Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_039746
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 1191054
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 2 characters in sequence are not A, C, G, or T
File 5 of 8
Found at i:641789 original size:23 final size:23
Alignment explanation
Indices: 641713--641797 Score: 66
Period size: 23 Copynumber: 3.7 Consensus size: 23
641703 AAAATAAGAC
* *
641713 AGAGCGTAGCGGGCAGTAATGAA
1 AGAGCATAACGGGCAGTAATGAA
* * * *
641736 AAAGCGTAATGGGCAG-AGGA-GAC
1 AGAGCATAACGGGCAGTA--ATGAA
* *
641759 AGAACATAGCGGGCAGTAATGAA
1 AGAGCATAACGGGCAGTAATGAA
641782 AGAGCATAACGGGCAG
1 AGAGCATAACGGGCAG
641798 AGGAGATTTA
Statistics
Matches: 46, Mismatches: 12, Indels: 8
0.70 0.18 0.12
Matches are distributed among these distances:
22 2 0.04
23 42 0.91
24 2 0.04
ACGTcount: A:0.39, C:0.14, G:0.36, T:0.11
Consensus pattern (23 bp):
AGAGCATAACGGGCAGTAATGAA
Left flanking sequence: Indices 641213 -- 641712
TGGATAGTCTTGCTTCTTTAAACCTACGACTTCCCCCTTTTAGGCTTCGCTCAAATAGACCCAAC
GATCCTGCCTGAGACTTGATACCTTGCCGCCTGCTGATCCCGCCTACTGCTTGACCGCATGCCTT
ATCGATATTACTGCCCGCCTGATATCGACCTTGCGACCTTCTTACTTTTCAACGGCGAGAAAGCA
ACGGCAACTTCCATTACTTCAGTTCCTTGGTCCTTTATGAAGTCAGGTTCATTAGCACTTAGTTT
TATTGATCGGTACTTTATGGTTGAGGATGACTGGATACATCGTTAAGGTGGTGAAACAGGCGAGA
CATGGAACGGAAATGCCATTTGAGGAAGGTTTTGCTAGGGATGGAATTCACCTCTGCTGATACTG
GTGCAGCGTTGGATGCTTGGGAATACTATGGGGGAACATTTCATAAATAGGCCTACGCATTAAGG
GAGCATAGCGGGCAGTTCAAAGAAAGCATAACGGGAAAATAAGAC
Right flanking sequence: Indices 641798 -- 642297
AGGAGATTTAGCGTAGCGGGCAGTTCAGAGAGAGCGTAACGGGCAGTTCAGATTGATCAGATTGG
GCAGAGGAAACAGAGCGTAGTGGGCAGACCAGGCAGAGAACGTAGCGGGCAGTAAAGATTTAGCG
TAGCGGGCAGCTTCGTAACGGGCAGCTTAGATACTGGCGGATCAGAGTATGAGGCAGAAGACCCA
GGGGGATGCAGAGGACCAGGCGTAGGCTCCAGCATCCGGGTTGGGCAGCAGAGACATCACACGGG
GTTCGGATCCAGCATTCGGGGCTAGCGAGCCAGCATACAGGCAACCGATACATCATCCTGGGCGA
GGGTTCATCATCCTGCAAATCACCTCCATCTTCTCACCGTTCCAGCAACCTTAAAATACATCATC
CTGGGCGAGGCTACGGGAAATGCTTCCTGGGGCTCCATCATCCCCGGATACCGCTCCCTCAGACA
TGGCGGCAGAATCCTAAACTAAGGCTACGCATCAAGCATCTAGCT
Found at i:641796 original size:46 final size:46
Alignment explanation
Indices: 641690--641803 Score: 147
Period size: 46 Copynumber: 2.5 Consensus size: 46
641680 CAGTTCAAAG
* * ** * *
641690 AAAGCATAACGGGAAAATAAGACAGAGCGTAGCGGGCAGTAATGAA
1 AAAGCATAACGGGCAGAGGAGACAGAACATAGCGGGCAGTAATGAA
* *
641736 AAAGCGTAATGGGCAGAGGAGACAGAACATAGCGGGCAGTAATGAA
1 AAAGCATAACGGGCAGAGGAGACAGAACATAGCGGGCAGTAATGAA
*
641782 AGAGCATAACGGGCAGAGGAGA
1 AAAGCATAACGGGCAGAGGAGA
641804 TTTAGCGTAG
Statistics
Matches: 57, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
46 57 1.00
ACGTcount: A:0.43, C:0.13, G:0.34, T:0.10
Consensus pattern (46 bp):
AAAGCATAACGGGCAGAGGAGACAGAACATAGCGGGCAGTAATGAA
Left flanking sequence: Indices 641190 -- 641689
TAGGGGAATGGACTCGATAGGATTGGATAGTCTTGCTTCTTTAAACCTACGACTTCCCCCTTTTA
GGCTTCGCTCAAATAGACCCAACGATCCTGCCTGAGACTTGATACCTTGCCGCCTGCTGATCCCG
CCTACTGCTTGACCGCATGCCTTATCGATATTACTGCCCGCCTGATATCGACCTTGCGACCTTCT
TACTTTTCAACGGCGAGAAAGCAACGGCAACTTCCATTACTTCAGTTCCTTGGTCCTTTATGAAG
TCAGGTTCATTAGCACTTAGTTTTATTGATCGGTACTTTATGGTTGAGGATGACTGGATACATCG
TTAAGGTGGTGAAACAGGCGAGACATGGAACGGAAATGCCATTTGAGGAAGGTTTTGCTAGGGAT
GGAATTCACCTCTGCTGATACTGGTGCAGCGTTGGATGCTTGGGAATACTATGGGGGAACATTTC
ATAAATAGGCCTACGCATTAAGGGAGCATAGCGGGCAGTTCAAAG
Right flanking sequence: Indices 641804 -- 642303
TTTAGCGTAGCGGGCAGTTCAGAGAGAGCGTAACGGGCAGTTCAGATTGATCAGATTGGGCAGAG
GAAACAGAGCGTAGTGGGCAGACCAGGCAGAGAACGTAGCGGGCAGTAAAGATTTAGCGTAGCGG
GCAGCTTCGTAACGGGCAGCTTAGATACTGGCGGATCAGAGTATGAGGCAGAAGACCCAGGGGGA
TGCAGAGGACCAGGCGTAGGCTCCAGCATCCGGGTTGGGCAGCAGAGACATCACACGGGGTTCGG
ATCCAGCATTCGGGGCTAGCGAGCCAGCATACAGGCAACCGATACATCATCCTGGGCGAGGGTTC
ATCATCCTGCAAATCACCTCCATCTTCTCACCGTTCCAGCAACCTTAAAATACATCATCCTGGGC
GAGGCTACGGGAAATGCTTCCTGGGGCTCCATCATCCCCGGATACCGCTCCCTCAGACATGGCGG
CAGAATCCTAAACTAAGGCTACGCATCAAGCATCTAGCTCAGACC
Found at i:641815 original size:46 final size:46
Alignment explanation
Indices: 641709--641843 Score: 164
Period size: 46 Copynumber: 2.9 Consensus size: 46
641699 CGGGAAAATA
* *
641709 AGACAGAGCGTAGCGGGCAGTAATGAAAAAGCGTAATGGGCAGAGG
1 AGACAGAGCGTAGCGGGCAGTAATGAAAGAGCGTAACGGGCAGAGG
* * *
641755 AGACAGAACATAGCGGGCAGTAATGAAAGAGCATAACGGGCAGAGG
1 AGACAGAGCGTAGCGGGCAGTAATGAAAGAGCGTAACGGGCAGAGG
*** * *
641801 AGATTTAGCGTAGCGGGCAGTTCA-GAGAGAGCGTAACGGGCAG
1 AGACAGAGCGTAGCGGGCAG-TAATGAAAGAGCGTAACGGGCAG
641844 TTCAGATTGA
Statistics
Matches: 75, Mismatches: 13, Indels: 2
0.83 0.14 0.02
Matches are distributed among these distances:
46 73 0.97
47 2 0.03
ACGTcount: A:0.36, C:0.15, G:0.38, T:0.12
Consensus pattern (46 bp):
AGACAGAGCGTAGCGGGCAGTAATGAAAGAGCGTAACGGGCAGAGG
Left flanking sequence: Indices 641209 -- 641708
GGATTGGATAGTCTTGCTTCTTTAAACCTACGACTTCCCCCTTTTAGGCTTCGCTCAAATAGACC
CAACGATCCTGCCTGAGACTTGATACCTTGCCGCCTGCTGATCCCGCCTACTGCTTGACCGCATG
CCTTATCGATATTACTGCCCGCCTGATATCGACCTTGCGACCTTCTTACTTTTCAACGGCGAGAA
AGCAACGGCAACTTCCATTACTTCAGTTCCTTGGTCCTTTATGAAGTCAGGTTCATTAGCACTTA
GTTTTATTGATCGGTACTTTATGGTTGAGGATGACTGGATACATCGTTAAGGTGGTGAAACAGGC
GAGACATGGAACGGAAATGCCATTTGAGGAAGGTTTTGCTAGGGATGGAATTCACCTCTGCTGAT
ACTGGTGCAGCGTTGGATGCTTGGGAATACTATGGGGGAACATTTCATAAATAGGCCTACGCATT
AAGGGAGCATAGCGGGCAGTTCAAAGAAAGCATAACGGGAAAATA
Right flanking sequence: Indices 641844 -- 642343
TTCAGATTGATCAGATTGGGCAGAGGAAACAGAGCGTAGTGGGCAGACCAGGCAGAGAACGTAGC
GGGCAGTAAAGATTTAGCGTAGCGGGCAGCTTCGTAACGGGCAGCTTAGATACTGGCGGATCAGA
GTATGAGGCAGAAGACCCAGGGGGATGCAGAGGACCAGGCGTAGGCTCCAGCATCCGGGTTGGGC
AGCAGAGACATCACACGGGGTTCGGATCCAGCATTCGGGGCTAGCGAGCCAGCATACAGGCAACC
GATACATCATCCTGGGCGAGGGTTCATCATCCTGCAAATCACCTCCATCTTCTCACCGTTCCAGC
AACCTTAAAATACATCATCCTGGGCGAGGCTACGGGAAATGCTTCCTGGGGCTCCATCATCCCCG
GATACCGCTCCCTCAGACATGGCGGCAGAATCCTAAACTAAGGCTACGCATCAAGCATCTAGCTC
AGACCTAGCCTCCTGATTCTACGACTTTTCCCATTTCCCTTTCTA
Found at i:641949 original size:15 final size:15
Alignment explanation
Indices: 641926--641955 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
641916 AAAGATTTAG
*
641926 CGTAGCGGGCAGCTT
1 CGTAACGGGCAGCTT
641941 CGTAACGGGCAGCTT
1 CGTAACGGGCAGCTT
641956 AGATACTGGC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.17, C:0.27, G:0.37, T:0.20
Consensus pattern (15 bp):
CGTAACGGGCAGCTT
Left flanking sequence: Indices 641426 -- 641925
TCAGTTCCTTGGTCCTTTATGAAGTCAGGTTCATTAGCACTTAGTTTTATTGATCGGTACTTTAT
GGTTGAGGATGACTGGATACATCGTTAAGGTGGTGAAACAGGCGAGACATGGAACGGAAATGCCA
TTTGAGGAAGGTTTTGCTAGGGATGGAATTCACCTCTGCTGATACTGGTGCAGCGTTGGATGCTT
GGGAATACTATGGGGGAACATTTCATAAATAGGCCTACGCATTAAGGGAGCATAGCGGGCAGTTC
AAAGAAAGCATAACGGGAAAATAAGACAGAGCGTAGCGGGCAGTAATGAAAAAGCGTAATGGGCA
GAGGAGACAGAACATAGCGGGCAGTAATGAAAGAGCATAACGGGCAGAGGAGATTTAGCGTAGCG
GGCAGTTCAGAGAGAGCGTAACGGGCAGTTCAGATTGATCAGATTGGGCAGAGGAAACAGAGCGT
AGTGGGCAGACCAGGCAGAGAACGTAGCGGGCAGTAAAGATTTAG
Right flanking sequence: Indices 641956 -- 642455
AGATACTGGCGGATCAGAGTATGAGGCAGAAGACCCAGGGGGATGCAGAGGACCAGGCGTAGGCT
CCAGCATCCGGGTTGGGCAGCAGAGACATCACACGGGGTTCGGATCCAGCATTCGGGGCTAGCGA
GCCAGCATACAGGCAACCGATACATCATCCTGGGCGAGGGTTCATCATCCTGCAAATCACCTCCA
TCTTCTCACCGTTCCAGCAACCTTAAAATACATCATCCTGGGCGAGGCTACGGGAAATGCTTCCT
GGGGCTCCATCATCCCCGGATACCGCTCCCTCAGACATGGCGGCAGAATCCTAAACTAAGGCTAC
GCATCAAGCATCTAGCTCAGACCTAGCCTCCTGATTCTACGACTTTTCCCATTTCCCTTTCTATC
CATGTGTGATGAGCCCTGATTCTACTCTCTTTGAGACTTTTCCACCTCTAGCAGAGGAGAGGGAG
GTTCGCCCACTCATTTAGGCTGATTTGGGACACACCTTTCCCAGA
Found at i:644149 original size:15 final size:15
Alignment explanation
Indices: 644129--644158 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
644119 AGGCAGGTGT
644129 GGGCAGTGTTGGTTC
1 GGGCAGTGTTGGTTC
644144 GGGCAGTGTTGGTTC
1 GGGCAGTGTTGGTTC
644159 AACGGGTGAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.07, C:0.13, G:0.47, T:0.33
Consensus pattern (15 bp):
GGGCAGTGTTGGTTC
Left flanking sequence: Indices 643629 -- 644128
TAGTCACCCAGTCCACTTGAGTAGCTGAAGTATGAAACCAGTCCAGTATGAGGGTGCTGCTGCTA
GGTGCTACGAAAGAATCCCCTATAATAAGGGAGTATAAAGGTAATCATTCATGGATGGTTTCCTG
CATGCTGTTAAGGCAGGTCATTCTGTTTCTTCTCTTTGCCGGGATGCCTTCATTCCCAGGTGTTG
GCTGGCAGTGCTGGTTTTACAATAGAGGTATTGAGTAGAGATAGAGAGATCTGGAGAGATATAGA
TAGATATAGATTGGTATAGAATATCGAGTAGAGATGGAGGGTAGGAATAGAAGGTAAGGCTGAGA
GATGAGGATGTAGGTAAGGTAGAGAGTAGAGGAGGTAATTGAATGAGTGGGACTGAAAGCGTACG
TGAGTCCAGGCCTCTAGTGAAGGGACTCGGCTTGGTGAGAGTTAATGTATGTCGGTAGATAATTG
TTTGGTGAATCAATCTCGTTGCTGGTTTGATGGGAAGGCAGGTGT
Right flanking sequence: Indices 644159 -- 644658
AACGGGTGAGCTTTGATAGATGGGTGCAAGGGGTAGTAGGATGGCCGCTCATTAGGTAGATCGAG
GAGGAAGAGAGAATATATAAGTAGGTGGAGAGAGGGAAGGCAGCAGGCTACCGGATCAATCACCA
ATATGAAGGCAGGTGGGGAGATAGATCAATCACAGGCAGGCAGGTAGGCGGTAGGATCAATCACC
AATAAGGAGGAAGGTGGTAGCTATAATTACCCAATATGGAGGCAAGCGGTCTCTTTCTTTTTTGT
TCTTATTAGAAAATATTCTGGCAGGTGGTAAGGTTGATAGCAGCAGTTAGGTTGACTGGTTGTGA
AGATGACTAACTGGATTATAGACCAGGTTGAATAGTGACCCATGACCAGTAGGTAAATGAATTTG
GGAACAGGTGAAATAGAGTCCCGTGGGCAATTTGTGCCCTCTACATTAAGCCGTTATAGTCGTAC
GCGACAGTCTCCAAAGATAAGTAACTACAAGTCCTCCGGGTTCAC
Found at i:645479 original size:24 final size:24
Alignment explanation
Indices: 645452--645527 Score: 66
Period size: 24 Copynumber: 3.2 Consensus size: 24
645442 CGCTTCTTGG
*
645452 TCTCTGTGGCTTAACGCTCCCTGA
1 TCTCTGAGGCTTAACGCTCCCTGA
* * ** *
645476 TCTCT-ACGCTTAATGCTTTCTGG
1 TCTCTGAGGCTTAACGCTCCCTGA
*
645499 TCT-TCGCGGCTTAACGCTCCCTGA
1 TCTCT-GAGGCTTAACGCTCCCTGA
645523 TCTCT
1 TCTCT
645528 ATGCTCCTTG
Statistics
Matches: 37, Mismatches: 12, Indels: 5
0.69 0.22 0.09
Matches are distributed among these distances:
22 1 0.03
23 15 0.41
24 20 0.54
25 1 0.03
ACGTcount: A:0.12, C:0.33, G:0.18, T:0.37
Consensus pattern (24 bp):
TCTCTGAGGCTTAACGCTCCCTGA
Left flanking sequence: Indices 644952 -- 645451
TCTCACCCAATAACCACCTATTGGAGGTGCCATCCCAACAATACCTTCCTTCCTTAGGCTATTCA
CCCTCCTAGCCTAGGCCTTCAATCAGTGTCTCCCCTCCTAGTAGGACTTATAGCGGGCCCTCCCT
ATTAGAACCTAGTAGGTGCAATAAACCTTATTAAGTTTGGGCTATGAGCCCGAAAATTGATAAAG
TAGATTAGCCCTTCCCCTCCTATGTCGGGAAAGCGAGTCCCTTCCTTGCCCCCCGGAGGGAACAA
GCGGCTTCGCACCTTTGGAAAAGCTATCTTTTCCTTTTATCTTCTGGGTTAGCGCTCTATTCTAA
GGGGAGGTAGGCCTTTCTCTTTATATAGGGCTCTTATATAGAGGTTCTTTTCAGGGAGGTAGGTG
GTAAGCTTACCGAGAACCTTATTGCTCTTGATATTGACTGTATGCATTAAGGAAAGATAGCTATA
GAGCCATTTCATGCTTAGTTCTACTTGGTGTTGAACGCTTCTTGG
Right flanking sequence: Indices 645528 -- 646027
ATGCTCCTTGTCTTCACGCTTAATGCTGGCTGGTCTCTATGCTTACCACTTCATGCTTACCATTT
TCTATTACTTCATTGATAAGGCCTTTTAATTAAGGCTTTTCATTCATGTTTATTACATATATAAG
AGCCTAATGGAATGAGCATAGAAGATTGTTTAAGCAGGCATCAAAGATGGAACCATTATAACATA
AATAAGGATCTGAATTATAAGCTCCTCATTAGAGATGGTTTTCTATCTGGGCGGAGGGCTAATTC
CCCCTCCCTATGGGGATTCGGGGAAATTGATTTGCCCTTTCCCGCCGGAGCTCTAACTGGGCTAT
AAACCTGTCTCGCCAGAACTAACCGAGCCAATATAGGCCTAAGGGTCTTAATCCAAACCAGTAGA
TCCATCCCCTACCCATAAGGCCCCTATTCATAAGGCAAGTAATGGGGAGGTGAGTAATGGGGCAG
TTACCCTAATCAATGATGATATGCACGAAATTAACAAGTCTCCGT
Found at i:646440 original size:14 final size:14
Alignment explanation
Indices: 646421--646463 Score: 77
Period size: 14 Copynumber: 3.1 Consensus size: 14
646411 TTGTTTCGGG
*
646421 TTTGAAACCTATAC
1 TTTGAAGCCTATAC
646435 TTTGAAGCCTATAC
1 TTTGAAGCCTATAC
646449 TTTGAAGCCTATAC
1 TTTGAAGCCTATAC
646463 T
1 T
646464 ACCATGGGGA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
14 28 1.00
ACGTcount: A:0.30, C:0.21, G:0.12, T:0.37
Consensus pattern (14 bp):
TTTGAAGCCTATAC
Left flanking sequence: Indices 645921 -- 646420
ATCCCCTACCCATAAGGCCCCTATTCATAAGGCAAGTAATGGGGAGGTGAGTAATGGGGCAGTTA
CCCTAATCAATGATGATATGCACGAAATTAACAAGTCTCCGTAACACAAACTATTTTCGGAGCAA
TTTCCTTGCCCCCCGGAGGGAACAAGCGGCTTCGCACCTTCATAAAGAACTCCGTAAGCTTGGAG
CTATTTCTCTTTATCAAACCTCCGTAACTTCTCCGTAATTCTCCAAGTAGAATGGTAGAATGTTT
CAAATATAGTGATGAGGGGGTTCATGGATGAATGGTAAACCGCCTGAAAGGCCATTTTAGCGCGT
ATTAAAGCCACTTTATTATTTCTGTACCACGCCGTTATAATTGTTATTCTACGCGGTATATAAAG
GTTTTATTCTGATTTAATGCATTCTACATCTTCCGATTCTATGTGTCCTATAAGGTTAGCTGGTC
TATGTTCGCTTCTGAGTGAAGCCTATACCAATTCGTTGTTTCGGG
Right flanking sequence: Indices 646464 -- 646963
ACCATGGGGATCTCTTGAAGCCTATGCTATTATGTTGGAGATTTCATAGTATATTGCCTATACTG
TGTAGATTGCCTATACTACGGGACTTCTTGAAGCCTATACTATGTGATCTCTTTAAGCCTACTCA
TTGTGCAGGTATAAAGTGTGCACTATGGGGACTTATTTTAAGGGGACTTATTTTCCGATTGTGTA
TATAAAGCCTATACTATGGGGGGATTTATCCTATATCATGGGGACTTTATAGATCCATTCATTAT
TTGAGGTTTTAAAGCGTGTACTGTGAGATCTCCTAAACCATGGGACAATGCTCTGCCTTTTAGTT
GTTAGTAGAAGACTGTAAGCTGTTAGTAGGATAGGCGTGATAACCCTATTAAAGGTATGGTAAGT
AGGTGTACAGTAATTCTACTGGCTGGTAAAGAGGTATAGTCACTTTATAAAGATGACACAGTAGC
TTTATTTATTAATTATTTCTCTATCTATCTATCTATCTTCCTAGC
Found at i:647030 original size:14 final size:14
Alignment explanation
Indices: 647011--647042 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
647001 TTCAAGGCCC
647011 TTTCTGTGATGTCA
1 TTTCTGTGATGTCA
647025 TTTCTGTGATGTCA
1 TTTCTGTGATGTCA
647039 TTTC
1 TTTC
647043 AAGGCTTCGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.12, C:0.16, G:0.19, T:0.53
Consensus pattern (14 bp):
TTTCTGTGATGTCA
Left flanking sequence: Indices 646511 -- 647010
AGTATATTGCCTATACTGTGTAGATTGCCTATACTACGGGACTTCTTGAAGCCTATACTATGTGA
TCTCTTTAAGCCTACTCATTGTGCAGGTATAAAGTGTGCACTATGGGGACTTATTTTAAGGGGAC
TTATTTTCCGATTGTGTATATAAAGCCTATACTATGGGGGGATTTATCCTATATCATGGGGACTT
TATAGATCCATTCATTATTTGAGGTTTTAAAGCGTGTACTGTGAGATCTCCTAAACCATGGGACA
ATGCTCTGCCTTTTAGTTGTTAGTAGAAGACTGTAAGCTGTTAGTAGGATAGGCGTGATAACCCT
ATTAAAGGTATGGTAAGTAGGTGTACAGTAATTCTACTGGCTGGTAAAGAGGTATAGTCACTTTA
TAAAGATGACACAGTAGCTTTATTTATTAATTATTTCTCTATCTATCTATCTATCTTCCTAGCTA
TAGGGGGCTGAGTATATAATAGAAAAGGATGCCCTTTCAAGGCCC
Right flanking sequence: Indices 647043 -- 647542
AAGGCTTCGTTAAAGGATTCAAAGGTCCTTGCCTTTGGTTGAGCTAGGTCGTCGACGGGGGGCCT
CGGGTGAGCCATCCTTCCTTCTAGCTAATGAGAGGGTTTATCAGGACTGGGTTGACTAGTTACCG
CCTGCCTTTCAGGACCTTACCTGAGCGATCTCCTTGAGGGGAACATATATAGGAATAACCTTACT
AAATTGAACCAGTAGTATTTACTATATATTCGTCCGCGGAAAATGCAAGAAACAGCTCCGAAAGG
TACGTCATGTCATGTCCGGTTGTCACTTCATACGGATGATTAGAATCTCTATCACGAAACTCAAA
AACTTTCACTCTCTATATGTAAAAAAGTGGATATTTTATATAACCGATCTGCTGGAGTAAATGCG
ACTGGATATGGAACAGAGCGAAGGAAAGCTGAGGAGCCGTAGCTATATTCCACTCGTTGGGATTG
CCCTAGGAGTTGAGTAACCGTGTCTGCTGGTCCTGCTACGAGCGG
Found at i:652254 original size:14 final size:14
Alignment explanation
Indices: 652237--652283 Score: 58
Period size: 14 Copynumber: 3.4 Consensus size: 14
652227 GCAGAAGTTG
652237 AAAGGCTCCTGGCA
1 AAAGGCTCCTGGCA
**
652251 AAAGGCTCCTGGTG
1 AAAGGCTCCTGGCA
* *
652265 AAAGGCTTCTGGCT
1 AAAGGCTCCTGGCA
652279 AAAGG
1 AAAGG
652284 TAACAGGCTT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 28 1.00
ACGTcount: A:0.28, C:0.21, G:0.32, T:0.19
Consensus pattern (14 bp):
AAAGGCTCCTGGCA
Left flanking sequence: Indices 651737 -- 652236
GTAGAGCTTGAGCCTGTGGCCATTGACTAGGAGAGGGATTCTTTCTTCATCAATTGTTTTTATCT
TCACTGATCCATTGTAATAAAAGGTGTCTATTTGATATGGGCCTAACCATCTAGTCATTAGTTTC
CCTTTGAAATCCTTGTATCTAGAGTCATAGAGTAAGGCCCAATCTCCCTCTTGACAAACTTTCTA
CTTTATGAACCTATCATGCAAACCTTTTCTTTGCTGCTGTACAATCTCTGTATGAAAGAGTGCTT
GCTGTCTAAGCTCATCAAGCTCATTCAACTGCTGTATCCTTTCTTTACTCTCTCAATTTGAATCC
ACTTCCTTCTCCTTCTGTTGGACTTGGTTAGGCGGTGGACTTGGCTTATGGCCTCTGTCTGTTGG
ACTTGTTGTCCTTGTTGGACTTGGTGAGGCTGGAGGTTTAGGCTTCTGTTTCTGTCTGAAGTTGA
AAGGCTTCTGGTTACAGGTGAGTTTACAGGCTAAGGCAGAAGTTG
Right flanking sequence: Indices 652284 -- 652783
TAACAGGCTTATTCTGTTGGCCCTGTTTAGGCTTCTGGCCCTTGGTTACAGGCTTCAGTTTCCTG
GCTTCTGGCTCTCGATCATAAGGAACTAGACCAAGATCAACCACCTATGCTGCTGTTGGATCTAC
TCGTGCTGGTGGTGTTGGTGCTGGTACTGCTCAGGTAGGCAGAATATTTCCTCTATCCCTACGGC
AAGCTGGATGGTTGAAAGGTTACCATCCAATAGGGTTGAACTAGCTAGGGTAGGCTCCATGACCA
ACTATAGATAGTTTAGACCATCCTGAAGCCCCAGGCAATATCTATTTGTTGGGTGGGCTCCTACG
GGTTATCCTACTAGTCAAACCGGAAGGCAAGCTGGACCGAGGGTGAGTGTATTAGCTGGACTCCT
TAGCTGGACCATCGCTGCCGGAAGGTGTTAACTCAACCGGAAGGAAGGTCGGATGAAACAAAGCA
TTACCCTGCCTACACGGATTAGGCGCAATAGGATAGATGCTTTCT
Found at i:655963 original size:12 final size:12
Alignment explanation
Indices: 655946--655971 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
655936 CAAGTGACTG
655946 AAAGGAAGGATC
1 AAAGGAAGGATC
655958 AAAGGAAGGATC
1 AAAGGAAGGATC
655970 AA
1 AA
655972 GGATCAAAGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.54, C:0.08, G:0.31, T:0.08
Consensus pattern (12 bp):
AAAGGAAGGATC
Left flanking sequence: Indices 655446 -- 655945
TCTATTGTTTAGCCAGGCGCTTCGGACTCTTTTATATCTATGGGCTTAAAGACGGGTTAATTAAG
ACAGGTTCATATATGCGGCTTAATGAACGCTTCGATTTACTAGAGAGATGGAAGGCTTAGTTCGA
CCAGTGATTCCAGCGATTCCAGTCATGAATGAGAGAGATTCTAGCAGTCATTATGCATTCGGTAG
TTTCAAGCCAATTTGTAGCGAAACTACCGACAACCAATAGTAGGGTAGAAATCAAATGAATATGA
TTCGGTAGTTTATTAGCCAATTTGTAGCGAAAGATGAGTTGCTTTAGAATATGTTATTATTGAAC
TGATAGCTTTGTTACTGGTCCTAGGGATGCCTTGACGGAGAGGAAAGGTGGGATAGCTGGTGAGT
TAATCTATATATACGTGATTATTGCTCAGTCATTATGGAAAAGAAAGAGAAAGCTATGGAGCTTC
