGCGGCTTCGC
1126173 ACCTT
1 ACCTT
1126178 TGAAAGAGAA
Statistics
Matches: 40, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
35 34 0.85
36 6 0.15
ACGTcount: A:0.07, C:0.38, G:0.16, T:0.39
Consensus pattern (36 bp):
ACCTTGCCCTTCCTATTTCTTCTCTGGCGGCTTCGC
Left flanking sequence: Indices 1125602 -- 1126101
GGTAACGAACGCTCGACCCCCGCCCCCCACCCAATAAGCATCAAGGGCCCTCGCCCTTTTATTTG
GTCGAGCAAGCAAGAAATTGATTTGACTTATTGGGTGGCCCCTCTCAAATAAGTAACTAAAAGCC
TGCTTACGCATCCTTTCATTTTGATCCAATCAATCAATTAGGTAGGGAATTCGGGAGAGATCTCA
ATTCGGGATCTTGCGAAGAAAATGACTCTGAAAATGAAAGCCCCTTCCTGGGGAGTCGAGCACCT
AAAGGTTAGGGTTTACTTATTGGTTTGGGGGGTTAACAGTCGAGCATGCTTGCGCATCCTTATCA
GTCGAGCCCCCTGTCGGGTCCTCTCCCGGTGGTCGAGCAACTCAAGTTCCTTGCTTTCCTAACGT
CAAGCAAGCACTACGTTCCTTGCACTAGGAAGCGCAAGCCCCTCCGGGTCCTTGCCCGGTGCGGA
CAAGCAATCAATTACCTTGCACTAGGAAGCGCAAGCCCCTCCGGG
Right flanking sequence: Indices 1126178 -- 1126677
TGAAAGAGAAAGGCTCTTTCCTTTGCGAGAAGGCTCCGACAACATTATTCATAGGTTGATTCACC
AATAAGGGTAGTGGCATTGTCCGATAAGAGTCATGCTATAAAGCCTATACAAACTTACATGACAA
GGGGTGTGGTACATACACAGTGTGTGTCTGAAGGTCCTTATGTTGATGGTCAAGGCTCCTCGGTC
TGGGTCTGAAAAAGTGAGTTTTATTGCCCTTACATTGGGAGGGTTAATCGCTGGTCAAGTGTCTC
AGGGAATAGCTGTTCAATGCCAAAGTGAGTAGCTCTAAGAATCCCGATTGGGGCAATGTTTGTTC
TTTAGACACTACTTGCCTTAGTCCATAGTGTAAGTTCAAGCCTTAAAAGAGTGGCTGTATTGAAA
GCTGAGTGAAAGCCTTTAAGTTGTCTCCATTCTTAGAAAAAGAAATATGTGGGATAATAACTTAT
ATAATGCAATCATTGCTTGTGTGATGGAAAGTGTAAGGATATTGA
Found at i:1126846 original size:13 final size:13
Alignment explanation
Indices: 1126828--1126865 Score: 76
Period size: 13 Copynumber: 2.9 Consensus size: 13
1126818 TCTGTCTTAA
1126828 ACCTGGAGACCTT
1 ACCTGGAGACCTT
1126841 ACCTGGAGACCTT
1 ACCTGGAGACCTT
1126854 ACCTGGAGACCT
1 ACCTGGAGACCT
1126866 AGCCATTGCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.24, C:0.32, G:0.24, T:0.21
Consensus pattern (13 bp):
ACCTGGAGACCTT
Left flanking sequence: Indices 1126328 -- 1126827
TGTGTGTCTGAAGGTCCTTATGTTGATGGTCAAGGCTCCTCGGTCTGGGTCTGAAAAAGTGAGTT
TTATTGCCCTTACATTGGGAGGGTTAATCGCTGGTCAAGTGTCTCAGGGAATAGCTGTTCAATGC
CAAAGTGAGTAGCTCTAAGAATCCCGATTGGGGCAATGTTTGTTCTTTAGACACTACTTGCCTTA
GTCCATAGTGTAAGTTCAAGCCTTAAAAGAGTGGCTGTATTGAAAGCTGAGTGAAAGCCTTTAAG
TTGTCTCCATTCTTAGAAAAAGAAATATGTGGGATAATAACTTATATAATGCAATCATTGCTTGT
GTGATGGAAAGTGTAAGGATATTGATGGACAACACATCTTCCGAGAGAGGCGTTCCCACCGGACA
CAGGCAACTTCTCACCCAATAGGCCATACAAAATCATTCGCTCTTTTTCTACTAATTGAACAGCT
CACACCCAATATTTTCCATCCAAACAAATTCGCTTTCTGTCTTAA
Right flanking sequence: Indices 1126866 -- 1127365
AGCCATTGCAGCTATACCTACAACTCCACATCGAACCTCTACCCAACATAGCTCCAACCTAACAG
CTTCTGAACTAACTCGTAAGCTAAGAGTCTCTACTGCATCATGCCTTTTTAGTAAGTGGACCTAT
GCGGGATTGATTCGATTGGTTGAGCGCCTTTTTGCTCGCTGGCTTTTCGGGCTTTACAAAAGAAA
CCGCCCGACAAAGAGAGAAGGCACCCTATGGAAGAGACAAAGGCCCCATGTTACCATCAGACAAA
AAGGAAGTTCACCAGATTAGAGAAGATATGTTAGGCGGGATTGATTCATTGGCTGGGCGGGGCTA
CTATACAGGGCTAATTGGCTTGGCTCATGGGCTGCTCAGTTAGGTTACTCAACTTGGATACCGGG
CTCGGTTGGGATATTCGACTTGGATACTCGGAAACGATACGGAGCCTTGGAAATGTGGTTACCTA
CCTGGGTGGGTTAGATGGAGGGAAAATGACCAAGCGCTATATACG
Found at i:1129240 original size:103 final size:103
Alignment explanation
Indices: 1129072--1129271 Score: 382
Period size: 103 Copynumber: 1.9 Consensus size: 103
1129062 TTCCAGTCAC
1129072 TTGGCATCCCCCGAAGACTGAATCCGTCCATTTCAATCCCTCACCCATAGGAATGAGTGAGTGAC
1 TTGGCATCCCCCGAAGACTGAATCCGTCCATTTCAATCCCTCACCCATAGGAATGAGTGAGTGAC
1129137 CCCTATGAAGAAGTAAGGGCCCTCATCCTTCCGGTAAG
66 CCCTATGAAGAAGTAAGGGCCCTCATCCTTCCGGTAAG
* *
1129175 TTGGCATCTCCCGAAGACTGAATCCGTCCATTTGAATCCCTCACCCATAGGAATGAGTGAGTGAC
1 TTGGCATCCCCCGAAGACTGAATCCGTCCATTTCAATCCCTCACCCATAGGAATGAGTGAGTGAC
1129240 CCCTATGAAGAAGTAAGGGCCCTCATCCTTCC
66 CCCTATGAAGAAGTAAGGGCCCTCATCCTTCC
1129272 TTCAGCTAGC
Statistics
Matches: 95, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
103 95 1.00
ACGTcount: A:0.26, C:0.30, G:0.21, T:0.23
Consensus pattern (103 bp):
TTGGCATCCCCCGAAGACTGAATCCGTCCATTTCAATCCCTCACCCATAGGAATGAGTGAGTGAC
CCCTATGAAGAAGTAAGGGCCCTCATCCTTCCGGTAAG
Left flanking sequence: Indices 1128572 -- 1129071
TCATGAACCGATTTGCTTGATATACTCCCTCGGGCTGGGACAATATTCATATACCCAGCATCTTA
ATTCAGTCAGTGTTCTGGAACGCTGGTGGATGTTGTATCGAAGCTAATCTAAGACGTGTGAAGTA
TAATGAGTCTATCGTGTGGTGTAGTGGTAAGTTGGGCAGTAAGAAGGGTAAGGGTTGGTTGACCC
GGTCCCATCCCGGTCTATCTATAGCTGTACCTCCTAAGCGATTCATGAAGTTCGTGGTATAGGGA
TCTGTCGTCTAGGTCTATAGGTGGGTCAGGTGGTGGTTTGTAAGGCAGGTCCTAAAAAGGTAGGA
TAGGTGTTTGGTCGGAAGGTGGTTCGAAGCATTCAAGTGAAAAGTGGGAAGGCGGTTCCTAAATG
GTTAGGGTAGTCGGTTGGCTGGCCCCAAAATATGGTTAGGTGAAATGACCCCCAATATGGTTGGG
TAGGTTAGGTGGTGGGCTTGGCATCTCCCGAAGACTTCCAGTCAC
Right flanking sequence: Indices 1129272 -- 1129771
TTCAGCTAGCTTGGCATCTCCCTCATACTTGCGCTAACTGGGCATCTACCGAAGACTTCATCCTT
CCATATAAATCAATCAATCCCTCATACTTGCGCTAACTGGGCATCTCCAAAAGAGAACATCCGTC
CACGTCTACCCTGCGGTGTTTGTTCGTAAGGCGGCGGGTCCTAATCGATTAGGTGTTGGTTCGGA
AGGAAGGCGGAAGTCAATAGAGAAGCAGGAAGGCGGCATGAAATCTAGAAGGCAGTCAAGTTATT
AGTCGGAGGTAAGTCGGAAGTAAGGCAGTCAATATAGAAGCAGGAAGGCAGTCAAGGTATTCGGA
AGGTGGCATGACTCTCACACAAGCAGTACTCTAACGCTGGGCAAGCATTCAAGGGGTAAGTCTCA
AGGTCGAGTGAAGAAGCAGTAAATCAAGGTCGGAGGTAAGGTGAAAGAAGCATGACTCTAAGGGC
AAGCAGTCCTTTCAGGTTCCTCTCAGGCTGGGCAACAAAACGCTG
Found at i:1129849 original size:33 final size:33
Alignment explanation
Indices: 1129783--1129851 Score: 104
Period size: 33 Copynumber: 2.1 Consensus size: 33
1129773 GCAAGCATGA
*
1129783 AAGTTCGAAGTAGTAAGGTGGGTCGAATAAGTC
1 AAGTTCGAAGTAGTAAGGTGGGTCGAAGAAGTC
*
1129816 AAGTTCGAAGTAGTAAGGTGAGG-CGAAGCAGTC
1 AAGTTCGAAGTAGTAAGGTG-GGTCGAAGAAGTC
1129849 AAG
1 AAG
1129852 GTATCAGTGG
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
33 31 0.94
34 2 0.06
ACGTcount: A:0.35, C:0.10, G:0.35, T:0.20
Consensus pattern (33 bp):
AAGTTCGAAGTAGTAAGGTGGGTCGAAGAAGTC
Left flanking sequence: Indices 1129283 -- 1129782
TGGCATCTCCCTCATACTTGCGCTAACTGGGCATCTACCGAAGACTTCATCCTTCCATATAAATC
AATCAATCCCTCATACTTGCGCTAACTGGGCATCTCCAAAAGAGAACATCCGTCCACGTCTACCC
TGCGGTGTTTGTTCGTAAGGCGGCGGGTCCTAATCGATTAGGTGTTGGTTCGGAAGGAAGGCGGA
AGTCAATAGAGAAGCAGGAAGGCGGCATGAAATCTAGAAGGCAGTCAAGTTATTAGTCGGAGGTA
AGTCGGAAGTAAGGCAGTCAATATAGAAGCAGGAAGGCAGTCAAGGTATTCGGAAGGTGGCATGA
CTCTCACACAAGCAGTACTCTAACGCTGGGCAAGCATTCAAGGGGTAAGTCTCAAGGTCGAGTGA
AGAAGCAGTAAATCAAGGTCGGAGGTAAGGTGAAAGAAGCATGACTCTAAGGGCAAGCAGTCCTT
TCAGGTTCCTCTCAGGCTGGGCAACAAAACGCTGGGCAAGCATGA
Right flanking sequence: Indices 1129852 -- 1130351
GTATCAGTGGGTCGGCGGGTGTCATTTCAGCTTCCATTCCTAACCGTCGTCTTGCTATAAGCACA
GTGTAACCTATTTTGTTCTGCTAGGTGAAAATATTGGTCGTAGAATCAGGCCTTTGGGGTATTTA
GTGTGGGTTTTCTTCTGGGACTTCAAGGTTCAGGTCCTGGGTCAACCCAGCCAGTAAGGTCCTGA
TCAACCCTCTCATTTTGAATTGAGGGGAAGAAATCAATTTGAGGGGAAGAAATATTGATAACCTT
CATATTTGTTTGCGTGCGATGGATCGCCATCATTCTTTCTTTTTGCTCCGATCGGAACTATTCCG
AATTTGCGACAAGTCCTAGCATTAGTATGAGTTCGTTGACCGCGTAAGGGCAATCCATCTTGATG
ACGAATTCCACGATAACAAGAAATAGGAATGAATCGTTCGATGTCTGCTCGTTTTCCCCTCTTCA
ATTCCCAATGAACAACATGATCTTGACCTATTATTCGTTCAATTT
Found at i:1131482 original size:18 final size:18
Alignment explanation
Indices: 1131459--1131496 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
1131449 AAATAGATCC
1131459 ACCTAC-CTACGCTGCGCT
1 ACCTACGCT-CGCTGCGCT
*
1131477 ACCTACGCTCGCTGCTCT
1 ACCTACGCTCGCTGCGCT
1131495 AC
1 AC
1131497 TACTTTCATT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 16 0.89
19 2 0.11
ACGTcount: A:0.16, C:0.45, G:0.16, T:0.24
Consensus pattern (18 bp):
ACCTACGCTCGCTGCGCT
Left flanking sequence: Indices 1130959 -- 1131458
GGTTGGGGACTGAATGATACCCCATGGTAGGTACGCTCTAGAGTGTAGTGGGATCCCAAAGAGAG
TATATGCTTAACTTAAGGGAGGGTAGAGGGGTAGAGCCGTCCAGTGAATAGATCTATCGCATAGA
ACTAGAGGTAAAGGTCCCGACGGCCTACTGGGCTAAGGCACGGGTAACGAGAGATCAGTTCTACT
CGACATGCTCGTCCTCGCGAACGGAGTAAATCATTTCCCCCTTCACGGGTAACGAGAGATCTAGC
TGAGGCCGAGAGACCTATTCGTTTTACCGTCGAGGAGGGATATATAAAGTGGGGCCCCTATCAGT
TCCTGGTCGAGTCAACCTGATCGGATCAATGGTTTATATATTCCATAGTCCCCAGATAGAGGGGC
GGTTGGGGAAGTCATTCATCAGATCGAGGGACTTCGGTTTGGATGGATGGAAAGTCCTACAGAAT
GGTAGACGTACTTTGCACGCTTGCTTAAGTAACTGAAATAGATCC
Right flanking sequence: Indices 1131497 -- 1131996
TACTTTCATTACCGTCGAACGTCTTTCGCTTTGGGTCGCGTTCCGTTACTTGCAGCTGCAACAAC
ATCCCTCCTCGAGAAATAGGAACCGCGAGGCATCTTGATCGGTCATAAAGTGAGACATCGAAATC
ACATTATAAAGAATGTGCCTTACAGTAAGGAAATCGAAACAGGGGATTCGGAACCGAAATAAGTA
TGTATAGGGAAATCCAGAAGATTAAGAATCTAATTGAATACTTGCCGGAACCGGCCCGACGAAAG
GCTGCGTTGACTGCCGGACTGTTGGTGCGTAAGGGATGGAACTTGTCATAAGAAAACCTGGAGAG
TGCCTAGTCTTCTTCATCGGAGTCAGTGTCCACCTGTATCACTGGGTTCTGGTCTGCTTGGGTTG
GCCCCTGCCCTACAGCTTCCAAATTCCATAGGGCTTTGAAAAGCACCTCATATTTTTGATCCATA
TGATCCAGCTTATCAAGAACGGCCTGCTGCTTGTAAAGAATAACC
Found at i:1131496 original size:14 final size:14
Alignment explanation
Indices: 1131461--1131489 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
1131451 ATAGATCCAC
1131461 CTACCTACGCTGCG
1 CTACCTACGCTGCG
1131475 CTACCTACGCT-CG
1 CTACCTACGCTGCG
1131488 CT
1 CT
1131490 GCTCTACTAC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 4 0.27
14 11 0.73
ACGTcount: A:0.14, C:0.45, G:0.17, T:0.24
Consensus pattern (14 bp):
CTACCTACGCTGCG
Left flanking sequence: Indices 1130961 -- 1131460
TTGGGGACTGAATGATACCCCATGGTAGGTACGCTCTAGAGTGTAGTGGGATCCCAAAGAGAGTA
TATGCTTAACTTAAGGGAGGGTAGAGGGGTAGAGCCGTCCAGTGAATAGATCTATCGCATAGAAC
TAGAGGTAAAGGTCCCGACGGCCTACTGGGCTAAGGCACGGGTAACGAGAGATCAGTTCTACTCG
ACATGCTCGTCCTCGCGAACGGAGTAAATCATTTCCCCCTTCACGGGTAACGAGAGATCTAGCTG
AGGCCGAGAGACCTATTCGTTTTACCGTCGAGGAGGGATATATAAAGTGGGGCCCCTATCAGTTC
CTGGTCGAGTCAACCTGATCGGATCAATGGTTTATATATTCCATAGTCCCCAGATAGAGGGGCGG
TTGGGGAAGTCATTCATCAGATCGAGGGACTTCGGTTTGGATGGATGGAAAGTCCTACAGAATGG
TAGACGTACTTTGCACGCTTGCTTAAGTAACTGAAATAGATCCAC
Right flanking sequence: Indices 1131490 -- 1131989
GCTCTACTACTTTCATTACCGTCGAACGTCTTTCGCTTTGGGTCGCGTTCCGTTACTTGCAGCTG
CAACAACATCCCTCCTCGAGAAATAGGAACCGCGAGGCATCTTGATCGGTCATAAAGTGAGACAT
CGAAATCACATTATAAAGAATGTGCCTTACAGTAAGGAAATCGAAACAGGGGATTCGGAACCGAA
ATAAGTATGTATAGGGAAATCCAGAAGATTAAGAATCTAATTGAATACTTGCCGGAACCGGCCCG
ACGAAAGGCTGCGTTGACTGCCGGACTGTTGGTGCGTAAGGGATGGAACTTGTCATAAGAAAACC
TGGAGAGTGCCTAGTCTTCTTCATCGGAGTCAGTGTCCACCTGTATCACTGGGTTCTGGTCTGCT
TGGGTTGGCCCCTGCCCTACAGCTTCCAAATTCCATAGGGCTTTGAAAAGCACCTCATATTTTTG
ATCCATATGATCCAGCTTATCAAGAACGGCCTGCTGCTTGTAAAG
Found at i:1132814 original size:17 final size:17
Alignment explanation
Indices: 1132792--1132826 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
1132782 AGAACGTCTA
1132792 AGGAGGAGCTTTGATGG
1 AGGAGGAGCTTTGATGG
1132809 AGGAGGAGCTTTGATGG
1 AGGAGGAGCTTTGATGG
1132826 A
1 A
1132827 CTGGGGACAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.26, C:0.06, G:0.46, T:0.23
Consensus pattern (17 bp):
AGGAGGAGCTTTGATGG
Left flanking sequence: Indices 1132292 -- 1132791
TGATCCATCGGCAAGTGCCCGTGCCCTCACTATCGACTATCGCCCTTCCTCTATCTATATACATT
ATAAAACCACCATGCCCCACCCTGATTGCAATCCCTGATTTCGCCCACCCTGATTATGAAGTTCC
ATCCCTGCTTTTGCAACCCAACATCCCAGTACTATTTCCCTTCGAACCAATCGCCTTCAACTTAC
TTAAGAAATATGGGCCCTGGCAGATAATGCGAATGCCCCGGTGCCTTTGATCCCGAACCAATCAC
CCCTTGATCCCCGACCCCTTGCGAATCGGTGCCTTTGATGAACGCCCCGGTGCCCTTGATCCTGG
ACCCATACCGAATCGGACTCCCTTGCTAACGAATGCCCACGCCTTGATAAGGGATAAGGTATAAG
GAATCAGGAATGCCTCAGACCTCTCACTCTTTCAGTATCTTTTGGATAGCTTTTCCTTATTCCTA
GCACCTCTTGCAGTTCGTTGTCCGTCCTCCGTAGGAGAACGTCTA
Right flanking sequence: Indices 1132827 -- 1133326