AAGTAATGGCAAGTAAAGGATGAAAGGAGGAAAGGCAAGTGACTG
Right flanking sequence: Indices 655972 -- 656471
GGATCAAAGGAGGTTGGATCAAACTATTCATTTCCTTGCCCTCAGAAGCGCAAGCCCTCCGGACC
TTGTGTTAATTGCAAACATCCTTATTCATCAAGTCACCAGGAGCACTTCTTCATTTATCTTCCAA
CCACCCCATCCAGCCAGCCCAAGAGCTAGCAAGCGAGTACTAGTCCTCCGCCAAGCTCCCGCAAG
AAAGCTCCCCCGCCCCTAAGATTGTTTGGAGAAGACTTTTTAGGGGTGCATTCAGTGACCCTTAC
TGCAAAGAGCGAGTAGCGGGTGACTTCAAGGAGGCGGTCAAGAGATAGAGGCTAGGTGAGGCAGT
GTTCTGGACAGAGAGAACCGGGGAGGGGGCTATTATGACTCTTACCCTTGGCGGTGCTAATCGAG
CCATCCCCTTAATCAATTCTTATATTCCCTTCAGTCACTGTGTCGGCACTAATCGAACCATTCCC
TTTGTGAGAGAGAATCCGCCCTTCAGTCACTGTGGTGGTGCTAAT
Found at i:656899 original size:20 final size:20
Alignment explanation
Indices: 656874--656915 Score: 75
Period size: 20 Copynumber: 2.1 Consensus size: 20
656864 CCTGCAGCAG
*
656874 AGGACCCCAAGGGCAGCTGA
1 AGGACCCCAAAGGCAGCTGA
656894 AGGACCCCAAAGGCAGCTGA
1 AGGACCCCAAAGGCAGCTGA
656914 AG
1 AG
656916 TACCACCAGC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.33, C:0.29, G:0.33, T:0.05
Consensus pattern (20 bp):
AGGACCCCAAAGGCAGCTGA
Left flanking sequence: Indices 656374 -- 656873
TCAATTCTTATATTCCCTTCAGTCACTGTGTCGGCACTAATCGAACCATTCCCTTTGTGAGAGAG
AATCCGCCCTTCAGTCACTGTGGTGGTGCTAATCCGGTCACTGTCTGTCTGTGGCTCATTCACGG
AAGAACTCATATCCCCGAGCACTGCAGAGAGCTTCGAGGGGATAAGGCTAGAGTGAGACGGGGCA
GTTATAGGCTTAGGCGGGTGCCGGGATAAACCGATTCTATGACCATTTTTTCGCACTGTAACGCC
ACTTGAAACCTCGGAAGGTAAGTCAAACGAATATTAAGCCTTCCTATCGACTGGACCAGACCAGT
GAGTGCTTCTGAACCAGAAACCAGTAGCAATCGAACCATCCAACAGAGCAGTTGTAAAGGGTTTA
TTTGAACAGCGAATCTCTCGGCAAATCGAATATCCGCCTCTTACGCTTCTGGGTCGACTGCTTTT
GATACTGACCTGCTCTCCGTGCGGGTAAGAACTCACCTGCAGCAG
Right flanking sequence: Indices 656916 -- 657415
TACCACCAGCGCAGCGTATGATCCTGTTGCCCTACTAGTTTCTCCAGGACCAGCGGCTCTAGGCC
AGCCAGCGTAGTCCTAGCCGGAAGTCACGAGGATGGAATCAAGCCTCAACCTGCCTGAAGGATGG
AACTCCCTTACAGCTTTCATCCCTCGGTTGGCCTAACTCACTAACCACCTTCTCTGGATGTCTTG
CCTGGTTCCACTATGGTGATTCGATCCATTAGGTCTGGTGATTCCAGCGAGTCCAGTCATGAATG
TTCCGATATGGGCATATGTCATTATGCTTTTCTGCCATTCATGAATGAGATATGTGTCAGACCAG
ATTCGATCGATAGAGAGTGAATGCTGCTATGGGCATATGTCATTATGCATTGTCGGCGGTCATTC
CAGATATGGGCATATGTCATTATGCCTTCTCTGCTAAAGCGTAATGACATATATAATGATTAAGC
CCACCACCCAATAAGCATCGAGGAAGGCAGGTGTGGGCAGTGTTG
Found at i:658149 original size:88 final size:88
Alignment explanation
Indices: 658034--658232 Score: 398
Period size: 88 Copynumber: 2.3 Consensus size: 88
658024 GGGGCGGAGC
658034 CACTCACTATTCATATGGTGAGGGTGCGTAAGCACACTCGACTGCCTTTGGTTACTTATTTGAGA
1 CACTCACTATTCATATGGTGAGGGTGCGTAAGCACACTCGACTGCCTTTGGTTACTTATTTGAGA
658099 GGAGGGGAGAGGGTGCGTTAGCA
66 GGAGGGGAGAGGGTGCGTTAGCA
658122 CACTCACTATTCATATGGTGAGGGTGCGTAAGCACACTCGACTGCCTTTGGTTACTTATTTGAGA
1 CACTCACTATTCATATGGTGAGGGTGCGTAAGCACACTCGACTGCCTTTGGTTACTTATTTGAGA
658187 GGAGGGGAGAGGGTGCGTTAGCA
66 GGAGGGGAGAGGGTGCGTTAGCA
658210 CACTCACTATTCATATGGTGAGG
1 CACTCACTATTCATATGGTGAGG
658233 ACCGGTAGGG
Statistics
Matches: 111, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
88 111 1.00
ACGTcount: A:0.23, C:0.19, G:0.31, T:0.28
Consensus pattern (88 bp):
CACTCACTATTCATATGGTGAGGGTGCGTAAGCACACTCGACTGCCTTTGGTTACTTATTTGAGA
GGAGGGGAGAGGGTGCGTTAGCA
Left flanking sequence: Indices 657534 -- 658033
CTTATTGGGTGGGGGGCTTATGGTCGAGCAACTAAAGTTGAAATTGACTTATTGGTGGGGGGGGT
TAGATTGAGAGCCCCGTTGCCGGTTAGGGTTTACTTATTGCCCCACCCAATAAGTAAACCCTAAC
AGTCGAGCCTGCTTGCGCATCCTTATCAGTCGAGCCTGCTTAAGCATCCTGAAAATGCTATAATA
GGAGGGTGAGCCTGCCGAACTCTCGACCACCGGGCCGCCATCGAAAGATGTTCAAACCTCCGCCA
TTGAAGTGCCGCCAAGGGTGAGGTAACGTGGCCCCTCTCAAATAAGTAACTAAGACGAGCAACTC
TCTGGGGGGGGGGGGGAGGGGCCCCAAAAGAGAGGTCCGTCAGGGTGCGTAAGCACACTCGACTG
CCCTTGCCCCCGGAGGGACAAGCGGCTTCGCACCTTAGTTACTTATTTGAGAGGGGGGCCGCCAT
CGCCCCTACTACTTTATAGGGCCCTATATTCTTTAGGGGCGGAGC
Right flanking sequence: Indices 658233 -- 658732
ACCGGTAGGGGCTCGACTGTCAAGGACCCTTTAGGGTGCGTAAGCACGCTCGACTAATAAGGACC
CTTTAGGGGGCTCGACTGATAAGGAGAGGAGAGGGGGCTCGACTGATAAGGAGAGGAGAGGGGTC
ACTCACTCATTCCGATGGGTGAGGGGCTCGACTGATAAGGAGAGGAACTTGAAGAACCACCGGGC
CGCCATCGCCCGCCTCTCCCACACCAGAGAAGCACATGTTTCTCTACTGCTGCTATAATATGCTA
TTGATTGTTGGGTTGGTTTCAGGGAGGGTGTATAGCTCAGTTGGTGGAGCATCGGGCTTTTAACC
TAATGGTCGCAGGTTCGAGTCCTGCTATACCCACGCCTGCTTGACTGATAGAGGTTATTAATACA
GTGACCCAAAGTGAGGTCCCGTTCGGAACCAGAACGGACAGTGAGAGGAAGGTGAACAAGGTCCG
AAAAGGACGGACTTTCTTTATCACGTAAGAAAAGGTGGGAATGGT
Found at i:658319 original size:27 final size:27
Alignment explanation
Indices: 658302--658360 Score: 82
Period size: 27 Copynumber: 2.2 Consensus size: 27
658292 AGGACCCTTT
* *
658302 AGGGGGCTCGACTGATAAGGAGAGGAG
1 AGGGGGCTCGACTGATAAGGACACGAG
* *
658329 AGGGGGCTCGACTGATAAGGAGAGGAG
1 AGGGGGCTCGACTGATAAGGACACGAG
658356 AGGGG
1 AGGGG
658361 TCACTCACTC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.29, C:0.10, G:0.51, T:0.10
Consensus pattern (27 bp):
AGGGGGCTCGACTGATAAGGACACGAG
Left flanking sequence: Indices 657802 -- 658301
CCGCCAAGGGTGAGGTAACGTGGCCCCTCTCAAATAAGTAACTAAGACGAGCAACTCTCTGGGGG
GGGGGGGGAGGGGCCCCAAAAGAGAGGTCCGTCAGGGTGCGTAAGCACACTCGACTGCCCTTGCC
CCCGGAGGGACAAGCGGCTTCGCACCTTAGTTACTTATTTGAGAGGGGGGCCGCCATCGCCCCTA
CTACTTTATAGGGCCCTATATTCTTTAGGGGCGGAGCCACTCACTATTCATATGGTGAGGGTGCG
TAAGCACACTCGACTGCCTTTGGTTACTTATTTGAGAGGAGGGGAGAGGGTGCGTTAGCACACTC
ACTATTCATATGGTGAGGGTGCGTAAGCACACTCGACTGCCTTTGGTTACTTATTTGAGAGGAGG
GGAGAGGGTGCGTTAGCACACTCACTATTCATATGGTGAGGACCGGTAGGGGCTCGACTGTCAAG
GACCCTTTAGGGTGCGTAAGCACGCTCGACTAATAAGGACCCTTT
Right flanking sequence: Indices 658361 -- 658860
TCACTCACTCATTCCGATGGGTGAGGGGCTCGACTGATAAGGAGAGGAACTTGAAGAACCACCGG
GCCGCCATCGCCCGCCTCTCCCACACCAGAGAAGCACATGTTTCTCTACTGCTGCTATAATATGC
TATTGATTGTTGGGTTGGTTTCAGGGAGGGTGTATAGCTCAGTTGGTGGAGCATCGGGCTTTTAA
CCTAATGGTCGCAGGTTCGAGTCCTGCTATACCCACGCCTGCTTGACTGATAGAGGTTATTAATA
CAGTGACCCAAAGTGAGGTCCCGTTCGGAACCAGAACGGACAGTGAGAGGAAGGTGAACAAGGTC
CGAAAAGGACGGACTTTCTTTATCACGTAAGAAAAGGTGGGAATGGTATCGGAATAAAAGGACCC
GCCATGAAGTGGCCAACCAAACCAATAGGTATCACCTTTACAACCTCTCCTACCCCGAATTCTTA
GGTAGTTCCTAACCCCGAATCCAATCCCGAATCATATTCCCGAAT
Found at i:658946 original size:15 final size:15
Alignment explanation
Indices: 658926--658955 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
658916 AAATTACGTA
658926 TAGTGATTGGTCTTG
1 TAGTGATTGGTCTTG
658941 TAGTGATTGGTCTTG
1 TAGTGATTGGTCTTG
658956 AAAGGTGAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.07, G:0.33, T:0.47
Consensus pattern (15 bp):
TAGTGATTGGTCTTG
Left flanking sequence: Indices 658426 -- 658925
GCCGCCATCGCCCGCCTCTCCCACACCAGAGAAGCACATGTTTCTCTACTGCTGCTATAATATGC
TATTGATTGTTGGGTTGGTTTCAGGGAGGGTGTATAGCTCAGTTGGTGGAGCATCGGGCTTTTAA
CCTAATGGTCGCAGGTTCGAGTCCTGCTATACCCACGCCTGCTTGACTGATAGAGGTTATTAATA
CAGTGACCCAAAGTGAGGTCCCGTTCGGAACCAGAACGGACAGTGAGAGGAAGGTGAACAAGGTC
CGAAAAGGACGGACTTTCTTTATCACGTAAGAAAAGGTGGGAATGGTATCGGAATAAAAGGACCC
GCCATGAAGTGGCCAACCAAACCAATAGGTATCACCTTTACAACCTCTCCTACCCCGAATTCTTA
GGTAGTTCCTAACCCCGAATCCAATCCCGAATCATATTCCCGAATAATCTATATTAGGTATAACC
CGGAATGAAGAAAGATTAGTCAGATTATTATTACGAAATTACGTA
Right flanking sequence: Indices 658956 -- 659455
AAAGGTGAATCAAGTAAGGTCCTGGTCCCGCTTGAAATGATGCGTCCTGTGCCGGCCTTCATTTT
GTGCCGGCCTTATCAGTGGCTGGCTGTTTTAGGGGAAGAAATGAAAGGTTGAGGAACCCTCATGA
CTTGGGTTGCGGCAATCAATTGGTTATACCAGTCCCCAAAGGCATTCTCATTGAAGGCAACATTT
GGCGCATCAGAACGGGTCTTCCAGGGATCGAAAGATTTCGCAATAGCTTTACGGTCCAAAGGAGC
ATGCAAGGCTCGACCAGAGGGGGCTTGCCATTTCCACATTGCAAAAGAAACGAGAAGGTAGCCAT
AAAGAAAATATCCCCCTTTATCATGAGCATCTTCACAAGCTTTAAGGTGCGAAGCCGCCAGAGAA
GAAATAGGAGGGGCAAGGACCCGGAGGGGCTTGCGCTTCCTAGTGCAAGGACCGGTAGGGGCTTG
CTTGACGTTAGGAAAGCAAGGTCCCGGAGGGGCTTGCGCTTCCTA
Found at i:659406 original size:32 final size:31
Alignment explanation
Indices: 659358--659464 Score: 97
Period size: 32 Copynumber: 3.2 Consensus size: 31
659348 AATAGGAGGG
659358 GCAAGGACCCGGAGGGGCTTGCGCTTCCTAGT
1 GCAAGGA-CCGGAGGGGCTTGCGCTTCCTAGT
*** **
659390 GCAAGGACCGGTAGGGGCTTGCTTGACGTTAGGAAA
1 GCAAGGACCGG-AGGGGCTTGC--G-C-TTCCTAGT
*
659426 GCAAGGTCCCGGAGGGGCTTGCGCTTCCTAGT
1 GCAAGG-ACCGGAGGGGCTTGCGCTTCCTAGT
659458 GCAAGGA
1 GCAAGGA
659465 ACGTAGTGCT
Statistics
Matches: 57, Mismatches: 12, Indels: 13
0.70 0.15 0.16
Matches are distributed among these distances:
31 4 0.07
32 26 0.46
33 1 0.02
34 2 0.04
35 1 0.02
36 19 0.33
37 4 0.07
ACGTcount: A:0.20, C:0.23, G:0.38, T:0.19
Consensus pattern (31 bp):
GCAAGGACCGGAGGGGCTTGCGCTTCCTAGT
Left flanking sequence: Indices 658858 -- 659357
AATAATCTATATTAGGTATAACCCGGAATGAAGAAAGATTAGTCAGATTATTATTACGAAATTAC
GTATAGTGATTGGTCTTGTAGTGATTGGTCTTGAAAGGTGAATCAAGTAAGGTCCTGGTCCCGCT
TGAAATGATGCGTCCTGTGCCGGCCTTCATTTTGTGCCGGCCTTATCAGTGGCTGGCTGTTTTAG
GGGAAGAAATGAAAGGTTGAGGAACCCTCATGACTTGGGTTGCGGCAATCAATTGGTTATACCAG
TCCCCAAAGGCATTCTCATTGAAGGCAACATTTGGCGCATCAGAACGGGTCTTCCAGGGATCGAA
AGATTTCGCAATAGCTTTACGGTCCAAAGGAGCATGCAAGGCTCGACCAGAGGGGGCTTGCCATT
TCCACATTGCAAAAGAAACGAGAAGGTAGCCATAAAGAAAATATCCCCCTTTATCATGAGCATCT
TCACAAGCTTTAAGGTGCGAAGCCGCCAGAGAAGAAATAGGAGGG
Right flanking sequence: Indices 659465 -- 659964
ACGTAGTGCTTGCTTGACGTTAGGAAAGCAAGGAACTTGAGTTGCTCGACCACCGGGAGAGGACC
CGGCAGGGGGCTCGACTGATAAGGACCTTTAGGTGCTCGACTGTTAAGGAGAGGAGAGGATGCGG
AGCACGCTCGACCAGCGGGAGAGGAATTAATACGTATTTAAGCCCACTGGTTGCTGGGACATTCG
GGAGAGGAAGTACTCAAGCAAGACCTAGGAAAGACTCTTCATTTCAGGTCAGGTCTTCCTTGCCC
CCCGGAGGGACAAGCGGCTTCGCACCTTTAAGGTAAGGAAAGTCAGGTCAGGGAAAGATAAATAA
GGTACGTAGTCGCTTGTCCGCATCGGGCAAGGACCGGTAGGGGCTTGCTTGACGCTAGGAAAGCA
AGGAACTTGAGTTGCTCGACCACCGGGAGAGGACCCGGAGGGGCTTGCGCTTCCTAGTGCAAGGA
ACGTAGTGCTTGCTTGACGTTAGGAAAGCAAGGAACTTGAGTTGC
Found at i:659936 original size:95 final size:95
Alignment explanation
Indices: 659832--660081 Score: 457
Period size: 95 Copynumber: 2.6 Consensus size: 95
659822 ACCGGTAGGG
*
659832 GCTTGCTTGACGCTAGGAAAGCAAGGAACTTGAGTTGCTCGACCACCGGGAGAGGACCCGGAGGG
1 GCTTGCTTGACGTTAGGAAAGCAAGGAACTTGAGTTGCTCGACCACCGGGAGAGGACCCGGAGGG
*
659897 GCTTGCG-CTTCCTAGTGCAAGGAACGTAGT
66 GCCTGCGAC-TCCTAGTGCAAGGAACGTAGT
*
659927 GCTTGCTTGACGTTAGGAAAGCAAGGAACTTGAGTTGCTCGACCACCGGGAGAGGACCCGGCGGG
1 GCTTGCTTGACGTTAGGAAAGCAAGGAACTTGAGTTGCTCGACCACCGGGAGAGGACCCGGAGGG
659992 GCCTGCGACTCCTAGTGCAAGGAACGTAGT
66 GCCTGCGACTCCTAGTGCAAGGAACGTAGT
660022 GCTTGCTTGACGTTAGGAAAGCAAGGAACTTGAGTTGCTCGACCACCGGGAGAGGACCCG
1 GCTTGCTTGACGTTAGGAAAGCAAGGAACTTGAGTTGCTCGACCACCGGGAGAGGACCCG
660082 ACAGGGGGCT
Statistics
Matches: 151, Mismatches: 3, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
95 150 0.99
96 1 0.01
ACGTcount: A:0.24, C:0.24, G:0.34, T:0.18
Consensus pattern (95 bp):
GCTTGCTTGACGTTAGGAAAGCAAGGAACTTGAGTTGCTCGACCACCGGGAGAGGACCCGGAGGG
GCCTGCGACTCCTAGTGCAAGGAACGTAGT
Left flanking sequence: Indices 659332 -- 659831
AAGCCGCCAGAGAAGAAATAGGAGGGGCAAGGACCCGGAGGGGCTTGCGCTTCCTAGTGCAAGGA
CCGGTAGGGGCTTGCTTGACGTTAGGAAAGCAAGGTCCCGGAGGGGCTTGCGCTTCCTAGTGCAA
GGAACGTAGTGCTTGCTTGACGTTAGGAAAGCAAGGAACTTGAGTTGCTCGACCACCGGGAGAGG
ACCCGGCAGGGGGCTCGACTGATAAGGACCTTTAGGTGCTCGACTGTTAAGGAGAGGAGAGGATG
CGGAGCACGCTCGACCAGCGGGAGAGGAATTAATACGTATTTAAGCCCACTGGTTGCTGGGACAT
TCGGGAGAGGAAGTACTCAAGCAAGACCTAGGAAAGACTCTTCATTTCAGGTCAGGTCTTCCTTG
CCCCCCGGAGGGACAAGCGGCTTCGCACCTTTAAGGTAAGGAAAGTCAGGTCAGGGAAAGATAAA
TAAGGTACGTAGTCGCTTGTCCGCATCGGGCAAGGACCGGTAGGG
Right flanking sequence: Indices 660082 -- 660581
ACAGGGGGCTCGACTGATAAGGATGCGCTTTAAGGCTCGACTGTTAACCCCCCAAACCAATAAGT
AAACCCTAACCTTTAGGTGCTCGACCATAAGGACCTTTAGGTGCTCGACCTTAAGGACCTTTAGG
TGCTCGACTGTTAAGGATGCGCAAGCATGCTCGACTGTTAACCCCCCAAACCAATAAGTAAACCC
TAACCTTTAGGTGCTCGACTGATAAGGACCTTTAGGTGCTCGACTGATAAGGACCTTTAGGTGCT
CGACTGTTAAGGAGAGGAGAGGATGCGCAGAGGATGCGTAAGCAGGCTCGACTGATAAGGACCCT
CACCATATGAATAGTGAGTGACCCCTAAAGAATATAGGGCCCTTTAGGGGGCTCGACTGATAAGG
ACCTTTAGGTGCTCGACCCAGGGTTGACTTATTGGGTGGGGCAATAAGTAAACCCAAGAGGAGAG
GACCTTTAGGTGCTCGACCATAGGACCTTTAGGTGCTCGACCTTA
Found at i:660183 original size:24 final size:24
Alignment explanation
Indices: 660155--660219 Score: 121
Period size: 24 Copynumber: 2.7 Consensus size: 24
660145 GTAAACCCTA
660155 ACCTTTAGGTGCTCGACCATAAGG
1 ACCTTTAGGTGCTCGACCATAAGG
*
660179 ACCTTTAGGTGCTCGACCTTAAGG
1 ACCTTTAGGTGCTCGACCATAAGG
660203 ACCTTTAGGTGCTCGAC
1 ACCTTTAGGTGCTCGAC
660220 TGTTAAGGAT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
24 40 1.00
ACGTcount: A:0.22, C:0.26, G:0.25, T:0.28
Consensus pattern (24 bp):
ACCTTTAGGTGCTCGACCATAAGG
Left flanking sequence: Indices 659655 -- 660154
ATTCGGGAGAGGAAGTACTCAAGCAAGACCTAGGAAAGACTCTTCATTTCAGGTCAGGTCTTCCT
TGCCCCCCGGAGGGACAAGCGGCTTCGCACCTTTAAGGTAAGGAAAGTCAGGTCAGGGAAAGATA
AATAAGGTACGTAGTCGCTTGTCCGCATCGGGCAAGGACCGGTAGGGGCTTGCTTGACGCTAGGA
AAGCAAGGAACTTGAGTTGCTCGACCACCGGGAGAGGACCCGGAGGGGCTTGCGCTTCCTAGTGC
AAGGAACGTAGTGCTTGCTTGACGTTAGGAAAGCAAGGAACTTGAGTTGCTCGACCACCGGGAGA
GGACCCGGCGGGGCCTGCGACTCCTAGTGCAAGGAACGTAGTGCTTGCTTGACGTTAGGAAAGCA
AGGAACTTGAGTTGCTCGACCACCGGGAGAGGACCCGACAGGGGGCTCGACTGATAAGGATGCGC
TTTAAGGCTCGACTGTTAACCCCCCAAACCAATAAGTAAACCCTA
Right flanking sequence: Indices 660220 -- 660719
TGTTAAGGATGCGCAAGCATGCTCGACTGTTAACCCCCCAAACCAATAAGTAAACCCTAACCTTT
AGGTGCTCGACTGATAAGGACCTTTAGGTGCTCGACTGATAAGGACCTTTAGGTGCTCGACTGTT
AAGGAGAGGAGAGGATGCGCAGAGGATGCGTAAGCAGGCTCGACTGATAAGGACCCTCACCATAT
GAATAGTGAGTGACCCCTAAAGAATATAGGGCCCTTTAGGGGGCTCGACTGATAAGGACCTTTAG
GTGCTCGACCCAGGGTTGACTTATTGGGTGGGGCAATAAGTAAACCCAAGAGGAGAGGACCTTTA
GGTGCTCGACCATAGGACCTTTAGGTGCTCGACCTTAAGGGAGAGGGAGAGGATGCGTAAGCAGG
CTCGACTGATAAGGACCCTCACCATATGAATAGTGAGTGACCCCTAAAGAATATAGGGCCCTTTA
GGGGGCTCGACTGATAAGGACCTTTAGGTGCTCGACCCAGGGTTG
Found at i:660313 original size:25 final size:25
Alignment explanation
Indices: 660279--660354 Score: 143
Period size: 25 Copynumber: 3.0 Consensus size: 25
660269 GTAAACCCTA
660279 ACCTTTAGGTGCTCGACTGATAAGG
1 ACCTTTAGGTGCTCGACTGATAAGG
660304 ACCTTTAGGTGCTCGACTGATAAGG
1 ACCTTTAGGTGCTCGACTGATAAGG
*
660329 ACCTTTAGGTGCTCGACTGTTAAGG
1 ACCTTTAGGTGCTCGACTGATAAGG
660354 A
1 A
660355 GAGGAGAGGA
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
25 50 1.00
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.29
Consensus pattern (25 bp):
ACCTTTAGGTGCTCGACTGATAAGG
Left flanking sequence: Indices 659779 -- 660278
AAGATAAATAAGGTACGTAGTCGCTTGTCCGCATCGGGCAAGGACCGGTAGGGGCTTGCTTGACG
CTAGGAAAGCAAGGAACTTGAGTTGCTCGACCACCGGGAGAGGACCCGGAGGGGCTTGCGCTTCC
TAGTGCAAGGAACGTAGTGCTTGCTTGACGTTAGGAAAGCAAGGAACTTGAGTTGCTCGACCACC
GGGAGAGGACCCGGCGGGGCCTGCGACTCCTAGTGCAAGGAACGTAGTGCTTGCTTGACGTTAGG
AAAGCAAGGAACTTGAGTTGCTCGACCACCGGGAGAGGACCCGACAGGGGGCTCGACTGATAAGG
ATGCGCTTTAAGGCTCGACTGTTAACCCCCCAAACCAATAAGTAAACCCTAACCTTTAGGTGCTC
GACCATAAGGACCTTTAGGTGCTCGACCTTAAGGACCTTTAGGTGCTCGACTGTTAAGGATGCGC
AAGCATGCTCGACTGTTAACCCCCCAAACCAATAAGTAAACCCTA
Right flanking sequence: Indices 660355 -- 660854
GAGGAGAGGATGCGCAGAGGATGCGTAAGCAGGCTCGACTGATAAGGACCCTCACCATATGAATA
GTGAGTGACCCCTAAAGAATATAGGGCCCTTTAGGGGGCTCGACTGATAAGGACCTTTAGGTGCT
CGACCCAGGGTTGACTTATTGGGTGGGGCAATAAGTAAACCCAAGAGGAGAGGACCTTTAGGTGC
TCGACCATAGGACCTTTAGGTGCTCGACCTTAAGGGAGAGGGAGAGGATGCGTAAGCAGGCTCGA
CTGATAAGGACCCTCACCATATGAATAGTGAGTGACCCCTAAAGAATATAGGGCCCTTTAGGGGG
CTCGACTGATAAGGACCTTTAGGTGCTCGACCCAGGGTTGACTTATTGGGTGGGGCAATAAGTAA
ACCCAAGAGGAGAGGACCTTTAGGTGCTCGACCATAGGACCTTTAGGTGCTCGACCTTAAGGGAG
AGGGAGAGGATGCGTAAGCAGGCTCGACTGATAAGGACCCTCACC
Found at i:660565 original size:23 final size:23
Alignment explanation
Indices: 660535--660578 Score: 88
Period size: 23 Copynumber: 1.9 Consensus size: 23
660525 CCAAGAGGAG
660535 AGGACCTTTAGGTGCTCGACCAT
1 AGGACCTTTAGGTGCTCGACCAT
660558 AGGACCTTTAGGTGCTCGACC
1 AGGACCTTTAGGTGCTCGACC
660579 TTAAGGGAGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.20, C:0.27, G:0.27, T:0.25
Consensus pattern (23 bp):
AGGACCTTTAGGTGCTCGACCAT
Left flanking sequence: Indices 660035 -- 660534
TAGGAAAGCAAGGAACTTGAGTTGCTCGACCACCGGGAGAGGACCCGACAGGGGGCTCGACTGAT
AAGGATGCGCTTTAAGGCTCGACTGTTAACCCCCCAAACCAATAAGTAAACCCTAACCTTTAGGT
GCTCGACCATAAGGACCTTTAGGTGCTCGACCTTAAGGACCTTTAGGTGCTCGACTGTTAAGGAT
GCGCAAGCATGCTCGACTGTTAACCCCCCAAACCAATAAGTAAACCCTAACCTTTAGGTGCTCGA
CTGATAAGGACCTTTAGGTGCTCGACTGATAAGGACCTTTAGGTGCTCGACTGTTAAGGAGAGGA
GAGGATGCGCAGAGGATGCGTAAGCAGGCTCGACTGATAAGGACCCTCACCATATGAATAGTGAG
TGACCCCTAAAGAATATAGGGCCCTTTAGGGGGCTCGACTGATAAGGACCTTTAGGTGCTCGACC
CAGGGTTGACTTATTGGGTGGGGCAATAAGTAAACCCAAGAGGAG
Right flanking sequence: Indices 660579 -- 661078
TTAAGGGAGAGGGAGAGGATGCGTAAGCAGGCTCGACTGATAAGGACCCTCACCATATGAATAGT
GAGTGACCCCTAAAGAATATAGGGCCCTTTAGGGGGCTCGACTGATAAGGACCTTTAGGTGCTCG
ACCCAGGGTTGACTTATTGGGTGGGGCAATAAGTAAACCCAAGAGGAGAGGACCTTTAGGTGCTC
GACCATAGGACCTTTAGGTGCTCGACCTTAAGGGAGAGGGAGAGGATGCGTAAGCAGGCTCGACT
GATAAGGACCCTCACCATATGAATAGTGAGTGACCCCTAAAGAATATAGGGCCCTTTAGGGGGCT
CGACTGATAAGGAGAGGAGAGGACCTTTAGGTGCTCGACTGTTAAGGAGAGGGAGAGGAGAGGGA
GAGGAGAGGAGAGGATGCGCAAGCAGGCTCGACTGTGAAACCCCCCAACCCAATAAGTAAACCCT