CTGGGGACAAAGTCCGATTGCAAAAGCGTTCTGAAAGGCCATGTTTCACTAATAAAAGATTCCAT
TTATAGTGTAATTGGATAGATTCTCCATTTCATAGATGAACTGGAATTTTGAGTTTTTCTATATC
AATCTACTTCATTTGACTTATTAGGAGAGATTGGTTCATTCTTTATATATGTCATTATGCATGAA
GAAATGGCTCACATTCCAGTAGGGAAATGCCTTCCATTAGCGGAAGTCCATCACTCTATTATATA
TGTTGCGGTGGTTGATCAGATGCATGAATCGAGCCTACTATATATGTCATTGTGCATGAAGAAAT
GGCTCACATTCTAGTCGCGGAATGCCTGAGTTTAGTAGCGGAATGACTGACATATATTCTATATG
TTGCGGTACCCCGACTCGGAAGCGTAATCAGAGAAAGGACCTTTAGGTGCTCGACTGTTAAGGAG
AGGGAGAGGAGAGGGAGAGGAGAGAAATATGTGAAAACCTCCGCC
Found at i:1133293 original size:11 final size:11
Alignment explanation
Indices: 1133277--1133305 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
1133267 TCGACTGTTA
1133277 AGGAGAGGGAG
1 AGGAGAGGGAG
1133288 AGGAGAGGGAG
1 AGGAGAGGGAG
1133299 AGGAGAG
1 AGGAGAG
1133306 AAATATGTGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.38, C:0.00, G:0.62, T:0.00
Consensus pattern (11 bp):
AGGAGAGGGAG
Left flanking sequence: Indices 1132777 -- 1133276
GTAGGAGAACGTCTAAGGAGGAGCTTTGATGGAGGAGGAGCTTTGATGGACTGGGGACAAAGTCC
GATTGCAAAAGCGTTCTGAAAGGCCATGTTTCACTAATAAAAGATTCCATTTATAGTGTAATTGG
ATAGATTCTCCATTTCATAGATGAACTGGAATTTTGAGTTTTTCTATATCAATCTACTTCATTTG
ACTTATTAGGAGAGATTGGTTCATTCTTTATATATGTCATTATGCATGAAGAAATGGCTCACATT
CCAGTAGGGAAATGCCTTCCATTAGCGGAAGTCCATCACTCTATTATATATGTTGCGGTGGTTGA
TCAGATGCATGAATCGAGCCTACTATATATGTCATTGTGCATGAAGAAATGGCTCACATTCTAGT
CGCGGAATGCCTGAGTTTAGTAGCGGAATGACTGACATATATTCTATATGTTGCGGTACCCCGAC
TCGGAAGCGTAATCAGAGAAAGGACCTTTAGGTGCTCGACTGTTA
Right flanking sequence: Indices 1133306 -- 1133805
AAATATGTGAAAACCTCCGCCAAGCTAAAATGACCAAATTAGTAGGGTTTGAACGCTCGACCAGG
GGGGAGAGGGAAAGATGTTCAACCCTCCGCCAAAGCATATATTCTCTATGTCATTATGCATTTCA
TATGGTTCGGGTCTGCTTAAGGCTGGGTGAAGGCTTCTGTTGGACTTGGCTGGTGATGAAGGCGG
AAGGTTGAATGCTTGTACGAACAATATCTCATTATATATGTCATTATGCATTCATTCGTTGCTCA
ATATTCCAAAACCTCCGCCAAGCTAATGTGACATGAATCAATTATGTTACGTAAATAACCCAACT
TTGAATAAGTGAGTCGAGGTCATTCATGCTCTTTCCCTTCCCTAATACGTCAATAATGGACTCGG
AAGGGCAGGTTCTCGTATGCATCGATCGGGTTTGATCCTGGCCCGGAACGAATGTATGCTGATCG
AACGGATACAGCTTACGTGCCTCCCGGGCAGAAGGGAAAAAGATG
Found at i:1136852 original size:20 final size:21
Alignment explanation
Indices: 1136812--1136852 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
1136802 AATATGTGAG
*
1136812 AAGGAAGGGTTACGATCATCA
1 AAGGAAGGGTGACGATCATCA
*
1136833 AAGGAAGGGTGA-GGTCATCA
1 AAGGAAGGGTGACGATCATCA
1136853 GAGCTAACAG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 7 0.39
21 11 0.61
ACGTcount: A:0.37, C:0.12, G:0.34, T:0.17
Consensus pattern (21 bp):
AAGGAAGGGTGACGATCATCA
Left flanking sequence: Indices 1136312 -- 1136811
CCGGGGTTAGACTCTTACCTTCGGGCAGTTATCCAGAAGCCCAGGATGCACTTTGAATAGTCTTT
TACCACCCCTTTTATATGCCCCGCTATATCGACTGGAGGTGGTTGAAACTTGGAGGTGGGTGAGG
TGGGTGAACCTAGAGGTGGGTTCAACTTGGAGGTGACTTAATCAATAGACTCTATCATCGGGATA
GGTCCAGCTGGTTAGGTACCGGGTATATACTCTTCGGGATCATGAGTTCTCACAGATGAGTTCTC
GGTTATAAGAGACTCTTCAATGGGTAGAAGGCGAAGCCGAACCTACATTCCCCACTTGTGAGTTC
ATGGCAATACACGAACACGAATGAGTTCATGGCTATGTTAGTTACGACATTTACCCGCCTCTATT
GGACTATGTGCGTTCTCAACTATCCGGGGGCCAAAGGTCTTGTTTCGGTGTGTTCACCTAAGCAG
ATAAGGTACCGAGCTCGTGGTAAGTAAATCCATCAAATATGTGAG
Right flanking sequence: Indices 1136853 -- 1137352
GAGCTAACAGAACGTGGTGAGTGTAAGGAGGGTCGGGGGTGTTGGCCAAAGGGCTCGGGTCCGGA
TAGATAGATTGATTTTCTTTATGGAAGCAAGGCATAGTTACCAAGGAAGCATAGTTACCAAGGAA
GCATAGTTCCGAGGTCTATGAACAAGGAAAGACATAAGCTAAAGGTTACTAATCCTGTGAGCTGA
CTTCTGAGCTGATCATCTATGTCCCTTCTGTTCATGGAAGGAAGGCGAAGCGGTACATCCATTCA
TCTATAAAGCTACCTTTAGTCCTTCACCACCGGGATAGATTTCTTTGACTGGCTGGCCATGTATG
GGAACACTAAGGAACGGGAACACTAAGGATCAAGGACGCGTACTTCTGAGCTGACTTATATGAGC
TTACTAAGTACGAGGACACCGTTAGGCCCAGCTACTTTAGAGTCAATTCTGTGCTACACTTTAGG
GGCCGAGGCAATACTTCAGTCTGAGGAAGGTCATAATATATATAT
Found at i:1136971 original size:17 final size:17
Alignment explanation
Indices: 1136949--1136990 Score: 84
Period size: 17 Copynumber: 2.5 Consensus size: 17
1136939 TGGAAGCAAG
1136949 GCATAGTTACCAAGGAA
1 GCATAGTTACCAAGGAA
1136966 GCATAGTTACCAAGGAA
1 GCATAGTTACCAAGGAA
1136983 GCATAGTT
1 GCATAGTT
1136991 CCGAGGTCTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.38, C:0.17, G:0.24, T:0.21
Consensus pattern (17 bp):
GCATAGTTACCAAGGAA
Left flanking sequence: Indices 1136449 -- 1136948
ACCTAGAGGTGGGTTCAACTTGGAGGTGACTTAATCAATAGACTCTATCATCGGGATAGGTCCAG
CTGGTTAGGTACCGGGTATATACTCTTCGGGATCATGAGTTCTCACAGATGAGTTCTCGGTTATA
AGAGACTCTTCAATGGGTAGAAGGCGAAGCCGAACCTACATTCCCCACTTGTGAGTTCATGGCAA
TACACGAACACGAATGAGTTCATGGCTATGTTAGTTACGACATTTACCCGCCTCTATTGGACTAT
GTGCGTTCTCAACTATCCGGGGGCCAAAGGTCTTGTTTCGGTGTGTTCACCTAAGCAGATAAGGT
ACCGAGCTCGTGGTAAGTAAATCCATCAAATATGTGAGAAGGAAGGGTTACGATCATCAAAGGAA
GGGTGAGGTCATCAGAGCTAACAGAACGTGGTGAGTGTAAGGAGGGTCGGGGGTGTTGGCCAAAG
GGCTCGGGTCCGGATAGATAGATTGATTTTCTTTATGGAAGCAAG
Right flanking sequence: Indices 1136991 -- 1137490
CCGAGGTCTATGAACAAGGAAAGACATAAGCTAAAGGTTACTAATCCTGTGAGCTGACTTCTGAG
CTGATCATCTATGTCCCTTCTGTTCATGGAAGGAAGGCGAAGCGGTACATCCATTCATCTATAAA
GCTACCTTTAGTCCTTCACCACCGGGATAGATTTCTTTGACTGGCTGGCCATGTATGGGAACACT
AAGGAACGGGAACACTAAGGATCAAGGACGCGTACTTCTGAGCTGACTTATATGAGCTTACTAAG
TACGAGGACACCGTTAGGCCCAGCTACTTTAGAGTCAATTCTGTGCTACACTTTAGGGGCCGAGG
CAATACTTCAGTCTGAGGAAGGTCATAATATATATATGAAATTCAACATCCCCGGATCCCCGGAA
CCCATATTTGGATATTCGGGGATCTGCTTGGGTCCGGTTCATGCTCATCTTCCTAATCCCTTTCA
TTGTTACGGAAGCCGTACTTCCATTCATAGAGTCGCCTATAACTG
Found at i:1141571 original size:25 final size:25
Alignment explanation
Indices: 1141537--1141585 Score: 98
Period size: 25 Copynumber: 2.0 Consensus size: 25
1141527 GGGGTGGAGA
1141537 AATGATGAGAAGTAAGCTTAGGGTG
1 AATGATGAGAAGTAAGCTTAGGGTG
1141562 AATGATGAGAAGTAAGCTTAGGGT
1 AATGATGAGAAGTAAGCTTAGGGT
1141586 TGGACCTCAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.37, C:0.04, G:0.35, T:0.24
Consensus pattern (25 bp):
AATGATGAGAAGTAAGCTTAGGGTG
Left flanking sequence: Indices 1141037 -- 1141536
CTCAGAATCATTTGCCTCCAGCGTAGTTTTAGAGCCAATTCACTAGTCGTGCCCAATCAAGTATA
GTTACCAGAGATGAAACGACACCTGTTATCGCACCACGACAAGGAACCACATAGAATAGCTCTGT
TGTATGGTTGCGATCCACCGTGTTTTGTTGGGTGCTATGGGTGCAGTTAACCGCCCCGTTCGTAG
CGGGCGCATGGATCACTGCTGTTGCTTTACACCATGGTTAGCTGGAGCACTGCTGTAGAGTACGT
ATCAGTGGTAGTAGGACACCGTAGCACTTATGTTGTTTGTAGAACGTCGTAATAGGCCCACCCAC
TAGTATAATGTGAGTTGGTATGAGTTTGCGCGTCTCACGATGATGTTGGTACGTATCACCGGCTG
TCTAGTCGTACGTAGCACTGCTTTGTGGGTCATATCCCTTTCTTAGTAGCTATGCCAGTCGTGGT
CTTGTTTAGTAGGCCCCGTTGTCTCAGTAGTTTGTGGGGTGGAGA
Right flanking sequence: Indices 1141586 -- 1142085
TGGACCTCAACCAATCTGCCCGCATTCAGTACGCTTTCAGTCCGCCTGCCCTGGACACTCACCCA
GAAAGAAGGAGTCTCATTCCCGCACAAGAGAGGAGGGAAAAAGACACCCGCGTGACCAACTGACA
CGACGAGAGAACGAACCCTTGAATGGAAAGAGAAGGGAAACACAGGGAGTGAGTGCTTGCCTGTA
TTCGGGATGGATAGTGCCCGGTGCCATAGATAAGTGCCCTTCGGGAAAGAACAGAAAGGCCAAGT
GCTTCTCGTCTTTCGTGCTGTATTCGCCAAAGTGCCTGAATACCTTATATACGCGCATTAAGCAA
TAGGCATATGAATGATGAATGAGTGGCGGACCTGTCTTCATGCATTATATACGCGCATTAAGCAA
TAGGCATATGAATGATGCAGGTTATCGCTAGTTCATTGACCAGTCGCTCACGCAAGACCAGTCAT
CCCAGCCAGCGGAGGGGTTATCTCGCTATTTCCGGTTGGCCTTTC
Found at i:1142817 original size:21 final size:21
Alignment explanation
Indices: 1142792--1142832 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
1142782 GCTAGTCCGT
1142792 CTGCCCTAGCCTGCTAGATTG
1 CTGCCCTAGCCTGCTAGATTG
1142813 CTGCCCTAGCCTGCTAGATT
1 CTGCCCTAGCCTGCTAGATT
1142833 TGTATGCCTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.15, C:0.34, G:0.22, T:0.29
Consensus pattern (21 bp):
CTGCCCTAGCCTGCTAGATTG
Left flanking sequence: Indices 1142292 -- 1142791
GTTTTTTTTACCTGACTGAGCCCGAGCCAGGTAAGTCTCTAGTAGCCAGGAAGGTCTTTCCCAAG
CCCCTAAGTTGTTAGTCCTTAGGTAAGAAGTTATATAAATCTTTAGCTTCTTACTTGTTAGCCCG
TGACTTTCATAACGAAGTGAACTCCTTGCCCCCCCGGAGGGACAAGCGGCTTCGCACCTTTATGG
TGTGGCATTGATTGATGGATGCCTAGTAAGTCTTTCCATCCATAAAGAGAAGTACTCTTTATTCT
GACTGAATGGAAAATAGAACCTCATATCTGGACCTTTCCTGACCAATGATACCTTTGCTTACCAA
TGCGTTCCTTACCTTTCTAAATCTGTGGTAGCCTACCTAAAGAAGGCGCTAAATTACCTATATAA
AGAAGGGACTTATACTTTGATTCCCCTAAATTGCATAGCTCAGGCTGGTCACTTCTATAGCTCAG
GGAAGACCTAGTGATCCCTTCCAATAACTACCACAGCTAGTCCGT
Right flanking sequence: Indices 1142833 -- 1143332
TGTATGCCTGGCCAGGTATCAGGAAGGGGTTTTTTATGCTATGCCCAGCTACGCCTCATAAGTCA
GTCAGGAAGTATACCCAGTGCCAAGGTCTGCCTAGCCTCGTGTAGTTGGTATCCCTTCCTCGGCC
ATCATGCCCGAAGGTCTGCCTGCCCGATAGCACTGCCTTATCTACCAGGTAAGACATAGTCTATT
CCTTACCAAACCAATGATACCTTTCCTTACCCGAGCGAGTGGTATAACCCGAGCGAGTAGTCTAA
TATAAGGGGCCACCACAGACAGATACCTTTCCTTATCTGTAGTATCTTCACTAACTCGTTTGGTG
CCAGACCCCCAACCTGGTGTCTATTTTATATGAGTCTCTTCTCACGAAGCCGAACTGCTTTAGAT
CTGGTCTTTATCGGAATATGGTTCCGCATTCAGCGAGATTAGCTCGGCAAATACGGAATGCGAAG
GAAAGGTTGACTTGGGTGGGGCATCACTCCATCTCCAAGCCAAGG
Found at i:1143734 original size:16 final size:15
Alignment explanation
Indices: 1143713--1143742 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
1143703 ACCCGGTATA
1143713 TTTCATTCATTACCCC
1 TTTCATTCA-TACCCC
1143729 TTTCATTCATACCC
1 TTTCATTCATACCC
1143743 TCTCACTTAC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.20, C:0.37, G:0.00, T:0.43
Consensus pattern (15 bp):
TTTCATTCATACCCC
Left flanking sequence: Indices 1143213 -- 1143712
TGCTTTAGATCTGGTCTTTATCGGAATATGGTTCCGCATTCAGCGAGATTAGCTCGGCAAATACG
GAATGCGAAGGAAAGGTTGACTTGGGTGGGGCATCACTCCATCTCCAAGCCAAGGGTGAAGGCTG
TAAATCATATCGCCGAGGAGTGTGGATTACTTATTTCAGTTAGCAAATAGGCCTCTATGAAATAG
AAACTAAATCTTTCACTGCTTTAATTGCTTCAATGGATACTACTGCTAGCTTTAGATCTTCTATA
GAAAACATACATACTGGTGCTTGCTCTGCTGCTACCTTTGCTACTTGATCTCCTCCTTTATCTGC
TGTTGGATCTACCCATGCTACCACCATTCCCACCAGAAGAGAGAGCCAATTTGCCATACGTGAGA
AACGATGATTGCATGTTCCCATCAGACAACAGAAGGGAAGTACTTCCCACAGAGAAGTCAGTCCT
TACCGCCGCCGAAAGAGAAGACCCCATAACCGCATACCCGGTATA
Right flanking sequence: Indices 1143743 -- 1144242
TCTCACTTACTTTCGGGTGAGATACGTTACGCCTTACCCTATTGCTCTGGCTGGCCTTACCTAAA
GCCCCTCAAAGCCTGAGCTAGCTCTGTGTTGATTATAACTTACCTTCAGGTAAGATCACCTCTCC
TTCGGGAGAGGATGGATAATAGGAATAAGCCGAAGAAGCCTCCTGGGTCGAAGGGTTACCATAAT
GGGGCGGTTTATAAGCCTCCTCCGTAAGTAGCTTGGTTGCTAGATACGGCTTAGTTATATATGAG
CATGTGGTTTCACAAGATTGCTGCTCGGCGAAGGCAGAATGACATTCAGATGCTTATTCAACTTG
GGGCGAGATAGCGTAATGACATATATAATTCATTACCAGCGATCTCATACGAAGAGAAGTGAGAA
TCGATCTCTCTCATTATCGATCTCTCTCATTTGCATCATGTCAGGTCAGATCTAATCATGCTAAG
TGCTCAAGCGTAATTACGTATATAACGAATGAATGCATAATGACA
Found at i:1144153 original size:16 final size:16
Alignment explanation
Indices: 1144132--1144163 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
1144122 AGAAGTGAGA
1144132 ATCGATCTCTCTCATT
1 ATCGATCTCTCTCATT
1144148 ATCGATCTCTCTCATT
1 ATCGATCTCTCTCATT
1144164 TGCATCATGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.19, C:0.31, G:0.06, T:0.44
Consensus pattern (16 bp):
ATCGATCTCTCTCATT
Left flanking sequence: Indices 1143632 -- 1144131
CAGAAGGGAAGTACTTCCCACAGAGAAGTCAGTCCTTACCGCCGCCGAAAGAGAAGACCCCATAA
CCGCATACCCGGTATATTTCATTCATTACCCCTTTCATTCATACCCTCTCACTTACTTTCGGGTG
AGATACGTTACGCCTTACCCTATTGCTCTGGCTGGCCTTACCTAAAGCCCCTCAAAGCCTGAGCT
AGCTCTGTGTTGATTATAACTTACCTTCAGGTAAGATCACCTCTCCTTCGGGAGAGGATGGATAA
TAGGAATAAGCCGAAGAAGCCTCCTGGGTCGAAGGGTTACCATAATGGGGCGGTTTATAAGCCTC
CTCCGTAAGTAGCTTGGTTGCTAGATACGGCTTAGTTATATATGAGCATGTGGTTTCACAAGATT
GCTGCTCGGCGAAGGCAGAATGACATTCAGATGCTTATTCAACTTGGGGCGAGATAGCGTAATGA
CATATATAATTCATTACCAGCGATCTCATACGAAGAGAAGTGAGA
Right flanking sequence: Indices 1144164 -- 1144663