AACCTTTAGGTGCTCGACCATAAGGATGCGTAAGCAGGCTCGACT
Found at i:660611 original size:222 final size:222
Alignment explanation
Indices: 660301--660916 Score: 1106
Period size: 222 Copynumber: 2.7 Consensus size: 222
660291 TCGACTGATA
* *
660301 AGGACCTTTAGGTGCTCGACTGATAAGGACCTTTAGGTGCTCGACTGTTAAGGAGAGGAGAGGAT
1 AGGACCTTTAGGTGCTCGAC-CAT-AGGACCTTTAGGTGCTCGAC-CTT-A--AG-GGAGA-G--
660366 GCGCAGAGGATGCGTAAGCAGGCTCGACTGATAAGGACCCTCACCATATGAATAGTGAGTGACCC
56 G-G-AGAGGATGCGTAAGCAGGCTCGACTGATAAGGACCCTCACCATATGAATAGTGAGTGACCC
660431 CTAAAGAATATAGGGCCCTTTAGGGGGCTCGACTGATAAGGACCTTTAGGTGCTCGACCCAGGGT
119 CTAAAGAATATAGGGCCCTTTAGGGGGCTCGACTGATAAGGACCTTTAGGTGCTCGACCCAGGGT
660496 TGACTTATTGGGTGGGGCAATAAGTAAACCCAAGAGGAG
184 TGACTTATTGGGTGGGGCAATAAGTAAACCCAAGAGGAG
660535 AGGACCTTTAGGTGCTCGACCATAGGACCTTTAGGTGCTCGACCTTAAGGGAGAGGGAGAGGATG
1 AGGACCTTTAGGTGCTCGACCATAGGACCTTTAGGTGCTCGACCTTAAGGGAGAGGGAGAGGATG
660600 CGTAAGCAGGCTCGACTGATAAGGACCCTCACCATATGAATAGTGAGTGACCCCTAAAGAATATA
66 CGTAAGCAGGCTCGACTGATAAGGACCCTCACCATATGAATAGTGAGTGACCCCTAAAGAATATA
660665 GGGCCCTTTAGGGGGCTCGACTGATAAGGACCTTTAGGTGCTCGACCCAGGGTTGACTTATTGGG
131 GGGCCCTTTAGGGGGCTCGACTGATAAGGACCTTTAGGTGCTCGACCCAGGGTTGACTTATTGGG
660730 TGGGGCAATAAGTAAACCCAAGAGGAG
196 TGGGGCAATAAGTAAACCCAAGAGGAG
660757 AGGACCTTTAGGTGCTCGACCATAGGACCTTTAGGTGCTCGACCTTAAGGGAGAGGGAGAGGATG
1 AGGACCTTTAGGTGCTCGACCATAGGACCTTTAGGTGCTCGACCTTAAGGGAGAGGGAGAGGATG
660822 CGTAAGCAGGCTCGACTGATAAGGACCCTCACCATATGAATAGTGAGTGACCCCTAAAGAATATA
66 CGTAAGCAGGCTCGACTGATAAGGACCCTCACCATATGAATAGTGAGTGACCCCTAAAGAATATA
660887 GGGCCCTTTAGGGGGCTCGACTGATAAGGA
131 GGGCCCTTTAGGGGGCTCGACTGATAAGGA
660917 GAGGAGAGGA
Statistics
Matches: 380, Mismatches: 2, Indels: 12
0.96 0.01 0.03
Matches are distributed among these distances:
222 325 0.86
223 1 0.00
224 1 0.00
226 1 0.00
227 5 0.01
228 2 0.01
230 1 0.00
231 2 0.01
232 20 0.05
233 2 0.01
234 20 0.05
ACGTcount: A:0.28, C:0.20, G:0.31, T:0.21
Consensus pattern (222 bp):
AGGACCTTTAGGTGCTCGACCATAGGACCTTTAGGTGCTCGACCTTAAGGGAGAGGGAGAGGATG
CGTAAGCAGGCTCGACTGATAAGGACCCTCACCATATGAATAGTGAGTGACCCCTAAAGAATATA
GGGCCCTTTAGGGGGCTCGACTGATAAGGACCTTTAGGTGCTCGACCCAGGGTTGACTTATTGGG
TGGGGCAATAAGTAAACCCAAGAGGAG
Left flanking sequence: Indices 659801 -- 660300
GCTTGTCCGCATCGGGCAAGGACCGGTAGGGGCTTGCTTGACGCTAGGAAAGCAAGGAACTTGAG
TTGCTCGACCACCGGGAGAGGACCCGGAGGGGCTTGCGCTTCCTAGTGCAAGGAACGTAGTGCTT
GCTTGACGTTAGGAAAGCAAGGAACTTGAGTTGCTCGACCACCGGGAGAGGACCCGGCGGGGCCT
GCGACTCCTAGTGCAAGGAACGTAGTGCTTGCTTGACGTTAGGAAAGCAAGGAACTTGAGTTGCT
CGACCACCGGGAGAGGACCCGACAGGGGGCTCGACTGATAAGGATGCGCTTTAAGGCTCGACTGT
TAACCCCCCAAACCAATAAGTAAACCCTAACCTTTAGGTGCTCGACCATAAGGACCTTTAGGTGC
TCGACCTTAAGGACCTTTAGGTGCTCGACTGTTAAGGATGCGCAAGCATGCTCGACTGTTAACCC
CCCAAACCAATAAGTAAACCCTAACCTTTAGGTGCTCGACTGATA
Right flanking sequence: Indices 660917 -- 661416
GAGGAGAGGACCTTTAGGTGCTCGACTGTTAAGGAGAGGGAGAGGAGAGGGAGAGGAGAGGAGAG
GATGCGCAAGCAGGCTCGACTGTGAAACCCCCCAACCCAATAAGTAAACCCTAACCTTTAGGTGC
TCGACCATAAGGATGCGTAAGCAGGCTCGACTGTGAAACCCCCCAACCCAATAAGTAAACCCTAA
CCTTTAGGTGCTCGACTGTTAAGGACCTTTAGGTGCTCGACCCTAAGGACCTTTAGGTGCTCGAC
TGTTAAGGAGAGGGAGAGGAGAGGGAGAGGGAGAGGAGAGGGAAAGATGTTCAAACCTCCGCCCC
CTCCTAATTGGGTGATAAGCCAAAAGAAGAGAATATCAGTCATAAATCTCTCTCCTTCTCTCAGG
AGCATCTCTCTGGTCCTTATCTCAGGAGCAGATCATCTGGTATGACACATATCTCGAGTCATGAC
TGGAAGAAATAGATCGACCATAATGACATATATAATATCTCTCAT
Found at i:660787 original size:23 final size:23
Alignment explanation
Indices: 660757--660800 Score: 88
Period size: 23 Copynumber: 1.9 Consensus size: 23
660747 CCAAGAGGAG
660757 AGGACCTTTAGGTGCTCGACCAT
1 AGGACCTTTAGGTGCTCGACCAT
660780 AGGACCTTTAGGTGCTCGACC
1 AGGACCTTTAGGTGCTCGACC
660801 TTAAGGGAGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.20, C:0.27, G:0.27, T:0.25
Consensus pattern (23 bp):
AGGACCTTTAGGTGCTCGACCAT
Left flanking sequence: Indices 660257 -- 660756
CCAAACCAATAAGTAAACCCTAACCTTTAGGTGCTCGACTGATAAGGACCTTTAGGTGCTCGACT
GATAAGGACCTTTAGGTGCTCGACTGTTAAGGAGAGGAGAGGATGCGCAGAGGATGCGTAAGCAG
GCTCGACTGATAAGGACCCTCACCATATGAATAGTGAGTGACCCCTAAAGAATATAGGGCCCTTT
AGGGGGCTCGACTGATAAGGACCTTTAGGTGCTCGACCCAGGGTTGACTTATTGGGTGGGGCAAT
AAGTAAACCCAAGAGGAGAGGACCTTTAGGTGCTCGACCATAGGACCTTTAGGTGCTCGACCTTA
AGGGAGAGGGAGAGGATGCGTAAGCAGGCTCGACTGATAAGGACCCTCACCATATGAATAGTGAG
TGACCCCTAAAGAATATAGGGCCCTTTAGGGGGCTCGACTGATAAGGACCTTTAGGTGCTCGACC
CAGGGTTGACTTATTGGGTGGGGCAATAAGTAAACCCAAGAGGAG
Right flanking sequence: Indices 660801 -- 661300
TTAAGGGAGAGGGAGAGGATGCGTAAGCAGGCTCGACTGATAAGGACCCTCACCATATGAATAGT
GAGTGACCCCTAAAGAATATAGGGCCCTTTAGGGGGCTCGACTGATAAGGAGAGGAGAGGACCTT
TAGGTGCTCGACTGTTAAGGAGAGGGAGAGGAGAGGGAGAGGAGAGGAGAGGATGCGCAAGCAGG
CTCGACTGTGAAACCCCCCAACCCAATAAGTAAACCCTAACCTTTAGGTGCTCGACCATAAGGAT
GCGTAAGCAGGCTCGACTGTGAAACCCCCCAACCCAATAAGTAAACCCTAACCTTTAGGTGCTCG
ACTGTTAAGGACCTTTAGGTGCTCGACCCTAAGGACCTTTAGGTGCTCGACTGTTAAGGAGAGGG
AGAGGAGAGGGAGAGGGAGAGGAGAGGGAAAGATGTTCAAACCTCCGCCCCCTCCTAATTGGGTG
ATAAGCCAAAAGAAGAGAATATCAGTCATAAATCTCTCTCCTTCT
Found at i:660943 original size:35 final size:37
Alignment explanation
Indices: 660891--660962 Score: 112
Period size: 35 Copynumber: 2.0 Consensus size: 37
660881 AATATAGGGC
660891 CCTTTAGGGGGCTCGACTGATAAGGAGA-GGAGAGGA
1 CCTTTAGGGGGCTCGACTGATAAGGAGAGGGAGAGGA
* *
660927 CCTTTA-GGTGCTCGACTGTTAAGGAGAGGGAGAGGA
1 CCTTTAGGGGGCTCGACTGATAAGGAGAGGGAGAGGA
660963 GAGGGAGAGG
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
35 19 0.58
36 14 0.42
ACGTcount: A:0.26, C:0.14, G:0.40, T:0.19
Consensus pattern (37 bp):
CCTTTAGGGGGCTCGACTGATAAGGAGAGGGAGAGGA
Left flanking sequence: Indices 660391 -- 660890
GACTGATAAGGACCCTCACCATATGAATAGTGAGTGACCCCTAAAGAATATAGGGCCCTTTAGGG
GGCTCGACTGATAAGGACCTTTAGGTGCTCGACCCAGGGTTGACTTATTGGGTGGGGCAATAAGT
AAACCCAAGAGGAGAGGACCTTTAGGTGCTCGACCATAGGACCTTTAGGTGCTCGACCTTAAGGG
AGAGGGAGAGGATGCGTAAGCAGGCTCGACTGATAAGGACCCTCACCATATGAATAGTGAGTGAC
CCCTAAAGAATATAGGGCCCTTTAGGGGGCTCGACTGATAAGGACCTTTAGGTGCTCGACCCAGG
GTTGACTTATTGGGTGGGGCAATAAGTAAACCCAAGAGGAGAGGACCTTTAGGTGCTCGACCATA
GGACCTTTAGGTGCTCGACCTTAAGGGAGAGGGAGAGGATGCGTAAGCAGGCTCGACTGATAAGG
ACCCTCACCATATGAATAGTGAGTGACCCCTAAAGAATATAGGGC
Right flanking sequence: Indices 660963 -- 661462
GAGGGAGAGGAGAGGAGAGGATGCGCAAGCAGGCTCGACTGTGAAACCCCCCAACCCAATAAGTA
AACCCTAACCTTTAGGTGCTCGACCATAAGGATGCGTAAGCAGGCTCGACTGTGAAACCCCCCAA
CCCAATAAGTAAACCCTAACCTTTAGGTGCTCGACTGTTAAGGACCTTTAGGTGCTCGACCCTAA
GGACCTTTAGGTGCTCGACTGTTAAGGAGAGGGAGAGGAGAGGGAGAGGGAGAGGAGAGGGAAAG
ATGTTCAAACCTCCGCCCCCTCCTAATTGGGTGATAAGCCAAAAGAAGAGAATATCAGTCATAAA
TCTCTCTCCTTCTCTCAGGAGCATCTCTCTGGTCCTTATCTCAGGAGCAGATCATCTGGTATGAC
ACATATCTCGAGTCATGACTGGAAGAAATAGATCGACCATAATGACATATATAATATCTCTCATT
CATGATCGGAATGAATGAACCGATCACATAATGACATATGCCCAT
Found at i:660964 original size:11 final size:11
Alignment explanation
Indices: 660948--660983 Score: 65
Period size: 11 Copynumber: 3.4 Consensus size: 11
660938 TCGACTGTTA
660948 AGGAGAGGGAG
1 AGGAGAGGGAG
660959 AGGAGAGGGAG
1 AGGAGAGGGAG
660970 AGGAGA-GGAG
1 AGGAGAGGGAG
660980 AGGA
1 AGGA
660984 TGCGCAAGCA
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
10 8 0.32
11 17 0.68
ACGTcount: A:0.39, C:0.00, G:0.61, T:0.00
Consensus pattern (11 bp):
AGGAGAGGGAG
Left flanking sequence: Indices 660448 -- 660947
CTTTAGGGGGCTCGACTGATAAGGACCTTTAGGTGCTCGACCCAGGGTTGACTTATTGGGTGGGG
CAATAAGTAAACCCAAGAGGAGAGGACCTTTAGGTGCTCGACCATAGGACCTTTAGGTGCTCGAC
CTTAAGGGAGAGGGAGAGGATGCGTAAGCAGGCTCGACTGATAAGGACCCTCACCATATGAATAG
TGAGTGACCCCTAAAGAATATAGGGCCCTTTAGGGGGCTCGACTGATAAGGACCTTTAGGTGCTC
GACCCAGGGTTGACTTATTGGGTGGGGCAATAAGTAAACCCAAGAGGAGAGGACCTTTAGGTGCT
CGACCATAGGACCTTTAGGTGCTCGACCTTAAGGGAGAGGGAGAGGATGCGTAAGCAGGCTCGAC
TGATAAGGACCCTCACCATATGAATAGTGAGTGACCCCTAAAGAATATAGGGCCCTTTAGGGGGC
TCGACTGATAAGGAGAGGAGAGGACCTTTAGGTGCTCGACTGTTA
Right flanking sequence: Indices 660984 -- 661483
TGCGCAAGCAGGCTCGACTGTGAAACCCCCCAACCCAATAAGTAAACCCTAACCTTTAGGTGCTC
GACCATAAGGATGCGTAAGCAGGCTCGACTGTGAAACCCCCCAACCCAATAAGTAAACCCTAACC
TTTAGGTGCTCGACTGTTAAGGACCTTTAGGTGCTCGACCCTAAGGACCTTTAGGTGCTCGACTG
TTAAGGAGAGGGAGAGGAGAGGGAGAGGGAGAGGAGAGGGAAAGATGTTCAAACCTCCGCCCCCT
CCTAATTGGGTGATAAGCCAAAAGAAGAGAATATCAGTCATAAATCTCTCTCCTTCTCTCAGGAG
CATCTCTCTGGTCCTTATCTCAGGAGCAGATCATCTGGTATGACACATATCTCGAGTCATGACTG
GAAGAAATAGATCGACCATAATGACATATATAATATCTCTCATTCATGATCGGAATGAATGAACC
GATCACATAATGACATATGCCCATATCGGAACATTCATGACTCGA
Found at i:660965 original size:5 final size:5
Alignment explanation
Indices: 660948--660983 Score: 54
Period size: 5 Copynumber: 6.8 Consensus size: 5
660938 TCGACTGTTA
660948 AGGAG AGGGAG AGGAG AGGGAG AGGAG AGGAG AGGA
1 AGGAG A-GGAG AGGAG A-GGAG AGGAG AGGAG AGGA
660984 TGCGCAAGCA
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
5 19 0.66
6 10 0.34
ACGTcount: A:0.39, C:0.00, G:0.61, T:0.00
Consensus pattern (5 bp):
AGGAG
Left flanking sequence: Indices 660448 -- 660947
CTTTAGGGGGCTCGACTGATAAGGACCTTTAGGTGCTCGACCCAGGGTTGACTTATTGGGTGGGG
CAATAAGTAAACCCAAGAGGAGAGGACCTTTAGGTGCTCGACCATAGGACCTTTAGGTGCTCGAC
CTTAAGGGAGAGGGAGAGGATGCGTAAGCAGGCTCGACTGATAAGGACCCTCACCATATGAATAG
TGAGTGACCCCTAAAGAATATAGGGCCCTTTAGGGGGCTCGACTGATAAGGACCTTTAGGTGCTC
GACCCAGGGTTGACTTATTGGGTGGGGCAATAAGTAAACCCAAGAGGAGAGGACCTTTAGGTGCT
CGACCATAGGACCTTTAGGTGCTCGACCTTAAGGGAGAGGGAGAGGATGCGTAAGCAGGCTCGAC
TGATAAGGACCCTCACCATATGAATAGTGAGTGACCCCTAAAGAATATAGGGCCCTTTAGGGGGC
TCGACTGATAAGGAGAGGAGAGGACCTTTAGGTGCTCGACTGTTA
Right flanking sequence: Indices 660984 -- 661483
TGCGCAAGCAGGCTCGACTGTGAAACCCCCCAACCCAATAAGTAAACCCTAACCTTTAGGTGCTC
GACCATAAGGATGCGTAAGCAGGCTCGACTGTGAAACCCCCCAACCCAATAAGTAAACCCTAACC
TTTAGGTGCTCGACTGTTAAGGACCTTTAGGTGCTCGACCCTAAGGACCTTTAGGTGCTCGACTG
TTAAGGAGAGGGAGAGGAGAGGGAGAGGGAGAGGAGAGGGAAAGATGTTCAAACCTCCGCCCCCT
CCTAATTGGGTGATAAGCCAAAAGAAGAGAATATCAGTCATAAATCTCTCTCCTTCTCTCAGGAG
CATCTCTCTGGTCCTTATCTCAGGAGCAGATCATCTGGTATGACACATATCTCGAGTCATGACTG
GAAGAAATAGATCGACCATAATGACATATATAATATCTCTCATTCATGATCGGAATGAATGAACC
GATCACATAATGACATATGCCCATATCGGAACATTCATGACTCGA
Found at i:660976 original size:16 final size:17
Alignment explanation
Indices: 660949--660982 Score: 61
Period size: 16 Copynumber: 2.1 Consensus size: 17
660939 CGACTGTTAA
660949 GGAGAGGGAGAGGAGAG
1 GGAGAGGGAGAGGAGAG
660966 GGAGA-GGAGAGGAGAG
1 GGAGAGGGAGAGGAGAG
660982 G
1 G
660983 ATGCGCAAGC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 12 0.71
17 5 0.29
ACGTcount: A:0.35, C:0.00, G:0.65, T:0.00
Consensus pattern (17 bp):
GGAGAGGGAGAGGAGAG
Left flanking sequence: Indices 660449 -- 660948
TTTAGGGGGCTCGACTGATAAGGACCTTTAGGTGCTCGACCCAGGGTTGACTTATTGGGTGGGGC
AATAAGTAAACCCAAGAGGAGAGGACCTTTAGGTGCTCGACCATAGGACCTTTAGGTGCTCGACC
TTAAGGGAGAGGGAGAGGATGCGTAAGCAGGCTCGACTGATAAGGACCCTCACCATATGAATAGT
GAGTGACCCCTAAAGAATATAGGGCCCTTTAGGGGGCTCGACTGATAAGGACCTTTAGGTGCTCG
ACCCAGGGTTGACTTATTGGGTGGGGCAATAAGTAAACCCAAGAGGAGAGGACCTTTAGGTGCTC
GACCATAGGACCTTTAGGTGCTCGACCTTAAGGGAGAGGGAGAGGATGCGTAAGCAGGCTCGACT
GATAAGGACCCTCACCATATGAATAGTGAGTGACCCCTAAAGAATATAGGGCCCTTTAGGGGGCT
CGACTGATAAGGAGAGGAGAGGACCTTTAGGTGCTCGACTGTTAA
Right flanking sequence: Indices 660983 -- 661482
ATGCGCAAGCAGGCTCGACTGTGAAACCCCCCAACCCAATAAGTAAACCCTAACCTTTAGGTGCT
CGACCATAAGGATGCGTAAGCAGGCTCGACTGTGAAACCCCCCAACCCAATAAGTAAACCCTAAC
CTTTAGGTGCTCGACTGTTAAGGACCTTTAGGTGCTCGACCCTAAGGACCTTTAGGTGCTCGACT
GTTAAGGAGAGGGAGAGGAGAGGGAGAGGGAGAGGAGAGGGAAAGATGTTCAAACCTCCGCCCCC
TCCTAATTGGGTGATAAGCCAAAAGAAGAGAATATCAGTCATAAATCTCTCTCCTTCTCTCAGGA
GCATCTCTCTGGTCCTTATCTCAGGAGCAGATCATCTGGTATGACACATATCTCGAGTCATGACT
GGAAGAAATAGATCGACCATAATGACATATATAATATCTCTCATTCATGATCGGAATGAATGAAC
CGATCACATAATGACATATGCCCATATCGGAACATTCATGACTCG
Found at i:661106 original size:76 final size:76
Alignment explanation
Indices: 660980--661127 Score: 287
Period size: 76 Copynumber: 1.9 Consensus size: 76
660970 AGGAGAGGAG
660980 AGGATGCGCAAGCAGGCTCGACTGTGAAACCCCCCAACCCAATAAGTAAACCCTAACCTTTAGGT
1 AGGATGCGCAAGCAGGCTCGACTGTGAAACCCCCCAACCCAATAAGTAAACCCTAACCTTTAGGT
661045 GCTCGACCATA
66 GCTCGACCATA
*
661056 AGGATGCGTAAGCAGGCTCGACTGTGAAACCCCCCAACCCAATAAGTAAACCCTAACCTTTAGGT
1 AGGATGCGCAAGCAGGCTCGACTGTGAAACCCCCCAACCCAATAAGTAAACCCTAACCTTTAGGT
661121 GCTCGAC
66 GCTCGAC
661128 TGTTAAGGAC
Statistics
Matches: 71, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
76 71 1.00
ACGTcount: A:0.31, C:0.31, G:0.20, T:0.18
Consensus pattern (76 bp):
AGGATGCGCAAGCAGGCTCGACTGTGAAACCCCCCAACCCAATAAGTAAACCCTAACCTTTAGGT
GCTCGACCATA
Left flanking sequence: Indices 660480 -- 660979
GTGCTCGACCCAGGGTTGACTTATTGGGTGGGGCAATAAGTAAACCCAAGAGGAGAGGACCTTTA
GGTGCTCGACCATAGGACCTTTAGGTGCTCGACCTTAAGGGAGAGGGAGAGGATGCGTAAGCAGG
CTCGACTGATAAGGACCCTCACCATATGAATAGTGAGTGACCCCTAAAGAATATAGGGCCCTTTA
GGGGGCTCGACTGATAAGGACCTTTAGGTGCTCGACCCAGGGTTGACTTATTGGGTGGGGCAATA
AGTAAACCCAAGAGGAGAGGACCTTTAGGTGCTCGACCATAGGACCTTTAGGTGCTCGACCTTAA
GGGAGAGGGAGAGGATGCGTAAGCAGGCTCGACTGATAAGGACCCTCACCATATGAATAGTGAGT
GACCCCTAAAGAATATAGGGCCCTTTAGGGGGCTCGACTGATAAGGAGAGGAGAGGACCTTTAGG
TGCTCGACTGTTAAGGAGAGGGAGAGGAGAGGGAGAGGAGAGGAG
Right flanking sequence: Indices 661128 -- 661627
TGTTAAGGACCTTTAGGTGCTCGACCCTAAGGACCTTTAGGTGCTCGACTGTTAAGGAGAGGGAG
AGGAGAGGGAGAGGGAGAGGAGAGGGAAAGATGTTCAAACCTCCGCCCCCTCCTAATTGGGTGAT
AAGCCAAAAGAAGAGAATATCAGTCATAAATCTCTCTCCTTCTCTCAGGAGCATCTCTCTGGTCC
TTATCTCAGGAGCAGATCATCTGGTATGACACATATCTCGAGTCATGACTGGAAGAAATAGATCG
ACCATAATGACATATATAATATCTCTCATTCATGATCGGAATGAATGAACCGATCACATAATGAC
ATATGCCCATATCGGAACATTCATGACTCGATATTTGTCATTATGCCTTAGCAGATCATGCTGCT
ATGGGCATATGTCATTATGCAATCTCAGAATCGTAGGAGCGGTCATTCCAGATATGGGCATATGT
CATTACGCTTGAACGAACGAGCGATTGACACGATCGAGAGAGGCT
Found at i:661139 original size:25 final size:25
Alignment explanation
Indices: 661111--661185 Score: 125
Period size: 25 Copynumber: 3.0 Consensus size: 25
661101 GTAAACCCTA
661111 ACCTTTAGGTGCTCGACTGTTAAGG
1 ACCTTTAGGTGCTCGACTGTTAAGG
**
661136 ACCTTTAGGTGCTCGAC-CCTAAGG
1 ACCTTTAGGTGCTCGACTGTTAAGG
661160 ACCTTTAGGTGCTCGACTGTTAAGG
1 ACCTTTAGGTGCTCGACTGTTAAGG
661185 A
1 A
661186 GAGGGAGAGG
Statistics
Matches: 45, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
24 22 0.49
25 23 0.51
ACGTcount: A:0.21, C:0.23, G:0.27, T:0.29
Consensus pattern (25 bp):
ACCTTTAGGTGCTCGACTGTTAAGG
Left flanking sequence: Indices 660611 -- 661110
TCGACTGATAAGGACCCTCACCATATGAATAGTGAGTGACCCCTAAAGAATATAGGGCCCTTTAG
GGGGCTCGACTGATAAGGACCTTTAGGTGCTCGACCCAGGGTTGACTTATTGGGTGGGGCAATAA
GTAAACCCAAGAGGAGAGGACCTTTAGGTGCTCGACCATAGGACCTTTAGGTGCTCGACCTTAAG
GGAGAGGGAGAGGATGCGTAAGCAGGCTCGACTGATAAGGACCCTCACCATATGAATAGTGAGTG
ACCCCTAAAGAATATAGGGCCCTTTAGGGGGCTCGACTGATAAGGAGAGGAGAGGACCTTTAGGT
GCTCGACTGTTAAGGAGAGGGAGAGGAGAGGGAGAGGAGAGGAGAGGATGCGCAAGCAGGCTCGA
CTGTGAAACCCCCCAACCCAATAAGTAAACCCTAACCTTTAGGTGCTCGACCATAAGGATGCGTA
AGCAGGCTCGACTGTGAAACCCCCCAACCCAATAAGTAAACCCTA
Right flanking sequence: Indices 661186 -- 661685
GAGGGAGAGGAGAGGGAGAGGGAGAGGAGAGGGAAAGATGTTCAAACCTCCGCCCCCTCCTAATT
GGGTGATAAGCCAAAAGAAGAGAATATCAGTCATAAATCTCTCTCCTTCTCTCAGGAGCATCTCT
CTGGTCCTTATCTCAGGAGCAGATCATCTGGTATGACACATATCTCGAGTCATGACTGGAAGAAA
TAGATCGACCATAATGACATATATAATATCTCTCATTCATGATCGGAATGAATGAACCGATCACA
TAATGACATATGCCCATATCGGAACATTCATGACTCGATATTTGTCATTATGCCTTAGCAGATCA
TGCTGCTATGGGCATATGTCATTATGCAATCTCAGAATCGTAGGAGCGGTCATTCCAGATATGGG
CATATGTCATTACGCTTGAACGAACGAGCGATTGACACGATCGAGAGAGGCTCATTCCCTCTTCC
ATCGAAACAAAGGGAAAGATCCATCCTTCGAGGTCCCAATCCTGA
Found at i:661163 original size:24 final size:25
Alignment explanation
Indices: 661111--661177 Score: 109
Period size: 24 Copynumber: 2.7 Consensus size: 25
661101 GTAAACCCTA
**
661111 ACCTTTAGGTGCTCGACTGTTAAGG
1 ACCTTTAGGTGCTCGACTCCTAAGG
661136 ACCTTTAGGTGCTCGAC-CCTAAGG
1 ACCTTTAGGTGCTCGACTCCTAAGG
661160 ACCTTTAGGTGCTCGACT
1 ACCTTTAGGTGCTCGACT
661178 GTTAAGGAGA
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
24 22 0.56
25 17 0.44
ACGTcount: A:0.19, C:0.25, G:0.25, T:0.30
Consensus pattern (25 bp):
ACCTTTAGGTGCTCGACTCCTAAGG
Left flanking sequence: Indices 660611 -- 661110
TCGACTGATAAGGACCCTCACCATATGAATAGTGAGTGACCCCTAAAGAATATAGGGCCCTTTAG
GGGGCTCGACTGATAAGGACCTTTAGGTGCTCGACCCAGGGTTGACTTATTGGGTGGGGCAATAA
GTAAACCCAAGAGGAGAGGACCTTTAGGTGCTCGACCATAGGACCTTTAGGTGCTCGACCTTAAG
GGAGAGGGAGAGGATGCGTAAGCAGGCTCGACTGATAAGGACCCTCACCATATGAATAGTGAGTG
ACCCCTAAAGAATATAGGGCCCTTTAGGGGGCTCGACTGATAAGGAGAGGAGAGGACCTTTAGGT
GCTCGACTGTTAAGGAGAGGGAGAGGAGAGGGAGAGGAGAGGAGAGGATGCGCAAGCAGGCTCGA
CTGTGAAACCCCCCAACCCAATAAGTAAACCCTAACCTTTAGGTGCTCGACCATAAGGATGCGTA
AGCAGGCTCGACTGTGAAACCCCCCAACCCAATAAGTAAACCCTA
Right flanking sequence: Indices 661178 -- 661677
GTTAAGGAGAGGGAGAGGAGAGGGAGAGGGAGAGGAGAGGGAAAGATGTTCAAACCTCCGCCCCC
TCCTAATTGGGTGATAAGCCAAAAGAAGAGAATATCAGTCATAAATCTCTCTCCTTCTCTCAGGA
GCATCTCTCTGGTCCTTATCTCAGGAGCAGATCATCTGGTATGACACATATCTCGAGTCATGACT