TGCATCATGTCAGGTCAGATCTAATCATGCTAAGTGCTCAAGCGTAATTACGTATATAACGAATG
AATGCATAATGACATATGCCCATATATGCATGAACTCTCTATCGATCGAATCTGGTATGACACAT
ATCTCATTCATTCATGCATAATGACATATGCCCATATATGCATTGTCTGCTAAAGCGAAATGACA
TATATCGAGTCATGCCGTAATTACTGCTATAATTCATGAATGCATAATGACATATGCCCATAGGA
GCGTTGTCCGCTAAAGTGTAATTACGGCAGAAATGCATAATGACATATGCCCATAGCAGCTTCGG
GCAGGGGAGATGGAGCAGGAGGGAGGACATATTGATAAGGGACAGGGTGGGTATGAGTTCCCGGA
AAAGCCTTCCCTCTTCTTCCCCTTATCAACGGTGTTCAGCTGACTTGCACTGCACTGATAGACTC
TTATTGAAACTAGGCGCCTCATCTTTCTCTATTGCCAACTAATCC
Found at i:1149176 original size:9 final size:9
Alignment explanation
Indices: 1149162--1149234 Score: 146
Period size: 9 Copynumber: 8.1 Consensus size: 9
1149152 CGTTATCTCA
1149162 CGATGGCGG
1 CGATGGCGG
1149171 CGATGGCGG
1 CGATGGCGG
1149180 CGATGGCGG
1 CGATGGCGG
1149189 CGATGGCGG
1 CGATGGCGG
1149198 CGATGGCGG
1 CGATGGCGG
1149207 CGATGGCGG
1 CGATGGCGG
1149216 CGATGGCGG
1 CGATGGCGG
1149225 CGATGGCGG
1 CGATGGCGG
1149234 C
1 C
1149235 CCTTATGGTC
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 64 1.00
ACGTcount: A:0.11, C:0.23, G:0.55, T:0.11
Consensus pattern (9 bp):
CGATGGCGG
Left flanking sequence: Indices 1148662 -- 1149161
GACGTTGCACGAGAGCCATTACTTTACGTTCGGCTAACACTAAGAAGGCTACTCCTAGTAGAAGT
GGTATGATTATTCCAGGTATTTCAGCTAGAATAGCAATGTACGTTTCCGATTTCCTATTAACTCA
TGATCGGGGTCGCCCCGATCATGTCATGATATTTCTCTCATGATTGGGCCAATCATGATAAGGAT
GGGACCTATTCTCGAGGAGCAGCTCCAAAGGGAGAGGAACTATTCACTATTCAAGGTCATCCCCT
ATATTTCTTTCTTCCCCTCAAAGCCTGCGCATAGCTCAGGTAAGGTCATCCCCTTCCCCTCAAAG
AGCTAGAAGGTGGTAAGGTATAATCCTTACTTAGCGGAGCTAGCGGAAAATAAGGTCCAGGACGA
TGGCGGTGGTTCTTCAAGTTCCTCTCCTTACCAGTCGAGCCCCTGACGGACCTCTCTTTTGGGGC
CCCTCCCCCAAAAGAGAGTTGCTCGTCTCCTCCCACGTTATCTCA
Right flanking sequence: Indices 1149235 -- 1149734
CCTTATGGTCGAGCGAGAAATCGATGGCGGCCCTTATGGGAAGCTTTCTCTTTCACTACCACATG
CTCATATATAACTACCACCATAACAATGACTGGTCTTTCTTCTCTCTCTCTAGCCTACCACCATA
ACAATGACTGGTCTTTCTTCTCTCTCTCTAGCTAGGAAATCACTCTCATTATATATGTCATTACG
GCAGCCAATGAATTGGATTCAAGTTCAATTGACTTATTGGGTGGCCCCTCTCAAATAAGTAACTA
GCGCTGGTCGAGCCCTGCCGGCCCTTGATGCTTATTGGGTGGGGGGCGCTGGTCGAGCGTGCTCC
GCATCCTCTCCTCTCCTCTCGATGGCGGCCCTCTCCTCTCGATGGCGGCCCTCTCCTCTCCTTAT
CAGTCGAGCCCCCTCTCCTCTCCTTATCAGTCGAGCCCCCTAAAGGGTCCTTATTAGTCGAGCGT
GCTTACGCACCCTAAAGGGTCCTTAACAGTCGAGCACCTAAAGGT
Found at i:1149372 original size:43 final size:43
Alignment explanation
Indices: 1149311--1149396 Score: 172
Period size: 43 Copynumber: 2.0 Consensus size: 43
1149301 TCATATATAA
1149311 CTACCACCATAACAATGACTGGTCTTTCTTCTCTCTCTCTAGC
1 CTACCACCATAACAATGACTGGTCTTTCTTCTCTCTCTCTAGC
1149354 CTACCACCATAACAATGACTGGTCTTTCTTCTCTCTCTCTAGC
1 CTACCACCATAACAATGACTGGTCTTTCTTCTCTCTCTCTAGC
1149397 TAGGAAATCA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.21, C:0.35, G:0.09, T:0.35
Consensus pattern (43 bp):
CTACCACCATAACAATGACTGGTCTTTCTTCTCTCTCTCTAGC
Left flanking sequence: Indices 1148811 -- 1149310
CATGTCATGATATTTCTCTCATGATTGGGCCAATCATGATAAGGATGGGACCTATTCTCGAGGAG
CAGCTCCAAAGGGAGAGGAACTATTCACTATTCAAGGTCATCCCCTATATTTCTTTCTTCCCCTC
AAAGCCTGCGCATAGCTCAGGTAAGGTCATCCCCTTCCCCTCAAAGAGCTAGAAGGTGGTAAGGT
ATAATCCTTACTTAGCGGAGCTAGCGGAAAATAAGGTCCAGGACGATGGCGGTGGTTCTTCAAGT
TCCTCTCCTTACCAGTCGAGCCCCTGACGGACCTCTCTTTTGGGGCCCCTCCCCCAAAAGAGAGT
TGCTCGTCTCCTCCCACGTTATCTCACGATGGCGGCGATGGCGGCGATGGCGGCGATGGCGGCGA
TGGCGGCGATGGCGGCGATGGCGGCGATGGCGGCCCTTATGGTCGAGCGAGAAATCGATGGCGGC
CCTTATGGGAAGCTTTCTCTTTCACTACCACATGCTCATATATAA
Right flanking sequence: Indices 1149397 -- 1149896
TAGGAAATCACTCTCATTATATATGTCATTACGGCAGCCAATGAATTGGATTCAAGTTCAATTGA
CTTATTGGGTGGCCCCTCTCAAATAAGTAACTAGCGCTGGTCGAGCCCTGCCGGCCCTTGATGCT
TATTGGGTGGGGGGCGCTGGTCGAGCGTGCTCCGCATCCTCTCCTCTCCTCTCGATGGCGGCCCT
CTCCTCTCGATGGCGGCCCTCTCCTCTCCTTATCAGTCGAGCCCCCTCTCCTCTCCTTATCAGTC
GAGCCCCCTAAAGGGTCCTTATTAGTCGAGCGTGCTTACGCACCCTAAAGGGTCCTTAACAGTCG
AGCACCTAAAGGTCCTCTCCTCTTGGGTTTACTTATTGCCCCACCCAATAAGTCAACCTGGGGTC
GAGCACCTAAAGGTCCTTATCAGTCGAGCCCCCTAAAGGGCCCTATATTCTTTAGGGGTCACTCA
CTATTCATATGGTGAGGGTCCTTATCAGTCGAGCCTGCTTACGCA
Found at i:1149594 original size:20 final size:20
Alignment explanation
Indices: 1149569--1149619 Score: 102
Period size: 20 Copynumber: 2.5 Consensus size: 20
1149559 CGCATCCTCT
1149569 CCTCTCCTCTCGATGGCGGC
1 CCTCTCCTCTCGATGGCGGC
1149589 CCTCTCCTCTCGATGGCGGC
1 CCTCTCCTCTCGATGGCGGC
1149609 CCTCTCCTCTC
1 CCTCTCCTCTC
1149620 CTTATCAGTC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.04, C:0.49, G:0.20, T:0.27
Consensus pattern (20 bp):
CCTCTCCTCTCGATGGCGGC
Left flanking sequence: Indices 1149069 -- 1149568
GTTCCTCTCCTTACCAGTCGAGCCCCTGACGGACCTCTCTTTTGGGGCCCCTCCCCCAAAAGAGA
GTTGCTCGTCTCCTCCCACGTTATCTCACGATGGCGGCGATGGCGGCGATGGCGGCGATGGCGGC
GATGGCGGCGATGGCGGCGATGGCGGCGATGGCGGCCCTTATGGTCGAGCGAGAAATCGATGGCG
GCCCTTATGGGAAGCTTTCTCTTTCACTACCACATGCTCATATATAACTACCACCATAACAATGA
CTGGTCTTTCTTCTCTCTCTCTAGCCTACCACCATAACAATGACTGGTCTTTCTTCTCTCTCTCT
AGCTAGGAAATCACTCTCATTATATATGTCATTACGGCAGCCAATGAATTGGATTCAAGTTCAAT
TGACTTATTGGGTGGCCCCTCTCAAATAAGTAACTAGCGCTGGTCGAGCCCTGCCGGCCCTTGAT
GCTTATTGGGTGGGGGGCGCTGGTCGAGCGTGCTCCGCATCCTCT
Right flanking sequence: Indices 1149620 -- 1150119
CTTATCAGTCGAGCCCCCTCTCCTCTCCTTATCAGTCGAGCCCCCTAAAGGGTCCTTATTAGTCG
AGCGTGCTTACGCACCCTAAAGGGTCCTTAACAGTCGAGCACCTAAAGGTCCTCTCCTCTTGGGT
TTACTTATTGCCCCACCCAATAAGTCAACCTGGGGTCGAGCACCTAAAGGTCCTTATCAGTCGAG
CCCCCTAAAGGGCCCTATATTCTTTAGGGGTCACTCACTATTCATATGGTGAGGGTCCTTATCAG
TCGAGCCTGCTTACGCATCCTTATCAGTCGAGCACCTAAAGGTTAGGGTTTACTTATTGGTTTGG
GGGGTTAACAGTCGAGCATGCTTGCGCATCCTCTCCTCTCCTTAACAGTCGAGCACCTAAAGGTC
CTTATCAGTCGAGCACCTAAAGGTTAGGGTTTACTTATTGGTTTGGGGGGTTAACAGTCGAGCAT
GCTTGCGCATCCTTAACAGTCGAGCATGCTTGCGCATCCTCTCCT
Found at i:1149598 original size:25 final size:24
Alignment explanation
Indices: 1149564--1149621 Score: 79
Period size: 20 Copynumber: 2.5 Consensus size: 24
1149554 TGCTCCGCAT
1149564 CCTCTCCTCTCCTCTCGATGGCGG
1 CCTCTCCTCTCCTCTCGATGGCGG
1149588 ---C-CCTCTCCTCTCGATGGCGG
1 CCTCTCCTCTCCTCTCGATGGCGG
1149608 CCCTCTCCTCTCCT
1 -CCTCTCCTCTCCT
1149622 TATCAGTCGA
Statistics
Matches: 29, Mismatches: 0, Indels: 9
0.76 0.00 0.24
Matches are distributed among these distances:
20 19 0.66
21 1 0.03
24 1 0.03
25 8 0.28
ACGTcount: A:0.03, C:0.50, G:0.17, T:0.29
Consensus pattern (24 bp):
CCTCTCCTCTCCTCTCGATGGCGG
Left flanking sequence: Indices 1149064 -- 1149563
TTCAAGTTCCTCTCCTTACCAGTCGAGCCCCTGACGGACCTCTCTTTTGGGGCCCCTCCCCCAAA
AGAGAGTTGCTCGTCTCCTCCCACGTTATCTCACGATGGCGGCGATGGCGGCGATGGCGGCGATG
GCGGCGATGGCGGCGATGGCGGCGATGGCGGCGATGGCGGCCCTTATGGTCGAGCGAGAAATCGA
TGGCGGCCCTTATGGGAAGCTTTCTCTTTCACTACCACATGCTCATATATAACTACCACCATAAC
AATGACTGGTCTTTCTTCTCTCTCTCTAGCCTACCACCATAACAATGACTGGTCTTTCTTCTCTC
TCTCTAGCTAGGAAATCACTCTCATTATATATGTCATTACGGCAGCCAATGAATTGGATTCAAGT
TCAATTGACTTATTGGGTGGCCCCTCTCAAATAAGTAACTAGCGCTGGTCGAGCCCTGCCGGCCC
TTGATGCTTATTGGGTGGGGGGCGCTGGTCGAGCGTGCTCCGCAT
Right flanking sequence: Indices 1149622 -- 1150121
TATCAGTCGAGCCCCCTCTCCTCTCCTTATCAGTCGAGCCCCCTAAAGGGTCCTTATTAGTCGAG
CGTGCTTACGCACCCTAAAGGGTCCTTAACAGTCGAGCACCTAAAGGTCCTCTCCTCTTGGGTTT
ACTTATTGCCCCACCCAATAAGTCAACCTGGGGTCGAGCACCTAAAGGTCCTTATCAGTCGAGCC
CCCTAAAGGGCCCTATATTCTTTAGGGGTCACTCACTATTCATATGGTGAGGGTCCTTATCAGTC
GAGCCTGCTTACGCATCCTTATCAGTCGAGCACCTAAAGGTTAGGGTTTACTTATTGGTTTGGGG
GGTTAACAGTCGAGCATGCTTGCGCATCCTCTCCTCTCCTTAACAGTCGAGCACCTAAAGGTCCT
TATCAGTCGAGCACCTAAAGGTTAGGGTTTACTTATTGGTTTGGGGGGTTAACAGTCGAGCATGC
TTGCGCATCCTTAACAGTCGAGCATGCTTGCGCATCCTCTCCTTA
Found at i:1149646 original size:27 final size:27
Alignment explanation
Indices: 1149608--1149665 Score: 116
Period size: 27 Copynumber: 2.1 Consensus size: 27
1149598 TCGATGGCGG
1149608 CCCTCTCCTCTCCTTATCAGTCGAGCC
1 CCCTCTCCTCTCCTTATCAGTCGAGCC
1149635 CCCTCTCCTCTCCTTATCAGTCGAGCC
1 CCCTCTCCTCTCCTTATCAGTCGAGCC
1149662 CCCT
1 CCCT
1149666 AAAGGGTCCT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.10, C:0.50, G:0.10, T:0.29
Consensus pattern (27 bp):
CCCTCTCCTCTCCTTATCAGTCGAGCC
Left flanking sequence: Indices 1149108 -- 1149607
TTTTGGGGCCCCTCCCCCAAAAGAGAGTTGCTCGTCTCCTCCCACGTTATCTCACGATGGCGGCG
ATGGCGGCGATGGCGGCGATGGCGGCGATGGCGGCGATGGCGGCGATGGCGGCGATGGCGGCCCT
TATGGTCGAGCGAGAAATCGATGGCGGCCCTTATGGGAAGCTTTCTCTTTCACTACCACATGCTC
ATATATAACTACCACCATAACAATGACTGGTCTTTCTTCTCTCTCTCTAGCCTACCACCATAACA
ATGACTGGTCTTTCTTCTCTCTCTCTAGCTAGGAAATCACTCTCATTATATATGTCATTACGGCA
GCCAATGAATTGGATTCAAGTTCAATTGACTTATTGGGTGGCCCCTCTCAAATAAGTAACTAGCG
CTGGTCGAGCCCTGCCGGCCCTTGATGCTTATTGGGTGGGGGGCGCTGGTCGAGCGTGCTCCGCA
TCCTCTCCTCTCCTCTCGATGGCGGCCCTCTCCTCTCGATGGCGG
Right flanking sequence: Indices 1149666 -- 1150165
AAAGGGTCCTTATTAGTCGAGCGTGCTTACGCACCCTAAAGGGTCCTTAACAGTCGAGCACCTAA
AGGTCCTCTCCTCTTGGGTTTACTTATTGCCCCACCCAATAAGTCAACCTGGGGTCGAGCACCTA
AAGGTCCTTATCAGTCGAGCCCCCTAAAGGGCCCTATATTCTTTAGGGGTCACTCACTATTCATA
TGGTGAGGGTCCTTATCAGTCGAGCCTGCTTACGCATCCTTATCAGTCGAGCACCTAAAGGTTAG
GGTTTACTTATTGGTTTGGGGGGTTAACAGTCGAGCATGCTTGCGCATCCTCTCCTCTCCTTAAC
AGTCGAGCACCTAAAGGTCCTTATCAGTCGAGCACCTAAAGGTTAGGGTTTACTTATTGGTTTGG
GGGGTTAACAGTCGAGCATGCTTGCGCATCCTTAACAGTCGAGCATGCTTGCGCATCCTCTCCTT
ATCAGTCGAGCCTGCTTACGCATCCTCTCCCTATGGTCGAGCACC
Found at i:1149675 original size:27 final size:27
Alignment explanation
Indices: 1149617--1149687 Score: 79
Period size: 27 Copynumber: 2.6 Consensus size: 27
1149607 GCCCTCTCCT
*** *
1149617 CTCCTTATCAGTCGAGCCCCCTCTCCT
1 CTCCTTATCAGTCGAGCCCCCTAAACG
*
1149644 CTCCTTATCAGTCGAGCCCCCTAAAGG
1 CTCCTTATCAGTCGAGCCCCCTAAACG
* *
1149671 GTCCTTATTAGTCGAGC
1 CTCCTTATCAGTCGAGC
1149688 GTGCTTACGC
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 37 1.00
ACGTcount: A:0.17, C:0.38, G:0.17, T:0.28
Consensus pattern (27 bp):
CTCCTTATCAGTCGAGCCCCCTAAACG
Left flanking sequence: Indices 1149117 -- 1149616
CCCTCCCCCAAAAGAGAGTTGCTCGTCTCCTCCCACGTTATCTCACGATGGCGGCGATGGCGGCG
ATGGCGGCGATGGCGGCGATGGCGGCGATGGCGGCGATGGCGGCGATGGCGGCCCTTATGGTCGA
GCGAGAAATCGATGGCGGCCCTTATGGGAAGCTTTCTCTTTCACTACCACATGCTCATATATAAC
TACCACCATAACAATGACTGGTCTTTCTTCTCTCTCTCTAGCCTACCACCATAACAATGACTGGT
CTTTCTTCTCTCTCTCTAGCTAGGAAATCACTCTCATTATATATGTCATTACGGCAGCCAATGAA
TTGGATTCAAGTTCAATTGACTTATTGGGTGGCCCCTCTCAAATAAGTAACTAGCGCTGGTCGAG
CCCTGCCGGCCCTTGATGCTTATTGGGTGGGGGGCGCTGGTCGAGCGTGCTCCGCATCCTCTCCT
CTCCTCTCGATGGCGGCCCTCTCCTCTCGATGGCGGCCCTCTCCT
Right flanking sequence: Indices 1149688 -- 1150187
GTGCTTACGCACCCTAAAGGGTCCTTAACAGTCGAGCACCTAAAGGTCCTCTCCTCTTGGGTTTA
CTTATTGCCCCACCCAATAAGTCAACCTGGGGTCGAGCACCTAAAGGTCCTTATCAGTCGAGCCC
CCTAAAGGGCCCTATATTCTTTAGGGGTCACTCACTATTCATATGGTGAGGGTCCTTATCAGTCG
AGCCTGCTTACGCATCCTTATCAGTCGAGCACCTAAAGGTTAGGGTTTACTTATTGGTTTGGGGG
GTTAACAGTCGAGCATGCTTGCGCATCCTCTCCTCTCCTTAACAGTCGAGCACCTAAAGGTCCTT
ATCAGTCGAGCACCTAAAGGTTAGGGTTTACTTATTGGTTTGGGGGGTTAACAGTCGAGCATGCT
TGCGCATCCTTAACAGTCGAGCATGCTTGCGCATCCTCTCCTTATCAGTCGAGCCTGCTTACGCA
TCCTCTCCCTATGGTCGAGCACCTAAAGGTCCTTAAGGTCGAGCA
Found at i:1150018 original size:25 final size:25
Alignment explanation
Indices: 1149983--1150033 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
1149973 TCCTCTCCTC
1149983 TCCTTAACAGTCGAGCACCTAAAGG
1 TCCTTAACAGTCGAGCACCTAAAGG
*
1150008 TCCTTATCAGTCGAGCACCTAAAGG
1 TCCTTAACAGTCGAGCACCTAAAGG
1150033 T
1 T
1150034 TAGGGTTTAC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (25 bp):