GGAAGAAATAGATCGACCATAATGACATATATAATATCTCTCATTCATGATCGGAATGAATGAAC
CGATCACATAATGACATATGCCCATATCGGAACATTCATGACTCGATATTTGTCATTATGCCTTA
GCAGATCATGCTGCTATGGGCATATGTCATTATGCAATCTCAGAATCGTAGGAGCGGTCATTCCA
GATATGGGCATATGTCATTACGCTTGAACGAACGAGCGATTGACACGATCGAGAGAGGCTCATTC
CCTCTTCCATCGAAACAAAGGGAAAGATCCATCCTTCGAGGTCCC
Found at i:661194 original size:6 final size:6
Alignment explanation
Indices: 661183--661219 Score: 60
Period size: 6 Copynumber: 6.5 Consensus size: 6
661173 CGACTGTTAA
661183 GGAGAG GGAGA- GGAGAG GGAGAG GGAGA- GGAGAG GGA
1 GGAGAG GGAGAG GGAGAG GGAGAG GGAGAG GGAGAG GGA
661220 AAGATGTTCA
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
5 10 0.34
6 19 0.66
ACGTcount: A:0.35, C:0.00, G:0.65, T:0.00
Consensus pattern (6 bp):
GGAGAG
Left flanking sequence: Indices 660683 -- 661182
GACTGATAAGGACCTTTAGGTGCTCGACCCAGGGTTGACTTATTGGGTGGGGCAATAAGTAAACC
CAAGAGGAGAGGACCTTTAGGTGCTCGACCATAGGACCTTTAGGTGCTCGACCTTAAGGGAGAGG
GAGAGGATGCGTAAGCAGGCTCGACTGATAAGGACCCTCACCATATGAATAGTGAGTGACCCCTA
AAGAATATAGGGCCCTTTAGGGGGCTCGACTGATAAGGAGAGGAGAGGACCTTTAGGTGCTCGAC
TGTTAAGGAGAGGGAGAGGAGAGGGAGAGGAGAGGAGAGGATGCGCAAGCAGGCTCGACTGTGAA
ACCCCCCAACCCAATAAGTAAACCCTAACCTTTAGGTGCTCGACCATAAGGATGCGTAAGCAGGC
TCGACTGTGAAACCCCCCAACCCAATAAGTAAACCCTAACCTTTAGGTGCTCGACTGTTAAGGAC
CTTTAGGTGCTCGACCCTAAGGACCTTTAGGTGCTCGACTGTTAA
Right flanking sequence: Indices 661220 -- 661719
AAGATGTTCAAACCTCCGCCCCCTCCTAATTGGGTGATAAGCCAAAAGAAGAGAATATCAGTCAT
AAATCTCTCTCCTTCTCTCAGGAGCATCTCTCTGGTCCTTATCTCAGGAGCAGATCATCTGGTAT
GACACATATCTCGAGTCATGACTGGAAGAAATAGATCGACCATAATGACATATATAATATCTCTC
ATTCATGATCGGAATGAATGAACCGATCACATAATGACATATGCCCATATCGGAACATTCATGAC
TCGATATTTGTCATTATGCCTTAGCAGATCATGCTGCTATGGGCATATGTCATTATGCAATCTCA
GAATCGTAGGAGCGGTCATTCCAGATATGGGCATATGTCATTACGCTTGAACGAACGAGCGATTG
ACACGATCGAGAGAGGCTCATTCCCTCTTCCATCGAAACAAAGGGAAAGATCCATCCTTCGAGGT
CCCAATCCTGATAAGAGAAGGGTTGTGAATAGCAGTACCGACTGA
Found at i:661205 original size:17 final size:17
Alignment explanation
Indices: 661183--661219 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
661173 CGACTGTTAA
661183 GGAGAGGGAGAGGAGAG
1 GGAGAGGGAGAGGAGAG
661200 GGAGAGGGAGAGGAGAG
1 GGAGAGGGAGAGGAGAG
661217 GGA
1 GGA
661220 AAGATGTTCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.35, C:0.00, G:0.65, T:0.00
Consensus pattern (17 bp):
GGAGAGGGAGAGGAGAG
Left flanking sequence: Indices 660683 -- 661182
GACTGATAAGGACCTTTAGGTGCTCGACCCAGGGTTGACTTATTGGGTGGGGCAATAAGTAAACC
CAAGAGGAGAGGACCTTTAGGTGCTCGACCATAGGACCTTTAGGTGCTCGACCTTAAGGGAGAGG
GAGAGGATGCGTAAGCAGGCTCGACTGATAAGGACCCTCACCATATGAATAGTGAGTGACCCCTA
AAGAATATAGGGCCCTTTAGGGGGCTCGACTGATAAGGAGAGGAGAGGACCTTTAGGTGCTCGAC
TGTTAAGGAGAGGGAGAGGAGAGGGAGAGGAGAGGAGAGGATGCGCAAGCAGGCTCGACTGTGAA
ACCCCCCAACCCAATAAGTAAACCCTAACCTTTAGGTGCTCGACCATAAGGATGCGTAAGCAGGC
TCGACTGTGAAACCCCCCAACCCAATAAGTAAACCCTAACCTTTAGGTGCTCGACTGTTAAGGAC
CTTTAGGTGCTCGACCCTAAGGACCTTTAGGTGCTCGACTGTTAA
Right flanking sequence: Indices 661220 -- 661719
AAGATGTTCAAACCTCCGCCCCCTCCTAATTGGGTGATAAGCCAAAAGAAGAGAATATCAGTCAT
AAATCTCTCTCCTTCTCTCAGGAGCATCTCTCTGGTCCTTATCTCAGGAGCAGATCATCTGGTAT
GACACATATCTCGAGTCATGACTGGAAGAAATAGATCGACCATAATGACATATATAATATCTCTC
ATTCATGATCGGAATGAATGAACCGATCACATAATGACATATGCCCATATCGGAACATTCATGAC
TCGATATTTGTCATTATGCCTTAGCAGATCATGCTGCTATGGGCATATGTCATTATGCAATCTCA
GAATCGTAGGAGCGGTCATTCCAGATATGGGCATATGTCATTACGCTTGAACGAACGAGCGATTG
ACACGATCGAGAGAGGCTCATTCCCTCTTCCATCGAAACAAAGGGAAAGATCCATCCTTCGAGGT
CCCAATCCTGATAAGAGAAGGGTTGTGAATAGCAGTACCGACTGA
Found at i:661219 original size:11 final size:11
Alignment explanation
Indices: 661182--661217 Score: 56
Period size: 11 Copynumber: 3.3 Consensus size: 11
661172 TCGACTGTTA
661182 AGGAGAGGGAG
1 AGGAGAGGGAG
661193 AGGAGAGGGAG
1 AGGAGAGGGAG
661204 AGG-GAGAGGAG
1 AGGAGAG-GGAG
661215 AGG
1 AGG
661218 GAAAGATGTT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
10 3 0.12
11 21 0.88
ACGTcount: A:0.36, C:0.00, G:0.64, T:0.00
Consensus pattern (11 bp):
AGGAGAGGGAG
Left flanking sequence: Indices 660682 -- 661181
CGACTGATAAGGACCTTTAGGTGCTCGACCCAGGGTTGACTTATTGGGTGGGGCAATAAGTAAAC
CCAAGAGGAGAGGACCTTTAGGTGCTCGACCATAGGACCTTTAGGTGCTCGACCTTAAGGGAGAG
GGAGAGGATGCGTAAGCAGGCTCGACTGATAAGGACCCTCACCATATGAATAGTGAGTGACCCCT
AAAGAATATAGGGCCCTTTAGGGGGCTCGACTGATAAGGAGAGGAGAGGACCTTTAGGTGCTCGA
CTGTTAAGGAGAGGGAGAGGAGAGGGAGAGGAGAGGAGAGGATGCGCAAGCAGGCTCGACTGTGA
AACCCCCCAACCCAATAAGTAAACCCTAACCTTTAGGTGCTCGACCATAAGGATGCGTAAGCAGG
CTCGACTGTGAAACCCCCCAACCCAATAAGTAAACCCTAACCTTTAGGTGCTCGACTGTTAAGGA
CCTTTAGGTGCTCGACCCTAAGGACCTTTAGGTGCTCGACTGTTA
Right flanking sequence: Indices 661218 -- 661717
GAAAGATGTTCAAACCTCCGCCCCCTCCTAATTGGGTGATAAGCCAAAAGAAGAGAATATCAGTC
ATAAATCTCTCTCCTTCTCTCAGGAGCATCTCTCTGGTCCTTATCTCAGGAGCAGATCATCTGGT
ATGACACATATCTCGAGTCATGACTGGAAGAAATAGATCGACCATAATGACATATATAATATCTC
TCATTCATGATCGGAATGAATGAACCGATCACATAATGACATATGCCCATATCGGAACATTCATG
ACTCGATATTTGTCATTATGCCTTAGCAGATCATGCTGCTATGGGCATATGTCATTATGCAATCT
CAGAATCGTAGGAGCGGTCATTCCAGATATGGGCATATGTCATTACGCTTGAACGAACGAGCGAT
TGACACGATCGAGAGAGGCTCATTCCCTCTTCCATCGAAACAAAGGGAAAGATCCATCCTTCGAG
GTCCCAATCCTGATAAGAGAAGGGTTGTGAATAGCAGTACCGACT
Found at i:661313 original size:23 final size:24
Alignment explanation
Indices: 661287--661336 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 24
661277 TCAGTCATAA
*
661287 ATCTCTC-TCCTTCTCTCAGGAGC
1 ATCTCTCGTCCTTATCTCAGGAGC
661310 ATCTCTCTGGTCCTTATCTCAGGAGC
1 ATCTCTC--GTCCTTATCTCAGGAGC
661336 A
1 A
661337 GATCATCTGG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
23 7 0.30
26 16 0.70
ACGTcount: A:0.16, C:0.34, G:0.16, T:0.34
Consensus pattern (24 bp):
ATCTCTCGTCCTTATCTCAGGAGC
Left flanking sequence: Indices 660787 -- 661286
TTAGGTGCTCGACCTTAAGGGAGAGGGAGAGGATGCGTAAGCAGGCTCGACTGATAAGGACCCTC
ACCATATGAATAGTGAGTGACCCCTAAAGAATATAGGGCCCTTTAGGGGGCTCGACTGATAAGGA
GAGGAGAGGACCTTTAGGTGCTCGACTGTTAAGGAGAGGGAGAGGAGAGGGAGAGGAGAGGAGAG
GATGCGCAAGCAGGCTCGACTGTGAAACCCCCCAACCCAATAAGTAAACCCTAACCTTTAGGTGC
TCGACCATAAGGATGCGTAAGCAGGCTCGACTGTGAAACCCCCCAACCCAATAAGTAAACCCTAA
CCTTTAGGTGCTCGACTGTTAAGGACCTTTAGGTGCTCGACCCTAAGGACCTTTAGGTGCTCGAC
TGTTAAGGAGAGGGAGAGGAGAGGGAGAGGGAGAGGAGAGGGAAAGATGTTCAAACCTCCGCCCC
CTCCTAATTGGGTGATAAGCCAAAAGAAGAGAATATCAGTCATAA
Right flanking sequence: Indices 661337 -- 661836
GATCATCTGGTATGACACATATCTCGAGTCATGACTGGAAGAAATAGATCGACCATAATGACATA
TATAATATCTCTCATTCATGATCGGAATGAATGAACCGATCACATAATGACATATGCCCATATCG
GAACATTCATGACTCGATATTTGTCATTATGCCTTAGCAGATCATGCTGCTATGGGCATATGTCA
TTATGCAATCTCAGAATCGTAGGAGCGGTCATTCCAGATATGGGCATATGTCATTACGCTTGAAC
GAACGAGCGATTGACACGATCGAGAGAGGCTCATTCCCTCTTCCATCGAAACAAAGGGAAAGATC
CATCCTTCGAGGTCCCAATCCTGATAAGAGAAGGGTTGTGAATAGCAGTACCGACTGACTAAGCG
ATGAATTCATCAAGTGGTATAGGTAGAAAAGGTATAGTTCTTCAGGTGGGTAGGTTGGTAAGAGT
GAAGGTAAAGGGAAGGGTTGTATCATGGCATCCCGGGTCTATAGC
Found at i:666910 original size:14 final size:14
Alignment explanation
Indices: 666891--666919 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
666881 ATGGCTTAAG
666891 AAAGACCTTACTCT
1 AAAGACCTTACTCT
666905 AAAGACCTTACTCT
1 AAAGACCTTACTCT
666919 A
1 A
666920 CTGTCGCCGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.38, C:0.28, G:0.07, T:0.28
Consensus pattern (14 bp):
AAAGACCTTACTCT
Left flanking sequence: Indices 666391 -- 666890
TATCGAGAACAGTTCACGTCGAACTGGGCATGGTGGGTCACACAAATTGTAACACCTCTTGGGCA
GGGTGGAAAGAAAAGCAGTAACAACCACCACCTCCTCCTGTACATGGGTAGAGTGCTTTTTTGAA
GGCCTGTTAAGCTAGCTGTCTTTGCTGTGTATGGGTAAGCCTCTGTAGGAACTGTGTTTCCATCT
TCAGTTTGATATGGGTCAATTCTATTCTCCTTCCTATCGGCTATGGAAGTGGTGGGCCTGGGTGC
AAGGACATATCTATAATAGAGAAACTTCCAGAAATGGCCCATTTAAGTAATTAGTAAGAATGCCA
CTTCAGGAACTTCAAGACCATAGGGAAACTCTACAGACTTATTCAAGTAAGTAAGCAAAAGCTTA
TAGTCATCTATCCATGCAACTAAGTCATACATAGAGACTAATAAAGTGTCTAAAGGGTAATTGAC
ATGGAAGGCTTAAGGCACTTCAGGGCTTGAACTCTATGGCTTAAG
Right flanking sequence: Indices 666920 -- 667419
CTGTCGCCGATAGACAGTGTCTTATTCCCAGGAAGTTGTCAGTGCCAGCCGGGAAGCCAATAATA
CCACACATCAAAGCTAATCATTGAATGAAGAAGGAAAGGAAGGGGACTAGCTTATTATCCACTCT
ATGGCCGGAGACTACCTTATGGCAGTCTATAAAGCTAATACTAAGGCTATTACTGGAGCTTACTC
TAGGGAACTTACTGCTTATTAGTGCTTGAACTTTCACTATCAGGTCGATAGAGAGAGCGTAAGGC
TTTCATAACTATGCTACCGTAGCTAAGGCAATAAGAAGGGCAAGACTAAGCTAGTGTCCAGTAGA
GAGGGGGACTAAAGCTAAGACTAGAGGATAGTAGTTAGACCTTTTCTGAAACTATTACTGTTTTA
TGCTCATGTTCCTTAGGTCAGATTCACCTAAGCAAAAAGAAGATTTGTAGTAACGCTGCAAGCTC
CTCCTCAAAAGCAGGCTTGAGCAACCTCACCTCACTTGGCAAATG
Found at i:672971 original size:13 final size:14
Alignment explanation
Indices: 672953--672986 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
672943 AGCTAACACC
672953 TGATTAG-CCAATT
1 TGATTAGTCCAATT
672966 TGATTAGTCCAATT
1 TGATTAGTCCAATT
*
672980 CGATTAG
1 TGATTAG
672987 AGTGGAATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 7 0.37
14 12 0.63
ACGTcount: A:0.29, C:0.15, G:0.18, T:0.38
Consensus pattern (14 bp):
TGATTAGTCCAATT
Left flanking sequence: Indices 672453 -- 672952
TCGAACCGGCTTCTCTCGGCTATGACAGGTGGTGACCAGCGGGTATGTCTCCCTTGTATTGGCTA
GCGGCAGCTCACACACTATTGCTCTTCTTATTCTCGTATATTGGCTAGCGGCAGCTCACACACTA
CTATTTTCCGGGCCTCACCCCAAACGATGGCTGTTCCCGTGTCCGGTAAGTGAAAGTGAAAGATT
GGTATTTTGATCTGTAGGCCCTGCTCTGCCAATGTGTGTTGTACCCTGCTCTGCCGATGTGGGAA
ATAACTAACTAACTAACTGGTGCTACTCCCCATGGCTTACTGTCCTTGGGTCACGGAGAACACGA
CTGCTTAACTGGGAAGTCAAACAGGTCACGTCAAACTGGGCATGGGGTATTGTCAACGGGTCACA
GCGTCTAGTTTACCGATACAGGTTCGATGAATATAGTTTCTATCTTCTTTTCTGAGTGAGAAGGT
TCTTCTATCACTGACCGTATCTATCCCATCCCGGTAGCTAACACC
Right flanking sequence: Indices 672987 -- 673486
AGTGGAATATCGCAGTCGATTAGTTCAGTTGAAATAGCGTATTCTGAGTAACCAAGCTCAGTCTA
TTAGCCAAGCCAATTGGGTCATCCCAGTGTATTAGGGGTATCAAAGCGGACCAAGCGGAGTCTAG
TATAGTTTCAAAGTAGAGAGTATCCTGTCCTATATCTATGAAAGTAATGGAGTACCAGCATATAG
TAGCAGCATCGACTCTTGGGATCAAGTACCAGCATCAACTGCGTAGCCTCTTGGCATTGAGTGTA
TTATAATTAACACGAGTAATGGAGTACCGGCATCAAGTGAATCACAACCAGCAGTCATAATCGAG
TCAATAACTACCTATCTGGATCGGCAGCATCGCCTGCCTCTTGGCATTTACACAACTACGTACAG
GTAGCAATGGCTCGATCAGCATTTAGTTGCTTCCCGTCCATTTCTATCAGGGTGGACGTCACTAA
CATACCCCTACCCGAAGTTGACTGATCCAAACTCCCAATCTCTGG
Found at i:677008 original size:22 final size:23
Alignment explanation
Indices: 676927--676988 Score: 124
Period size: 23 Copynumber: 2.7 Consensus size: 23
676917 GTGAATGCTG
676927 GGGCCGTGAGATGGCTACTTATC
1 GGGCCGTGAGATGGCTACTTATC
676950 GGGCCGTGAGATGGCTACTTATC
1 GGGCCGTGAGATGGCTACTTATC
676973 GGGCCGTGAGATGGCT
1 GGGCCGTGAGATGGCT
676989 CGTATTGGGA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 39 1.00
ACGTcount: A:0.16, C:0.21, G:0.39, T:0.24
Consensus pattern (23 bp):
GGGCCGTGAGATGGCTACTTATC
Left flanking sequence: Indices 676427 -- 676926
TGGTTTCTTCAATACGTGTCCTGGGCGGTATCCTCTTCCTTCTTCTTCCTTAGGCGTACTGGGCG
TTGTTTGACGTGTGGGGATGCGGGCGTGACTGTGAGAATGCAGGTAGAATGCGGGGATGGGAGGA
TGCGGGTATACTGGTTATACTGTGATACGAGACTGGTATAATGCATATTGAATGGGTGACGGTGG
ACTGGGCAGGTGTTTGAGGCGTACTGTGCCTTGGGTGCCGTGGAGTTGTAGGTTCGGGTAGGATT
TTTTTGTAGTAGGGGAGTTTCTGCGGATGTTACCTCCTCATATTGGGACGTTATATGGGGAGTTG
ATCGGTACGTGAGATGGGTATGAAGGGGACGTGATCTGACAGTGAATGATGGGTACGAAAGATTT
CAACACTAATGGTACATGAGATGTAATCAAGTAAGAAAGCTAATCTGTCAGTTTTGTATTGGGAC
GTGAGATGTGTATATGACGGGTACGTGATCTGTCAGTGAATGCTG
Right flanking sequence: Indices 676989 -- 677488
CGTATTGGGACATGAGATGGGTTGATTGGGCCGTCTGTGAATGATGGTCCTAAAGCTGTGAATGA
GGGGTACGTGAGATTGAACCTCGATGGGGAATGACCTTATCCCTTGATGGGGACGTGATACAAGA
TCAGGTAATAGAGCTTATTAGTCAGTATGGGTATGAAGGGGACGTTATATTGGGAATGAAGGTAC
GTGATCAGTCAGTGAATGATGGGAACACTTTTCTTGGGAGATGGGGCAGTTGTCTGTGGTAGGCT
ATCCCGGAAGATGTGTCAGTTTTGAAGCTTGCATTATATACGTCATTATACAACAATGGGCTCAG
TCACTTTTCAAAACAGGTGCATCGTGATAAATATCGTGCATCGGTTCCAAAACATCCAAGAAAGC
ATCGACACCTGAAATCGAGTGCATTGACAAGCGGCATTGACTTCTGGGGTCACCTCTATCGGAAG
ATGTGGCAGTTGTTTTTGGAGTTTGGAGTTTGGAGTAGGGGAGTG
Found at i:677880 original size:19 final size:19
Alignment explanation
Indices: 677849--677919 Score: 97
Period size: 19 Copynumber: 3.7 Consensus size: 19
677839 TTATTCGGGT
*
677849 TAGGCAAGAATACACCACG
1 TAGGCAAGAATACACTACG
* * *
677868 TAGGCGAGGATACACTATG
1 TAGGCAAGAATACACTACG
*
677887 TAGGTAAGAATACACTACG
1 TAGGCAAGAATACACTACG
677906 TAGGCAAGAATACA
1 TAGGCAAGAATACA
677920 TCGAGTCGAG
Statistics
Matches: 43, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
19 43 1.00
ACGTcount: A:0.41, C:0.18, G:0.24, T:0.17
Consensus pattern (19 bp):
TAGGCAAGAATACACTACG
Left flanking sequence: Indices 677349 -- 677848
GTGCATCGGTTCCAAAACATCCAAGAAAGCATCGACACCTGAAATCGAGTGCATTGACAAGCGGC
ATTGACTTCTGGGGTCACCTCTATCGGAAGATGTGGCAGTTGTTTTTGGAGTTTGGAGTTTGGAG
TAGGGGAGTGTGGAGTTGTAGGTTGGGGTAGGGCCTTTGAGAGGGAATGAGGATTTCTAAGAGGA
TAGTGAACCCGGTGTTAAGGAGAGGTTGGGTGCTTTTACCGCGAGATTCATCCCTAGTCACCAAC
TCTATCCCTCCTCTAGTGTAGTGGACTTCACATCCCGAATTAAGACCTTGGGGGGAATTGGATAG
TTTATGAATCATACTATAAGTAGTATCGAAACCGGATCTAGTGGCTACCATCCGGATTCCACCTT
ATATTCTCACTAGAGAAACCCGAATCCAGACCATTGGCTTACACCTTGGACCCTACGTTACACTT
ACTGGGCGAAGACCCCGGACCAAAACCCTTGGCCATTATTCGGGT
Right flanking sequence: Indices 677920 -- 678419
TCGAGTCGAGATGTGCTTGCTATCACTTCGATTATACGAATACATCGTGGAGGCAGGGCCACACA
TTTGGTCGGGGCGTGTCGGCCTTTCTCCTGGGTGGGAAAGAATACATTATGTAAGTGAATACGTG
TATAGGAAACTCTCCCTATTCACAGTGGGGTATTCTTAAAACGCCCTACTATTATGAATTCCAGC
CCCCGTATATTATTTCAAGGGCGCCCTTGCCCCTCCTATTTCTTCTCTGGCGGCTTCGCACCTTA
ATAATAGTGGGGTTGGAGATAGAGATAGAGAGCACTCGACTTGTTAGATGACTCTACCTTTATGC
TGGAACCGGGAGAGAGCGGAGGGTTTGATTCACTCGACTGCAGATGACTCGATCTTAAACTCGAC
CGATCACTCGAATTACCTGTTGATCATTCGACCTTCATGCCATGCCACCTGTTGAAATGCACTCA
CTTTGAATCAGGCGCCTATCATACAGAAACCATATCTGATATTGA
Found at i:678748 original size:24 final size:24
Alignment explanation
Indices: 678716--678762 Score: 94
Period size: 24 Copynumber: 2.0 Consensus size: 24
678706 AGAGAGGATG
678716 GGTGGGATTGGTATGAGAGAGAGA
1 GGTGGGATTGGTATGAGAGAGAGA
678740 GGTGGGATTGGTATGAGAGAGAG
1 GGTGGGATTGGTATGAGAGAGAG
678763 TTCGTTTAGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.28, C:0.00, G:0.51, T:0.21
Consensus pattern (24 bp):
GGTGGGATTGGTATGAGAGAGAGA
Left flanking sequence: Indices 678216 -- 678715
CGACTTGTTAGATGACTCTACCTTTATGCTGGAACCGGGAGAGAGCGGAGGGTTTGATTCACTCG
ACTGCAGATGACTCGATCTTAAACTCGACCGATCACTCGAATTACCTGTTGATCATTCGACCTTC
ATGCCATGCCACCTGTTGAAATGCACTCACTTTGAATCAGGCGCCTATCATACAGAAACCATATC
TGATATTGATGCAAGGGGGATAACATTCTTGGCAAAACCACCCCCATCCACCTACTGATTGACCT
TGGATTCTTGGTTGGATCATGAATCTCAGCCCGCTTCTACGATGTAACAAGAACCTCCTTAGACG
TTACTTACAACCTGAAGATACTAATACATAATCAATTACAACCATTACTCTGGTGAGATAAGCAC
TTGGTCAGCTTATTCATATTCATTATGTAGAACACATGTACCCGCGTGTGTTAGTAGTGGTGGGA
TGGGAGTGGTGTGTGCTTCTGTAATCAGTTAAGAGAGAGAGGATG
Right flanking sequence: Indices 678763 -- 679262
TTCGTTTAGTGGAGAGAGGTGTTGAAGATAGCTTGGCTTTGGAGACAGGCGGGATAGAAGCTAGG
CACGAAGACGCAAGCTTGAGCGAGCTTTCTCCTTGTTGAGTTTGCTAGCTCAGGTTCTCTGGTTC
AGGTGAGATGATACGAGATTGTTTCTCAATGTGTCCAAGGCCATTAAGATTGCTGTGCGCTTGAC
CCCATTCAGATTGGGGCTTCTGGGATCAGTGCCTTTCTCATGTGCCTTGACGAGAGAGACAACCA
ACCCTTTCGATTCAGTGCCCGACCAGAACCATCCGTTTAGGCTGGCCTTAGTGTGTCTGCTGGTT
AGATTGCCTTGGCTTATCTGCCTTTCCCAGTATATAAAAAAAAGATTCGTTTGGGTTGTACCGTG
AAAGAAGTGTCCAATATAGATTCGGTGGTAAGGTCCCGTATTCACATTGCCCAGTGATAAGTAGA
TCAATATGTATGTGGATAGTGGAACCAATGTGATATGGGGGCACG
Found at i:680693 original size:27 final size:27
Alignment explanation
Indices: 680656--680714 Score: 118
Period size: 27 Copynumber: 2.2 Consensus size: 27
680646 TAGTGAGTGA
680656 CCCCTCTCCTCTCCTTATCAGTCGAGC
1 CCCCTCTCCTCTCCTTATCAGTCGAGC
680683 CCCCTCTCCTCTCCTTATCAGTCGAGC
1 CCCCTCTCCTCTCCTTATCAGTCGAGC
680710 CCCCT
1 CCCCT
680715 AAAGGGTCCT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.10, C:0.51, G:0.10, T:0.29
Consensus pattern (27 bp):
CCCCTCTCCTCTCCTTATCAGTCGAGC
Left flanking sequence: Indices 680156 -- 680655
AGATAAGGTGAGAAAGATCTCCCTCAAATTGAAAAGGGAAGGGAAGTGGAAGATAAGATGAGATA
TACCTCCATAAGAAGATGACAAGAAATATAGACCCTTAACGTGCGTGTCAGATAAATAGACTCCA
CAAGATATCTGTGCAGAGGCTCGGCTTAAATACGAACCATGCCTTAGATACGAAATACTAAAGCC
TTACACGCACGATGAGGACATCTTCACTTAGGGGCCTACAACGAAGCATTAGACAGGGGCCTAGA
GGCAAAGGGGTAACCAAAGCATAAGAAAGGGCTGTTCCCTGCGAAGGAAGCATTAGAAAAGGCCA
TAGAACAAACTTAGAACCTGGGAGCTGACCTTTTGAGCAGTCTAATCATCTTATTACAGTCTTAC
AACCTGCAGTCTTACTACCTTAGGAAGAGTATGCCGATACTCTGATCATGCTAAGAAGATTAGGA
TCTTGAGTTCAGTCCAATAACCCTCACCATATGAATAGTGAGTGA
Right flanking sequence: Indices 680715 -- 681214
AAAGGGTCCTTATTAGTCGAGCGTGCTTACGCACCCTAAAGGGTCCTTGACAGTCGAGCCCCTAC
CGGTCCTCACCATATGAATAGTGAGTGGCTCCGCCCCTGATCAGTCGAGCCCCCTAAAGGGTCCT
TATTAGTCGAGCGTGCTTACGCACCCTAAAGGGTCCTTGACAGTCGAGCCCCTACCGGTCCTCAC
CATATGAATAGTGAGTGGCCCCTAAGTAAGAAATATAGGGTGAGGTAACGAACGCTCGACCCCCG
GGAGAGGGCCCTTGAGCTTTCACATGAGGATTATGATTAGGCTCCTTACTGAAGGCAGTCTTACA
GGTGTATGATTAGTCTTCATACTTTCTTACAATCACACTCACAACCCTTGAGCTTCATTATGCTT
ACTTGATGACGGGAAAGAAGAAGGATGACGGGAAAGAAGAAGGAACCACACTCAGCCGGAGAGGA