TCCTTAACAGTCGAGCACCTAAAGG
Left flanking sequence: Indices 1149483 -- 1149982
AATAAGTAACTAGCGCTGGTCGAGCCCTGCCGGCCCTTGATGCTTATTGGGTGGGGGGCGCTGGT
CGAGCGTGCTCCGCATCCTCTCCTCTCCTCTCGATGGCGGCCCTCTCCTCTCGATGGCGGCCCTC
TCCTCTCCTTATCAGTCGAGCCCCCTCTCCTCTCCTTATCAGTCGAGCCCCCTAAAGGGTCCTTA
TTAGTCGAGCGTGCTTACGCACCCTAAAGGGTCCTTAACAGTCGAGCACCTAAAGGTCCTCTCCT
CTTGGGTTTACTTATTGCCCCACCCAATAAGTCAACCTGGGGTCGAGCACCTAAAGGTCCTTATC
AGTCGAGCCCCCTAAAGGGCCCTATATTCTTTAGGGGTCACTCACTATTCATATGGTGAGGGTCC
TTATCAGTCGAGCCTGCTTACGCATCCTTATCAGTCGAGCACCTAAAGGTTAGGGTTTACTTATT
GGTTTGGGGGGTTAACAGTCGAGCATGCTTGCGCATCCTCTCCTC
Right flanking sequence: Indices 1150034 -- 1150533
TAGGGTTTACTTATTGGTTTGGGGGGTTAACAGTCGAGCATGCTTGCGCATCCTTAACAGTCGAG
CATGCTTGCGCATCCTCTCCTTATCAGTCGAGCCTGCTTACGCATCCTCTCCCTATGGTCGAGCA
CCTAAAGGTCCTTAAGGTCGAGCACCTAAAGGTTAGGGTTTACTTATTGCCCCACCCAATAAGTA
AACCCTAACAGTCGAGCCTGCTTGCGCATCCTTATCAGTCGAGCAAATAAATTACCTTATGGTCG
AGCAACTCAAGTTCCTCTCCTTAACAGTCGAGCCCTGCCGGACCTAGATTTCTTCCCCTCAAAGC
CTGAGCAGAGCGAAAAAGAAGGTCCTGAAAGAAAGGACCTGACTCTCTCTCCCAATTGGTAGGTA
ATAGTGGTCGATGCTAAAGGGGGAGTGACATTCGCAACTCACTCTATGTTCCCGGCCTGGGTGAT
ATTCCATCTTTCTTTCCAAGAGTACTACCCCGTACGTAGTCCATG
Found at i:1150098 original size:27 final size:27
Alignment explanation
Indices: 1150060--1150114 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
1150050 GTTTGGGGGG
1150060 TTAACAGTCGAGCATGCTTGCGCATCC
1 TTAACAGTCGAGCATGCTTGCGCATCC
1150087 TTAACAGTCGAGCATGCTTGCGCATCC
1 TTAACAGTCGAGCATGCTTGCGCATCC
1150114 T
1 T
1150115 CTCCTTATCA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.22, C:0.29, G:0.22, T:0.27
Consensus pattern (27 bp):
TTAACAGTCGAGCATGCTTGCGCATCC
Left flanking sequence: Indices 1149560 -- 1150059
GCATCCTCTCCTCTCCTCTCGATGGCGGCCCTCTCCTCTCGATGGCGGCCCTCTCCTCTCCTTAT
CAGTCGAGCCCCCTCTCCTCTCCTTATCAGTCGAGCCCCCTAAAGGGTCCTTATTAGTCGAGCGT
GCTTACGCACCCTAAAGGGTCCTTAACAGTCGAGCACCTAAAGGTCCTCTCCTCTTGGGTTTACT
TATTGCCCCACCCAATAAGTCAACCTGGGGTCGAGCACCTAAAGGTCCTTATCAGTCGAGCCCCC
TAAAGGGCCCTATATTCTTTAGGGGTCACTCACTATTCATATGGTGAGGGTCCTTATCAGTCGAG
CCTGCTTACGCATCCTTATCAGTCGAGCACCTAAAGGTTAGGGTTTACTTATTGGTTTGGGGGGT
TAACAGTCGAGCATGCTTGCGCATCCTCTCCTCTCCTTAACAGTCGAGCACCTAAAGGTCCTTAT
CAGTCGAGCACCTAAAGGTTAGGGTTTACTTATTGGTTTGGGGGG
Right flanking sequence: Indices 1150115 -- 1150614
CTCCTTATCAGTCGAGCCTGCTTACGCATCCTCTCCCTATGGTCGAGCACCTAAAGGTCCTTAAG
GTCGAGCACCTAAAGGTTAGGGTTTACTTATTGCCCCACCCAATAAGTAAACCCTAACAGTCGAG
CCTGCTTGCGCATCCTTATCAGTCGAGCAAATAAATTACCTTATGGTCGAGCAACTCAAGTTCCT
CTCCTTAACAGTCGAGCCCTGCCGGACCTAGATTTCTTCCCCTCAAAGCCTGAGCAGAGCGAAAA
AGAAGGTCCTGAAAGAAAGGACCTGACTCTCTCTCCCAATTGGTAGGTAATAGTGGTCGATGCTA
AAGGGGGAGTGACATTCGCAACTCACTCTATGTTCCCGGCCTGGGTGATATTCCATCTTTCTTTC
CAAGAGTACTACCCCGTACGTAGTCCATGTCTGGGGAGGTGCGGTAGATAGGTCTCCCACTTAGA
TCCCCGTTAGCATATTCGAGAGAGATAAGGGATTGCTCCGTTAGG
Found at i:1150127 original size:32 final size:32
Alignment explanation
Indices: 1150064--1150163 Score: 113
Period size: 32 Copynumber: 3.3 Consensus size: 32
1150054 GGGGGGTTAA
*
1150064 CAGTCGAGCATGCTTGCGCA-----TCCTTAA
1 CAGTCGAGCATGCTTGCGCATCCTCTCCTTAT
1150091 CAGTCGAGCATGCTTGCGCATCCTCTCCTTAT
1 CAGTCGAGCATGCTTGCGCATCCTCTCCTTAT
* * *
1150123 CAGTCGAGCCTGCTTACGCATCCTCTCCCTAT
1 CAGTCGAGCATGCTTGCGCATCCTCTCCTTAT
*
1150155 -GGTCGAGCA
1 CAGTCGAGCA
1150164 CCTAAAGGTC
Statistics
Matches: 62, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
27 20 0.32
31 7 0.11
32 35 0.56
ACGTcount: A:0.18, C:0.34, G:0.21, T:0.27
Consensus pattern (32 bp):
CAGTCGAGCATGCTTGCGCATCCTCTCCTTAT
Left flanking sequence: Indices 1149564 -- 1150063
CCTCTCCTCTCCTCTCGATGGCGGCCCTCTCCTCTCGATGGCGGCCCTCTCCTCTCCTTATCAGT
CGAGCCCCCTCTCCTCTCCTTATCAGTCGAGCCCCCTAAAGGGTCCTTATTAGTCGAGCGTGCTT
ACGCACCCTAAAGGGTCCTTAACAGTCGAGCACCTAAAGGTCCTCTCCTCTTGGGTTTACTTATT
GCCCCACCCAATAAGTCAACCTGGGGTCGAGCACCTAAAGGTCCTTATCAGTCGAGCCCCCTAAA
GGGCCCTATATTCTTTAGGGGTCACTCACTATTCATATGGTGAGGGTCCTTATCAGTCGAGCCTG
CTTACGCATCCTTATCAGTCGAGCACCTAAAGGTTAGGGTTTACTTATTGGTTTGGGGGGTTAAC
AGTCGAGCATGCTTGCGCATCCTCTCCTCTCCTTAACAGTCGAGCACCTAAAGGTCCTTATCAGT
CGAGCACCTAAAGGTTAGGGTTTACTTATTGGTTTGGGGGGTTAA
Right flanking sequence: Indices 1150164 -- 1150663
CCTAAAGGTCCTTAAGGTCGAGCACCTAAAGGTTAGGGTTTACTTATTGCCCCACCCAATAAGTA
AACCCTAACAGTCGAGCCTGCTTGCGCATCCTTATCAGTCGAGCAAATAAATTACCTTATGGTCG
AGCAACTCAAGTTCCTCTCCTTAACAGTCGAGCCCTGCCGGACCTAGATTTCTTCCCCTCAAAGC
CTGAGCAGAGCGAAAAAGAAGGTCCTGAAAGAAAGGACCTGACTCTCTCTCCCAATTGGTAGGTA
ATAGTGGTCGATGCTAAAGGGGGAGTGACATTCGCAACTCACTCTATGTTCCCGGCCTGGGTGAT
ATTCCATCTTTCTTTCCAAGAGTACTACCCCGTACGTAGTCCATGTCTGGGGAGGTGCGGTAGAT
AGGTCTCCCACTTAGATCCCCGTTAGCATATTCGAGAGAGATAAGGGATTGCTCCGTTAGGTAGG
TTTTTACGGTCCGGAGCCAGCCGGTAATGGACCTCGCGGACAGCC
Found at i:1152370 original size:120 final size:120
Alignment explanation
Indices: 1152157--1152396 Score: 480
Period size: 120 Copynumber: 2.0 Consensus size: 120
1152147 CTCTGAGACG
1152157 CTTGCTTTCGTAGAGGGCCGGATCCCCATTATTTCCCAATTTTGTTCTGCCAAAATGAATTACAT
1 CTTGCTTTCGTAGAGGGCCGGATCCCCATTATTTCCCAATTTTGTTCTGCCAAAATGAATTACAT
1152222 TACTTACTTCGATTGCTCGATTTGGAACAGCTAGCTTTTGGCGATTCTTGGTACC
66 TACTTACTTCGATTGCTCGATTTGGAACAGCTAGCTTTTGGCGATTCTTGGTACC
1152277 CTTGCTTTCGTAGAGGGCCGGATCCCCATTATTTCCCAATTTTGTTCTGCCAAAATGAATTACAT
1 CTTGCTTTCGTAGAGGGCCGGATCCCCATTATTTCCCAATTTTGTTCTGCCAAAATGAATTACAT
1152342 TACTTACTTCGATTGCTCGATTTGGAACAGCTAGCTTTTGGCGATTCTTGGTACC
66 TACTTACTTCGATTGCTCGATTTGGAACAGCTAGCTTTTGGCGATTCTTGGTACC
1152397 GTTCGAATAC
Statistics
Matches: 120, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
120 120 1.00
ACGTcount: A:0.21, C:0.23, G:0.19, T:0.37
Consensus pattern (120 bp):
CTTGCTTTCGTAGAGGGCCGGATCCCCATTATTTCCCAATTTTGTTCTGCCAAAATGAATTACAT
TACTTACTTCGATTGCTCGATTTGGAACAGCTAGCTTTTGGCGATTCTTGGTACC
Left flanking sequence: Indices 1151657 -- 1152156
TTGCTTTTCCTATGAAATGAAACTCACTCTTTCCAACCAAATAACCATTCCCGACCCCCACGAAC
GAAAATGAGAGTTCCTTAAGTTCAGATGGATGAAAAAATCTTGCTTGAATGAAGCAAGCGTGATT
GGGCTTCATTGTTGGTTCGACCGGAATACTTGCTTGGGGTCGGGGTTGTTTAGCTCCCTCCTTGT
TTTTTCGGGTTTCCCCGCCTCACCGGCGAGTCTTTTCCTATGTATGATCATAAGGCCCACCATTA
CCATACCGAGAGAATGTCGAAGTAAGGTTGAGACCCTCATTCAATATATGGAATAGCATTGGCTA
CTAAACTCGCTCCCTCCTTACTTAGCTGAGTAGGGAGGGGCTAGCGCGCGATTCTAGACCAAAGA
CAGTAGCTTACTCCGATCAATTCACTTCATCCGGTTCAAAGAGCCTTTATATCTATCTGGGGCAA
AGCTTGAGTAACTCATCGAAGCGGTAAACCAAGCACTCTGAGACG
Right flanking sequence: Indices 1152397 -- 1152896
GTTCGAATACACCAGATTCATATGCATGCAAGAAGGGGCGGTTCTCTCTTTCATAGCAGTGAACG
GAGACAACCGATACAAGTGAACAGATACAACCGATACACCTCTACCTACCTATAGGAAGGAGTTG
GCCCAAACCATTCCCATTCTATGCCCCGGCATCCGAAAAAAAGAGGTGGCTCCGAAACACTTAGG
GAAGAGTGGCTCACTGTCGCTCACTGTCGTTCCTACACCTAATCGATCGTTCCGCTGTTTCCATC
CACTAGCTGACTCATTATGCGAAAGGTACGCCGTTATACGCTTGTGCAGGCCCCCGTCAATGCTT
TATAATAGGAGGCCGAAAGGAGAAAGTTCATGGGAGCATGCTGCCCCACCTGAACCATAGAGAGT
CGAGTCTCTTATATAAGTGAAAACCACCACTTTACAAAACAACACCTTACGAGCATTCATTCATT
ATATACGTAATTACGTCATTCGAGATATGTCATTCTGCCTTCGCA
Found at i:1152491 original size:23 final size:23
Alignment explanation
Indices: 1152454--1152499 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
1152444 CTTTCATAGC
*
1152454 AGTGAACGGAGACAACCGATACA
1 AGTGAACAGAGACAACCGATACA
*
1152477 AGTGAACAGATACAACCGATACA
1 AGTGAACAGAGACAACCGATACA
1152500 CCTCTACCTA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.46, C:0.22, G:0.22, T:0.11
Consensus pattern (23 bp):
AGTGAACAGAGACAACCGATACA
Left flanking sequence: Indices 1151954 -- 1152453
CATTCAATATATGGAATAGCATTGGCTACTAAACTCGCTCCCTCCTTACTTAGCTGAGTAGGGAG
GGGCTAGCGCGCGATTCTAGACCAAAGACAGTAGCTTACTCCGATCAATTCACTTCATCCGGTTC
AAAGAGCCTTTATATCTATCTGGGGCAAAGCTTGAGTAACTCATCGAAGCGGTAAACCAAGCACT
CTGAGACGCTTGCTTTCGTAGAGGGCCGGATCCCCATTATTTCCCAATTTTGTTCTGCCAAAATG
AATTACATTACTTACTTCGATTGCTCGATTTGGAACAGCTAGCTTTTGGCGATTCTTGGTACCCT
TGCTTTCGTAGAGGGCCGGATCCCCATTATTTCCCAATTTTGTTCTGCCAAAATGAATTACATTA
CTTACTTCGATTGCTCGATTTGGAACAGCTAGCTTTTGGCGATTCTTGGTACCGTTCGAATACAC
CAGATTCATATGCATGCAAGAAGGGGCGGTTCTCTCTTTCATAGC
Right flanking sequence: Indices 1152500 -- 1152999
CCTCTACCTACCTATAGGAAGGAGTTGGCCCAAACCATTCCCATTCTATGCCCCGGCATCCGAAA
AAAAGAGGTGGCTCCGAAACACTTAGGGAAGAGTGGCTCACTGTCGCTCACTGTCGTTCCTACAC
CTAATCGATCGTTCCGCTGTTTCCATCCACTAGCTGACTCATTATGCGAAAGGTACGCCGTTATA
CGCTTGTGCAGGCCCCCGTCAATGCTTTATAATAGGAGGCCGAAAGGAGAAAGTTCATGGGAGCA
TGCTGCCCCACCTGAACCATAGAGAGTCGAGTCTCTTATATAAGTGAAAACCACCACTTTACAAA
ACAACACCTTACGAGCATTCATTCATTATATACGTAATTACGTCATTCGAGATATGTCATTCTGC
CTTCGCAGAGCAGCAATATCTGTTTGGGGTCATTGGGGTCTTACCTTATAGTCAAGGAGACACGA
AACTGACTGAACCTAAACTACCACATGCTCATATATAACTACCAC
Found at i:1153326 original size:5 final size:5
Alignment explanation
Indices: 1153316--1153341 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
1153306 GAGTTGTTCG
1153316 TCTCC TCTCC TCTCC TCTCC TCTCC T
1 TCTCC TCTCC TCTCC TCTCC TCTCC T
1153342 TAACAGTCGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.00, C:0.58, G:0.00, T:0.42
Consensus pattern (5 bp):
TCTCC
Left flanking sequence: Indices 1152816 -- 1153315
CTTTACAAAACAACACCTTACGAGCATTCATTCATTATATACGTAATTACGTCATTCGAGATATG
TCATTCTGCCTTCGCAGAGCAGCAATATCTGTTTGGGGTCATTGGGGTCTTACCTTATAGTCAAG
GAGACACGAAACTGACTGAACCTAAACTACCACATGCTCATATATAACTACCACCATAACAATGA
CTGGTCTTTCTTCTCTCTCTCTAGCTAGGAAATCAATATCATTATATATGTCATTATGCATGAAT
GAGATATCTCTTTGTATACGATATTCTTCTCCAGTTCCTCTCCTCTCCTTATCAGTCGAGCCCCC
TAAAGGGTCCTGTTAGTCGAGTCACTTAACGTACCTCTCCCATAGTTCTTCTCGTTTCAATTTAC
TTATTGCCCCACCCAATAAGTCAACCCTACCAGTCGAGCCCCTGACGGACCTCCCTTTTGGGGCG
TATGGGGTGCTTATTTGGTGAGGGGCCCCAAAAGAGAGTTGTTCG
Right flanking sequence: Indices 1153342 -- 1153841
TAACAGTCGAGCACCTAAAGGTCCTCTCCTCTTGGGTTTACTTATTGCCCCACCCAATAAGTCAA
CCTGGGGTCGAGCACCTAAAGGTCCTTATCAGTCGAGCCCCCTAAAGGGCCCTATATTCTTTAGG
GGTCACTCACTATTCATATGGTGAGGGTCCTTATCAGTCGAGCCTGCTTACGCATCCTTATCAGT
CGAGCACCTAAAGGTTAGGGTTTACTTATTGGTTTGGGGGGTTAACAGTCGAGCATGCTTGCGCA
TCCTCTCCTCTCCTTAACAGTCGAGCACCTAAAGGTCCTTATCAGTCGAGCACCTAAAGGTTAGG
GTTTACTTATTGGTTTGGGGGGTTAACAGTCGAGCATGCTTGCGCATCCTTATCAGTCGAGCCTG
CTTAAGCATCCTTTGGTCGAGCGGCTTCGCTCCTTTTCATCATGTCTCTTTCCATTTTAGGCAGG
ATGGACGGGTGCTCGATGAAATGAAGGGAGGGCCGGGAAAAAGGT
Found at i:1153647 original size:25 final size:25
Alignment explanation
Indices: 1153612--1153662 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
1153602 TCCTCTCCTC
1153612 TCCTTAACAGTCGAGCACCTAAAGG
1 TCCTTAACAGTCGAGCACCTAAAGG
*
1153637 TCCTTATCAGTCGAGCACCTAAAGG
1 TCCTTAACAGTCGAGCACCTAAAGG
1153662 T
1 T
1153663 TAGGGTTTAC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (25 bp):
TCCTTAACAGTCGAGCACCTAAAGG
Left flanking sequence: Indices 1153112 -- 1153611
CCTCTCCTCTCCTTATCAGTCGAGCCCCCTAAAGGGTCCTGTTAGTCGAGTCACTTAACGTACCT
CTCCCATAGTTCTTCTCGTTTCAATTTACTTATTGCCCCACCCAATAAGTCAACCCTACCAGTCG
AGCCCCTGACGGACCTCCCTTTTGGGGCGTATGGGGTGCTTATTTGGTGAGGGGCCCCAAAAGAG
AGTTGTTCGTCTCCTCTCCTCTCCTCTCCTCTCCTTAACAGTCGAGCACCTAAAGGTCCTCTCCT
CTTGGGTTTACTTATTGCCCCACCCAATAAGTCAACCTGGGGTCGAGCACCTAAAGGTCCTTATC
AGTCGAGCCCCCTAAAGGGCCCTATATTCTTTAGGGGTCACTCACTATTCATATGGTGAGGGTCC
TTATCAGTCGAGCCTGCTTACGCATCCTTATCAGTCGAGCACCTAAAGGTTAGGGTTTACTTATT
GGTTTGGGGGGTTAACAGTCGAGCATGCTTGCGCATCCTCTCCTC
Right flanking sequence: Indices 1153663 -- 1154162
TAGGGTTTACTTATTGGTTTGGGGGGTTAACAGTCGAGCATGCTTGCGCATCCTTATCAGTCGAG