CACCGAAACCCCCTTTGAACCATATGAGCCATCAGTCCAACAAAC
Found at i:680724 original size:27 final size:27
Alignment explanation
Indices: 680666--680736 Score: 79
Period size: 27 Copynumber: 2.6 Consensus size: 27
680656 CCCCTCTCCT
*** *
680666 CTCCTTATCAGTCGAGCCCCCTCTCCT
1 CTCCTTATCAGTCGAGCCCCCTAAACG
*
680693 CTCCTTATCAGTCGAGCCCCCTAAAGG
1 CTCCTTATCAGTCGAGCCCCCTAAACG
* *
680720 GTCCTTATTAGTCGAGC
1 CTCCTTATCAGTCGAGC
680737 GTGCTTACGC
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 37 1.00
ACGTcount: A:0.17, C:0.38, G:0.17, T:0.28
Consensus pattern (27 bp):
CTCCTTATCAGTCGAGCCCCCTAAACG
Left flanking sequence: Indices 680166 -- 680665
AGAAAGATCTCCCTCAAATTGAAAAGGGAAGGGAAGTGGAAGATAAGATGAGATATACCTCCATA
AGAAGATGACAAGAAATATAGACCCTTAACGTGCGTGTCAGATAAATAGACTCCACAAGATATCT
GTGCAGAGGCTCGGCTTAAATACGAACCATGCCTTAGATACGAAATACTAAAGCCTTACACGCAC
GATGAGGACATCTTCACTTAGGGGCCTACAACGAAGCATTAGACAGGGGCCTAGAGGCAAAGGGG
TAACCAAAGCATAAGAAAGGGCTGTTCCCTGCGAAGGAAGCATTAGAAAAGGCCATAGAACAAAC
TTAGAACCTGGGAGCTGACCTTTTGAGCAGTCTAATCATCTTATTACAGTCTTACAACCTGCAGT
CTTACTACCTTAGGAAGAGTATGCCGATACTCTGATCATGCTAAGAAGATTAGGATCTTGAGTTC
AGTCCAATAACCCTCACCATATGAATAGTGAGTGACCCCTCTCCT
Right flanking sequence: Indices 680737 -- 681236
GTGCTTACGCACCCTAAAGGGTCCTTGACAGTCGAGCCCCTACCGGTCCTCACCATATGAATAGT
GAGTGGCTCCGCCCCTGATCAGTCGAGCCCCCTAAAGGGTCCTTATTAGTCGAGCGTGCTTACGC
ACCCTAAAGGGTCCTTGACAGTCGAGCCCCTACCGGTCCTCACCATATGAATAGTGAGTGGCCCC
TAAGTAAGAAATATAGGGTGAGGTAACGAACGCTCGACCCCCGGGAGAGGGCCCTTGAGCTTTCA
CATGAGGATTATGATTAGGCTCCTTACTGAAGGCAGTCTTACAGGTGTATGATTAGTCTTCATAC
TTTCTTACAATCACACTCACAACCCTTGAGCTTCATTATGCTTACTTGATGACGGGAAAGAAGAA
GGATGACGGGAAAGAAGAAGGAACCACACTCAGCCGGAGAGGACACCGAAACCCCCTTTGAACCA
TATGAGCCATCAGTCCAACAAACCACCTTGAAGACGAGGATGAGG
Found at i:680847 original size:120 final size:120
Alignment explanation
Indices: 680699--680928 Score: 460
Period size: 120 Copynumber: 1.9 Consensus size: 120
680689 TCCTCTCCTT
680699 ATCAGTCGAGCCCCCTAAAGGGTCCTTATTAGTCGAGCGTGCTTACGCACCCTAAAGGGTCCTTG
1 ATCAGTCGAGCCCCCTAAAGGGTCCTTATTAGTCGAGCGTGCTTACGCACCCTAAAGGGTCCTTG
680764 ACAGTCGAGCCCCTACCGGTCCTCACCATATGAATAGTGAGTGGCTCCGCCCCTG
66 ACAGTCGAGCCCCTACCGGTCCTCACCATATGAATAGTGAGTGGCTCCGCCCCTG
680819 ATCAGTCGAGCCCCCTAAAGGGTCCTTATTAGTCGAGCGTGCTTACGCACCCTAAAGGGTCCTTG
1 ATCAGTCGAGCCCCCTAAAGGGTCCTTATTAGTCGAGCGTGCTTACGCACCCTAAAGGGTCCTTG
680884 ACAGTCGAGCCCCTACCGGTCCTCACCATATGAATAGTGAGTGGC
66 ACAGTCGAGCCCCTACCGGTCCTCACCATATGAATAGTGAGTGGC
680929 CCCTAAGTAA
Statistics
Matches: 110, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
120 110 1.00
ACGTcount: A:0.22, C:0.31, G:0.24, T:0.23
Consensus pattern (120 bp):
ATCAGTCGAGCCCCCTAAAGGGTCCTTATTAGTCGAGCGTGCTTACGCACCCTAAAGGGTCCTTG
ACAGTCGAGCCCCTACCGGTCCTCACCATATGAATAGTGAGTGGCTCCGCCCCTG
Left flanking sequence: Indices 680199 -- 680698
AAGTGGAAGATAAGATGAGATATACCTCCATAAGAAGATGACAAGAAATATAGACCCTTAACGTG
CGTGTCAGATAAATAGACTCCACAAGATATCTGTGCAGAGGCTCGGCTTAAATACGAACCATGCC
TTAGATACGAAATACTAAAGCCTTACACGCACGATGAGGACATCTTCACTTAGGGGCCTACAACG
AAGCATTAGACAGGGGCCTAGAGGCAAAGGGGTAACCAAAGCATAAGAAAGGGCTGTTCCCTGCG
AAGGAAGCATTAGAAAAGGCCATAGAACAAACTTAGAACCTGGGAGCTGACCTTTTGAGCAGTCT
AATCATCTTATTACAGTCTTACAACCTGCAGTCTTACTACCTTAGGAAGAGTATGCCGATACTCT
GATCATGCTAAGAAGATTAGGATCTTGAGTTCAGTCCAATAACCCTCACCATATGAATAGTGAGT
GACCCCTCTCCTCTCCTTATCAGTCGAGCCCCCTCTCCTCTCCTT
Right flanking sequence: Indices 680929 -- 681428
CCCTAAGTAAGAAATATAGGGTGAGGTAACGAACGCTCGACCCCCGGGAGAGGGCCCTTGAGCTT
TCACATGAGGATTATGATTAGGCTCCTTACTGAAGGCAGTCTTACAGGTGTATGATTAGTCTTCA
TACTTTCTTACAATCACACTCACAACCCTTGAGCTTCATTATGCTTACTTGATGACGGGAAAGAA
GAAGGATGACGGGAAAGAAGAAGGAACCACACTCAGCCGGAGAGGACACCGAAACCCCCTTTGAA
CCATATGAGCCATCAGTCCAACAAACCACCTTGAAGACGAGGATGAGGATTAGGTTTAGTCAAGC
CTTCCAAACTACACACTCTTGAGCTTGATTATGAATGTGCTGACCCTCTTACCTTTAGGGCACAA
CCTTAGAACAATGAAACCACCTGCTATGCTGATTAGGATTCACATTCACACCTAGACTTATGATT
ATGACCAGTACTCCTTCGATCTGCTAACCCTCTAACCAACAGGCT
Found at i:681133 original size:19 final size:19
Alignment explanation
Indices: 681109--681148 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
681099 ATGCTTACTT
681109 GATGACGGGAAAGAAGAAG
1 GATGACGGGAAAGAAGAAG
681128 GATGACGGGAAAGAAGAAG
1 GATGACGGGAAAGAAGAAG
681147 GA
1 GA
681149 ACCACACTCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.47, C:0.05, G:0.42, T:0.05
Consensus pattern (19 bp):
GATGACGGGAAAGAAGAAG
Left flanking sequence: Indices 680609 -- 681108
GATCTTGAGTTCAGTCCAATAACCCTCACCATATGAATAGTGAGTGACCCCTCTCCTCTCCTTAT
CAGTCGAGCCCCCTCTCCTCTCCTTATCAGTCGAGCCCCCTAAAGGGTCCTTATTAGTCGAGCGT
GCTTACGCACCCTAAAGGGTCCTTGACAGTCGAGCCCCTACCGGTCCTCACCATATGAATAGTGA
GTGGCTCCGCCCCTGATCAGTCGAGCCCCCTAAAGGGTCCTTATTAGTCGAGCGTGCTTACGCAC
CCTAAAGGGTCCTTGACAGTCGAGCCCCTACCGGTCCTCACCATATGAATAGTGAGTGGCCCCTA
AGTAAGAAATATAGGGTGAGGTAACGAACGCTCGACCCCCGGGAGAGGGCCCTTGAGCTTTCACA
TGAGGATTATGATTAGGCTCCTTACTGAAGGCAGTCTTACAGGTGTATGATTAGTCTTCATACTT
TCTTACAATCACACTCACAACCCTTGAGCTTCATTATGCTTACTT
Right flanking sequence: Indices 681149 -- 681648
ACCACACTCAGCCGGAGAGGACACCGAAACCCCCTTTGAACCATATGAGCCATCAGTCCAACAAA
CCACCTTGAAGACGAGGATGAGGATTAGGTTTAGTCAAGCCTTCCAAACTACACACTCTTGAGCT
TGATTATGAATGTGCTGACCCTCTTACCTTTAGGGCACAACCTTAGAACAATGAAACCACCTGCT
ATGCTGATTAGGATTCACATTCACACCTAGACTTATGATTATGACCAGTACTCCTTCGATCTGCT
AACCCTCTAACCAACAGGCTTTAGAACTTTGCTTACCTTCATAGCCCCTAATTCACCTTACTAGA
TACCTTATGACCTGACTAGTTGTGCTTAGGAGGTAGATACTGACTTCAACCTGATTGACTTGCTT
AGCTTCCATGCTTTTGAGTAGGAGAGACAGAAGAACTAGGACTCACTTATAGACATTCTGATTCA
CTTATGATCTTGAAAGCCATCCAACCACCTGAGAGATGAGATCTT
Found at i:683364 original size:27 final size:27
Alignment explanation
Indices: 683347--683405 Score: 82
Period size: 27 Copynumber: 2.2 Consensus size: 27
683337 AGGACCCTTT
* *
683347 AGGGGGCTCGACTGATAAGGAGAGGAG
1 AGGGGGCTCGACTGATAAGGACACGAG
* *
683374 AGGGGGCTCGACTGATAAGGAGAGGAG
1 AGGGGGCTCGACTGATAAGGACACGAG
683401 AGGGG
1 AGGGG
683406 CGGAGCCACT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.29, C:0.10, G:0.51, T:0.10
Consensus pattern (27 bp):
AGGGGGCTCGACTGATAAGGACACGAG
Left flanking sequence: Indices 682847 -- 683346
TAGGTTTCATACATCTGCATTTTGTTAGTCTCCCATCCAAACACACATGATCATGAGGACACATT
AGAGGTGTATGTACGCCAACACACCTTGGATTAGGTTGGGGAATCTCCGGGCATTCCATCAAACA
AACCATGAGCTTGAGGTGAAGGGCTTTAGGAAAAGGAACAGACAAGGTCCGAAGGTCTTGCGCTT
CTGAGGGCAAGGGGAGCTTAATCTCGGATCATGCTGAAGATGAGGTATTGCTTGGTTCATGCTTG
GGGCTGGCTGAGGACTTGAGCTTGTGGGCCCTATATTCTTTAGGGGTCACTCACTATTCATATGG
TGAGGGTGCGTAAGCACACTCGACTGCCTTTGGTTACTTATTTGAGAGGAGGGGATAGGGCCCTT
ACTTCTTAGGGGCGGAGCCACTCACTATTCCGATGGTGAGGACCGGTAGGGGCTCGACTGTCAAG
GACCCTTTAGGGTGCGTAAGCACGCTCGACTAATAAGGACCCTTT
Right flanking sequence: Indices 683406 -- 683905
CGGAGCCACTCACTATTCATATGGTGAGGGGTCACTCACTATTCATATGGTGAGGGTGCGTAAGC
ACACTCGACTGTCCAGGAGAGGGTGCGTAAGCACACTCGACTGCCTTTGGTTACTTATTTGAGAG
GAGGGGAGAGGGTGCGTAAGCACACTCACTATTCATATGGTGAGGGTGCGTAAGCACACTCGACT
GCCTTTGGTTACTTATTTGAGAGGAGGGGAGAGGGTGCGTAAGCACACTCACTATTCATATGGTG
AGGGTGCGTAAGCACACTCGACTGTCCAGGAGAGGGTTTCTCTAGGAATACGGGAATCTTCATGC
TCAATTGAAGATCATGCTGAATGCTTGGTTGATGAGGGCTACTTCAGACAGGCTTATGCTTTTGG
CGTTAGATCTGAACACATGAGCTTTGAGGAAAGGAAGGGGTGATTCAGCATCTCCATCCAGGAGC
TTCTGGGGTGATATTATGGGTCATGAGCTTGATGCTTGAGCTGAA
Found at i:683448 original size:26 final size:26
Alignment explanation
Indices: 683412--683461 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
683402 GGGGCGGAGC
683412 CACTCACTATTCATATGGTGAGGGGT
1 CACTCACTATTCATATGGTGAGGGGT
683438 CACTCACTATTCATATGGTGAGGG
1 CACTCACTATTCATATGGTGAGGG
683462 TGCGTAAGCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.24, C:0.20, G:0.26, T:0.30
Consensus pattern (26 bp):
CACTCACTATTCATATGGTGAGGGGT
Left flanking sequence: Indices 682912 -- 683411
AGAGGTGTATGTACGCCAACACACCTTGGATTAGGTTGGGGAATCTCCGGGCATTCCATCAAACA
AACCATGAGCTTGAGGTGAAGGGCTTTAGGAAAAGGAACAGACAAGGTCCGAAGGTCTTGCGCTT
CTGAGGGCAAGGGGAGCTTAATCTCGGATCATGCTGAAGATGAGGTATTGCTTGGTTCATGCTTG
GGGCTGGCTGAGGACTTGAGCTTGTGGGCCCTATATTCTTTAGGGGTCACTCACTATTCATATGG
TGAGGGTGCGTAAGCACACTCGACTGCCTTTGGTTACTTATTTGAGAGGAGGGGATAGGGCCCTT
ACTTCTTAGGGGCGGAGCCACTCACTATTCCGATGGTGAGGACCGGTAGGGGCTCGACTGTCAAG
GACCCTTTAGGGTGCGTAAGCACGCTCGACTAATAAGGACCCTTTAGGGGGCTCGACTGATAAGG
AGAGGAGAGGGGGCTCGACTGATAAGGAGAGGAGAGGGGCGGAGC
Right flanking sequence: Indices 683462 -- 683961
TGCGTAAGCACACTCGACTGTCCAGGAGAGGGTGCGTAAGCACACTCGACTGCCTTTGGTTACTT
ATTTGAGAGGAGGGGAGAGGGTGCGTAAGCACACTCACTATTCATATGGTGAGGGTGCGTAAGCA
CACTCGACTGCCTTTGGTTACTTATTTGAGAGGAGGGGAGAGGGTGCGTAAGCACACTCACTATT
CATATGGTGAGGGTGCGTAAGCACACTCGACTGTCCAGGAGAGGGTTTCTCTAGGAATACGGGAA
TCTTCATGCTCAATTGAAGATCATGCTGAATGCTTGGTTGATGAGGGCTACTTCAGACAGGCTTA
TGCTTTTGGCGTTAGATCTGAACACATGAGCTTTGAGGAAAGGAAGGGGTGATTCAGCATCTCCA
TCCAGGAGCTTCTGGGGTGATATTATGGGTCATGAGCTTGATGCTTGAGCTGAAGGGTGATCTGT
TCATCCGGGGATCTGATTGATGAATGCTTGGTTCTGCTGCATCTG
Found at i:683604 original size:88 final size:88
Alignment explanation
Indices: 683457--683689 Score: 409
Period size: 88 Copynumber: 2.7 Consensus size: 88
683447 TTCATATGGT
* * *
683457 GAGGGTGCGTAAGCACACTCGACT-GTC-CA-GGAGAGGGTGCGTAAGCACACTCGACTGCCTTT
1 GAGGGTGCGTAAGCACACTC-ACTATTCATATGGTGAGGGTGCGTAAGCACACTCGACTGCCTTT
683519 GGTTACTTATTTGAGAGGAGGGGA
65 GGTTACTTATTTGAGAGGAGGGGA
683543 GAGGGTGCGTAAGCACACTCACTATTCATATGGTGAGGGTGCGTAAGCACACTCGACTGCCTTTG
1 GAGGGTGCGTAAGCACACTCACTATTCATATGGTGAGGGTGCGTAAGCACACTCGACTGCCTTTG
683608 GTTACTTATTTGAGAGGAGGGGA
66 GTTACTTATTTGAGAGGAGGGGA
683631 GAGGGTGCGTAAGCACACTCACTATTCATATGGTGAGGGTGCGTAAGCACACTCGACTG
1 GAGGGTGCGTAAGCACACTCACTATTCATATGGTGAGGGTGCGTAAGCACACTCGACTG
683690 TCCAGGAGAG
Statistics
Matches: 141, Mismatches: 3, Indels: 4
0.95 0.02 0.03
Matches are distributed among these distances:
85 3 0.02
86 22 0.16
87 1 0.01
88 115 0.82
ACGTcount: A:0.24, C:0.20, G:0.33, T:0.24
Consensus pattern (88 bp):
GAGGGTGCGTAAGCACACTCACTATTCATATGGTGAGGGTGCGTAAGCACACTCGACTGCCTTTG
GTTACTTATTTGAGAGGAGGGGA
Left flanking sequence: Indices 682957 -- 683456
TCCGGGCATTCCATCAAACAAACCATGAGCTTGAGGTGAAGGGCTTTAGGAAAAGGAACAGACAA
GGTCCGAAGGTCTTGCGCTTCTGAGGGCAAGGGGAGCTTAATCTCGGATCATGCTGAAGATGAGG
TATTGCTTGGTTCATGCTTGGGGCTGGCTGAGGACTTGAGCTTGTGGGCCCTATATTCTTTAGGG
GTCACTCACTATTCATATGGTGAGGGTGCGTAAGCACACTCGACTGCCTTTGGTTACTTATTTGA
GAGGAGGGGATAGGGCCCTTACTTCTTAGGGGCGGAGCCACTCACTATTCCGATGGTGAGGACCG
GTAGGGGCTCGACTGTCAAGGACCCTTTAGGGTGCGTAAGCACGCTCGACTAATAAGGACCCTTT
AGGGGGCTCGACTGATAAGGAGAGGAGAGGGGGCTCGACTGATAAGGAGAGGAGAGGGGCGGAGC
CACTCACTATTCATATGGTGAGGGGTCACTCACTATTCATATGGT
Right flanking sequence: Indices 683690 -- 684189
TCCAGGAGAGGGTTTCTCTAGGAATACGGGAATCTTCATGCTCAATTGAAGATCATGCTGAATGC
TTGGTTGATGAGGGCTACTTCAGACAGGCTTATGCTTTTGGCGTTAGATCTGAACACATGAGCTT
TGAGGAAAGGAAGGGGTGATTCAGCATCTCCATCCAGGAGCTTCTGGGGTGATATTATGGGTCAT
GAGCTTGATGCTTGAGCTGAAGGGTGATCTGTTCATCCGGGGATCTGATTGATGAATGCTTGGTT
CTGCTGCATCTGGGTTTATCTCCATCTGGGTTCATGAGATATGCCTAGCGAATGAGACCAAGCTC
ATTCAATCCAGCCAAAAAGCATACTCTGCCAACTATCAATCAATCTTTACATCATTCAATCAAGG
AAAGGTACCAGAGGGTTCTCTATCAATCCAATCAGTCCATCCAGCCAGAAGGATGAATCTTTCTA
CCGGTGGGCATTCTTAGTTCCATCAAGCAAGCAGTCACTCATCAA
Found at i:684249 original size:54 final size:53
Alignment explanation
Indices: 684165--684276 Score: 140
Period size: 54 Copynumber: 2.1 Consensus size: 53
684155 TTCTTAGTTC
684165 CATCAAGCAAGCAGTCACTCATCAAATCAAGTGCCAAAGGTTACAGTTTGAGCT
1 CATCAAGCAAGCAGTCACTCATCAAATCAAGTGCCAAAGGTTACA-TTTGAGCT
* * * *
684219 CATCAAGCAAGCATTC-CATCATTC-ACTCAAGTGCCAAAGGTTCCATTTGATCT
1 CATCAAGCAAGCAGTCAC-TCA-TCAAATCAAGTGCCAAAGGTTACATTTGAGCT
684272 -ATCAA
1 CATCAA
684277 TCAGTCCATC
Statistics
Matches: 52, Mismatches: 4, Indels: 6
0.84 0.06 0.10
Matches are distributed among these distances:
52 5 0.10
53 8 0.15
54 37 0.71
55 2 0.04
ACGTcount: A:0.34, C:0.26, G:0.15, T:0.25
Consensus pattern (53 bp):
CATCAAGCAAGCAGTCACTCATCAAATCAAGTGCCAAAGGTTACATTTGAGCT
Left flanking sequence: Indices 683665 -- 684164
GAGGGTGCGTAAGCACACTCGACTGTCCAGGAGAGGGTTTCTCTAGGAATACGGGAATCTTCATG
CTCAATTGAAGATCATGCTGAATGCTTGGTTGATGAGGGCTACTTCAGACAGGCTTATGCTTTTG
GCGTTAGATCTGAACACATGAGCTTTGAGGAAAGGAAGGGGTGATTCAGCATCTCCATCCAGGAG
CTTCTGGGGTGATATTATGGGTCATGAGCTTGATGCTTGAGCTGAAGGGTGATCTGTTCATCCGG
GGATCTGATTGATGAATGCTTGGTTCTGCTGCATCTGGGTTTATCTCCATCTGGGTTCATGAGAT
ATGCCTAGCGAATGAGACCAAGCTCATTCAATCCAGCCAAAAAGCATACTCTGCCAACTATCAAT
CAATCTTTACATCATTCAATCAAGGAAAGGTACCAGAGGGTTCTCTATCAATCCAATCAGTCCAT
CCAGCCAGAAGGATGAATCTTTCTACCGGTGGGCATTCTTAGTTC
Right flanking sequence: Indices 684277 -- 684776
TCAGTCCATCCACCCAGAACGAATACTCTTTGCCAGTGGGAAATAGATTCTTATTTATAGCAAAC
CAGCATTCACTCATCAAATCCAGCAGGCAGACTCTGACAACTATCCATCCATCCTTTCTCCGCCG
CTCCTTTATTTGTTACTCCTCCTCCGGCAGTTCGTTTAGCTTAACTGCCCTGCTTATTCCCTCCC
GGGTGGGAAGGTAGAGCCTTTGTTCTATAGTTGTGAGAGTTAGTCACTTCTGGATAGCAGGCTAG
CCTACAGATGCAGTCTTAACCAGCTTGTTGAACAACTACTATGGAAGGGGAATTGTTAACTCGTA
ATGAAGAGGGTAGACCTTCCTCCATCAACTACTTTCTCTAGCTCCATCAACTACAACTGCCATCC
GCCCCCTGTTGAACTAAAGGAGGGGGGAGCTACCCTGGATCGGAGGATCATAGGACCATCCGGGG
GTGTAGATGAAACTAGAACGGGGGGTTCACTATCTTTCCCAACCG
Found at i:688973 original size:15 final size:15
Alignment explanation
Indices: 688953--688997 Score: 90
Period size: 15 Copynumber: 3.0 Consensus size: 15
688943 ATAAGGCAAG
688953 CATAATGACATCTAT
1 CATAATGACATCTAT
688968 CATAATGACATCTAT
1 CATAATGACATCTAT
688983 CATAATGACATCTAT
1 CATAATGACATCTAT
688998 AATAGCAGCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 30 1.00
ACGTcount: A:0.40, C:0.20, G:0.07, T:0.33
Consensus pattern (15 bp):
CATAATGACATCTAT
Left flanking sequence: Indices 688453 -- 688952
GAGAGCATCAGTGTACGGGCTTCATACAGCATAGCATTCACCAGCGTTCCATAACACCGCTTACT
GAATGAATCTGCTGGGTACCACGTATTACCCTATTGGTATGGCTGAGCTTTGCCGATACTTGGAA
TCAATTAGAACACACTGCAAGGAATAGACCTACCTGTCAGTTAATGCCTGCTACAATTGTGTTTT
TGAAAGACCCAGAATATTCTTCATGAAACACAATGTCTAAAAGGTTCAATTGACTTATTTTGTGC
CCCTCTCAAATAAGTAACTAGCTCATGGTCGAGCCTGCTTGCACACCTCCCCCTCTCGATGGCGG
CCCTTATGGTCGAGCCTGCTTGCGCACCCTTCGGTACCTTTGGTCGAGCCTGCTGTAGCATCCTT
ATGGTCGAGCGGCCTTACGGCACCTATATTTCTTCCCCTCAAAGAGCATAGCGAAGGGAAGGTTC
TTAAAGAAAGCGCTTTCAGTAACTAGAGAGAGATCATAAGGCAAG
Right flanking sequence: Indices 688998 -- 689497
AATAGCAGCATTTTCTGGTGTCATTTCGGCTATCGAGTCATGCCATAATGACATATATAATAGCA
ACATTCAGATTAGCACCTACTTACCTTCTCAGAGGGGAAGAAAGCCATTTGAGGGGAAAAAAGAG
AAGTACGGTCAAAAACATCCATCCTGTTGTGTCTATCTTTGCTAAAGCAATGTAATATATAATTC
ATGAATGCATAATGACATATATAATATATGCATTTTCTGGTGTAATTACTGCTATAATGAATGAC
GTAATTACGTATATAATTCATGATTGGAAGGCATGGCAGAGGTTCGCGAGATCGATCTAATTGCT
CGCGAAATGACATATATCGAGTCATGAATGGCTGCATTTTCGGCATTCGAAAGGTGCGAAGCCGC
TTGTTCTTCCGAGAACAAGGGCCCTTACTTCTTAGGGGCGGAGCCACTCACTATTCCGATGGTGA
GGACCGGTAGGGGCTCGACTGTCAAGGACCCTTTAGGGTGCGTAA
Found at i:689541 original size:27 final size:27
Alignment explanation
Indices: 689524--689582 Score: 82
Period size: 27 Copynumber: 2.2 Consensus size: 27
689514 AGGACCCTTT
* *
689524 AGGGGGCTCGACTGATAAGGAGAGGAG
1 AGGGGGCTCGACTGATAAGGACACGAG
* *
689551 AGGGGGCTCGACTGATAAGGAGAGGAG
1 AGGGGGCTCGACTGATAAGGACACGAG
689578 AGGGG
1 AGGGG
689583 CGGAGCCACT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.29, C:0.10, G:0.51, T:0.10
Consensus pattern (27 bp):
AGGGGGCTCGACTGATAAGGACACGAG
Left flanking sequence: Indices 689024 -- 689523
CGGCTATCGAGTCATGCCATAATGACATATATAATAGCAACATTCAGATTAGCACCTACTTACCT
TCTCAGAGGGGAAGAAAGCCATTTGAGGGGAAAAAAGAGAAGTACGGTCAAAAACATCCATCCTG
TTGTGTCTATCTTTGCTAAAGCAATGTAATATATAATTCATGAATGCATAATGACATATATAATA
TATGCATTTTCTGGTGTAATTACTGCTATAATGAATGACGTAATTACGTATATAATTCATGATTG
GAAGGCATGGCAGAGGTTCGCGAGATCGATCTAATTGCTCGCGAAATGACATATATCGAGTCATG
AATGGCTGCATTTTCGGCATTCGAAAGGTGCGAAGCCGCTTGTTCTTCCGAGAACAAGGGCCCTT
ACTTCTTAGGGGCGGAGCCACTCACTATTCCGATGGTGAGGACCGGTAGGGGCTCGACTGTCAAG
GACCCTTTAGGGTGCGTAAGCACGCTCGACTAATAAGGACCCTTT
Right flanking sequence: Indices 689583 -- 690082
CGGAGCCACTCACTATTCATATGGTGAGGGGTCACTCACTATTCATATGGTGAGGGTGCGTAAGC
ACGCTCGACTGCCTTTGGTTACTTATTTGAGAGGAGGGGAGAGGGCCCTTACTTCTTAGGGGCGG
AGCCACTCACTATTCCGATGGTGAGGACCGGTAGGGGCTCGACTGTCAAGGACCCTTTAGGGTGC
GTAAGCACGCTCGACTAATAAGGACCCTTTAGGGGGCTCGACTGATAAGGAGAGGAGAGGGGGCT
CGACTGATAAGGAGAGGAGAGGGGCGGAGCCACTCACTATTCATATGGTGAGGGGTCACTCACTA
TTCATATGGTGAGGGTGCGTAAGCACGCTCGACTGCCTTTGGTTACTTATTTGAGAGGAGGGGAG
AGGGCCCTTACTTCTTAGGGGCGGAGCCACTCACTATTCCGATGGTGAGGACCGGTAGGGGCTCG
ACTGTCAAGGACCCTTTAGGGTGCGTAAGCACGCTCGACTAATAA
Found at i:689625 original size:26 final size:26
Alignment explanation
Indices: 689589--689638 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
689579 GGGGCGGAGC
689589 CACTCACTATTCATATGGTGAGGGGT
1 CACTCACTATTCATATGGTGAGGGGT
689615 CACTCACTATTCATATGGTGAGGG
1 CACTCACTATTCATATGGTGAGGG
689639 TGCGTAAGCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.24, C:0.20, G:0.26, T:0.30
Consensus pattern (26 bp):