CCTGCTTAAGCATCCTTTGGTCGAGCGGCTTCGCTCCTTTTCATCATGTCTCTTTCCATTTTAGG
CAGGATGGACGGGTGCTCGATGAAATGAAGGGAGGGCCGGGAAAAAGGTAACCTGCGTAGACCTA
ATTGCTTTGCAATATTGATATTATCCCGCCCGTGTGCATGCGTGCGTTAAGTAAGTCTCTAGGTG
GGTAGCGGTGGTATAGCTTGTTATAGAAGTGTGGGTATAGATCGGTGTGCCTGTGCTGGTCTATT
CGGTCTAGAAAGATTGATTAGGTTGGGATTGGTGGGTCTAGTCTGTGTAAGGTAACCCGATCCAA
GGCAAACGATCCAAGGTGTCCGCTCTAAGGTTGGAAGTTGTAGCAGGATGGCTTTCAAGGATCAA
TGGCTAAGGCGAGCCTGGTTGTGTAGGACCGTAAGAAGAGAAGTG
Found at i:1153733 original size:27 final size:27
Alignment explanation
Indices: 1153693--1153744 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
1153683 GGGGGGTTAA
**
1153693 CAGTCGAGCATGCTTGCGCATCCTTAT
1 CAGTCGAGCATGCTTAAGCATCCTTAT
*
1153720 CAGTCGAGCCTGCTTAAGCATCCTT
1 CAGTCGAGCATGCTTAAGCATCCTT
1153745 TGGTCGAGCG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.19, C:0.31, G:0.21, T:0.29
Consensus pattern (27 bp):
CAGTCGAGCATGCTTAAGCATCCTTAT
Left flanking sequence: Indices 1153193 -- 1153692
CGTTTCAATTTACTTATTGCCCCACCCAATAAGTCAACCCTACCAGTCGAGCCCCTGACGGACCT
CCCTTTTGGGGCGTATGGGGTGCTTATTTGGTGAGGGGCCCCAAAAGAGAGTTGTTCGTCTCCTC
TCCTCTCCTCTCCTCTCCTTAACAGTCGAGCACCTAAAGGTCCTCTCCTCTTGGGTTTACTTATT
GCCCCACCCAATAAGTCAACCTGGGGTCGAGCACCTAAAGGTCCTTATCAGTCGAGCCCCCTAAA
GGGCCCTATATTCTTTAGGGGTCACTCACTATTCATATGGTGAGGGTCCTTATCAGTCGAGCCTG
CTTACGCATCCTTATCAGTCGAGCACCTAAAGGTTAGGGTTTACTTATTGGTTTGGGGGGTTAAC
AGTCGAGCATGCTTGCGCATCCTCTCCTCTCCTTAACAGTCGAGCACCTAAAGGTCCTTATCAGT
CGAGCACCTAAAGGTTAGGGTTTACTTATTGGTTTGGGGGGTTAA
Right flanking sequence: Indices 1153745 -- 1154244
TGGTCGAGCGGCTTCGCTCCTTTTCATCATGTCTCTTTCCATTTTAGGCAGGATGGACGGGTGCT
CGATGAAATGAAGGGAGGGCCGGGAAAAAGGTAACCTGCGTAGACCTAATTGCTTTGCAATATTG
ATATTATCCCGCCCGTGTGCATGCGTGCGTTAAGTAAGTCTCTAGGTGGGTAGCGGTGGTATAGC
TTGTTATAGAAGTGTGGGTATAGATCGGTGTGCCTGTGCTGGTCTATTCGGTCTAGAAAGATTGA
TTAGGTTGGGATTGGTGGGTCTAGTCTGTGTAAGGTAACCCGATCCAAGGCAAACGATCCAAGGT
GTCCGCTCTAAGGTTGGAAGTTGTAGCAGGATGGCTTTCAAGGATCAATGGCTAAGGCGAGCCTG
GTTGTGTAGGACCGTAAGAAGAGAAGTGATATAAGTGTTGGTTGCCGCTATAGAGCAGCTTTTCA
AGTTCAATCAGTTGCACATTCCATGGTGATATAGCTAGCTCTAGA
Found at i:1156131 original size:50 final size:52
Alignment explanation
Indices: 1156073--1156185 Score: 140
Period size: 50 Copynumber: 2.1 Consensus size: 52
1156063 GTTCTACGTG
* *
1156073 CTGTTCTTGATTAACCACGCCCAGGAAGCA-GG-TGATTCTAAGTGTGTTAC
1 CTGTTCTTGATCAACCACGCCCAGAAAGCAGGGTTGATTCTAAGTGTGTTAC
* *
1156123 CTGTTCTTGATCCACCATGCCCAGAAAGCAGGTGGTTTTGATTCTAAGTGTGTTAC
1 CTGTTCTTGATCAACCACGCCCAGAAAGCA-G-GG--TTGATTCTAAGTGTGTTAC
1156179 CTGTTCT
1 CTGTTCT
1156186 CAATAACAAC
Statistics
Matches: 53, Mismatches: 4, Indels: 6
0.84 0.06 0.10
Matches are distributed among these distances:
50 26 0.49
53 2 0.04
56 25 0.47
ACGTcount: A:0.21, C:0.22, G:0.23, T:0.34
Consensus pattern (52 bp):
CTGTTCTTGATCAACCACGCCCAGAAAGCAGGGTTGATTCTAAGTGTGTTAC
Left flanking sequence: Indices 1155573 -- 1156072
ATTCCCCTGATCACGTACCCATCGTTACCAGCCATCGTCCCCTTCATCCACTGGAAGATCGCACG
CACGTCCCCAGCACTCCCCAGTCCACCATAACCGCATTCTTACACATACCCGCATTCTATAGCAT
TCTCGCATTCAGTTACCCCGCAACAAACAACTCACAGGGGCTATTGGGTCTACTCAATGGGCCTA
ATCCACAGGGAGGGAAATAATCACTGGCGATGGCGATGGCAATGGCGATACTCCTACAGAGAGAG
GGGGCTATTCTCTACAGAGGTGGATACTCATACAGAGACACAATGAGGTACACGTTAGAGGTTAC
ACATTGAGGTTAGGTTACACGTAGAGCAACACATTCCGCATATACACTCTGATTGCCAGGAGCTA
TTCGTGCCCAGTTCGACGTGAACAGTAGTTGATCCCCCGTACCCAAAAGGGGGTGTTCCTGCTTT
ACTAGTTGCAGTACGTGACCAGGATAGGAGGAGTTGTTCTACGTG
Right flanking sequence: Indices 1156186 -- 1156685
CAATAACAACATTTGCCCAGGAAGGTGAGTCAGTCAGGTTAGTCAGGTTAGGGCCATTACTGATA
CGTGACCAGAATGATTTGATTCTATGTTACCTGTTTTCTCAATACCCCGTGCCCTTGAATGAGGT
TTTCGTGCCATGTTATACGTTACCGAAGGACAGTCAGCCATGGGGAGTAGCACCAGTTAGCGAGT
CATTGATTTTCCACATCAGCGGTCCCATATTTGAAGGCTGTCGCATAGTCCCACATCGGCAGAGA
GCAGAGATAGGGGCGGTTCAACGGACGGATGATGTTGCAGTGTGAGGTGGACCAATATAGAGAGG
TTTCTTATTTGCTGCTGGCCGGTTTATGATATGTTCGCTTACCGGTATATGTCCCAGAAGTGTTG
TATGCAAAGGTGTAACGATAGCGAGAGAGAGAGGTATGGTTATGATGTTGTTGATTGCCGGTAGA
TGTCCCCAGAAGGTTGTACAGATGATGTGGTCTACGAAGGTGTGC
Found at i:1156212 original size:56 final size:54
Alignment explanation
Indices: 1156105--1156212 Score: 119
Period size: 56 Copynumber: 1.9 Consensus size: 54
1156095 AGGAAGCAGG
** * * *
1156105 TGATTCTAAGTGTGTTACCTGTTCTTGATCCACCATGCCCAGAAAGCAGGTGGTTT
1 TGATTCTAAGTGTGTTACCTGTTCTCAATACAACATGCCCAG--AGAAGGTGGTTT
1156161 TGATTCTAAGTGTGTTACCTGTTCTCAATAACAACATTTGCCCAG-GAAGGTG
1 TGATTCTAAGTGTGTTACCTGTTCTCAAT-ACAACA--TGCCCAGAGAAGGTG
1156213 AGTCAGTCAG
Statistics
Matches: 44, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
56 33 0.75
57 4 0.09
59 7 0.16
ACGTcount: A:0.24, C:0.20, G:0.22, T:0.33
Consensus pattern (54 bp):
TGATTCTAAGTGTGTTACCTGTTCTCAATACAACATGCCCAGAGAAGGTGGTTT
Left flanking sequence: Indices 1155605 -- 1156104
CATCGTCCCCTTCATCCACTGGAAGATCGCACGCACGTCCCCAGCACTCCCCAGTCCACCATAAC
CGCATTCTTACACATACCCGCATTCTATAGCATTCTCGCATTCAGTTACCCCGCAACAAACAACT
CACAGGGGCTATTGGGTCTACTCAATGGGCCTAATCCACAGGGAGGGAAATAATCACTGGCGATG
GCGATGGCAATGGCGATACTCCTACAGAGAGAGGGGGCTATTCTCTACAGAGGTGGATACTCATA
CAGAGACACAATGAGGTACACGTTAGAGGTTACACATTGAGGTTAGGTTACACGTAGAGCAACAC
ATTCCGCATATACACTCTGATTGCCAGGAGCTATTCGTGCCCAGTTCGACGTGAACAGTAGTTGA
TCCCCCGTACCCAAAAGGGGGTGTTCCTGCTTTACTAGTTGCAGTACGTGACCAGGATAGGAGGA
GTTGTTCTACGTGCTGTTCTTGATTAACCACGCCCAGGAAGCAGG
Right flanking sequence: Indices 1156213 -- 1156712
AGTCAGTCAGGTTAGTCAGGTTAGGGCCATTACTGATACGTGACCAGAATGATTTGATTCTATGT
TACCTGTTTTCTCAATACCCCGTGCCCTTGAATGAGGTTTTCGTGCCATGTTATACGTTACCGAA
GGACAGTCAGCCATGGGGAGTAGCACCAGTTAGCGAGTCATTGATTTTCCACATCAGCGGTCCCA
TATTTGAAGGCTGTCGCATAGTCCCACATCGGCAGAGAGCAGAGATAGGGGCGGTTCAACGGACG
GATGATGTTGCAGTGTGAGGTGGACCAATATAGAGAGGTTTCTTATTTGCTGCTGGCCGGTTTAT
GATATGTTCGCTTACCGGTATATGTCCCAGAAGTGTTGTATGCAAAGGTGTAACGATAGCGAGAG
AGAGAGGTATGGTTATGATGTTGTTGATTGCCGGTAGATGTCCCCAGAAGGTTGTACAGATGATG
TGGTCTACGAAGGTGTGCTGCTTGCCGGTTTACCGCTTGCCCCCA
Found at i:1157978 original size:15 final size:13
Alignment explanation
Indices: 1157945--1157982 Score: 76
Period size: 13 Copynumber: 2.9 Consensus size: 13
1157935 TAGAGAGAAA
1157945 ACCTCTCTATACT
1 ACCTCTCTATACT
1157958 ACCTCTCTATACT
1 ACCTCTCTATACT
1157971 ACCTCTCTATAC
1 ACCTCTCTATAC
1157983 CATATGGATC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.24, C:0.39, G:0.00, T:0.37
Consensus pattern (13 bp):
ACCTCTCTATACT
Left flanking sequence: Indices 1157445 -- 1157944
TGCTAAATAAGGATGACTTCTTGGGGGATTGGATTTGAAACACCCCTTACCGTGCTAACAAAAAA
GGCAAATTCAGATTCCCAAGGCTTAGAGGCTACGCTTTGCTCCTGCTAGGGTTGGTAAATATGAA
AGCACCCTCTAACTGCCCTACCTCTTCAAGTAGAATTTCTAACCGCCTTTTCTTTAAGGTCAATG
GCAGGAGGGCGCAGCTGTACTTCCATAGGATCGGGTAGAGCACGGAGCCCTGTGAGATGCCTATG
TCAGTATTCGTATAGATGGTACCGTCTGATCCCATTAGAGTATTGGTCATAAACATCCGTATTAG
GTTCAAGAAGGCTTCATCCGCTACGTGTTGGCTAAGAAGATCCATCAGTAGCTCATGTCGGGCTC
TATCAACTTGAAATGATTGTTGCCACCACCTAAAGAGATAGTGACTTAATAACTTGGACAAACGC
CTTAAGCATCCAACCCTAACCAACTCTCTCTACCATAGAGAGAAA
Right flanking sequence: Indices 1157983 -- 1158482
CATATGGATCCTAAACCCATTAGTAATTAGTCCAAGGGAGAGAGAGAAGGGACTATGGATGAAGG
GACTATGGATCTAAACCTAAGGAGTTATGCAGGGCGATCCACATGGTGCCGCAGGAGAAAACATG
GCAAAGATACTTCAAGAAGGATGGAAAGGATCATACCAATCCTAAGTATGCTGGAAAGCCTAAAC
TACCCACTACCTTGACTCCTTCTATATAAGCAGCGAAAGGAAATCCACTAATATGAAGAAGATGC
TATTGCCACTGGCCTTCCTGTAAAACAACCTTGCCCCCCGGCCCCTCCTTTTTATCCTCTGGCGG
CTTCGCACCTTGAATAGTTCCAAACTCATAGATAGATATGGCCAGCCGAATTGACTACCGAAAAG
CACTTAGCATGCCTACCCCTATTACCTTTAGCGTGCCAGAGATTCAACTGAAGTCTTGGCTAAAA
GCTCCCCTATTACCTCTAGCGGGTTCGATCCCCCCAGTGTACCCC
Found at i:1158048 original size:15 final size:15
Alignment explanation
Indices: 1158028--1158057 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
1158018 GGGAGAGAGA
1158028 GAAGGGACTATGGAT
1 GAAGGGACTATGGAT
1158043 GAAGGGACTATGGAT
1 GAAGGGACTATGGAT
1158058 CTAAACCTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.33, C:0.07, G:0.40, T:0.20
Consensus pattern (15 bp):
GAAGGGACTATGGAT
Left flanking sequence: Indices 1157528 -- 1158027
AGGCTTAGAGGCTACGCTTTGCTCCTGCTAGGGTTGGTAAATATGAAAGCACCCTCTAACTGCCC
TACCTCTTCAAGTAGAATTTCTAACCGCCTTTTCTTTAAGGTCAATGGCAGGAGGGCGCAGCTGT
ACTTCCATAGGATCGGGTAGAGCACGGAGCCCTGTGAGATGCCTATGTCAGTATTCGTATAGATG
GTACCGTCTGATCCCATTAGAGTATTGGTCATAAACATCCGTATTAGGTTCAAGAAGGCTTCATC
CGCTACGTGTTGGCTAAGAAGATCCATCAGTAGCTCATGTCGGGCTCTATCAACTTGAAATGATT
GTTGCCACCACCTAAAGAGATAGTGACTTAATAACTTGGACAAACGCCTTAAGCATCCAACCCTA
ACCAACTCTCTCTACCATAGAGAGAAAACCTCTCTATACTACCTCTCTATACTACCTCTCTATAC
CATATGGATCCTAAACCCATTAGTAATTAGTCCAAGGGAGAGAGA
Right flanking sequence: Indices 1158058 -- 1158557
CTAAACCTAAGGAGTTATGCAGGGCGATCCACATGGTGCCGCAGGAGAAAACATGGCAAAGATAC
TTCAAGAAGGATGGAAAGGATCATACCAATCCTAAGTATGCTGGAAAGCCTAAACTACCCACTAC
CTTGACTCCTTCTATATAAGCAGCGAAAGGAAATCCACTAATATGAAGAAGATGCTATTGCCACT
GGCCTTCCTGTAAAACAACCTTGCCCCCCGGCCCCTCCTTTTTATCCTCTGGCGGCTTCGCACCT
TGAATAGTTCCAAACTCATAGATAGATATGGCCAGCCGAATTGACTACCGAAAAGCACTTAGCAT
GCCTACCCCTATTACCTTTAGCGTGCCAGAGATTCAACTGAAGTCTTGGCTAAAAGCTCCCCTAT
TACCTCTAGCGGGTTCGATCCCCCCAGTGTACCCCCAAGTGTAAGGAGCTCGGCATTGAATACCT
ATTTCACGAGCATTATCTATTCCACTAGCATTCTCTATTTCACTA
Found at i:1158542 original size:18 final size:18
Alignment explanation
Indices: 1158511--1158559 Score: 71
Period size: 18 Copynumber: 2.7 Consensus size: 18
1158501 CATTGAATAC
*
1158511 CTATTTCACGAGCATTAT
1 CTATTTCACTAGCATTAT
* *
1158529 CTATTCCACTAGCATTCT
1 CTATTTCACTAGCATTAT
1158547 CTATTTCACTAGC
1 CTATTTCACTAGC
1158560 CATAGTTGTA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.24, C:0.29, G:0.08, T:0.39
Consensus pattern (18 bp):
CTATTTCACTAGCATTAT
Left flanking sequence: Indices 1158011 -- 1158510
AGTCCAAGGGAGAGAGAGAAGGGACTATGGATGAAGGGACTATGGATCTAAACCTAAGGAGTTAT
GCAGGGCGATCCACATGGTGCCGCAGGAGAAAACATGGCAAAGATACTTCAAGAAGGATGGAAAG
GATCATACCAATCCTAAGTATGCTGGAAAGCCTAAACTACCCACTACCTTGACTCCTTCTATATA
AGCAGCGAAAGGAAATCCACTAATATGAAGAAGATGCTATTGCCACTGGCCTTCCTGTAAAACAA
CCTTGCCCCCCGGCCCCTCCTTTTTATCCTCTGGCGGCTTCGCACCTTGAATAGTTCCAAACTCA
TAGATAGATATGGCCAGCCGAATTGACTACCGAAAAGCACTTAGCATGCCTACCCCTATTACCTT
TAGCGTGCCAGAGATTCAACTGAAGTCTTGGCTAAAAGCTCCCCTATTACCTCTAGCGGGTTCGA
TCCCCCCAGTGTACCCCCAAGTGTAAGGAGCTCGGCATTGAATAC
Right flanking sequence: Indices 1158560 -- 1159059
CATAGTTGTATATGAACGTGTAGTACCTAATATATATTAGGAAGGAAGTGGCAATATATAGGAGG
TGGTTGGTTGGCATTTCCCAAAGAGCCAGTATTGAAATAAATGGATCTGAATTGGAGAGGGTGGC
GTTGGAGCGGTTTGACGCGAAGGTTTGTTGTCCAGGCTTGGTGTTATCATATTCCACTGAGGTTG
CAATTCAAGTTGGTAATCTATAATATGGGCCCTGAAAGCTTTGTTAGGGAGCGGCTGAGTGAGTG
CCCGGCGTGTCAAATATCGGGCATATGCCTTGCTAAATACTGTGCGGGTAAAGAATAGACAGTCC
CCTCCTCTGCGCCCCTCCTTGAACCTTGACTTTCTTGTCCCCAGCCCTACTGGTTGTACGTTGGA
ATCCAAACCAACACAAGCTTGCCCGTATATATATATATATATTCCCAGGGGAGACAGAGTGATTG
GAAGTGTACCTTTTGGCCGTGACCTATTGGCACGGATGAGTCTGG
Found at i:1162404 original size:46 final size:46
Alignment explanation
Indices: 1162337--1162427 Score: 182
Period size: 46 Copynumber: 2.0 Consensus size: 46
1162327 GTCGAGCGTT
1162337 CGTTACCTCACCCTATATTTCTTACTTAGGGGCGGAGCCACTCACC
1 CGTTACCTCACCCTATATTTCTTACTTAGGGGCGGAGCCACTCACC
1162383 CGTTACCTCACCCTATATTTCTTACTTAGGGGCGGAGCCACTCAC
1 CGTTACCTCACCCTATATTTCTTACTTAGGGGCGGAGCCACTCAC
1162428 TATTCATATG
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 45 1.00