CACTCACTATTCATATGGTGAGGGGT
Left flanking sequence: Indices 689089 -- 689588
TCTCAGAGGGGAAGAAAGCCATTTGAGGGGAAAAAAGAGAAGTACGGTCAAAAACATCCATCCTG
TTGTGTCTATCTTTGCTAAAGCAATGTAATATATAATTCATGAATGCATAATGACATATATAATA
TATGCATTTTCTGGTGTAATTACTGCTATAATGAATGACGTAATTACGTATATAATTCATGATTG
GAAGGCATGGCAGAGGTTCGCGAGATCGATCTAATTGCTCGCGAAATGACATATATCGAGTCATG
AATGGCTGCATTTTCGGCATTCGAAAGGTGCGAAGCCGCTTGTTCTTCCGAGAACAAGGGCCCTT
ACTTCTTAGGGGCGGAGCCACTCACTATTCCGATGGTGAGGACCGGTAGGGGCTCGACTGTCAAG
GACCCTTTAGGGTGCGTAAGCACGCTCGACTAATAAGGACCCTTTAGGGGGCTCGACTGATAAGG
AGAGGAGAGGGGGCTCGACTGATAAGGAGAGGAGAGGGGCGGAGC
Right flanking sequence: Indices 689639 -- 690138
TGCGTAAGCACGCTCGACTGCCTTTGGTTACTTATTTGAGAGGAGGGGAGAGGGCCCTTACTTCT
TAGGGGCGGAGCCACTCACTATTCCGATGGTGAGGACCGGTAGGGGCTCGACTGTCAAGGACCCT
TTAGGGTGCGTAAGCACGCTCGACTAATAAGGACCCTTTAGGGGGCTCGACTGATAAGGAGAGGA
GAGGGGGCTCGACTGATAAGGAGAGGAGAGGGGCGGAGCCACTCACTATTCATATGGTGAGGGGT
CACTCACTATTCATATGGTGAGGGTGCGTAAGCACGCTCGACTGCCTTTGGTTACTTATTTGAGA
GGAGGGGAGAGGGCCCTTACTTCTTAGGGGCGGAGCCACTCACTATTCCGATGGTGAGGACCGGT
AGGGGCTCGACTGTCAAGGACCCTTTAGGGTGCGTAAGCACGCTCGACTAATAAGGACCCTTTAG
GGGGCTCGACTGATAAGGAGAGGAGAGGGGGCTCGACTGATAAGG
Found at i:689825 original size:27 final size:27
Alignment explanation
Indices: 689808--689866 Score: 82
Period size: 27 Copynumber: 2.2 Consensus size: 27
689798 AGGACCCTTT
* *
689808 AGGGGGCTCGACTGATAAGGAGAGGAG
1 AGGGGGCTCGACTGATAAGGACACGAG
* *
689835 AGGGGGCTCGACTGATAAGGAGAGGAG
1 AGGGGGCTCGACTGATAAGGACACGAG
689862 AGGGG
1 AGGGG
689867 CGGAGCCACT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.29, C:0.10, G:0.51, T:0.10
Consensus pattern (27 bp):
AGGGGGCTCGACTGATAAGGACACGAG
Left flanking sequence: Indices 689308 -- 689807
ATCGATCTAATTGCTCGCGAAATGACATATATCGAGTCATGAATGGCTGCATTTTCGGCATTCGA
AAGGTGCGAAGCCGCTTGTTCTTCCGAGAACAAGGGCCCTTACTTCTTAGGGGCGGAGCCACTCA
CTATTCCGATGGTGAGGACCGGTAGGGGCTCGACTGTCAAGGACCCTTTAGGGTGCGTAAGCACG
CTCGACTAATAAGGACCCTTTAGGGGGCTCGACTGATAAGGAGAGGAGAGGGGGCTCGACTGATA
AGGAGAGGAGAGGGGCGGAGCCACTCACTATTCATATGGTGAGGGGTCACTCACTATTCATATGG
TGAGGGTGCGTAAGCACGCTCGACTGCCTTTGGTTACTTATTTGAGAGGAGGGGAGAGGGCCCTT
ACTTCTTAGGGGCGGAGCCACTCACTATTCCGATGGTGAGGACCGGTAGGGGCTCGACTGTCAAG
GACCCTTTAGGGTGCGTAAGCACGCTCGACTAATAAGGACCCTTT
Right flanking sequence: Indices 689867 -- 690366
CGGAGCCACTCACTATTCATATGGTGAGGGGTCACTCACTATTCATATGGTGAGGGTGCGTAAGC
ACGCTCGACTGCCTTTGGTTACTTATTTGAGAGGAGGGGAGAGGGCCCTTACTTCTTAGGGGCGG
AGCCACTCACTATTCCGATGGTGAGGACCGGTAGGGGCTCGACTGTCAAGGACCCTTTAGGGTGC
GTAAGCACGCTCGACTAATAAGGACCCTTTAGGGGGCTCGACTGATAAGGAGAGGAGAGGGGGCT
CGACTGATAAGGAGAGGAGAGGGGCGGAGCCACTCACTATTCATATGGTGAGGGGTCACTCACTA
TTCATATGGTGAGGGTGCGTAAGCACGCTCGACTGCCTTTGGTTACTTATTTGAGAGGAGGGGAG
AGGGTGCGTTAGCACACTCACTATTCATATGGTGAGGGGTCACTCACTCATTCCGATGCCCACCA
CCCAATAAGCATCAAGGACCGGCAGGGGCTCGACCACCGCCTTTT
Found at i:689909 original size:26 final size:26
Alignment explanation
Indices: 689873--689922 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
689863 GGGGCGGAGC
689873 CACTCACTATTCATATGGTGAGGGGT
1 CACTCACTATTCATATGGTGAGGGGT
689899 CACTCACTATTCATATGGTGAGGG
1 CACTCACTATTCATATGGTGAGGG
689923 TGCGTAAGCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.24, C:0.20, G:0.26, T:0.30
Consensus pattern (26 bp):
CACTCACTATTCATATGGTGAGGGGT
Left flanking sequence: Indices 689373 -- 689872
AAGGTGCGAAGCCGCTTGTTCTTCCGAGAACAAGGGCCCTTACTTCTTAGGGGCGGAGCCACTCA
CTATTCCGATGGTGAGGACCGGTAGGGGCTCGACTGTCAAGGACCCTTTAGGGTGCGTAAGCACG
CTCGACTAATAAGGACCCTTTAGGGGGCTCGACTGATAAGGAGAGGAGAGGGGGCTCGACTGATA
AGGAGAGGAGAGGGGCGGAGCCACTCACTATTCATATGGTGAGGGGTCACTCACTATTCATATGG
TGAGGGTGCGTAAGCACGCTCGACTGCCTTTGGTTACTTATTTGAGAGGAGGGGAGAGGGCCCTT
ACTTCTTAGGGGCGGAGCCACTCACTATTCCGATGGTGAGGACCGGTAGGGGCTCGACTGTCAAG
GACCCTTTAGGGTGCGTAAGCACGCTCGACTAATAAGGACCCTTTAGGGGGCTCGACTGATAAGG
AGAGGAGAGGGGGCTCGACTGATAAGGAGAGGAGAGGGGCGGAGC
Right flanking sequence: Indices 689923 -- 690422
TGCGTAAGCACGCTCGACTGCCTTTGGTTACTTATTTGAGAGGAGGGGAGAGGGCCCTTACTTCT
TAGGGGCGGAGCCACTCACTATTCCGATGGTGAGGACCGGTAGGGGCTCGACTGTCAAGGACCCT
TTAGGGTGCGTAAGCACGCTCGACTAATAAGGACCCTTTAGGGGGCTCGACTGATAAGGAGAGGA
GAGGGGGCTCGACTGATAAGGAGAGGAGAGGGGCGGAGCCACTCACTATTCATATGGTGAGGGGT
CACTCACTATTCATATGGTGAGGGTGCGTAAGCACGCTCGACTGCCTTTGGTTACTTATTTGAGA
GGAGGGGAGAGGGTGCGTTAGCACACTCACTATTCATATGGTGAGGGGTCACTCACTCATTCCGA
TGCCCACCACCCAATAAGCATCAAGGACCGGCAGGGGCTCGACCACCGCCTTTTAGTTACTTATT
TGAGAGCCCAATAAGTCAATTTCAACTTGAGTTGCTCGACCACCG
Found at i:689915 original size:284 final size:284
Alignment explanation
Indices: 689405--690260 Score: 1712
Period size: 284 Copynumber: 3.0 Consensus size: 284
689395 TCCGAGAACA
689405 AGGGCCCTTACTTCTTAGGGGCGGAGCCACTCACTATTCCGATGGTGAGGACCGGTAGGGGCTCG
1 AGGGCCCTTACTTCTTAGGGGCGGAGCCACTCACTATTCCGATGGTGAGGACCGGTAGGGGCTCG
689470 ACTGTCAAGGACCCTTTAGGGTGCGTAAGCACGCTCGACTAATAAGGACCCTTTAGGGGGCTCGA
66 ACTGTCAAGGACCCTTTAGGGTGCGTAAGCACGCTCGACTAATAAGGACCCTTTAGGGGGCTCGA
689535 CTGATAAGGAGAGGAGAGGGGGCTCGACTGATAAGGAGAGGAGAGGGGCGGAGCCACTCACTATT
131 CTGATAAGGAGAGGAGAGGGGGCTCGACTGATAAGGAGAGGAGAGGGGCGGAGCCACTCACTATT
689600 CATATGGTGAGGGGTCACTCACTATTCATATGGTGAGGGTGCGTAAGCACGCTCGACTGCCTTTG
196 CATATGGTGAGGGGTCACTCACTATTCATATGGTGAGGGTGCGTAAGCACGCTCGACTGCCTTTG
689665 GTTACTTATTTGAGAGGAGGGGAG
261 GTTACTTATTTGAGAGGAGGGGAG
689689 AGGGCCCTTACTTCTTAGGGGCGGAGCCACTCACTATTCCGATGGTGAGGACCGGTAGGGGCTCG
1 AGGGCCCTTACTTCTTAGGGGCGGAGCCACTCACTATTCCGATGGTGAGGACCGGTAGGGGCTCG
689754 ACTGTCAAGGACCCTTTAGGGTGCGTAAGCACGCTCGACTAATAAGGACCCTTTAGGGGGCTCGA
66 ACTGTCAAGGACCCTTTAGGGTGCGTAAGCACGCTCGACTAATAAGGACCCTTTAGGGGGCTCGA
689819 CTGATAAGGAGAGGAGAGGGGGCTCGACTGATAAGGAGAGGAGAGGGGCGGAGCCACTCACTATT
131 CTGATAAGGAGAGGAGAGGGGGCTCGACTGATAAGGAGAGGAGAGGGGCGGAGCCACTCACTATT
689884 CATATGGTGAGGGGTCACTCACTATTCATATGGTGAGGGTGCGTAAGCACGCTCGACTGCCTTTG
196 CATATGGTGAGGGGTCACTCACTATTCATATGGTGAGGGTGCGTAAGCACGCTCGACTGCCTTTG
689949 GTTACTTATTTGAGAGGAGGGGAG
261 GTTACTTATTTGAGAGGAGGGGAG
689973 AGGGCCCTTACTTCTTAGGGGCGGAGCCACTCACTATTCCGATGGTGAGGACCGGTAGGGGCTCG
1 AGGGCCCTTACTTCTTAGGGGCGGAGCCACTCACTATTCCGATGGTGAGGACCGGTAGGGGCTCG
690038 ACTGTCAAGGACCCTTTAGGGTGCGTAAGCACGCTCGACTAATAAGGACCCTTTAGGGGGCTCGA
66 ACTGTCAAGGACCCTTTAGGGTGCGTAAGCACGCTCGACTAATAAGGACCCTTTAGGGGGCTCGA
690103 CTGATAAGGAGAGGAGAGGGGGCTCGACTGATAAGGAGAGGAGAGGGGCGGAGCCACTCACTATT
131 CTGATAAGGAGAGGAGAGGGGGCTCGACTGATAAGGAGAGGAGAGGGGCGGAGCCACTCACTATT
690168 CATATGGTGAGGGGTCACTCACTATTCATATGGTGAGGGTGCGTAAGCACGCTCGACTGCCTTTG
196 CATATGGTGAGGGGTCACTCACTATTCATATGGTGAGGGTGCGTAAGCACGCTCGACTGCCTTTG
690233 GTTACTTATTTGAGAGGAGGGGAG
261 GTTACTTATTTGAGAGGAGGGGAG
690257 AGGG
1 AGGG
690261 TGCGTTAGCA
Statistics
Matches: 572, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
284 572 1.00
ACGTcount: A:0.23, C:0.20, G:0.35, T:0.22
Consensus pattern (284 bp):
AGGGCCCTTACTTCTTAGGGGCGGAGCCACTCACTATTCCGATGGTGAGGACCGGTAGGGGCTCG
ACTGTCAAGGACCCTTTAGGGTGCGTAAGCACGCTCGACTAATAAGGACCCTTTAGGGGGCTCGA
CTGATAAGGAGAGGAGAGGGGGCTCGACTGATAAGGAGAGGAGAGGGGCGGAGCCACTCACTATT
CATATGGTGAGGGGTCACTCACTATTCATATGGTGAGGGTGCGTAAGCACGCTCGACTGCCTTTG
GTTACTTATTTGAGAGGAGGGGAG
Left flanking sequence: Indices 688905 -- 689404
TTCTTAAAGAAAGCGCTTTCAGTAACTAGAGAGAGATCATAAGGCAAGCATAATGACATCTATCA
TAATGACATCTATCATAATGACATCTATAATAGCAGCATTTTCTGGTGTCATTTCGGCTATCGAG
TCATGCCATAATGACATATATAATAGCAACATTCAGATTAGCACCTACTTACCTTCTCAGAGGGG
AAGAAAGCCATTTGAGGGGAAAAAAGAGAAGTACGGTCAAAAACATCCATCCTGTTGTGTCTATC
TTTGCTAAAGCAATGTAATATATAATTCATGAATGCATAATGACATATATAATATATGCATTTTC
TGGTGTAATTACTGCTATAATGAATGACGTAATTACGTATATAATTCATGATTGGAAGGCATGGC
AGAGGTTCGCGAGATCGATCTAATTGCTCGCGAAATGACATATATCGAGTCATGAATGGCTGCAT
TTTCGGCATTCGAAAGGTGCGAAGCCGCTTGTTCTTCCGAGAACA
Right flanking sequence: Indices 690261 -- 690760
TGCGTTAGCACACTCACTATTCATATGGTGAGGGGTCACTCACTCATTCCGATGCCCACCACCCA
ATAAGCATCAAGGACCGGCAGGGGCTCGACCACCGCCTTTTAGTTACTTATTTGAGAGCCCAATA
AGTCAATTTCAACTTGAGTTGCTCGACCACCGGGCCGCCATCACCGGCAGGGTGCGTAAGCACAC
TCGACTGCCCTTGCCCCCGGAGGGACAAGCGGCTTCGCACCTTAGTTACTTATTTGAGAGGGGGG
CCGCCATCGCCCCTACTACTTTATAGGGCCCTATATTCTTTAGGGGCGGAGCCACTCACTATTCC
GATGGTGAGGACCGGTAGGGGCTCGACTGTCAAGGACCCTTTAGGGTGCGTAAGCACGCTCGACT
AATAAGGACCCTTTAGGGGGCTCGACTGATAAGGAGAGGAGAGGGGGCTCGACTGATAAGGAGAG
GAGAGGGGCGGAGCCACTCACTATTCATATGGTGAGGGGTCACTC
Found at i:690109 original size:27 final size:27
Alignment explanation
Indices: 690092--690150 Score: 82
Period size: 27 Copynumber: 2.2 Consensus size: 27
690082 AGGACCCTTT
* *
690092 AGGGGGCTCGACTGATAAGGAGAGGAG
1 AGGGGGCTCGACTGATAAGGACACGAG
* *
690119 AGGGGGCTCGACTGATAAGGAGAGGAG
1 AGGGGGCTCGACTGATAAGGACACGAG
690146 AGGGG
1 AGGGG
690151 CGGAGCCACT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.29, C:0.10, G:0.51, T:0.10
Consensus pattern (27 bp):
AGGGGGCTCGACTGATAAGGACACGAG
Left flanking sequence: Indices 689592 -- 690091
TCACTATTCATATGGTGAGGGGTCACTCACTATTCATATGGTGAGGGTGCGTAAGCACGCTCGAC
TGCCTTTGGTTACTTATTTGAGAGGAGGGGAGAGGGCCCTTACTTCTTAGGGGCGGAGCCACTCA
CTATTCCGATGGTGAGGACCGGTAGGGGCTCGACTGTCAAGGACCCTTTAGGGTGCGTAAGCACG
CTCGACTAATAAGGACCCTTTAGGGGGCTCGACTGATAAGGAGAGGAGAGGGGGCTCGACTGATA
AGGAGAGGAGAGGGGCGGAGCCACTCACTATTCATATGGTGAGGGGTCACTCACTATTCATATGG
TGAGGGTGCGTAAGCACGCTCGACTGCCTTTGGTTACTTATTTGAGAGGAGGGGAGAGGGCCCTT
ACTTCTTAGGGGCGGAGCCACTCACTATTCCGATGGTGAGGACCGGTAGGGGCTCGACTGTCAAG
GACCCTTTAGGGTGCGTAAGCACGCTCGACTAATAAGGACCCTTT
Right flanking sequence: Indices 690151 -- 690650
CGGAGCCACTCACTATTCATATGGTGAGGGGTCACTCACTATTCATATGGTGAGGGTGCGTAAGC
ACGCTCGACTGCCTTTGGTTACTTATTTGAGAGGAGGGGAGAGGGTGCGTTAGCACACTCACTAT
TCATATGGTGAGGGGTCACTCACTCATTCCGATGCCCACCACCCAATAAGCATCAAGGACCGGCA
GGGGCTCGACCACCGCCTTTTAGTTACTTATTTGAGAGCCCAATAAGTCAATTTCAACTTGAGTT
GCTCGACCACCGGGCCGCCATCACCGGCAGGGTGCGTAAGCACACTCGACTGCCCTTGCCCCCGG
AGGGACAAGCGGCTTCGCACCTTAGTTACTTATTTGAGAGGGGGGCCGCCATCGCCCCTACTACT
TTATAGGGCCCTATATTCTTTAGGGGCGGAGCCACTCACTATTCCGATGGTGAGGACCGGTAGGG
GCTCGACTGTCAAGGACCCTTTAGGGTGCGTAAGCACGCTCGACT
Found at i:690193 original size:26 final size:26
Alignment explanation
Indices: 690157--690206 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
690147 GGGGCGGAGC
690157 CACTCACTATTCATATGGTGAGGGGT
1 CACTCACTATTCATATGGTGAGGGGT
690183 CACTCACTATTCATATGGTGAGGG
1 CACTCACTATTCATATGGTGAGGG
690207 TGCGTAAGCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.24, C:0.20, G:0.26, T:0.30
Consensus pattern (26 bp):
CACTCACTATTCATATGGTGAGGGGT
Left flanking sequence: Indices 689657 -- 690156
TGCCTTTGGTTACTTATTTGAGAGGAGGGGAGAGGGCCCTTACTTCTTAGGGGCGGAGCCACTCA
CTATTCCGATGGTGAGGACCGGTAGGGGCTCGACTGTCAAGGACCCTTTAGGGTGCGTAAGCACG
CTCGACTAATAAGGACCCTTTAGGGGGCTCGACTGATAAGGAGAGGAGAGGGGGCTCGACTGATA
AGGAGAGGAGAGGGGCGGAGCCACTCACTATTCATATGGTGAGGGGTCACTCACTATTCATATGG
TGAGGGTGCGTAAGCACGCTCGACTGCCTTTGGTTACTTATTTGAGAGGAGGGGAGAGGGCCCTT
ACTTCTTAGGGGCGGAGCCACTCACTATTCCGATGGTGAGGACCGGTAGGGGCTCGACTGTCAAG
GACCCTTTAGGGTGCGTAAGCACGCTCGACTAATAAGGACCCTTTAGGGGGCTCGACTGATAAGG
AGAGGAGAGGGGGCTCGACTGATAAGGAGAGGAGAGGGGCGGAGC
Right flanking sequence: Indices 690207 -- 690706
TGCGTAAGCACGCTCGACTGCCTTTGGTTACTTATTTGAGAGGAGGGGAGAGGGTGCGTTAGCAC
ACTCACTATTCATATGGTGAGGGGTCACTCACTCATTCCGATGCCCACCACCCAATAAGCATCAA
GGACCGGCAGGGGCTCGACCACCGCCTTTTAGTTACTTATTTGAGAGCCCAATAAGTCAATTTCA
ACTTGAGTTGCTCGACCACCGGGCCGCCATCACCGGCAGGGTGCGTAAGCACACTCGACTGCCCT
TGCCCCCGGAGGGACAAGCGGCTTCGCACCTTAGTTACTTATTTGAGAGGGGGGCCGCCATCGCC
CCTACTACTTTATAGGGCCCTATATTCTTTAGGGGCGGAGCCACTCACTATTCCGATGGTGAGGA
CCGGTAGGGGCTCGACTGTCAAGGACCCTTTAGGGTGCGTAAGCACGCTCGACTAATAAGGACCC
TTTAGGGGGCTCGACTGATAAGGAGAGGAGAGGGGGCTCGACTGA
Found at i:690682 original size:27 final size:27
Alignment explanation
Indices: 690665--690723 Score: 82
Period size: 27 Copynumber: 2.2 Consensus size: 27
690655 AGGACCCTTT
* *
690665 AGGGGGCTCGACTGATAAGGAGAGGAG
1 AGGGGGCTCGACTGATAAGGACACGAG
* *
690692 AGGGGGCTCGACTGATAAGGAGAGGAG
1 AGGGGGCTCGACTGATAAGGACACGAG
690719 AGGGG
1 AGGGG
690724 CGGAGCCACT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.29, C:0.10, G:0.51, T:0.10
Consensus pattern (27 bp):
AGGGGGCTCGACTGATAAGGACACGAG
Left flanking sequence: Indices 690165 -- 690664
ATTCATATGGTGAGGGGTCACTCACTATTCATATGGTGAGGGTGCGTAAGCACGCTCGACTGCCT
TTGGTTACTTATTTGAGAGGAGGGGAGAGGGTGCGTTAGCACACTCACTATTCATATGGTGAGGG
GTCACTCACTCATTCCGATGCCCACCACCCAATAAGCATCAAGGACCGGCAGGGGCTCGACCACC
GCCTTTTAGTTACTTATTTGAGAGCCCAATAAGTCAATTTCAACTTGAGTTGCTCGACCACCGGG
CCGCCATCACCGGCAGGGTGCGTAAGCACACTCGACTGCCCTTGCCCCCGGAGGGACAAGCGGCT
TCGCACCTTAGTTACTTATTTGAGAGGGGGGCCGCCATCGCCCCTACTACTTTATAGGGCCCTAT
ATTCTTTAGGGGCGGAGCCACTCACTATTCCGATGGTGAGGACCGGTAGGGGCTCGACTGTCAAG
GACCCTTTAGGGTGCGTAAGCACGCTCGACTAATAAGGACCCTTT
Right flanking sequence: Indices 690724 -- 691223
CGGAGCCACTCACTATTCATATGGTGAGGGGTCACTCACTATTCATATGGTGAGGGTGCGTAAGC
ACACTCGACTGCCTTTGGTTACTTATTTGAGAGGAGGGGAGAGGGTGCGTTAGCACACTCACTAT
TCATATGGTGAGGGGTCACTCACTCATTCCGATGCCCACCACCCAATAAGCATCAAGGACCGGCA
GGGGCTCGACCACCGCCTTTTAGTTACTTATTTGAGAGCCCAATAAGTCAATTTCAACTTGAGTT
GCTCGACCACCGGGCCGCCATCACCGGCAGGGTGCGTAAGCACACTCGACTGCCCTTGCCCCCGG
AGGGACAAGCGGCTTCGCACCTTAGTTACTTATTTGAGAGGGGGGCCGCCATCGCCCCTACTACT
TTATAGGGCCCTATATTCTTTAGGGGCGGAGCCACTCACTATTCCGATGGTGAGGACCGGTAGGG
GCTCGACTGTCAAGGACCCTTTAGGGTGCGTAAGCACGCTCGACT
Found at i:690766 original size:26 final size:26
Alignment explanation
Indices: 690730--690779 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
690720 GGGGCGGAGC
690730 CACTCACTATTCATATGGTGAGGGGT
1 CACTCACTATTCATATGGTGAGGGGT
690756 CACTCACTATTCATATGGTGAGGG
1 CACTCACTATTCATATGGTGAGGG
690780 TGCGTAAGCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.24, C:0.20, G:0.26, T:0.30
Consensus pattern (26 bp):
CACTCACTATTCATATGGTGAGGGGT
Left flanking sequence: Indices 690230 -- 690729
TTGGTTACTTATTTGAGAGGAGGGGAGAGGGTGCGTTAGCACACTCACTATTCATATGGTGAGGG
GTCACTCACTCATTCCGATGCCCACCACCCAATAAGCATCAAGGACCGGCAGGGGCTCGACCACC
GCCTTTTAGTTACTTATTTGAGAGCCCAATAAGTCAATTTCAACTTGAGTTGCTCGACCACCGGG
CCGCCATCACCGGCAGGGTGCGTAAGCACACTCGACTGCCCTTGCCCCCGGAGGGACAAGCGGCT
TCGCACCTTAGTTACTTATTTGAGAGGGGGGCCGCCATCGCCCCTACTACTTTATAGGGCCCTAT
ATTCTTTAGGGGCGGAGCCACTCACTATTCCGATGGTGAGGACCGGTAGGGGCTCGACTGTCAAG
GACCCTTTAGGGTGCGTAAGCACGCTCGACTAATAAGGACCCTTTAGGGGGCTCGACTGATAAGG
AGAGGAGAGGGGGCTCGACTGATAAGGAGAGGAGAGGGGCGGAGC
Right flanking sequence: Indices 690780 -- 691279
TGCGTAAGCACACTCGACTGCCTTTGGTTACTTATTTGAGAGGAGGGGAGAGGGTGCGTTAGCAC
ACTCACTATTCATATGGTGAGGGGTCACTCACTCATTCCGATGCCCACCACCCAATAAGCATCAA
GGACCGGCAGGGGCTCGACCACCGCCTTTTAGTTACTTATTTGAGAGCCCAATAAGTCAATTTCA
ACTTGAGTTGCTCGACCACCGGGCCGCCATCACCGGCAGGGTGCGTAAGCACACTCGACTGCCCT
TGCCCCCGGAGGGACAAGCGGCTTCGCACCTTAGTTACTTATTTGAGAGGGGGGCCGCCATCGCC
CCTACTACTTTATAGGGCCCTATATTCTTTAGGGGCGGAGCCACTCACTATTCCGATGGTGAGGA
CCGGTAGGGGCTCGACTGTCAAGGACCCTTTAGGGTGCGTAAGCACGCTCGACTAATAAGGACCC
TTTAGGGGGCTCGACTGATAAGGAGAGGAGAGGGGGCTCGACTGA
Found at i:691255 original size:27 final size:27
Alignment explanation
Indices: 691238--691296 Score: 82
Period size: 27 Copynumber: 2.2 Consensus size: 27
691228 AGGACCCTTT
* *
691238 AGGGGGCTCGACTGATAAGGAGAGGAG
1 AGGGGGCTCGACTGATAAGGACACGAG
* *
691265 AGGGGGCTCGACTGATAAGGAGAGGAG
1 AGGGGGCTCGACTGATAAGGACACGAG
691292 AGGGG
1 AGGGG
691297 CGGAGCCACT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.29, C:0.10, G:0.51, T:0.10
Consensus pattern (27 bp):
AGGGGGCTCGACTGATAAGGACACGAG
Left flanking sequence: Indices 690738 -- 691237
ATTCATATGGTGAGGGGTCACTCACTATTCATATGGTGAGGGTGCGTAAGCACACTCGACTGCCT
TTGGTTACTTATTTGAGAGGAGGGGAGAGGGTGCGTTAGCACACTCACTATTCATATGGTGAGGG
GTCACTCACTCATTCCGATGCCCACCACCCAATAAGCATCAAGGACCGGCAGGGGCTCGACCACC
GCCTTTTAGTTACTTATTTGAGAGCCCAATAAGTCAATTTCAACTTGAGTTGCTCGACCACCGGG
CCGCCATCACCGGCAGGGTGCGTAAGCACACTCGACTGCCCTTGCCCCCGGAGGGACAAGCGGCT
TCGCACCTTAGTTACTTATTTGAGAGGGGGGCCGCCATCGCCCCTACTACTTTATAGGGCCCTAT
ATTCTTTAGGGGCGGAGCCACTCACTATTCCGATGGTGAGGACCGGTAGGGGCTCGACTGTCAAG
GACCCTTTAGGGTGCGTAAGCACGCTCGACTAATAAGGACCCTTT
Right flanking sequence: Indices 691297 -- 691796
CGGAGCCACTCACTATTCATATGGTGAGGGGTCACTCACTATTCATATGGTGAGGGTGCGTAAGC
ACACTCGACTGCCTTTGGTTACTTATTTGAGAGGAGGGGAGAGGGTGCGTTAGCACACTCACTAT
TCATATGGTGAGGGGTCACTCACTCATTCCGATGGGTGAGGGGCTCGACTGATAAGGAGAGGTAC
GTTAGTGACTCGACCAGCGCTAGTTACTTATTTGAGAGCCCAATAAGTCAAATGAATACGTTAGT
GACTCGACTGATAAGGACCCTTTAGGGGGCTCGACTGATAAGGACCTTTAGGTGCTCGACCCAGG
GTTTACTTATTGGGTGGGGCAATAAGTCAACCCAAGAGGAGAGGTACGTTAGTGACTCGACCAGC
GCTAGTTACTTATTTGAGAGCCCAATAAGTCAAATTGAAACGAGAAGAACTAAAAGGCCGCCATC
GCTCGACTGTTAAGGAGAGGAACTTGAAGAACCACCGGGCCGCCA
Found at i:691339 original size:26 final size:26
Alignment explanation
Indices: 691303--691352 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
691293 GGGGCGGAGC
691303 CACTCACTATTCATATGGTGAGGGGT
1 CACTCACTATTCATATGGTGAGGGGT
691329 CACTCACTATTCATATGGTGAGGG
1 CACTCACTATTCATATGGTGAGGG
691353 TGCGTAAGCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.24, C:0.20, G:0.26, T:0.30
Consensus pattern (26 bp):
CACTCACTATTCATATGGTGAGGGGT
Left flanking sequence: Indices 690803 -- 691302
TTGGTTACTTATTTGAGAGGAGGGGAGAGGGTGCGTTAGCACACTCACTATTCATATGGTGAGGG
GTCACTCACTCATTCCGATGCCCACCACCCAATAAGCATCAAGGACCGGCAGGGGCTCGACCACC
GCCTTTTAGTTACTTATTTGAGAGCCCAATAAGTCAATTTCAACTTGAGTTGCTCGACCACCGGG
CCGCCATCACCGGCAGGGTGCGTAAGCACACTCGACTGCCCTTGCCCCCGGAGGGACAAGCGGCT
TCGCACCTTAGTTACTTATTTGAGAGGGGGGCCGCCATCGCCCCTACTACTTTATAGGGCCCTAT
ATTCTTTAGGGGCGGAGCCACTCACTATTCCGATGGTGAGGACCGGTAGGGGCTCGACTGTCAAG
GACCCTTTAGGGTGCGTAAGCACGCTCGACTAATAAGGACCCTTTAGGGGGCTCGACTGATAAGG
AGAGGAGAGGGGGCTCGACTGATAAGGAGAGGAGAGGGGCGGAGC
Right flanking sequence: Indices 691353 -- 691852
TGCGTAAGCACACTCGACTGCCTTTGGTTACTTATTTGAGAGGAGGGGAGAGGGTGCGTTAGCAC
ACTCACTATTCATATGGTGAGGGGTCACTCACTCATTCCGATGGGTGAGGGGCTCGACTGATAAG
GAGAGGTACGTTAGTGACTCGACCAGCGCTAGTTACTTATTTGAGAGCCCAATAAGTCAAATGAA
TACGTTAGTGACTCGACTGATAAGGACCCTTTAGGGGGCTCGACTGATAAGGACCTTTAGGTGCT
CGACCCAGGGTTTACTTATTGGGTGGGGCAATAAGTCAACCCAAGAGGAGAGGTACGTTAGTGAC
TCGACCAGCGCTAGTTACTTATTTGAGAGCCCAATAAGTCAAATTGAAACGAGAAGAACTAAAAG
GCCGCCATCGCTCGACTGTTAAGGAGAGGAACTTGAAGAACCACCGGGCCGCCATCGCCTTTCAG
GACCTATTAATAATGAAGTGCAACAACGGAGAATGCACCTAAAGT
Found at i:691461 original size:27 final size:27
Alignment explanation
Indices: 691417--691469 Score: 72
Period size: 28 Copynumber: 2.0 Consensus size: 27
691407 TGCGTTAGCA
*
691417 CACTCACTATTCATAT-GGTGAGGGGT
1 CACTCACTATTCAGATGGGTGAGGGGT
*
691443 CACTCACTCATTCCGATGGGTGAGGGG
1 CACTCACT-ATTCAGATGGGTGAGGGG
691470 CTCGACTGAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 8 0.35
27 6 0.26
28 9 0.39
ACGTcount: A:0.21, C:0.23, G:0.30, T:0.26
Consensus pattern (27 bp):
CACTCACTATTCAGATGGGTGAGGGGT
Left flanking sequence: Indices 690917 -- 691416
CAGGGGCTCGACCACCGCCTTTTAGTTACTTATTTGAGAGCCCAATAAGTCAATTTCAACTTGAG
TTGCTCGACCACCGGGCCGCCATCACCGGCAGGGTGCGTAAGCACACTCGACTGCCCTTGCCCCC
GGAGGGACAAGCGGCTTCGCACCTTAGTTACTTATTTGAGAGGGGGGCCGCCATCGCCCCTACTA
CTTTATAGGGCCCTATATTCTTTAGGGGCGGAGCCACTCACTATTCCGATGGTGAGGACCGGTAG
GGGCTCGACTGTCAAGGACCCTTTAGGGTGCGTAAGCACGCTCGACTAATAAGGACCCTTTAGGG
GGCTCGACTGATAAGGAGAGGAGAGGGGGCTCGACTGATAAGGAGAGGAGAGGGGCGGAGCCACT
CACTATTCATATGGTGAGGGGTCACTCACTATTCATATGGTGAGGGTGCGTAAGCACACTCGACT
GCCTTTGGTTACTTATTTGAGAGGAGGGGAGAGGGTGCGTTAGCA
Right flanking sequence: Indices 691470 -- 691969
CTCGACTGATAAGGAGAGGTACGTTAGTGACTCGACCAGCGCTAGTTACTTATTTGAGAGCCCAA
TAAGTCAAATGAATACGTTAGTGACTCGACTGATAAGGACCCTTTAGGGGGCTCGACTGATAAGG
ACCTTTAGGTGCTCGACCCAGGGTTTACTTATTGGGTGGGGCAATAAGTCAACCCAAGAGGAGAG
GTACGTTAGTGACTCGACCAGCGCTAGTTACTTATTTGAGAGCCCAATAAGTCAAATTGAAACGA
GAAGAACTAAAAGGCCGCCATCGCTCGACTGTTAAGGAGAGGAACTTGAAGAACCACCGGGCCGC
CATCGCCTTTCAGGACCTATTAATAATGAAGTGCAACAACGGAGAATGCACCTAAAGTATTTGAC
TGTTCCGGCCGTCACGTAATAAGTCTTAACCTCATGCCCTGTGCCGTCCAACCAATATTGAGTAC
TTCACGCACGTCGGGAAAGGAAGCGCTTGGGATAACGGTAAAGTA
Found at i:691589 original size:27 final size:25
Alignment explanation
Indices: 691559--691616 Score: 89
Period size: 27 Copynumber: 2.2 Consensus size: 25
691549 ACGTTAGTGA
691559 CTCGACTGATAAGGACCCTTTAGGGGG
1 CTCGACTGATAAGGA-CCTTTA-GGGG
*
691586 CTCGACTGATAAGGACCTTTAGGTG
1 CTCGACTGATAAGGACCTTTAGGGG
691611 CTCGAC
1 CTCGAC
691617 CCAGGGTTTA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
25 9 0.30
26 6 0.20
27 15 0.50
ACGTcount: A:0.22, C:0.24, G:0.29, T:0.24
Consensus pattern (25 bp):
CTCGACTGATAAGGACCTTTAGGGG
Left flanking sequence: Indices 691059 -- 691558
GGCTTCGCACCTTAGTTACTTATTTGAGAGGGGGGCCGCCATCGCCCCTACTACTTTATAGGGCC
CTATATTCTTTAGGGGCGGAGCCACTCACTATTCCGATGGTGAGGACCGGTAGGGGCTCGACTGT
CAAGGACCCTTTAGGGTGCGTAAGCACGCTCGACTAATAAGGACCCTTTAGGGGGCTCGACTGAT
AAGGAGAGGAGAGGGGGCTCGACTGATAAGGAGAGGAGAGGGGCGGAGCCACTCACTATTCATAT
GGTGAGGGGTCACTCACTATTCATATGGTGAGGGTGCGTAAGCACACTCGACTGCCTTTGGTTAC
TTATTTGAGAGGAGGGGAGAGGGTGCGTTAGCACACTCACTATTCATATGGTGAGGGGTCACTCA
CTCATTCCGATGGGTGAGGGGCTCGACTGATAAGGAGAGGTACGTTAGTGACTCGACCAGCGCTA
GTTACTTATTTGAGAGCCCAATAAGTCAAATGAATACGTTAGTGA
Right flanking sequence: Indices 691617 -- 692116
CCAGGGTTTACTTATTGGGTGGGGCAATAAGTCAACCCAAGAGGAGAGGTACGTTAGTGACTCGA
CCAGCGCTAGTTACTTATTTGAGAGCCCAATAAGTCAAATTGAAACGAGAAGAACTAAAAGGCCG
CCATCGCTCGACTGTTAAGGAGAGGAACTTGAAGAACCACCGGGCCGCCATCGCCTTTCAGGACC
TATTAATAATGAAGTGCAACAACGGAGAATGCACCTAAAGTATTTGACTGTTCCGGCCGTCACGT
AATAAGTCTTAACCTCATGCCCTGTGCCGTCCAACCAATATTGAGTACTTCACGCACGTCGGGAA
AGGAAGCGCTTGGGATAACGGTAAAGTAATCACTTGGGTGGGATAACCTTGCATCGCATCTTTCT
GGCTGGTTCCAACGATGGAGTAGTTGGAGCCAACGAATAAAGGCTCTTTCCGTAATCCGGGAGCT
CTCTATTTTTCCTATCATGTTTCTCCTATCATTTTATCCCTATGC
Found at i:694009 original size:119 final size:119
Alignment explanation
Indices: 693844--694080 Score: 474
Period size: 119 Copynumber: 2.0 Consensus size: 119
693834 GTATATCACA
693844 CACATAACGTGGGGAGGGGGGAGGGAGAAGAAGCTTGCCTCTTCACAAGCTTCTTCTATCCCCCC
1 CACATAACGTGGGGAGGGGGGAGGGAGAAGAAGCTTGCCTCTTCACAAGCTTCTTCTATCCCCCC
693909 CCCGTGGGTTTTTGGCCAGATCTTCCCGAACTCTAACTCTGGCAGGTAAGACCG
66 CCCGTGGGTTTTTGGCCAGATCTTCCCGAACTCTAACTCTGGCAGGTAAGACCG
693963 CACATAACGTGGGGAGGGGGGAGGGAGAAGAAGCTTGCCTCTTCACAAGCTTCTTCTATCCCCCC
1 CACATAACGTGGGGAGGGGGGAGGGAGAAGAAGCTTGCCTCTTCACAAGCTTCTTCTATCCCCCC
694028 CCCGTGGGTTTTTGGCCAGATCTTCCCGAACTCTAACTCTGGCAGGTAAGACC
66 CCCGTGGGTTTTTGGCCAGATCTTCCCGAACTCTAACTCTGGCAGGTAAGACC
694081 AGGACCAGGA
Statistics
Matches: 118, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
119 118 1.00
ACGTcount: A:0.21, C:0.29, G:0.27, T:0.23
Consensus pattern (119 bp):
CACATAACGTGGGGAGGGGGGAGGGAGAAGAAGCTTGCCTCTTCACAAGCTTCTTCTATCCCCCC
CCCGTGGGTTTTTGGCCAGATCTTCCCGAACTCTAACTCTGGCAGGTAAGACCG
Left flanking sequence: Indices 693344 -- 693843
GAGACACTAGTAATCACCGCAGGTAACGCCAGTTGGCGAAGTGGCGTTAAGCATCCCCAGCGGTA
CGGAAAGAGAGGTCGTGATGATACCATCTACGTCCGTACCGCTCCTCGTGGAGTAGATCCCGCAT
CCAACCATTTGATTGACCAGGGAACGGGATAATTCCCACTAAGCCCCGGTTCAACCGGCGGGCCA
GCCGGGCCGTGAGCGCGGTGGGAACAGGATATTCCCAAAAAGCAAAAACCTCCAGGCTCGCCAAT
GAAGGGCCCTGATGTTGGCAAAGCCAACCACGCCCCCCCCTCCTTTTTCCATAAGGATGGGTAGG
GCCGGGGGGGGGGGTGGAAGCGGACGTGGGGACTCGGGGCCAATGGCGAGCGAGGAATGAGATGG
GCAGTTCATTTGGATCTATCTCCGCTCTGATAGGAAAAAAAGATTGGTCAGACGACAATTATTAT
TTTTTAGCCGCCGCTTACTATATTATATAAATACCGTATATCACA
Right flanking sequence: Indices 694081 -- 694580
AGGACCAGGATAACCTTGCAATGCCTTTCTGTACCGTGTAAAGGCCTTGCTATGACTTATGTCAC
GAAGTGTACACCAGGGTCTTTAGACACTCGATCTCCCTATGGTCAATCGAGTAACTAAAAGTTCC
CATCCCTATTTATTAATGATTAATGAATGAGCAACTTCGTTCCTCTCCTGTTAGTCGAGTCACTT
AACGTACCAGAGATCACATTTCATAAACAATTTGCTATTAGCTTGGTAATAGCAACATTTAGCAA
CTATATTATAATCCCCGTCGGTCTTCGTGTCTAAAGAACCTCGCCCAATTCTTCCTCTGGTCTTT
AGAGCGGTTCGGTTCCCTCACCCTCGCCCTCCTGCGTCTTTAGAGCGACTCCGTCCCTCGATCTC
CGGGGTAAGGTGAGTAACTAAAAGTTTCTCTCCCTATCGGTCGAGCAACTAAAAAGTTCCTAAGC
CATTGGCGTTGTGAAGAGGGGCGACTTCATTAAGTGGGCTAAGTA
Found at i:695120 original size:28 final size:28
Alignment explanation
Indices: 694977--695108 Score: 264
Period size: 28 Copynumber: 4.7 Consensus size: 28
694967 CGCGCTCTTT
694977 GAGGTATTTATTGCTCGACCGCTAGGGA
1 GAGGTATTTATTGCTCGACCGCTAGGGA
695005 GAGGTATTTATTGCTCGACCGCTAGGGA
1 GAGGTATTTATTGCTCGACCGCTAGGGA
695033 GAGGTATTTATTGCTCGACCGCTAGGGA
1 GAGGTATTTATTGCTCGACCGCTAGGGA
695061 GAGGTATTTATTGCTCGACCGCTAGGGA
1 GAGGTATTTATTGCTCGACCGCTAGGGA
695089 GAGGTATTTATTGCTCGACC
1 GAGGTATTTATTGCTCGACC
695109 ATAAGGGAGA
Statistics
Matches: 104, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 104 1.00
ACGTcount: A:0.21, C:0.18, G:0.31, T:0.30
Consensus pattern (28 bp):
GAGGTATTTATTGCTCGACCGCTAGGGA
Left flanking sequence: Indices 694477 -- 694976
AAGGTGAGTAACTAAAAGTTTCTCTCCCTATCGGTCGAGCAACTAAAAAGTTCCTAAGCCATTGG
CGTTGTGAAGAGGGGCGACTTCATTAAGTGGGCTAAGTAGTGGGATAGACAAAGAGATCTGTCTT
GTGCTTTGACACGCTAACTCATAACGTATTGACTCGTATCATTTCGGTCATTAGCCAGGGAGATA
AGTGCATACATAAGGAGAATAACTCCATAACAATGTTCCACCACAGCCCACTCATTGAAGGCTAA
GGGCGCCTACTTTCGTTATAGACGTATTTGATACAGTGAAGGTCTTCATTCGCCAATGAAATGAA
GGGCCATTCAAATACTTTCCTGGGGCCCCCTTTACTGATTACCCCCAAATCATTTTCTGGAGCTA
TTTGTCTTAGTGCTGTACCACGCTAACTCAGCCACTAACAACTGCCCTAGTTCGCGCGATAAGGA
TATGATAAGGAGAGGACACAACACCTTAGAAAGAACGCGCTCTTT
Right flanking sequence: Indices 695109 -- 695608
ATAAGGGAGAGGGAGAGGAACGTAGTCGCTCGACCAAAGGGAAAGGGGAATAAAGAAAGGGCGGG
ACCTTGCTCTCCTTTTGTCGAGCAAGCGAGAAATCGATGGCGGCCCGTTGGTCGAGCCATGCGTT
AGCACCCTCTCCTTATATTGAGAGCGTGCGTACCTCTCCTCTCCTTATCAGTCGAGCCCCCTAAA
GGGTCCTTATCAGTCGAGTCACTAACGTACCTCTCCTCTTGGGTTTACTTATTGCCCCACCCAAT
AAGTCAACCCTGGGTCGAGCACCTAAAGGTCCTTATCAGTCGAGCCCCCTAAAGGGTCCTTATCA
GTCGAGTCACTAACGTACCTTGATGCTTATTGGGTGGGGGGCGATGGTCGAGTAAGAAATTCCTC
TCCTTAACAGTCGAGCCCTGCCTTCCTTGATGCTTATTGGGTGGTGGGCGGTGGTCGAGCCTGCT
TACGCATCCTTACCTTACTTTACTTTACTTTACTTGCCCCATGGG
Found at i:695410 original size:25 final size:27
Alignment explanation
Indices: 695382--695439 Score: 93
Period size: 27 Copynumber: 2.2 Consensus size: 27
695372 TCAACCCTGG
695382 GTCGAG-CACCTAAA-GGTCCTTATCA
1 GTCGAGCCACCTAAAGGGTCCTTATCA
*
695407 GTCGAGCCCCCTAAAGGGTCCTTATCA
1 GTCGAGCCACCTAAAGGGTCCTTATCA
695434 GTCGAG
1 GTCGAG
695440 TCACTAACGT
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
25 6 0.20
26 7 0.23
27 17 0.57
ACGTcount: A:0.24, C:0.29, G:0.24, T:0.22
Consensus pattern (27 bp):
GTCGAGCCACCTAAAGGGTCCTTATCA
Left flanking sequence: Indices 694882 -- 695381
TACCACGCTAACTCAGCCACTAACAACTGCCCTAGTTCGCGCGATAAGGATATGATAAGGAGAGG
ACACAACACCTTAGAAAGAACGCGCTCTTTGAGGTATTTATTGCTCGACCGCTAGGGAGAGGTAT
TTATTGCTCGACCGCTAGGGAGAGGTATTTATTGCTCGACCGCTAGGGAGAGGTATTTATTGCTC
GACCGCTAGGGAGAGGTATTTATTGCTCGACCATAAGGGAGAGGGAGAGGAACGTAGTCGCTCGA
CCAAAGGGAAAGGGGAATAAAGAAAGGGCGGGACCTTGCTCTCCTTTTGTCGAGCAAGCGAGAAA
TCGATGGCGGCCCGTTGGTCGAGCCATGCGTTAGCACCCTCTCCTTATATTGAGAGCGTGCGTAC
CTCTCCTCTCCTTATCAGTCGAGCCCCCTAAAGGGTCCTTATCAGTCGAGTCACTAACGTACCTC
TCCTCTTGGGTTTACTTATTGCCCCACCCAATAAGTCAACCCTGG
Right flanking sequence: Indices 695440 -- 695939
TCACTAACGTACCTTGATGCTTATTGGGTGGGGGGCGATGGTCGAGTAAGAAATTCCTCTCCTTA
ACAGTCGAGCCCTGCCTTCCTTGATGCTTATTGGGTGGTGGGCGGTGGTCGAGCCTGCTTACGCA
TCCTTACCTTACTTTACTTTACTTTACTTGCCCCATGGGAAGAGCCGTATGAGGCAAAAACTCGT
CCCACGTACGGTTCGGAGGCCGAGCCCCAGCAGTAATGGCGCGGCTCAGGTCAACTAGCACGGAA
AAGATACAGTTTACTCAACGATTGCCTTTGGGTCCCGAACTCCATATGGGGAAGGAGCGTTGTGG
TTTGCGGGGTATTGATCATTCACATGGACCCACTTTTCATTCCATTTGTGGTAATTTGATGATCT
ATAAACCGTCCTTAACGAACCCATTCATGTTCGAGCATGATGAATCACTTCGTGCCATAATCGAC
CTGTTGCCAATCCACTTTTCCTCATATGAGAATGGAAAACTGGAT
Found at i:695446 original size:26 final size:24
Alignment explanation
Indices: 695382--695446 Score: 76
Period size: 27 Copynumber: 2.5 Consensus size: 24
695372 TCAACCCTGG
695382 GTCGAGCACCTAAAGGTCCTTATCA
1 GTCGAGCA-CTAAAGGTCCTTATCA
*
695407 GTCGAGCCCCCTAAAGGGTCCTTATCA
1 GTCGAG--CACTAAA-GGTCCTTATCA
695434 GTCGAGTCACTAA
1 GTCGAG-CACTAA
695447 CGTACCTTGA
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
25 6 0.18
26 10 0.29
27 18 0.53
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (24 bp):
GTCGAGCACTAAAGGTCCTTATCA
Left flanking sequence: Indices 694882 -- 695381
TACCACGCTAACTCAGCCACTAACAACTGCCCTAGTTCGCGCGATAAGGATATGATAAGGAGAGG
ACACAACACCTTAGAAAGAACGCGCTCTTTGAGGTATTTATTGCTCGACCGCTAGGGAGAGGTAT
TTATTGCTCGACCGCTAGGGAGAGGTATTTATTGCTCGACCGCTAGGGAGAGGTATTTATTGCTC
GACCGCTAGGGAGAGGTATTTATTGCTCGACCATAAGGGAGAGGGAGAGGAACGTAGTCGCTCGA
CCAAAGGGAAAGGGGAATAAAGAAAGGGCGGGACCTTGCTCTCCTTTTGTCGAGCAAGCGAGAAA
TCGATGGCGGCCCGTTGGTCGAGCCATGCGTTAGCACCCTCTCCTTATATTGAGAGCGTGCGTAC
CTCTCCTCTCCTTATCAGTCGAGCCCCCTAAAGGGTCCTTATCAGTCGAGTCACTAACGTACCTC
TCCTCTTGGGTTTACTTATTGCCCCACCCAATAAGTCAACCCTGG
Right flanking sequence: Indices 695447 -- 695946
CGTACCTTGATGCTTATTGGGTGGGGGGCGATGGTCGAGTAAGAAATTCCTCTCCTTAACAGTCG
AGCCCTGCCTTCCTTGATGCTTATTGGGTGGTGGGCGGTGGTCGAGCCTGCTTACGCATCCTTAC
CTTACTTTACTTTACTTTACTTGCCCCATGGGAAGAGCCGTATGAGGCAAAAACTCGTCCCACGT
ACGGTTCGGAGGCCGAGCCCCAGCAGTAATGGCGCGGCTCAGGTCAACTAGCACGGAAAAGATAC
AGTTTACTCAACGATTGCCTTTGGGTCCCGAACTCCATATGGGGAAGGAGCGTTGTGGTTTGCGG
GGTATTGATCATTCACATGGACCCACTTTTCATTCCATTTGTGGTAATTTGATGATCTATAAACC
GTCCTTAACGAACCCATTCATGTTCGAGCATGATGAATCACTTCGTGCCATAATCGACCTGTTGC
CAATCCACTTTTCCTCATATGAGAATGGAAAACTGGATTCTTTTC
Found at i:697477 original size:31 final size:31
Alignment explanation
Indices: 697431--697590 Score: 284
Period size: 31 Copynumber: 5.2 Consensus size: 31
697421 TCGATATTAT
* * * *
697431 TCCTCTCCCGTTGGTCGAGCCTGCTTGCGCA
1 TCCTTTCCCGGTGGTCAAGCCTGCTTACGCA
697462 TCCTTTCCCGGTGGTCAAGCCTGCTTACGCA
1 TCCTTTCCCGGTGGTCAAGCCTGCTTACGCA
697493 TCCTTTCCCGGTGGTCAAGCCTGCTTACGCA
1 TCCTTTCCCGGTGGTCAAGCCTGCTTACGCA
697524 TCCTTTCCCGGTGGTCAAGCCTGCTTACGCA
1 TCCTTTCCCGGTGGTCAAGCCTGCTTACGCA
697555 TCCTTTCCCGGTGGTCAAGCCTGCTTACGCA
1 TCCTTTCCCGGTGGTCAAGCCTGCTTACGCA
697586 TCCTT
1 TCCTT
697591 GCCCCCTAAA
Statistics
Matches: 125, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 125 1.00
ACGTcount: A:0.11, C:0.36, G:0.23, T:0.30
Consensus pattern (31 bp):
TCCTTTCCCGGTGGTCAAGCCTGCTTACGCA
Left flanking sequence: Indices 696931 -- 697430
ATGGGGCACTCGACTCTAATAAAAGGCTTTCTCTGGAACAATTTGATAAGTAGTAGTAACAGGTT
GAAGGAGATCGGGGATAGCTTTTCTTTCTGCACGGTTACAGGTCGATCTTATTACTCTTCCCGTT
GTTGATCTTATTCAAAGCTAAGTTTGTTGGCGATCTATCCGGCTGCCTTATCAGCGTTGTTTACT
GCCCTCCGTTTTCTTGCTCGCCCGGACTCTTTAGAGAGCTGAAAGGGCTACCGAAAAGAAATGTT
CTGGAATAAGAATGCCGGAATATCCTGCAACAAACCTTTGAAAGAGAAAAGAAATAGGAGGTAGA
CTCCTGTCCTTTATTGCGGCCGGATCAAATCCTTTTTCTTTCTGGCATGGCGAGCTGGTTGTTTG
CTGGCAGATAGGAATGCTGGTGATCGAATTTAGCTCGCTCTAAGTAAGAGGTTGCCCTTCTCCAG
GTCGATCCGGCGGGCAGAATTTTTGCTTATCCGGATCGATATTAT
Right flanking sequence: Indices 697591 -- 698090
GCCCCCTAAAAAAAAGACCTTACTATTCTTTAAGGTAGGTTCTTTAGTACAATCACTCAGGCTCA
AGCATCATCTATCGTCGAGGAATCCTGCACGATGATCAGAGAGCTTTAGACATACATTTACATAC
ATTGTGCCCCGGTCCACCTTATCCGAGCTTCTATGCTTTGTTTCACACGTGCTCCAGTTACGGTT
CCATATACAAATCCATACCCATTCATTAGAGATCCACCAGATACAGATAAAGTTCCAACGGATCC
ATCAGATGCTGAGCTAGATGCATTTAGGAAAGATCCAGCACCGCCGGTTGATTACTCAGTTTACC
TAGAAGCATCCCTTCCGGATCTATAGCTATCATTCAGAGTATACCCCAGTCTAGCAGCAGGGGTA
GCAGATCGAGTAGCAGCAACAAAGGCAGGGGGTAAAAGAGGGCGGTTCGATACTTGTTCTAAAGC
CAGAGCTTCGCAGTGTTGCGCGCCCGATCCGTAACACAGTCCCTA
Found at i:697613 original size:62 final size:61
Alignment explanation
Indices: 697484--697603 Score: 159
Period size: 62 Copynumber: 2.0 Consensus size: 61
697474 GGTCAAGCCT
* ** **** *
697484 GCTTACGCATCCTTTCCCGGTGGTCAAGCCTGCTTACGCATCCTTTCCCGGTGGTCAAGCC
1 GCTTACGCATCCTTTCCCGGTGGTCAAGCCTGCTTACGCATCCTTGCCCCCTAAAAAAGAC
697545 TGCTTACGCATCCTTTCCCGGTGGTCAAGCCTGCTTACGCATCCTTGCCCCCTAAAAAA
1 -GCTTACGCATCCTTTCCCGGTGGTCAAGCCTGCTTACGCATCCTTGCCCCCTAAAAAA
697604 AAGACCTTAC
Statistics
Matches: 51, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
62 51 1.00
ACGTcount: A:0.17, C:0.36, G:0.20, T:0.28
Consensus pattern (61 bp):
GCTTACGCATCCTTTCCCGGTGGTCAAGCCTGCTTACGCATCCTTGCCCCCTAAAAAAGAC
Left flanking sequence: Indices 696984 -- 697483
TAGTAACAGGTTGAAGGAGATCGGGGATAGCTTTTCTTTCTGCACGGTTACAGGTCGATCTTATT
ACTCTTCCCGTTGTTGATCTTATTCAAAGCTAAGTTTGTTGGCGATCTATCCGGCTGCCTTATCA
GCGTTGTTTACTGCCCTCCGTTTTCTTGCTCGCCCGGACTCTTTAGAGAGCTGAAAGGGCTACCG
AAAAGAAATGTTCTGGAATAAGAATGCCGGAATATCCTGCAACAAACCTTTGAAAGAGAAAAGAA
ATAGGAGGTAGACTCCTGTCCTTTATTGCGGCCGGATCAAATCCTTTTTCTTTCTGGCATGGCGA
GCTGGTTGTTTGCTGGCAGATAGGAATGCTGGTGATCGAATTTAGCTCGCTCTAAGTAAGAGGTT
GCCCTTCTCCAGGTCGATCCGGCGGGCAGAATTTTTGCTTATCCGGATCGATATTATTCCTCTCC
CGTTGGTCGAGCCTGCTTGCGCATCCTTTCCCGGTGGTCAAGCCT
Right flanking sequence: Indices 697604 -- 698103
AAGACCTTACTATTCTTTAAGGTAGGTTCTTTAGTACAATCACTCAGGCTCAAGCATCATCTATC
GTCGAGGAATCCTGCACGATGATCAGAGAGCTTTAGACATACATTTACATACATTGTGCCCCGGT
CCACCTTATCCGAGCTTCTATGCTTTGTTTCACACGTGCTCCAGTTACGGTTCCATATACAAATC
CATACCCATTCATTAGAGATCCACCAGATACAGATAAAGTTCCAACGGATCCATCAGATGCTGAG
CTAGATGCATTTAGGAAAGATCCAGCACCGCCGGTTGATTACTCAGTTTACCTAGAAGCATCCCT
TCCGGATCTATAGCTATCATTCAGAGTATACCCCAGTCTAGCAGCAGGGGTAGCAGATCGAGTAG
CAGCAACAAAGGCAGGGGGTAAAAGAGGGCGGTTCGATACTTGTTCTAAAGCCAGAGCTTCGCAG
TGTTGCGCGCCCGATCCGTAACACAGTCCCTATCACAGAGCAGGC
Found at i:699879 original size:30 final size:30
Alignment explanation
Indices: 699845--699922 Score: 156
Period size: 30 Copynumber: 2.6 Consensus size: 30
699835 CTATTGGATG
699845 GTTCGATGGCTTGGCTTGGCAGGTGAGATA
1 GTTCGATGGCTTGGCTTGGCAGGTGAGATA
699875 GTTCGATGGCTTGGCTTGGCAGGTGAGATA
1 GTTCGATGGCTTGGCTTGGCAGGTGAGATA
699905 GTTCGATGGCTTGGCTTG
1 GTTCGATGGCTTGGCTTG
699923 CTATTAGAGG
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 48 1.00
ACGTcount: A:0.14, C:0.14, G:0.40, T:0.32
Consensus pattern (30 bp):
GTTCGATGGCTTGGCTTGGCAGGTGAGATA
Left flanking sequence: Indices 699345 -- 699844