ACGTcount: A:0.20, C:0.34, G:0.18, T:0.29
Consensus pattern (46 bp):
CGTTACCTCACCCTATATTTCTTACTTAGGGGCGGAGCCACTCACC
Left flanking sequence: Indices 1161837 -- 1162336
GTTAGGACCATACTAACGAAGGATCCCACACGTCTATGAAAGGGTTCATGAAAGGCCCAAGTTGA
AGCCCCAACCGTATGCCCCAAGCGTATGAAAACCCAAGGTCTTAGAAGCAACCCATCCAAGCGTA
ATAAAAGTGAAGTAGTTTGAGGATGCGTAAGCAGGCTCGACCACCGCTAGTTACTTATTTGAGAG
GGGCACAAAATAAGTCAATTGAAAGCACCCTTTCTTTTGATTATGCCGTATCGTCTTTATACACT
TCTTACTGCTATTATTTAGGCCCCCTCCCTTCGGACAACATTGACTGAATGAAAGAAAGTTCCGA
CAACGTTGAGGTCATACATATTCCCATACCCTGAAAGTTTTCTACTACCCATCGTTCGGAGAAGA
ATTACATGTCCTACCCTGGCATAGATGGCCCAACAACAAGGTTGAATCCATCCTAAACCTTACCC
ATTTTCGTTTTTCAGGTAAGGGCCCTCTCCCGGGGGTCGAGCGTT
Right flanking sequence: Indices 1162428 -- 1162927
TATTCATATGGTGAGGGTGCGTAAGCACACTCGACTGCCTTTGGTTACTTATTTGAGAGGAGGGG
AGAGGGTGCGTTAGCACACTCACTATTCATATGGTGAGGGTGCGTAAGCACACTCGACTGTCCAG
GACCTTTAGGTGCTCGACCATAAGGACCTTTAGGTGCTCGACCTTAAGGGAGAGGGAGAGGAGAG
GGGTCACTCACTATTCATATGGTGAGGGATCTTCTTTATAACCCCGGGCACCCACCTTTTGATTA
GATTATGCAGAGAGAACTTCATTGTTTCTTCTTCGCCTCTTCGATCCTCACCCTTCGGCTAGTAT
AGGACGGGACTTGTATTCTTAAGAAACCTTATCTTATGCGCGTTAGCGGGCACCCACCTCGCCTT
CAGTTTCATATTCTTGGAGCATCCCATCTTCACCTTTTGAGGGATATGGATGGGGCTCTTATCAC
AATGACTGACTGTTTGCCGAGCGTGTTCGAACAAGTTGATACATA
Found at i:1162585 original size:24 final size:24
Alignment explanation
Indices: 1162556--1162606 Score: 93
Period size: 24 Copynumber: 2.1 Consensus size: 24
1162546 TCGACTGTCC
1162556 AGGACCTTTAGGTGCTCGACCATA
1 AGGACCTTTAGGTGCTCGACCATA
*
1162580 AGGACCTTTAGGTGCTCGACCTTA
1 AGGACCTTTAGGTGCTCGACCATA
1162604 AGG
1 AGG
1162607 GAGAGGGAGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (24 bp):
AGGACCTTTAGGTGCTCGACCATA
Left flanking sequence: Indices 1162056 -- 1162555
GCACCCTTTCTTTTGATTATGCCGTATCGTCTTTATACACTTCTTACTGCTATTATTTAGGCCCC
CTCCCTTCGGACAACATTGACTGAATGAAAGAAAGTTCCGACAACGTTGAGGTCATACATATTCC
CATACCCTGAAAGTTTTCTACTACCCATCGTTCGGAGAAGAATTACATGTCCTACCCTGGCATAG
ATGGCCCAACAACAAGGTTGAATCCATCCTAAACCTTACCCATTTTCGTTTTTCAGGTAAGGGCC
CTCTCCCGGGGGTCGAGCGTTCGTTACCTCACCCTATATTTCTTACTTAGGGGCGGAGCCACTCA
CCCGTTACCTCACCCTATATTTCTTACTTAGGGGCGGAGCCACTCACTATTCATATGGTGAGGGT
GCGTAAGCACACTCGACTGCCTTTGGTTACTTATTTGAGAGGAGGGGAGAGGGTGCGTTAGCACA
CTCACTATTCATATGGTGAGGGTGCGTAAGCACACTCGACTGTCC
Right flanking sequence: Indices 1162607 -- 1163106
GAGAGGGAGAGGAGAGGGGTCACTCACTATTCATATGGTGAGGGATCTTCTTTATAACCCCGGGC
ACCCACCTTTTGATTAGATTATGCAGAGAGAACTTCATTGTTTCTTCTTCGCCTCTTCGATCCTC
ACCCTTCGGCTAGTATAGGACGGGACTTGTATTCTTAAGAAACCTTATCTTATGCGCGTTAGCGG
GCACCCACCTCGCCTTCAGTTTCATATTCTTGGAGCATCCCATCTTCACCTTTTGAGGGATATGG
ATGGGGCTCTTATCACAATGACTGACTGTTTGCCGAGCGTGTTCGAACAAGTTGATACATACATC
CTGACTGAAGAAACCGTTCAGGCCAGACCCTGACAGGAGGACCAGGAAGGTTGAGTGAGACATAT
ATCCCCATCCCGTTTTCCCTGTTTTCCCATAGTAGACATCTTCTTACTGTTTGCTGAACGTTTCG
GACAAGGTTGATACATCCTGAAGGAATATTTAGGTCATACATACC
Found at i:1164678 original size:25 final size:25
Alignment explanation
Indices: 1164628--1164678 Score: 77
Period size: 25 Copynumber: 2.0 Consensus size: 25
1164618 CAGAACAATT
*
1164628 GGGATATTCTTCCCTTTTCATGGCA
1 GGGATATTCTTCCCTTTTCATCGCA
1164653 GGGATATTCTTCCCTTTT-AGTCGCA
1 GGGATATTCTTCCCTTTTCA-TCGCA
1164678 G
1 G
1164679 TGATCATAGT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
24 1 0.04
25 23 0.96
ACGTcount: A:0.16, C:0.24, G:0.22, T:0.39
Consensus pattern (25 bp):
GGGATATTCTTCCCTTTTCATCGCA
Left flanking sequence: Indices 1164128 -- 1164627
AGGCACCTTTTCCGAATGGCGTTGGTTGTCACTAGACATTAGGAATTGATCCCTGGCACGACGCG
CAAAGAAAGAAGCTTCTCAAGCGTGATTGCCCTTGCCCCTCCTATTTCTTCTCTGGCGGCTTCGC
ACCTTTGCTATAGCAAATATTTTGATTTGAGAATGCTTCTTTTCACCTTTCTCTCTCGGTACTTG
TACGCTATCGCTCTCCCGTAATATGACTGCTTTACGTTTCCCAATGAATAGTTATTACCTATGTA
ATAACACCTATCGCTAATTGGACCTTCCTTATCGCTGGCGCTCACTGCACTCCGCGTTCTTCCTC
TCCTTATCAGTCGAGTCACTAACGTACCTCTCCCGGGGGTCGAGCAACTAAAGTTCCTCTTCTTC
CCTCTTCTATCGCTATCTAGGAAGTCGATCCGCGAAAGCTAGACCAAACCAATAACCAACCCAAC
CTGCGCATTACCAAATCGATGGGTCCATAAGCAAACAGAACAATT
Right flanking sequence: Indices 1164679 -- 1165178
TGATCATAGTCATGGTCCTAACCCATAGGACCTACCTAATCGCCGCTAACGAGTCAGTATTTTGT
TACAGGGGCCTAAAAAGACTATCTACAAATTACCCAGGTACCTTATTTAGAAGAAGAAAAAGAAC
GTACGGGCTTGATTGAAGGCTTGTAACTAGCTCTTTCCACCGGCCAAGCAGTAAGGAACGAACCT
TCTTGCCAAGGTAAGGTTTTTTCACTTGCTTTCAGGCTGGTCACGCTCGCTTCTAATTACGTTCT
GAAGAAAGCTTGCCCTACTTGTCAGCGCGCAATTAAGGGAAAGATATTCAGAAACCAACCTCCCA
GAACTAGAACTATTTTGAACTAACCAACCCTAACTTGAAGGCTTGATAGTGACAAAAAGCGAGGA
AAGAAGCTGTTACGTTGAGTTACAAAGAGTGAAAAAAAGCAGATACAAAGAGTGACAATGACAAA
TAGTGACAAATAGTGACAAAAGCATATTCATTATGACTTACTTAA
Found at i:1165140 original size:10 final size:10
Alignment explanation
Indices: 1165127--1165153 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
1165117 AGAGTGACAA
1165127 TGACAAATAG
1 TGACAAATAG
1165137 TGACAAATAG
1 TGACAAATAG
1165147 TGACAAA
1 TGACAAA
1165154 AGCATATTCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.52, C:0.11, G:0.19, T:0.19
Consensus pattern (10 bp):
TGACAAATAG
Left flanking sequence: Indices 1164627 -- 1165126
TGGGATATTCTTCCCTTTTCATGGCAGGGATATTCTTCCCTTTTAGTCGCAGTGATCATAGTCAT
GGTCCTAACCCATAGGACCTACCTAATCGCCGCTAACGAGTCAGTATTTTGTTACAGGGGCCTAA
AAAGACTATCTACAAATTACCCAGGTACCTTATTTAGAAGAAGAAAAAGAACGTACGGGCTTGAT
TGAAGGCTTGTAACTAGCTCTTTCCACCGGCCAAGCAGTAAGGAACGAACCTTCTTGCCAAGGTA
AGGTTTTTTCACTTGCTTTCAGGCTGGTCACGCTCGCTTCTAATTACGTTCTGAAGAAAGCTTGC
CCTACTTGTCAGCGCGCAATTAAGGGAAAGATATTCAGAAACCAACCTCCCAGAACTAGAACTAT
TTTGAACTAACCAACCCTAACTTGAAGGCTTGATAGTGACAAAAAGCGAGGAAAGAAGCTGTTAC
GTTGAGTTACAAAGAGTGAAAAAAAGCAGATACAAAGAGTGACAA
Right flanking sequence: Indices 1165154 -- 1165653
AGCATATTCATTATGACTTACTTAAAGCACCTTGCCTAACAGAACATATAAAACAGCCTGAGAGG
CAAGGCAGCAGACCCTCATCAATTGATTACTCGTTGAACTCATGATGGTGGAAAGGCGACTACGG
GCTGGCCGGAGCTAGAAACAAAGGATCTTGCCTGGGGAAGGAACTATATAGCAACTTGGGGCTGG
CCAACCCCACCCACTGAAGGCTGGCCGTAGCTCGGATGGACAAACTGCTTTCTCATTGAACCGTT
TCATACACTCTATTCTCCTTGCCCTCACCCACTCTCCGGTTAGGGAGTAGAATCAAGGGATAGAT
AACTTCACCCACGGTTGGCCTAACTCTGCTGTCCATCGAGAAGTAGGAAAGCTATCCAGCCTATA
GCTAGTCGATGGTAACAGCATTAACTACAGCCCCACCCCCACTGAGACTAACCTTCACTGAACAC
CCCAGGGAGGGAGAAGCCTACTTACTGCCTGAGCCCAACCCGATA
Found at i:1170305 original size:13 final size:13
Alignment explanation
Indices: 1170287--1170311 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1170277 ATGAACAGCC
1170287 GCCATCGAGAGTT
1 GCCATCGAGAGTT
1170300 GCCATCGAGAGT
1 GCCATCGAGAGT
1170312 GATAGCGAGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.24, G:0.32, T:0.20
Consensus pattern (13 bp):
GCCATCGAGAGTT
Left flanking sequence: Indices 1169787 -- 1170286
GGGTGGGATACCTCCAGAGGTGGGCCTGGGGATTTGACAAGGAGTCAATAAAGGCCCACATTGAC
AAGGGTAAAGGCACCTAAGGCAGGATGCCGATGATTCTCGTTCATTCTCGGACTTCAGACCCACC
TCATTATCGGAGTTAATATCCACTTCCCTATCGGAGTTATTTACTACTTTTACCCTAATTCTGGC
TACCTTCCCTCTCGCTAATCGTACCGGCCCTTCTATACGAATGAAGAGAACCAGCCTTCCTTCTA
TCCTTCCTTCTATACAAACGAAGAGAACCAGCCTTCCTTCGGGATCAAAGAACTCACTGGCAAGA
GACAGAATGAATAGAGAATAAGCTTCCCTCTCACGCTCTTCCTCGACCACACTTAGCCAGACTTC
CTCGACCACTCGTGAGACTTCCTTCCCGGGATCAAAGAATCTAAGCAATCAACTTGGCATTTCAA
GAATGAATGAAAGAATAGTCTCTGTTTCCTGCCTCATGAACAGCC
Right flanking sequence: Indices 1170312 -- 1170811
GATAGCGAGGGGTGAGAAACAAACCACTCGACCAAAGGCCCGGTAGGGACTCACTATTCATATGG
TGAGGAAGAGGAGACTTGCCTTCCTTTATTCTTTCTCTTGCCAACCGTGTTCCCACCTTTCTTCC
ACTCTTATTCCTACTCTTATGCTCTATCAAGGGGCTTGCCTTGCTTATCGGGTTACTGGCTGGTC
CTACCTAGCTTATCGGGTTATCGGTTGGTCCTACCTTCCCATCGGGTGAAAGGCCTTAGTTATTG
CCTTCCTCTATCTATTGCTTGCTGACTATCTCTTTGGCTTGCCTGACTCGATTACTTGCCTGACT
ATCTCTTTGGTGCTTAGCGGTCGGTGCTAGTGAGCGCTGTAATCTAGTCATCGACCTAGTCCATA
GATGAGCTGGACCTAACGCTTTCAAAGAATTGACTTACTGGACTTAACCCTTCTGGCCCTAACGC
AGGGTGTCATTACGCATTGATGCTAATACATAAGCATTTCCCAGA
Found at i:1170520 original size:30 final size:30
Alignment explanation
Indices: 1170484--1170542 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
1170474 GGCTTGCCTT
1170484 GCTTATCGGGTTA-CTGGCTGGTCCTACCTA
1 GCTTATCGGGTTATC-GGCTGGTCCTACCTA
*
1170514 GCTTATCGGGTTATCGGTTGGTCCTACCT
1 GCTTATCGGGTTATCGGCTGGTCCTACCT
1170543 TCCCATCGGG
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
30 26 0.96
31 1 0.04
ACGTcount: A:0.12, C:0.25, G:0.27, T:0.36
Consensus pattern (30 bp):
GCTTATCGGGTTATCGGCTGGTCCTACCTA
Left flanking sequence: Indices 1169984 -- 1170483
CCTTCCCTCTCGCTAATCGTACCGGCCCTTCTATACGAATGAAGAGAACCAGCCTTCCTTCTATC
CTTCCTTCTATACAAACGAAGAGAACCAGCCTTCCTTCGGGATCAAAGAACTCACTGGCAAGAGA
CAGAATGAATAGAGAATAAGCTTCCCTCTCACGCTCTTCCTCGACCACACTTAGCCAGACTTCCT
CGACCACTCGTGAGACTTCCTTCCCGGGATCAAAGAATCTAAGCAATCAACTTGGCATTTCAAGA
ATGAATGAAAGAATAGTCTCTGTTTCCTGCCTCATGAACAGCCGCCATCGAGAGTTGCCATCGAG
AGTGATAGCGAGGGGTGAGAAACAAACCACTCGACCAAAGGCCCGGTAGGGACTCACTATTCATA
TGGTGAGGAAGAGGAGACTTGCCTTCCTTTATTCTTTCTCTTGCCAACCGTGTTCCCACCTTTCT
TCCACTCTTATTCCTACTCTTATGCTCTATCAAGGGGCTTGCCTT
Right flanking sequence: Indices 1170543 -- 1171042
TCCCATCGGGTGAAAGGCCTTAGTTATTGCCTTCCTCTATCTATTGCTTGCTGACTATCTCTTTG
GCTTGCCTGACTCGATTACTTGCCTGACTATCTCTTTGGTGCTTAGCGGTCGGTGCTAGTGAGCG
CTGTAATCTAGTCATCGACCTAGTCCATAGATGAGCTGGACCTAACGCTTTCAAAGAATTGACTT
ACTGGACTTAACCCTTCTGGCCCTAACGCAGGGTGTCATTACGCATTGATGCTAATACATAAGCA
TTTCCCAGAGAAAGAAAAGCATTCTCCCGAAGTTTTTGGGTAACCCACCCTATCAATCTATGACC
TCTTCTATCAATCTATAACCTCTTATATCAATCTGCCTGCCTTTTGATAGCTTTAGTTTTAGCAT
TCGCATCTGAGCATTCGCATTCGTGGGCATTAACAACCCTTTCAAAGAATTGACTTAACGTACCT
GCCTAGCCTGCCTAACCCAGATGAGCTTTTGCAGATGATCTTTTA
Found at i:1170877 original size:20 final size:20
Alignment explanation
Indices: 1170852--1170901 Score: 82
Period size: 20 Copynumber: 2.5 Consensus size: 20
1170842 GTAACCCACC
*
1170852 CTATCAATCTATGACCTCTT
1 CTATCAATCTATAACCTCTT
1170872 CTATCAATCTATAACCTCTT
1 CTATCAATCTATAACCTCTT
*
1170892 ATATCAATCT
1 CTATCAATCT
1170902 GCCTGCCTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.30, C:0.28, G:0.02, T:0.40
Consensus pattern (20 bp):
CTATCAATCTATAACCTCTT
Left flanking sequence: Indices 1170352 -- 1170851
CGGTAGGGACTCACTATTCATATGGTGAGGAAGAGGAGACTTGCCTTCCTTTATTCTTTCTCTTG
CCAACCGTGTTCCCACCTTTCTTCCACTCTTATTCCTACTCTTATGCTCTATCAAGGGGCTTGCC
TTGCTTATCGGGTTACTGGCTGGTCCTACCTAGCTTATCGGGTTATCGGTTGGTCCTACCTTCCC
ATCGGGTGAAAGGCCTTAGTTATTGCCTTCCTCTATCTATTGCTTGCTGACTATCTCTTTGGCTT
GCCTGACTCGATTACTTGCCTGACTATCTCTTTGGTGCTTAGCGGTCGGTGCTAGTGAGCGCTGT
AATCTAGTCATCGACCTAGTCCATAGATGAGCTGGACCTAACGCTTTCAAAGAATTGACTTACTG
GACTTAACCCTTCTGGCCCTAACGCAGGGTGTCATTACGCATTGATGCTAATACATAAGCATTTC
CCAGAGAAAGAAAAGCATTCTCCCGAAGTTTTTGGGTAACCCACC
Right flanking sequence: Indices 1170902 -- 1171401
GCCTGCCTTTTGATAGCTTTAGTTTTAGCATTCGCATCTGAGCATTCGCATTCGTGGGCATTAAC
AACCCTTTCAAAGAATTGACTTAACGTACCTGCCTAGCCTGCCTAACCCAGATGAGCTTTTGCAG
ATGATCTTTTATGCATAAAATAGCCTAAAGATGAGCTAACCCAACGTAATCGCCCACTGGTTGTC
CTTCCCCACTGGTTCTACAGGCAAGCGCCTACATGAAGTCATAACATGAAGTCATAAGGCAAACA
TGAAGTAATAACATGAAGTCGGCAAGCCCCTCTATAGGCACTCTCTATAGGCACATACTATAGGC
ACAAGTGAATAAATAGAAGTGTTCGAGGGTGAGAAGTGTGCGAGGCATTAGTGTGGGTTAGTGTC
CCAGGGTGAGAAGTGTCCGAAGCGCTTAAGCCCCTCGGAGAGTACCTGAAGAATGTAAGTCAAAC
CCTTGTTTTTCTCCCATGACCGCAACTATTCCTAATGTAGTAAAA
Found at i:1171145 original size:13 final size:13
Alignment explanation
Indices: 1171127--1171153 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
1171117 GCAAGCGCCT
1171127 ACATGAAGTCATA
1 ACATGAAGTCATA
1171140 ACATGAAGTCATA
1 ACATGAAGTCATA
1171153 A
1 A
1171154 GGCAAACATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.48, C:0.15, G:0.15, T:0.22
Consensus pattern (13 bp):
ACATGAAGTCATA
Left flanking sequence: Indices 1170627 -- 1171126
TTGCCTGACTATCTCTTTGGTGCTTAGCGGTCGGTGCTAGTGAGCGCTGTAATCTAGTCATCGAC
CTAGTCCATAGATGAGCTGGACCTAACGCTTTCAAAGAATTGACTTACTGGACTTAACCCTTCTG
GCCCTAACGCAGGGTGTCATTACGCATTGATGCTAATACATAAGCATTTCCCAGAGAAAGAAAAG
CATTCTCCCGAAGTTTTTGGGTAACCCACCCTATCAATCTATGACCTCTTCTATCAATCTATAAC
CTCTTATATCAATCTGCCTGCCTTTTGATAGCTTTAGTTTTAGCATTCGCATCTGAGCATTCGCA
TTCGTGGGCATTAACAACCCTTTCAAAGAATTGACTTAACGTACCTGCCTAGCCTGCCTAACCCA
GATGAGCTTTTGCAGATGATCTTTTATGCATAAAATAGCCTAAAGATGAGCTAACCCAACGTAAT
CGCCCACTGGTTGTCCTTCCCCACTGGTTCTACAGGCAAGCGCCT
Right flanking sequence: Indices 1171154 -- 1171653
GGCAAACATGAAGTAATAACATGAAGTCGGCAAGCCCCTCTATAGGCACTCTCTATAGGCACATA
CTATAGGCACAAGTGAATAAATAGAAGTGTTCGAGGGTGAGAAGTGTGCGAGGCATTAGTGTGGG
TTAGTGTCCCAGGGTGAGAAGTGTCCGAAGCGCTTAAGCCCCTCGGAGAGTACCTGAAGAATGTA
AGTCAAACCCTTGTTTTTCTCCCATGACCGCAACTATTCCTAATGTAGTAAAAGCTAATGATTCG
GGTCAATATCGTAACTAAAATAGGGAAGAACTCATTGGTGTTGTTGTTGTAGAGTCTATTGTATG
GGCTTGTCGTTCCTGACTGTGTAATGAATGCATGGATTGTCTATGTCTGATGGGTTATTGGCTGC
GGCTCATAAGGCTTTGAGGTTATAAAATGAAGCACTTATCTCCCCCATTTAGTCCTGTGGTGTCT
TTCCATAATGTGGTAGGTTGTTTGAGTAATTGACCGTAATAAGTC
Found at i:1171209 original size:13 final size:14
Alignment explanation
Indices: 1171191--1171229 Score: 55
Period size: 13 Copynumber: 2.9 Consensus size: 14
1171181 CGGCAAGCCC
1171191 CTCTATAGGCAC-T
1 CTCTATAGGCACAT
1171204 CTCTATAGGCACAT
1 CTCTATAGGCACAT
*
1171218 -ACTATAGGCACA
1 CTCTATAGGCACA
1171230 AGTGAATAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
13 23 0.96
14 1 0.04
ACGTcount: A:0.31, C:0.28, G:0.15, T:0.26
Consensus pattern (14 bp):
CTCTATAGGCACAT
Left flanking sequence: Indices 1170691 -- 1171190
CCTAGTCCATAGATGAGCTGGACCTAACGCTTTCAAAGAATTGACTTACTGGACTTAACCCTTCT
GGCCCTAACGCAGGGTGTCATTACGCATTGATGCTAATACATAAGCATTTCCCAGAGAAAGAAAA
GCATTCTCCCGAAGTTTTTGGGTAACCCACCCTATCAATCTATGACCTCTTCTATCAATCTATAA
CCTCTTATATCAATCTGCCTGCCTTTTGATAGCTTTAGTTTTAGCATTCGCATCTGAGCATTCGC
ATTCGTGGGCATTAACAACCCTTTCAAAGAATTGACTTAACGTACCTGCCTAGCCTGCCTAACCC
AGATGAGCTTTTGCAGATGATCTTTTATGCATAAAATAGCCTAAAGATGAGCTAACCCAACGTAA
TCGCCCACTGGTTGTCCTTCCCCACTGGTTCTACAGGCAAGCGCCTACATGAAGTCATAACATGA
AGTCATAAGGCAAACATGAAGTAATAACATGAAGTCGGCAAGCCC
Right flanking sequence: Indices 1171230 -- 1171729
AGTGAATAAATAGAAGTGTTCGAGGGTGAGAAGTGTGCGAGGCATTAGTGTGGGTTAGTGTCCCA
GGGTGAGAAGTGTCCGAAGCGCTTAAGCCCCTCGGAGAGTACCTGAAGAATGTAAGTCAAACCCT
TGTTTTTCTCCCATGACCGCAACTATTCCTAATGTAGTAAAAGCTAATGATTCGGGTCAATATCG
TAACTAAAATAGGGAAGAACTCATTGGTGTTGTTGTTGTAGAGTCTATTGTATGGGCTTGTCGTT
CCTGACTGTGTAATGAATGCATGGATTGTCTATGTCTGATGGGTTATTGGCTGCGGCTCATAAGG
CTTTGAGGTTATAAAATGAAGCACTTATCTCCCCCATTTAGTCCTGTGGTGTCTTTCCATAATGT
GGTAGGTTGTTTGAGTAATTGACCGTAATAAGTCCGTAAAAATCATCCCATCTTTTGTTGCCCCC
TCGCTAAGCTGTTCCTGTCGACGCTTTTGTGTGTGTAGAGGGAGT
Found at i:1172563 original size:69 final size:66
Alignment explanation
Indices: 1172458--1172588 Score: 208
Period size: 69 Copynumber: 1.9 Consensus size: 66
1172448 ATCTTCAACC
** *
1172458 CGGCTGCTCGCTCTTTGATCGGTGATTCACCGGCCACTTTCACATCCGTGGATCCCACCTTATTC
1 CGGCTGCTCGCTCTTTGATCGGTGATTCACAAGCCAC--T-ACATCCGGGGATCCCACCTTATTC
1172523 AAGG
63 AAGG
1172527 CGGCTGCTCGCTCTTTGATCGGTGATTCACAAGCCACTACATCCGGGGATCCCACCTTATTC
1 CGGCTGCTCGCTCTTTGATCGGTGATTCACAAGCCACTACATCCGGGGATCCCACCTTATTC
1172589 TCAAACCTGG
Statistics
Matches: 59, Mismatches: 3, Indels: 3
0.91 0.05 0.05
Matches are distributed among these distances:
66 23 0.39
67 1 0.02
69 35 0.59
ACGTcount: A:0.17, C:0.34, G:0.21, T:0.28
Consensus pattern (66 bp):
CGGCTGCTCGCTCTTTGATCGGTGATTCACAAGCCACTACATCCGGGGATCCCACCTTATTCAAG
G
Left flanking sequence: Indices 1171958 -- 1172457
TTATACCGCTTCGCACTATTTTGTCTCTTCTCTCTCACTCATTCCCTCCCCCGGTGCTCATTCAT
CTCGCTCATAAATAAAGTAAGTTATTGTTCGATCCGCAAAAAACTAACTAACTAACTGTTATGTA
GGAATCTATTTCACCACAATATTCGTTCTTTTGGGGTTAATGTTCTCAATGGTGGATTGGTCATT
CGCTATCCTTTTGGTTCTGAGAGGACGCCCTGGAGGGAGAGTTGTAAAACCTGCGATTGCTGCTG
GATAACCTCCTTTTACTTTATAAGTAATAGACCCTTTCACCCTCCTATTCGTTCGCCAAATCTTG
TTCGGTTCCATCCAAGCTCGGGTTTGTCTGAATATTCGCGGATAAAGAATCAGTGGTTCACCGGC
CACTACATCTGCGGATCCCGCCAAATCATTCAACCTGGCGGCTGCTCGCTCTTTGATCGGTGATT
CACAAGCCACTGGATCTATAGATAATCTCTCCGAAATCTTCAACC
Right flanking sequence: Indices 1172589 -- 1173088
TCAAACCTGGCGGCGTTGATTGGCACTCTTGTAAGCTCATCCTGCATACGAATTATTGGGGTCCC
AGGTCCTGCATCCACCGGGAACATTTTTTCCCTTGAGCGTAAAACTGGGGATTGCAAAGCGTTTC
CACATGATAGGGGAGAACTGGGATTAGATCTTGGAAATAATCGACTCAAATAGATACTCATCATA
AGCTAGCTTCTTTCTTGCTCCTTCCCCCCTCCCTATTGATTGATTGATCAGAAGAAGCATCTTCG
GGCAGCCAGCCATTGTATTTAGATAGGTAGGGAAAACCAATTGGTTGGATTTCTTTCCGAATGAA
TCGATCGAGAAAGCTCGAAAGAGCATGGGGGAGCTCAGGAGGGATCGGATGTTCTCAGTTTCAAG
TGCTCGCTGATTGAGATTCACGATGATGCTCCTCGAAATGAATGATTGGTATTCAAATGCATGGG
GGATGGATGAAAGAGCATGTTGCTGGCTGGCATAAGCAATAAATA
Found at i:1174376 original size:24 final size:24
Alignment explanation
Indices: 1174343--1174405 Score: 99
Period size: 24 Copynumber: 2.6 Consensus size: 24
1174333 TCTCCCTCTC
1174343 CCTTAAGGTCGAGCACCTAAAGGT
1 CCTTAAGGTCGAGCACCTAAAGGT
*
1174367 CCTTATGGTCGAGCACCTAAAGGT
1 CCTTAAGGTCGAGCACCTAAAGGT
*
1174391 CCTTAACAGTCGAGC
1 CCTTAA-GGTCGAGC
1174406 CCCTCCGGTC
Statistics
Matches: 35, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
24 28 0.80
25 7 0.20
ACGTcount: A:0.27, C:0.27, G:0.24, T:0.22
Consensus pattern (24 bp):
CCTTAAGGTCGAGCACCTAAAGGT
Left flanking sequence: Indices 1173843 -- 1174342
TATGGTGTTCTTCCAGTAGCATTGTCGATAACACTATGAGGCTACGTTTGCTTCAACACACTCTC
ACAGGAGCTGCTGCGAAGTGGTATATTGAACAACCCGCTAGGTCATTCCGTGACTTCCAGTTCCT
GGCGAAACATTTTGATCCTTCTTCCAGTTACCCGTCAGATATGACGAGGGGATCGAAATCTTAAT
GTCGTGCCGTCAAAATACTGCCACCCACATATCCGATCATATCCATTAGTGGCGTAGACGACGGA
GCCTGTGCAAGGCCAAGAGTGCAAATTCCTATCTTCTCGATTGGTTTCTGAAATCCCTCACTCAT
TCCGACCTTAGTTACTTATTTGAGAGGGGCCACCCAATAAGCATCAAGGAAGAAAAACCTCCGCC
TCCTCTCCTTATCAGTCGAGTCACTAACGTACCTCTCCCGCTGGTCGAGCGTGCTCCGCATCCTC
TCCTTAGATTGAGAGCAATTAAAGGCATCCTCTCCTCTCCCTCTC
Right flanking sequence: Indices 1174406 -- 1174905
CCCTCCGGTCCTCTCCTTATCAGTCGAGCCTGCTTAAGCATCCTGAAAATGCTATAATAGGAGGG
GAATCTTGAAAAACCTCCGCCAAGCTAAAATGGCCAAATTCTTAGGGTGATATTCAGTCATAGCA
GGGGTAAAGGCTTGAGCGTGTCAAGTAGCCGTAAAACGCACGCAAATGCCCTCTCCTTATCAGTC
GAGCCTGCTTACGCATCCTTTCAGACGAGATTCCACTCTCGATGCATGCCTCTGGAAAACTACCA
CATGCTCATATATAACTACCACCATAACAAGGAGCCGTAAGGCCGCTCGACCATTCTTTCTTCTC
TCTCTCTAGCTAGGAAATCACTCTCATTATATATGTCATTACGCTATCTCGCCGAGGTGCACATC
TGGTTCCTATCTCGAATGACGTAATAAGGTGCGAAGCAGCTTTCCCTCCGGGGCAAGGACCCATT
CTCTGGCTCGAAGAGACAGAGCCGTATTCATATTGAGTGACTAAA
Found at i:1178119 original size:15 final size:15
Alignment explanation
Indices: 1178099--1178130 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
1178089 CCACCCTCGA
*
1178099 ATCGTGGCTATACTT
1 ATCGTGGCCATACTT
1178114 ATCGTGGCCATACTT
1 ATCGTGGCCATACTT
1178129 AT
1 AT
1178131 ATCTAATCTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.22, C:0.22, G:0.19, T:0.38
Consensus pattern (15 bp):
ATCGTGGCCATACTT
Left flanking sequence: Indices 1177599 -- 1178098
AGTCTTTTCTTTTTGATGATACTACTTAAAACAAATAAGAAAGGCGGTTCTTTTCGAAGCTATTC
GACGCGGCGTTGTAGCATGGATGATAAAACACCAGCTATTTGGAGGGCCACGATTACGCCTATTG
TCTCGGACCCACAATGACTATTCTCGGTGAGTGGTGTTGTTAATACGTATATATTGACTGATAGT
ACGTACGACTGGCTCTCTTTCTTTACGATAGGACTTTGTTGTTGCTAATAGCATATAATAGACTC
GACCCTTTAGAGAAGAGGGAGATCGAGGGGCGAGTTGTAGAGCCGCTCTATTGACTAGCCAGCCA
CAATTAGGTGAGCGAGGTAGCTGCGCTTTGAAATAGGCGGTGCAAGACCAGACAGATATCGCACT
TATAAGATTTCCTAGGCAGTACTTATCGAATGCATCAGCCCTTCCAGCCTTAAGAGAGGGCTCGG
AACTAGGCACTTCAATTTTCCCGAAGATGATGTAACCACCCTCGA
Right flanking sequence: Indices 1178131 -- 1178630
ATCTAATCTTATATCTAATCCGTTCTAATCCGTATTGTAATGTGTTTCCGGAACTCATATTTCCT
TATTCCTTCCTGCCTGCGGCTGATAAGGTAGCGAGGAGGAACCCGTCATTGTCGAGATTATTCCT
GCGATATGAACTAGCCAGCCTAGCCAGTGATTGGTCTAGCCAGCCACATCCTAGCCAGTGACTGA
AGGCGAGTGACTGATCTCCTAGCCAGCGAAATATCTGACCCTGATGGCTGTAAGTAGGTGAGTAG
CAATAGTAGGCGGGGTATGGAGAGAATAGGGAAGTAGGTGGCTCCTCCTAACGAGTCAAAAGAAT
CTAGTCTGAAAGGGATTGATGTAATTAGGTGTACTGCGGCTGCTGCTTGTTCTCTTCCTCGATCT
AGGAACCCGCCCCCCCCCCGCTTATCTTGATGAATTCGACCTTGCTTGACCTTTCTCTTCTTGAT
ATCTGGGTGACCCAATGAGATCCGATGGGCATAGGCGTGCGTTTT
Found at i:1178143 original size:12 final size:12
Alignment explanation
Indices: 1178126--1178150 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
1178116 CGTGGCCATA
1178126 CTTATATCTAAT
1 CTTATATCTAAT
1178138 CTTATATCTAAT
1 CTTATATCTAAT
1178150 C
1 C
1178151 CGTTCTAATC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.20, G:0.00, T:0.48
Consensus pattern (12 bp):
CTTATATCTAAT
Left flanking sequence: Indices 1177626 -- 1178125
AAAACAAATAAGAAAGGCGGTTCTTTTCGAAGCTATTCGACGCGGCGTTGTAGCATGGATGATAA
AACACCAGCTATTTGGAGGGCCACGATTACGCCTATTGTCTCGGACCCACAATGACTATTCTCGG
TGAGTGGTGTTGTTAATACGTATATATTGACTGATAGTACGTACGACTGGCTCTCTTTCTTTACG
ATAGGACTTTGTTGTTGCTAATAGCATATAATAGACTCGACCCTTTAGAGAAGAGGGAGATCGAG
GGGCGAGTTGTAGAGCCGCTCTATTGACTAGCCAGCCACAATTAGGTGAGCGAGGTAGCTGCGCT
TTGAAATAGGCGGTGCAAGACCAGACAGATATCGCACTTATAAGATTTCCTAGGCAGTACTTATC
GAATGCATCAGCCCTTCCAGCCTTAAGAGAGGGCTCGGAACTAGGCACTTCAATTTTCCCGAAGA
TGATGTAACCACCCTCGAATCGTGGCTATACTTATCGTGGCCATA
Right flanking sequence: Indices 1178151 -- 1178650
CGTTCTAATCCGTATTGTAATGTGTTTCCGGAACTCATATTTCCTTATTCCTTCCTGCCTGCGGC
TGATAAGGTAGCGAGGAGGAACCCGTCATTGTCGAGATTATTCCTGCGATATGAACTAGCCAGCC
TAGCCAGTGATTGGTCTAGCCAGCCACATCCTAGCCAGTGACTGAAGGCGAGTGACTGATCTCCT
AGCCAGCGAAATATCTGACCCTGATGGCTGTAAGTAGGTGAGTAGCAATAGTAGGCGGGGTATGG
AGAGAATAGGGAAGTAGGTGGCTCCTCCTAACGAGTCAAAAGAATCTAGTCTGAAAGGGATTGAT
GTAATTAGGTGTACTGCGGCTGCTGCTTGTTCTCTTCCTCGATCTAGGAACCCGCCCCCCCCCCG
CTTATCTTGATGAATTCGACCTTGCTTGACCTTTCTCTTCTTGATATCTGGGTGACCCAATGAGA
TCCGATGGGCATAGGCGTGCGTTTTCTACCGGTGCTGGGAGTTCT
Found at i:1180007 original size:5 final size:5
Alignment explanation
Indices: 1179997--1180022 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
1179987 GAGTTGTTCG
1179997 TCTCC TCTCC TCTCC TCTCC TCTCC T
1 TCTCC TCTCC TCTCC TCTCC TCTCC T
1180023 TAACAGTCGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.00, C:0.58, G:0.00, T:0.42
Consensus pattern (5 bp):
TCTCC
Left flanking sequence: Indices 1179497 -- 1179996
TGTACAAAGTTCATGGATCTGAAACTCCTGTCCGCAATAACTTGTTGCTCTACGTGATCCTGCTC
CGTCGTTTTTCCCAAGTGCTTGGGTTTTCTCATCATATTAGAGGTGTTTATTCAAAACTATAGCT
CTATGCTCTTCGTAGCGCTCCCACTCACTCATCAGTCGCTTCTTCTTTCCTCGTTCCTTCTCTTT
TCATTCCTAATCACTCTTCTTACTTATATTTCTTCCCTTCAAATTGCTAGAAGGTCCCCTAATTA
TTTGGTGGGGGGCCGGTCGAGAGTTCGCTTACTCACGATGGCGGCCCCACCAAAATGGTCGAGCA
ACTCAAGTTCCTCTCCTTAACAGTCGAGCGATGGCGGCCTTTTAGTTCTTCTCGTTTCAATTTAC
TTATTGCCCCACCCAATAAGTCAACCCTACCAGTCGAGCCCCTGACGGACCTCCCTTTTGGGGCG
TATGGGGTGCTTATTTGGTGAGGGGCCCCAAAAGAGAGTTGTTCG
Right flanking sequence: Indices 1180023 -- 1180522
TAACAGTCGAGCACCTAAAGGTCCTCTCCTCTTGGGTTTACTTATTGCCCCACCCAATAAGTCAA
CCTGGGGTCGAGCACCTAAAGGTCCTTATCAGTCGAGCCCCCTAAAGGGCCCTATATTCTTTAGG
GGTCACTCACTATTCATATGGTGAGGGTCCTTATCAGTCGAGCCTGCTTACGCATCCTTATCAGT
CGAGCACCTAAAGGTCCTTAACAGTCGAGCCTGCTTGCGCATCCTTATCAGTCGAGCCCCTGACG
GACCTCACACGTTACCTCTCCCATAGGTCGAGAGTTCGACAGGCTCACCCTCACCCTGCCGGACC
TATATTTTTGACCCTCAATTCAAAATGATAAAGGTAAGGACCTTACTGGGCAGGACCTTACAGGG
TTTACCTTTCATATCTTCCCGAACCTAATTTGAACCCGGGTTGGGATAACCTACACAAATTCCCG
CCTCTCAGTTAGGCAATAATCTATTTGAAGGATCAGATCCTCTAT
Found at i:1180218 original size:27 final size:27
Alignment explanation
Indices: 1180180--1180275 Score: 117
Period size: 27 Copynumber: 3.6 Consensus size: 27
1180170 ATGGTGAGGG
1180180 TCCTTATCAGTCGAGCCTGCTTACGCA
1 TCCTTATCAGTCGAGCCTGCTTACGCA
* * *
1180207 TCCTTATCAGTCGAGCAC--CTAAAG-G
1 TCCTTATCAGTCGAGC-CTGCTTACGCA
* *
1180232 TCCTTAACAGTCGAGCCTGCTTGCGCA
1 TCCTTATCAGTCGAGCCTGCTTACGCA
1180259 TCCTTATCAGTCGAGCC
1 TCCTTATCAGTCGAGCC
1180276 CCTGACGGAC
Statistics
Matches: 56, Mismatches: 9, Indels: 8
0.77 0.12 0.11
Matches are distributed among these distances:
24 1 0.02
25 15 0.27
26 7 0.12
27 32 0.57
28 1 0.02
ACGTcount: A:0.21, C:0.32, G:0.20, T:0.27
Consensus pattern (27 bp):
TCCTTATCAGTCGAGCCTGCTTACGCA
Left flanking sequence: Indices 1179680 -- 1180179
TTCCTTCTCTTTTCATTCCTAATCACTCTTCTTACTTATATTTCTTCCCTTCAAATTGCTAGAAG
GTCCCCTAATTATTTGGTGGGGGGCCGGTCGAGAGTTCGCTTACTCACGATGGCGGCCCCACCAA
AATGGTCGAGCAACTCAAGTTCCTCTCCTTAACAGTCGAGCGATGGCGGCCTTTTAGTTCTTCTC
GTTTCAATTTACTTATTGCCCCACCCAATAAGTCAACCCTACCAGTCGAGCCCCTGACGGACCTC
CCTTTTGGGGCGTATGGGGTGCTTATTTGGTGAGGGGCCCCAAAAGAGAGTTGTTCGTCTCCTCT
CCTCTCCTCTCCTCTCCTTAACAGTCGAGCACCTAAAGGTCCTCTCCTCTTGGGTTTACTTATTG
CCCCACCCAATAAGTCAACCTGGGGTCGAGCACCTAAAGGTCCTTATCAGTCGAGCCCCCTAAAG
GGCCCTATATTCTTTAGGGGTCACTCACTATTCATATGGTGAGGG
Right flanking sequence: Indices 1180276 -- 1180775
CCTGACGGACCTCACACGTTACCTCTCCCATAGGTCGAGAGTTCGACAGGCTCACCCTCACCCTG
CCGGACCTATATTTTTGACCCTCAATTCAAAATGATAAAGGTAAGGACCTTACTGGGCAGGACCT
TACAGGGTTTACCTTTCATATCTTCCCGAACCTAATTTGAACCCGGGTTGGGATAACCTACACAA
ATTCCCGCCTCTCAGTTAGGCAATAATCTATTTGAAGGATCAGATCCTCTATCAAGGAGTCAGTC
CCCTTCCCCGCACCCTGAAGATCTGTTCCAGCATTATGGTCGCCTACCTACCTGGAAGTAGTGGT
CGTGGTGGTACAGCGGTGGCCGGCCTATTCACCCAAAAGAATTTCCCAAAGTCAGTCAGTCGATT
CGGGACTGGAGGAGTTAGGTGTTCCACTGGCTGCATTTGACTTTCCTCAACCACACCACCCTTCT
TGACCTTCATGTATTTAGATAGGTTTTCGAATGGCGAAAAATGGG
Found at i:1181362 original size:35 final size:35
Alignment explanation
Indices: 1181316--1181428 Score: 116
Period size: 35 Copynumber: 3.5 Consensus size: 35
1181306 CCTTTAGGGG
1181316 GCTCGACTGATAAGGAGAGGAGAGGAACTTGAGTT
1 GCTCGACTGATAAGGAGAGGAGAGGAACTTGAGTT
******
1181351 GCTCGACTGATAAGGACCCTTTAGG-----G-G--
1 GCTCGACTGATAAGGAGAGGAGAGGAACTTGAGTT
1181378 GCTCGACTGATAAGGAGAGGAGAGGAACTTGAGTT
1 GCTCGACTGATAAGGAGAGGAGAGGAACTTGAGTT
1181413 GCTCGACTGATAAGGA
1 GCTCGACTGATAAGGA
1181429 CCTTTAGGTG
Statistics
Matches: 58, Mismatches: 12, Indels: 16
0.67 0.14 0.19
Matches are distributed among these distances:
27 19 0.33
29 1 0.02
30 1 0.02
32 1 0.02
33 1 0.02
35 35 0.60
ACGTcount: A:0.29, C:0.15, G:0.35, T:0.20
Consensus pattern (35 bp):
GCTCGACTGATAAGGAGAGGAGAGGAACTTGAGTT
Left flanking sequence: Indices 1180816 -- 1181315
AAGAGCACCAGTTCATATTCATAATTGCACACACAGATCTGGAGTAAAAGGATTCGAACCTTTGC
ATGTCGGTACCAAAAACCGATGCCTTACCACTTGGCTATACTCCATACGCCTGCCCAAAGGGGAA
AGGAAAAGCAGGGTGAGGTAGCGAACTCTCGACCACCGGGAGAGGGCTCGAAGAACGAGCGGATC
GGGGAATTACTTGACCGTACCGGGCGCGGGTGCTGGGGAATTATTTGACCGTTATCCCGCCTCCA
ACTACGATATATAGTGACAGAATTTTGCTTACTGACCTGCGATAGCGAAGGTTATCCCCTAATAT
TGATTCCCCTCAAAGCCTGAGCAGAGCTCACTCAGGACCAGGACCTTCCCTGAGCATAGCGAAGA
AGGTATTACCTTCGCATCCATCAGGTAAGGTCCCTTGCCTGCCCGAGCATAAGGTAAAGAAAAGC
ATAGCGAGGACCGGAGGGGCTCGACTGATAAGGACCCTTTAGGGG
Right flanking sequence: Indices 1181429 -- 1181928
CCTTTAGGTGCTCGACTGTTAAGGACCTTTAGGTGCTTAACAGTCGAGCCTGCTGTAGCATCCTT
ATGGTCGAGCGGCCTTACGGCTCCTTGTTATGGTGGTAGTTATATATGAGCATGTGGTAGTTTAG
GTTCAGTCAGTTCCTTAACAGTCGAGCATGCTTATGCATCCTCTCCTTATCAGTCGAGCCCCTAC
CGGTTAGGGTTTACTTATTGGGTGGGGGGGCGTTGGTCGAGAGTTCGGCAGGCTCACCCTCACCA
TATGAATAGTGAGCCCCCTAACGGGTCCTTGCTTCGGGCGTACAAGACTCGATAGCAAGCTTATA
AGCCAGCCTATTGGCGGTAGTTTTCCAGAGGCATGCATCGAGAGCCTCGTGGAATCTCGTCTGAA
AGGATGCGTAAGCAGGCTCGACTGATAAGGAGAGGGCATTTGCGTGCGTTTTACGGCTACTTGAC
ACGCCCAAGCGGGCTACCCTGCGTAGACCTAAGAATTGGTCATTC
Found at i:1181386 original size:62 final size:62
Alignment explanation
Indices: 1181289--1181453 Score: 298
Period size: 62 Copynumber: 2.7 Consensus size: 62
1181279 GACCGGAGGG
1181289 GCTCGACTGATAAGGACCCTTTAGGGGGCTCGACTGATAAGGAGAGGAGAGGAACTTGAGTT
1 GCTCGACTGATAAGGACCCTTTAGGGGGCTCGACTGATAAGGAGAGGAGAGGAACTTGAGTT
1181351 GCTCGACTGATAAGGACCCTTTAGGGGGCTCGACTGATAAGGAGAGGAGAGGAACTTGAGTT
1 GCTCGACTGATAAGGACCCTTTAGGGGGCTCGACTGATAAGGAGAGGAGAGGAACTTGAGTT
* *
1181413 GCTCGACTGATAAGGA-CCTTTA-GGTGCTCGACTGTTAAGGA
1 GCTCGACTGATAAGGACCCTTTAGGGGGCTCGACTGATAAGGA
1181454 CCTTTAGGTG
Statistics
Matches: 101, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
60 17 0.17
61 6 0.06
62 78 0.77
ACGTcount: A:0.27, C:0.17, G:0.34, T:0.22
Consensus pattern (62 bp):
GCTCGACTGATAAGGACCCTTTAGGGGGCTCGACTGATAAGGAGAGGAGAGGAACTTGAGTT
Left flanking sequence: Indices 1180789 -- 1181288
TCGTCAGTACAGATTTGGATGGAATTGAAGAGCACCAGTTCATATTCATAATTGCACACACAGAT
CTGGAGTAAAAGGATTCGAACCTTTGCATGTCGGTACCAAAAACCGATGCCTTACCACTTGGCTA
TACTCCATACGCCTGCCCAAAGGGGAAAGGAAAAGCAGGGTGAGGTAGCGAACTCTCGACCACCG
GGAGAGGGCTCGAAGAACGAGCGGATCGGGGAATTACTTGACCGTACCGGGCGCGGGTGCTGGGG
AATTATTTGACCGTTATCCCGCCTCCAACTACGATATATAGTGACAGAATTTTGCTTACTGACCT
GCGATAGCGAAGGTTATCCCCTAATATTGATTCCCCTCAAAGCCTGAGCAGAGCTCACTCAGGAC
CAGGACCTTCCCTGAGCATAGCGAAGAAGGTATTACCTTCGCATCCATCAGGTAAGGTCCCTTGC
CTGCCCGAGCATAAGGTAAAGAAAAGCATAGCGAGGACCGGAGGG
Right flanking sequence: Indices 1181454 -- 1181953
CCTTTAGGTGCTTAACAGTCGAGCCTGCTGTAGCATCCTTATGGTCGAGCGGCCTTACGGCTCCT
TGTTATGGTGGTAGTTATATATGAGCATGTGGTAGTTTAGGTTCAGTCAGTTCCTTAACAGTCGA
GCATGCTTATGCATCCTCTCCTTATCAGTCGAGCCCCTACCGGTTAGGGTTTACTTATTGGGTGG
GGGGGCGTTGGTCGAGAGTTCGGCAGGCTCACCCTCACCATATGAATAGTGAGCCCCCTAACGGG
TCCTTGCTTCGGGCGTACAAGACTCGATAGCAAGCTTATAAGCCAGCCTATTGGCGGTAGTTTTC
CAGAGGCATGCATCGAGAGCCTCGTGGAATCTCGTCTGAAAGGATGCGTAAGCAGGCTCGACTGA
TAAGGAGAGGGCATTTGCGTGCGTTTTACGGCTACTTGACACGCCCAAGCGGGCTACCCTGCGTA
GACCTAAGAATTGGTCATTCTTTATACTGGATTTTCTTTCTTCCT
Found at i:1181440 original size:25 final size:25
Alignment explanation
Indices: 1181412--1181465 Score: 99
Period size: 25 Copynumber: 2.2 Consensus size: 25
1181402 GAACTTGAGT
1181412 TGCTCGACTGATAAGGACCTTTAGG
1 TGCTCGACTGATAAGGACCTTTAGG
*
1181437 TGCTCGACTGTTAAGGACCTTTAGG
1 TGCTCGACTGATAAGGACCTTTAGG
1181462 TGCT
1 TGCT
1181466 TAACAGTCGA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.20, C:0.20, G:0.28, T:0.31
Consensus pattern (25 bp):
TGCTCGACTGATAAGGACCTTTAGG
Left flanking sequence: Indices 1180912 -- 1181411
TTGGCTATACTCCATACGCCTGCCCAAAGGGGAAAGGAAAAGCAGGGTGAGGTAGCGAACTCTCG
ACCACCGGGAGAGGGCTCGAAGAACGAGCGGATCGGGGAATTACTTGACCGTACCGGGCGCGGGT
GCTGGGGAATTATTTGACCGTTATCCCGCCTCCAACTACGATATATAGTGACAGAATTTTGCTTA
CTGACCTGCGATAGCGAAGGTTATCCCCTAATATTGATTCCCCTCAAAGCCTGAGCAGAGCTCAC
TCAGGACCAGGACCTTCCCTGAGCATAGCGAAGAAGGTATTACCTTCGCATCCATCAGGTAAGGT
CCCTTGCCTGCCCGAGCATAAGGTAAAGAAAAGCATAGCGAGGACCGGAGGGGCTCGACTGATAA
GGACCCTTTAGGGGGCTCGACTGATAAGGAGAGGAGAGGAACTTGAGTTGCTCGACTGATAAGGA
CCCTTTAGGGGGCTCGACTGATAAGGAGAGGAGAGGAACTTGAGT
Right flanking sequence: Indices 1181466 -- 1181965
TAACAGTCGAGCCTGCTGTAGCATCCTTATGGTCGAGCGGCCTTACGGCTCCTTGTTATGGTGGT
AGTTATATATGAGCATGTGGTAGTTTAGGTTCAGTCAGTTCCTTAACAGTCGAGCATGCTTATGC
ATCCTCTCCTTATCAGTCGAGCCCCTACCGGTTAGGGTTTACTTATTGGGTGGGGGGGCGTTGGT
CGAGAGTTCGGCAGGCTCACCCTCACCATATGAATAGTGAGCCCCCTAACGGGTCCTTGCTTCGG
GCGTACAAGACTCGATAGCAAGCTTATAAGCCAGCCTATTGGCGGTAGTTTTCCAGAGGCATGCA
TCGAGAGCCTCGTGGAATCTCGTCTGAAAGGATGCGTAAGCAGGCTCGACTGATAAGGAGAGGGC
ATTTGCGTGCGTTTTACGGCTACTTGACACGCCCAAGCGGGCTACCCTGCGTAGACCTAAGAATT
GGTCATTCTTTATACTGGATTTTCTTTCTTCCTTTCTTAGCGCAT
Found at i:1182473 original size:32 final size:32
Alignment explanation
Indices: 1182436--1182547 Score: 224
Period size: 32 Copynumber: 3.5 Consensus size: 32
1182426 AGTATATATA
1182436 AAGGAAGGATGGCTTACCTGAAGTATGAAGGT
1 AAGGAAGGATGGCTTACCTGAAGTATGAAGGT
1182468 AAGGAAGGATGGCTTACCTGAAGTATGAAGGT
1 AAGGAAGGATGGCTTACCTGAAGTATGAAGGT
1182500 AAGGAAGGATGGCTTACCTGAAGTATGAAGGT
1 AAGGAAGGATGGCTTACCTGAAGTATGAAGGT
1182532 AAGGAAGGATGGCTTA
1 AAGGAAGGATGGCTTA
1182548 GGGGAATAAA
Statistics
Matches: 80, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 80 1.00
ACGTcount: A:0.35, C:0.09, G:0.35, T:0.21
Consensus pattern (32 bp):
AAGGAAGGATGGCTTACCTGAAGTATGAAGGT
Left flanking sequence: Indices 1181936 -- 1182435
TGGATTTTCTTTCTTCCTTTCTTAGCGCATCCTCCTTTCACATTCATTTGTTGCAATGCCTTCTT
TTGTGTTTTTCTCCCACCAAGCGAAGTGAACTCTCCCTCTATCAAAGGGAATCTTTATGAGAAAT
GGTAACTCCTCCAAAAGAGAAAAGATTGCTTCTCATATGATGTTGCATGAGTCACTGCACACAAG
CACCATTTCAAATGGATCAATAAGCAAGGCAAAAGCACATGAATACATGAATTGAAACATGAAAT
AAATCTAAAGGTGAAAGGCATCATGCAAAGATCATCATAACTGAAAAGAGCAGATAACAAAAAGA
TCATCTCGAAGAATCAATGAGGGACATCCTTCTGTACAAGAACATTTATGAGCCAATGAGAAGAA
TTTGAACGCGAAACTCATTCATGGGTGAGGGAGGGTGAGGTAATCTTTCGTCGATTTTGTGCTAA
GGTTCCTGGTTGCTCAGGCAAGGTAACTCCAGGCAAGTATATATA
Right flanking sequence: Indices 1182548 -- 1183047
GGGGAATAAATATAGGGTAGGGTCCTGGTCTTACGCATAGCTCAGTAAGATAAAGCTTTCAATAT
GCTACGCCTTGAATAGGAAAAACCCGAGGGGAGGGGGGCGGGGCCCCTTGCTCCGCTCGCCCACG
TTGCTCGTTCGTTATAGTATAGATGGTTTTACTTACATATATGTCTGAATGAAAACGAATGAGAG
ATAGAAGCAATAGCTCCGCTTTCTCTGCGGTCCTGTTTGTTGCAGGGCCCAGCTGATAACTACAG
AGTTTACCACCATCTGAAATGCACGAAACTTCGATTGGTGGGAGCCGGTTCATGAGGATCATCCC
TTTTCTTACGTGCAATTCCCCTCTTTCGGTAAGCATCCGGTATCTCAGCAGATAAACATTTCTCT
GAGCTCATCCTGTTGCTTATACGTCGTTTGAAAGCTGCTCCAAGGATCCAACGAATAGCTAAGGT
TTGTTGACGATCCCTGGCTACAATCTCAGGTACATTATGAGTGGT
Found at i:1184157 original size:12 final size:12
Alignment explanation
Indices: 1184140--1184176 Score: 65
Period size: 12 Copynumber: 3.1 Consensus size: 12
1184130 ACCAGTAATC
1184140 CTGTCTCCCAGT
1 CTGTCTCCCAGT
1184152 CTGTCTCCCAGT
1 CTGTCTCCCAGT
*
1184164 CTGTCTTCCAGT
1 CTGTCTCCCAGT
1184176 C
1 C
1184177 GTAGTGACCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.08, C:0.41, G:0.16, T:0.35
Consensus pattern (12 bp):
CTGTCTCCCAGT
Left flanking sequence: Indices 1183640 -- 1184139
TGAGTGCCTTTCAACCAACCATGTATACTTCTTTTTGAAAGGAAGTTGCCAGGAGCCCAGAGGTA
ATATTGGAAAATCCATCATAGCGAAATTCATTACCCAATCTAATACCAGAGGTACTCTCGGGGAA
ACATAATAGTTATATGGAGTTACCGAACACATACCAGCGGTGATGGCTCGGCTAATCCACAATAG
CAATATGGAGTTACCGATATAAGCCCGGAGGTGCTATTCGGTATTGAGTTTGAGGAGAAACCACT
CCATAAAGAAAGCCAAGGTCCCGGAGGGGCTTGCGCTTCTGAGGGCAAGGAAGAGCACAAAGCAA
AGAATAGAAGAAAGCCGATCTTGTCTCTGGATCGATCGGCCCAAGAAAGATATCCTACTATGCTT
TCCTTATGGCTAGAGGTATTGATTTCGGTAAAGCCCGGTAAAGCCTTCCTTCCTCGATTACATGA
GTTGGTTTAAGCCTTACTCTCTTACTTACTCTTTGACCAGTAATC
Right flanking sequence: Indices 1184177 -- 1184676
GTAGTGACCAGCTCCCGTAGTGACCCACCCAGTTGATAATGGATTCTGCGTGCATACTGAAACGG
AACGGAGAAACCTTCTTGTCATGAATGGCGCTGTCGCTAGCTTCGTTCGTTACCTATTTCTTTTA
TTCCCTAAATCCTTCCCTGATTACAGGCCCGGTAGGGACTCACTATTCATATGGTGAGGAAAGCG
CCCTCCGGGTCCTTGGCCTTGTAGATTGCGCGAACTAAGGTAGGCAGTCGTTTGCCTGTGGGTGA
GTTAGCGTGTTACGGCACTAAGACAGGTAGATCCTTCCTTGATGCTTATTGGGTGGCCCCTCTCA
AATAAGTAACTAAAGGGTGGTCGAGCCATGCTTACGCATCCTCGATGCATTTCATTTCAATTAGT
CGAGTACGCTTTCAAAATGCATATATTATATATGTAATTACGCTCTCTCGAATCCAAATGCATTC
ATTCGTTATATACGTAATTACGTCACCTCTCCTGTTGTCGAGAGT
Done.