AGTGATATACATCTTCAATCAGTTTCTCATTCATTACTTACGAGCATGTACCACCTTTTACCGAA
GAGGACATTCAGTCAAGTACAAGAAAATCACTATTTGAACCTGTAGGCACGTGTGGATACGTCGT
ACAATAAGGAATATCAAACCCTATTGGCAAGTGTAGCTACTAGTTCGGGAAGCTCCAAACTAGGG
ACTGAAACAACCAAGCTTCCCTAATACCAGAGGAAAGGACTCGCTACCGCTCGGAGTCATTACTT
AGTTTCACTCACCCCTGCTCCGCTCAGTCTTGACCGACCTAAGAAAAAGAAGGGAGTCGTTAGAA
AGCCTTACCTCATCGAGCAGGAAGTCACTTGAATACTTACCTTATGGAAACGAAAAATACAGGGT
GAACAACACATCCTGGGTGCGATTTGATGGGAGTTCGTTGATATGGGCAGGAAAGAAAGACCCTA
TTATTGCGGGCAAGAAAGGTAGCTTGCGAGAATAGCTATTGGATG
Right flanking sequence: Indices 699923 -- 700422
CTATTAGAGGTCCCGCAAGGGTACAAGTGCTTACCCAGTAGTGCGGACCCAACCCAACGTATCAA
GCCATTGATCTAGTAGTACAGGTTTCTAGTTCATGAAAGATTATTTAGACTAATCAAGATATATA
GACGGATTATTCTATACGTAATAAGTCTACTCATCAGTCAAGAATATGACCTAAATAAGAAGTAT
TACAATTCGTACAGTTATAGATAGACAAGCTCGGTAAGGTAAGGATACAAGGCCAGACCCTCCCT
ATATCAAAATATTTCTGGGTGTATCCACTACTAAGGTTTGACAAATTTCATTCTAAAGTACGGAA
AAGATCTCTAAGCACGGGAAAGAGATAGAAGTACAGGAAAGATATCTCCTCGAGCGTTAGAGAGA
AAAGCACGGGGAAGAGAGATAAGCCATTAAGCCCCTCAATAGCCTATAGAAGCCATTTCAACCCT
GAATCAATAAGTCAACCCGAAGCATGGCATTAATGTCCCCGGCGG
Found at i:700912 original size:31 final size:31
Alignment explanation
Indices: 700877--700938 Score: 79
Period size: 31 Copynumber: 2.0 Consensus size: 31
700867 TAAGGACAGT
** *
700877 GACCAGTCTAAATAATCTGTATAAAGGCAAG
1 GACCAGTAGAAATAATCTGTATAAAGACAAG
* *
700908 GACCAGTAGAAATACTTTGTATAAAGACAAG
1 GACCAGTAGAAATAATCTGTATAAAGACAAG
700939 AGAAGCATAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.44, C:0.15, G:0.19, T:0.23
Consensus pattern (31 bp):
GACCAGTAGAAATAATCTGTATAAAGACAAG
Left flanking sequence: Indices 700377 -- 700876
TGAATCAATAAGTCAACCCGAAGCATGGCATTAATGTCCCCGGCGGGGAATTGGGAATTGAACTA
AATTTGCTTCATTGTCAGGTTCAACTTCTGGTTTTATACATATTTGTTAAGGTATTTGCAAGGTC
TTCGAAATGGGACCAACACTACTAAAAGATGAATTATACCACATTTAGGGTCCATCCATGACCGG
GCATATTTGATAGAGTTGGGACGAAGGCTAAGAAAGACTTGCAGGATGTGCCCAAACGAATATGG
AGATGACACATGGCATCATATCAGGTTAACTGGTGGCACACCATCTTAAAGGTACTTACGTCAGC
AGAGACATGTGGACATCTTATCGACCAATCAGAACCTACTTCACCCAATTAGGTACGTTAGTGAC
TTTTTAGTTACTTATTTGAGAGGGGCCACCCAATAAGTCAAATGAACCCGCTTGCTTGACGTTAG
GAGGGCAAGGAAAGAGGTCGAACAATCATAAATGGTAAGGACAGT
Right flanking sequence: Indices 700939 -- 701438
AGAAGCATAAAGGCAAGAGAACCTAACCCAGGTGGGTGAGGTGAGCGATCCTCCATAATGGTAAT
TAGTAATGTAAATTGTAAGAGGTCATTTCATGTCCCAGTTCAATTGCGGACAAACGAAATTCATC
AAAGAAAGGGCTATAAGTTTTCTATAGAATCCAATGATTGGTTTGGTGCAATACATCACCAGTAC
CTGTTTGGTCAACCCATGCCCAGAATCCCTTCCTGCATAAGGAAACCCATGTGCCCCAGGGGTGA
CCCCAAGTTCGTTGACTGGTTTCTGAGGTAGGACTTTACTTATTTCGGGATGTATGGTAGCCAGA
TGCCCACCAAAGCTCTTCCTGTGCATGTCACAGCTTGCTTTCAAGTATGGGGGCGGCCTGTGTAT
CAGACAATTGTTGGATTTCAATAAAGCTTTAGGGAGTGGGGGAAAGGCAGCCCTGAGAACAACCC
CATTTTCCTGCCCTCCACTCATTCATTTTGAATCTAATCACTCTT
Found at i:701859 original size:18 final size:18
Alignment explanation
Indices: 701833--701879 Score: 76
Period size: 18 Copynumber: 2.6 Consensus size: 18
701823 CTAAAGTGGA
* *
701833 CTGGTTCAATACTGATTT
1 CTGGGTCAATACTGAATT
701851 CTGGGTCAATACTGAATT
1 CTGGGTCAATACTGAATT
701869 CTGGGTCAATA
1 CTGGGTCAATA
701880 TTTCTGGGGG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.26, C:0.17, G:0.21, T:0.36
Consensus pattern (18 bp):
CTGGGTCAATACTGAATT
Left flanking sequence: Indices 701333 -- 701832
CAATTGTTGGATTTCAATAAAGCTTTAGGGAGTGGGGGAAAGGCAGCCCTGAGAACAACCCCATT
TTCCTGCCCTCCACTCATTCATTTTGAATCTAATCACTCTTTAGATGCAACCATTCCCAGTCCTA
CCCATAACTAGTGCTTTCTATTTCAATTACTGAAAGCAAGGCCGACCCTTCTGGTCTCTTAAACA
AGTGGATGGAACATGCGGCCATGCCCGGCTTGAGAATAGTGCACCAATAAGATCCGCTGGAGAAG
GTGTCCAGAAATAGAGAAAGCTGGGATGAAATCCAGATTCTCTTGCATGAATTTCAGATTGAAAA
ATACAGAATCTACTGTTCCAAGGAAACCCGAAGGAAATGTCTATTGGCTTACAAATGACCCTGGA
AATATTGATACTTGGGATGATAACAAAACTAGATTGCTTCATAGATGGGCAATAGATGGATGCTC
AAATAAACTATACCTTCCAACTGGGTCAGCAGCTACTAAAGTGGA
Right flanking sequence: Indices 701880 -- 702379
TTTCTGGGGGAGACGTAAAGCAAACTACTACTCACTCATCTACCTGTTGCCATCATTCGCAAGCA
AGTTGGGTTCATAGGCGAGAATGGGTCAGCAGCTACTCAATACTTCTGGGTCACCCGGCTTCTGT
GATGGTCAAGAGTTTTTTGATGCGGGAGAGCGAATAACGGGGAACAGCCTTTAGCAATGTATAAC
TCCCAAAAACCTTACCTTTTAGCTAGCGATTTGAGGGGAATATAGGGCCTTTCCTTCTAGCTTAG
GTCAGGTTATCACTTACTTGAGTATAGCTCTTTGAGGGGAAGAAAGAAATAACCCAGTCAAGTCT
TTCTTTAAGTAGCTCTGAATGTACGAAGTATAACTAGATTCTTCCCTTAATGAAGTAATTACCTG
TATTATTTCGGTCACTAGAAATATAATAAAGCCAAGCGACAAAGGAAAAAGCGTAATTACATATA
TAAAGAATGACCAGCAGCTACGCCTTATCACCTTTTGTATATTAC
Found at i:703389 original size:39 final size:39
Alignment explanation
Indices: 703335--703413 Score: 158
Period size: 39 Copynumber: 2.0 Consensus size: 39
703325 GTTAGAGTTC
703335 GGGAAGATAAAGATCGGCCGGATTCGAACCGGTCTGGCT
1 GGGAAGATAAAGATCGGCCGGATTCGAACCGGTCTGGCT
703374 GGGAAGATAAAGATCGGCCGGATTCGAACCGGTCTGGCT
1 GGGAAGATAAAGATCGGCCGGATTCGAACCGGTCTGGCT
703413 G
1 G
703414 AAGCTCCCCT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.25, C:0.20, G:0.37, T:0.18
Consensus pattern (39 bp):
GGGAAGATAAAGATCGGCCGGATTCGAACCGGTCTGGCT
Left flanking sequence: Indices 702835 -- 703334
TTTTTACCTGTTGCTGCTGCCTACGCTATCACATCTATGAGTAAGTAACCTTCAGCGATTACACC
CGCCTACAAGCACTGGTCTGCACTCATCCATGGCCACCTTCTTATGGTCTTATTATATTTCCAGG
CAAAGCATGCTTAGATCTAGGCAAAGGATAAGGATAGACTCTAGGTCTAGACATCAAAGGGATTT
CTCTATATGCGTTAGTTAGACCAATTCTCTTTCAATAGTGCCGGGGCTTGCTCCCTTCCATCAAG
ATATTGATTCCTTCCAGCCGTTGTTATGGCCAAATTAGTAGGGTGAGGAAGCGAACTCTCGACCA
CCGCCATCGAAATCTGTTCAAACCTCCGCAGCTATCTGATATGATATGAAATGCATAATGACATA
TATAATGAGATATCTCTTTGTATACGATATTCTGGATTGACTTGATTTCTTCCCCTCAAAGAGCT
CTGCGAAAGTAAGGTCCTTTACCGGGTGAAAATGAGTTAGAGTTC
Right flanking sequence: Indices 703414 -- 703913
AAGCTCCCCTGCTTCCCGATCTTCGATCTGTCGTCCTCCTCATTATAGTCCTATCAAGAATTGAT
AATCAAAAAAAGTCCATAAGGCAGACCATGCTATAGTGTTGGGTAAGGTACAGAGCCGTGCGTCT
GTTCTCTCTTCCAGGAAGAGGGATATTATATACGCGCATTAAGCAATAGGCAGCAGATCAAATGC
CTCTTGACATTCTGGAGTCCAACTCAAATTTGTATCTATTTGAAAAAGCTTTTCCAGAGGTGGTG
TTATGCGCATGTAATTTATGTAGGTAGCTAAGGACTTGCCTGTCTTCGTTGGTGCCTGCTGGGAG
GGCTTGCCTCCTTGTTGGTGGTTGATCGCTAACGCTTGCCCATGCATGATCTGCTTTGAAGGTGA
ACTATCGTGGCCTTCCTTGCCAGGCAGGGGGTTCCACACAGGAAGAGCCGTGCATGCCCGTTTCA
TCCATATGGTCTCTCTACGTCGTGTTCATATAGGCCATGGAGACG
Found at i:708772 original size:29 final size:30
Alignment explanation
Indices: 708714--708773 Score: 70
Period size: 30 Copynumber: 2.0 Consensus size: 30
708704 ATTTGGGGGA
* *
708714 ACCCACGTATGTTCAAATGGGCAGGTAGGG
1 ACCCACGTATGTTCAAATGGGCAAGCAGGG
*
708744 ACCCACGTATG-TCAAAATGTG-AAGCAGGG
1 ACCCACGTATGTTC-AAATGGGCAAGCAGGG
708773 A
1 A
708774 TGTCAGATGA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
29 9 0.35
30 17 0.65
ACGTcount: A:0.32, C:0.20, G:0.30, T:0.18
Consensus pattern (30 bp):
ACCCACGTATGTTCAAATGGGCAAGCAGGG
Left flanking sequence: Indices 708214 -- 708713
TCACTCACATGCGAGGTGGTGGTTGGCTTGGTTGGATACGAACGAAGCGTAATGTCGAAGTAGTG
AAAGGTGAATATGATGGCGAACATAAGGGTGCGTAAGCACACTCGACTGTTAAGGAGAGGAATTC
CTGTAGTGTCAAAGCATAACGAATTCCTGTAGTTCGGGTGGTGGGATCTATGCCTTGGTCCATAA
GCATGGTAGTAATGGTCTGACCTGGTGCATGATGGGTAGTACGTTCCACAGGGTGACTGGTATGG
TGAAAAAGATGTGTAGTCAACCTCAATCTTTGTCCCTGGTATTTAAGGTATAAGTAACAAGAGAA
AGAGTAGGTGTATACGGCAAAACCCGAGTAAGGGGCAAGCAAAACGAAGAGGTCAATACCCGGTG
TTGCAAGCTTTTACGTGAAGGGTACACATCTCGACAAAGGCTTAGGGGCCAACATGATCTATTAG
GGTACACTGTAGTAATTAGCAAGAGAAATAGATGTATTTGGGGGA
Right flanking sequence: Indices 708774 -- 709273
TGTCAGATGATGAAGTGGAATCCGGCAATACCAATAGCAAAGACTAGACAGGAAGGTATTCATAG
CCAGTTCCAGCATAAGTCTAAGATGCATAGCCATGAACAGGTTGACCAGCAACACAGGGATAAAG
GACTAAAGATTACATGAAAGTGAAGGTTAGATATTGAGTTGGTGAAGAAGCGAGGTCGAGATGAA
GAGTTCAGGGTGGTGGGAACCAATGATCACTTGGTGTCAGGGTGACGCACATAATCTTCACGTCA
TGTTGAAGTGGGATATACAATGTTATATAGGGTCACACTACTGATGGTAGGGAGCATGCTCCTGG
GATGCAAAATATGCAAGTGTGACGTTTCAACTTTCCTATCATACACGTTTGAAGGGGTGGGGGAA
TCGGTATGGTGGTGGAAGAGTCTATGGAAGTGACAATGCCCTTGAAAAGCTCATATTCTTATGTG
GTTGGCTCTTAAAAAAGGGCTCTTACCTGCCCTGCCTGGGATATG
Found at i:710981 original size:43 final size:43
Alignment explanation
Indices: 710927--711012 Score: 172
Period size: 43 Copynumber: 2.0 Consensus size: 43
710917 ATGAGGGTGA
710927 GTCACTTTCCTTGGCTACTTAGCTTTTCTTTTCTTTAATGAAG
1 GTCACTTTCCTTGGCTACTTAGCTTTTCTTTTCTTTAATGAAG
710970 GTCACTTTCCTTGGCTACTTAGCTTTTCTTTTCTTTAATGAAG
1 GTCACTTTCCTTGGCTACTTAGCTTTTCTTTTCTTTAATGAAG
711013 AATGAGGGAG
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.16, C:0.21, G:0.14, T:0.49
Consensus pattern (43 bp):
GTCACTTTCCTTGGCTACTTAGCTTTTCTTTTCTTTAATGAAG
Left flanking sequence: Indices 710427 -- 710926
CCCCGCATCATTTCATTAGGTTATCCCATGGGGGTGGGCGGAGGCCTAGTATTTATAAAGAACAA
ATCTCTTGCCACTATTGAATAGAAATTCCCGTTTCAAGCTGTTGTTAGGAAGGTCACCAGCATTC
CATGAGATCCCCTCCGGGCCTTTGGTCTCCTTATGGAGCATGGATAGAGTTGCCTAATATTTTAG
ACTGCCCACGGACTGTCCGAGGAATGCCACTATCCAAAGGTCGAGTTCATTACGGTATAGGCGAC
TTCATTACGGTACAGTCACTAGGTCGAGGACTAGTCATTGATGTATCACTAAACGAAGTCTGTCA
CGAGGAATCAGTACGCCCGACGGTACTTGAAAAGGGTGAAAGTGGAAATACAGCGCATGAAAATG
GCCTTTGACACAGTTTATCACTCATATCTGTAGGTAGGAAAAGATAGAGAGATTTCTTATTTGAA
GAGAAGAGCGAAGAAATCTCTTCCGTTCATGAAGAATGAGGGTGA
Right flanking sequence: Indices 711013 -- 711512
AATGAGGGAGGTGGTGTGGATGCAGGTAAGTTGAGTGCATCAGGCTGGCTATTTCTTTCTCTCTT
TTCTTTCGGTAACTAGGCAGCCTTGAGCAATATATAAACCCCCAAAGAAATCAATATCATTATAT
ATGTCATTACGCCATCTCGCCGAAACTACCACATGCTCATATATAACTACCACCATTTCACCGGG
CTATCAATTAGGTACGTTAGTGACTCGACTGATAAGGACCCTTTAGGGGGCTCGACTGATAAGGA
GAGGAGAGGTACGTTAGTGACTCGACCAGCGCTAGTTACTTATTTGAGAGGGGCACCCAATAAGT
AAAATGAGGGAATGAGTCAAACAACCAAGCTACTTACGGAGGTGGCTTAGTGATCAGGCCTGGGC
CAGCGTAACACCTACCGAGAGCAGCTGAACCAACCGAGGGATTGGCCTTTTAGACTATTTCTTAG
GTCTACGCAGGGCCCAACACGGAGCCCGCTTGGGCGTGTCAAGTA
Found at i:711639 original size:25 final size:25
Alignment explanation
Indices: 711605--711680 Score: 143
Period size: 25 Copynumber: 3.0 Consensus size: 25
711595 AGTAAATTGA
711605 ACCTTTAGGTGCTCGACTGTTAAGG
1 ACCTTTAGGTGCTCGACTGTTAAGG
*
711630 ACCTTTAGGTGCTCGACTGATAAGG
1 ACCTTTAGGTGCTCGACTGTTAAGG
711655 ACCTTTAGGTGCTCGACTGTTAAGG
1 ACCTTTAGGTGCTCGACTGTTAAGG
711680 A
1 A
711681 GAGGAGAGGA
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 49 1.00
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (25 bp):
ACCTTTAGGTGCTCGACTGTTAAGG
Left flanking sequence: Indices 711105 -- 711604
CAATATATAAACCCCCAAAGAAATCAATATCATTATATATGTCATTACGCCATCTCGCCGAAACT
ACCACATGCTCATATATAACTACCACCATTTCACCGGGCTATCAATTAGGTACGTTAGTGACTCG
ACTGATAAGGACCCTTTAGGGGGCTCGACTGATAAGGAGAGGAGAGGTACGTTAGTGACTCGACC
AGCGCTAGTTACTTATTTGAGAGGGGCACCCAATAAGTAAAATGAGGGAATGAGTCAAACAACCA
AGCTACTTACGGAGGTGGCTTAGTGATCAGGCCTGGGCCAGCGTAACACCTACCGAGAGCAGCTG
AACCAACCGAGGGATTGGCCTTTTAGACTATTTCTTAGGTCTACGCAGGGCCCAACACGGAGCCC
GCTTGGGCGTGTCAAGTAGCCGTAAAACGCACGCAAATGCCCCTTGATGCGGAGCACGCTCGACC
AACGCTAGTTACTTATTTGAGAGGGGCACCCAATAAGTAAATTGA
Right flanking sequence: Indices 711681 -- 712180
GAGGAGAGGATGCGCAAGCATGCTCGACTGTTAACCCCCCAAACCAATAAGTAAACCCTAACCTT
TAGGTGCTCGACCCAGGGTTGACTTATTGGGTGGGGCAATAAGTACCCTCACCAGAGGAGAGGAG
AGTGACCCCTAAAGAATATAGAGCCCTCCAGGGGGCTCGACTGATAAGGACCTTTAGGTGCTCGA
CCCAGGGTTGACTTATTGGGTGGGGCAATAAGTAAACCCAAGAGGAGAGGACCTTTAGGTGCTCG
ACTGTTAAGGACCCTTTAGGGTGCGTAAGCACGCTCGACTAATAAGGACCCTTTAGGGGGCTCGA
CTGATAAGGAGAGGAGAGGGGGCTCGACTGATAAGGAGAGGAGAGGGCCGCCATCGAGAGGAGAG
GGCCGCCATCGAGAGGAGAGGAGAGGAGAGGATGCGCAAGCAGGCTCTCAATCTAGCCCCCCCAC
CCAATAAGTAAATTGAACCTTATTCTTTTTTCATAGAATGGAATT
Found at i:712012 original size:27 final size:27
Alignment explanation
Indices: 711995--712052 Score: 80
Period size: 27 Copynumber: 2.1 Consensus size: 27
711985 AGGACCCTTT
* *
711995 AGGGGGCTCGACTGATAAGGAGAGGAG
1 AGGGGGCTCGACTGATAAGGACACGAG
* *
712022 AGGGGGCTCGACTGATAAGGAGAGGAG
1 AGGGGGCTCGACTGATAAGGACACGAG
712049 AGGG
1 AGGG
712053 CCGCCATCGA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.29, C:0.10, G:0.50, T:0.10
Consensus pattern (27 bp):
AGGGGGCTCGACTGATAAGGACACGAG
Left flanking sequence: Indices 711495 -- 711994
GCTTGGGCGTGTCAAGTAGCCGTAAAACGCACGCAAATGCCCCTTGATGCGGAGCACGCTCGACC
AACGCTAGTTACTTATTTGAGAGGGGCACCCAATAAGTAAATTGAACCTTTAGGTGCTCGACTGT
TAAGGACCTTTAGGTGCTCGACTGATAAGGACCTTTAGGTGCTCGACTGTTAAGGAGAGGAGAGG
ATGCGCAAGCATGCTCGACTGTTAACCCCCCAAACCAATAAGTAAACCCTAACCTTTAGGTGCTC
GACCCAGGGTTGACTTATTGGGTGGGGCAATAAGTACCCTCACCAGAGGAGAGGAGAGTGACCCC
TAAAGAATATAGAGCCCTCCAGGGGGCTCGACTGATAAGGACCTTTAGGTGCTCGACCCAGGGTT
GACTTATTGGGTGGGGCAATAAGTAAACCCAAGAGGAGAGGACCTTTAGGTGCTCGACTGTTAAG
GACCCTTTAGGGTGCGTAAGCACGCTCGACTAATAAGGACCCTTT
Right flanking sequence: Indices 712053 -- 712552
CCGCCATCGAGAGGAGAGGGCCGCCATCGAGAGGAGAGGAGAGGAGAGGATGCGCAAGCAGGCTC
TCAATCTAGCCCCCCCACCCAATAAGTAAATTGAACCTTATTCTTTTTTCATAGAATGGAATTGA
TAGGGGTTTACTTGGCCAACCAAGAAGGGCAGGCCCTTTCATAAATAAAGGCCAAAAGAAATAAG
GAAAAAGGCCTGCCTCCCCGGTCATTACCGTTCATCACTTTACCACTTGATGGACAAGCCGCCCT
TATCTCCTTGGCGTTCGAACTGATTGATTTACAGAAATAATACGCCACACAGCCAGCCCCCCCCC
CCCTTCTGCTATATGGATGGATTTCTCTTTCATTGATGGCCCATCAAGACAAGAAGTGTTTGCGC
CTTATCTGTTCCCTATTTCTTTCCTCCCCTATCGCCAGCTTTTTGTCTCGTCCCCTACCTATTCG
TTTCGTTTGCCCTTTTCGTTTCCCTCATATAATTCCGCTTTCGAT
Found at i:712066 original size:20 final size:20
Alignment explanation
Indices: 712041--712091 Score: 102
Period size: 20 Copynumber: 2.5 Consensus size: 20
712031 GACTGATAAG
712041 GAGAGGAGAGGGCCGCCATC
1 GAGAGGAGAGGGCCGCCATC
712061 GAGAGGAGAGGGCCGCCATC
1 GAGAGGAGAGGGCCGCCATC
712081 GAGAGGAGAGG
1 GAGAGGAGAGG
712092 AGAGGAGAGG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.27, C:0.20, G:0.49, T:0.04
Consensus pattern (20 bp):
GAGAGGAGAGGGCCGCCATC
Left flanking sequence: Indices 711541 -- 712040
ATGCGGAGCACGCTCGACCAACGCTAGTTACTTATTTGAGAGGGGCACCCAATAAGTAAATTGAA
CCTTTAGGTGCTCGACTGTTAAGGACCTTTAGGTGCTCGACTGATAAGGACCTTTAGGTGCTCGA
CTGTTAAGGAGAGGAGAGGATGCGCAAGCATGCTCGACTGTTAACCCCCCAAACCAATAAGTAAA
CCCTAACCTTTAGGTGCTCGACCCAGGGTTGACTTATTGGGTGGGGCAATAAGTACCCTCACCAG
AGGAGAGGAGAGTGACCCCTAAAGAATATAGAGCCCTCCAGGGGGCTCGACTGATAAGGACCTTT
AGGTGCTCGACCCAGGGTTGACTTATTGGGTGGGGCAATAAGTAAACCCAAGAGGAGAGGACCTT
TAGGTGCTCGACTGTTAAGGACCCTTTAGGGTGCGTAAGCACGCTCGACTAATAAGGACCCTTTA
GGGGGCTCGACTGATAAGGAGAGGAGAGGGGGCTCGACTGATAAG
Right flanking sequence: Indices 712092 -- 712591
AGAGGAGAGGATGCGCAAGCAGGCTCTCAATCTAGCCCCCCCACCCAATAAGTAAATTGAACCTT
ATTCTTTTTTCATAGAATGGAATTGATAGGGGTTTACTTGGCCAACCAAGAAGGGCAGGCCCTTT
CATAAATAAAGGCCAAAAGAAATAAGGAAAAAGGCCTGCCTCCCCGGTCATTACCGTTCATCACT
TTACCACTTGATGGACAAGCCGCCCTTATCTCCTTGGCGTTCGAACTGATTGATTTACAGAAATA
ATACGCCACACAGCCAGCCCCCCCCCCCCTTCTGCTATATGGATGGATTTCTCTTTCATTGATGG
CCCATCAAGACAAGAAGTGTTTGCGCCTTATCTGTTCCCTATTTCTTTCCTCCCCTATCGCCAGC
TTTTTGTCTCGTCCCCTACCTATTCGTTTCGTTTGCCCTTTTCGTTTCCCTCATATAATTCCGCT
TTCGATACAATGAATTAGAGACTTGAAATGCCATTACTTATTCTA
Found at i:713245 original size:26 final size:26
Alignment explanation
Indices: 713216--713265 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
713206 AGCGAGAAAT
713216 CCCTCACCATATGAATAGTGAGTGAC
1 CCCTCACCATATGAATAGTGAGTGAC
713242 CCCTCACCATATGAATAGTGAGTG
1 CCCTCACCATATGAATAGTGAGTG
713266 GCTCCGCCCC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.26, G:0.20, T:0.24
Consensus pattern (26 bp):
CCCTCACCATATGAATAGTGAGTGAC
Left flanking sequence: Indices 712716 -- 713215
CCCGTACTACACAGTAATGATGAAGATCCCTCTTCTCACCGAGAATGCCGGGGATGCAGATTCGA
AGAACTAAAGAAAGGTTTCCTGGCCGATCGATCTACCTACCATTTGATTTGATCCCGTCTCGGGC
GGGGGAAAGAAGGAGCAGGCGCACCCTGCAGAAACCTCGCTTTTGCTCAATTATAAAAAGTACTT
ATTTCCTCTCCACTATATACTATAGTCGCCTGCTTGCGCTTCCTCTCCCGCTGGTCGAGCGACTA
CGTTCCTCTATTTTTGGGGCCCTACCCCTTCATAGAGTGTTCGTCCCTACGCTCCTCACCCTCAC
CCTCTGAATCAGGTGAGCGGCTCCGCCGGGGATTGGGGTGGGTGGGTAAATAGTTTCGGGAAAAT
AGAGCGAGAAATCGATGGCGGCCCGTTGGTCGAGCCATGCGTTAGCACCCTCTCCTTAGCAGTCG
AGTGTGCTAACGCACCCTCACCCATATGATGGATGAGCGAGAAAT
Right flanking sequence: Indices 713266 -- 713765
GCTCCGCCCCTATGAAGAAGTAAGGGCCCTCACCCATATGATGAGTGAGCGTTCAAACCCTCACC
CATATGATGAGTGAGCGTTCAAACCCTCACCCATATGAATGAGTGAGCGACCCCTAAATAATATA
GGGCCCTTTGGTCGATCGCCCAAAGGCGATCCTCACCGGGGATTGGGGTGGGTGGGTAAATAGTA
GGTCGGGTGAGTGGGCTTCTCGCTCCTCACCCTTCTTTTTTCGCTCTGCTCAGGTAAGGCCAAGG
TCCCGGAGGGGCTTGCGCTTCCTAGTGCAAGGAACGTAGTGCTTGCTTGACGTTAGGAAAGCAAG
GACCCGACAGGGGGCTCGACTGATAAGGATGCGCAAGCATGCTCGACTGTTAACCCCCCAAACCA
ATAAGTAAACCCTAACCTTTAGGTGCTCGACTGATAAGGACCTTTAGGTGCTCGACTGTTAAGAC
GTAAGGCAGGCTCGACTGAAACCCCCAACCAATAAAGTAAACCCT
Found at i:713378 original size:32 final size:31
Alignment explanation
Indices: 713292--713379 Score: 167
Period size: 31 Copynumber: 2.8 Consensus size: 31
713282 GAAGTAAGGG
713292 CCCTCACCCATATGATGAGTGAGCGTTCAAA
1 CCCTCACCCATATGATGAGTGAGCGTTCAAA
713323 CCCTCACCCATATGATGAGTGAGCGTTCAAA
1 CCCTCACCCATATGATGAGTGAGCGTTCAAA
713354 CCCTCACCCATATGAATGAGTGAGCG
1 CCCTCACCCATATG-ATGAGTGAGCG
713380 ACCCCTAAAT
Statistics
Matches: 56, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
31 45 0.80
32 11 0.20
ACGTcount: A:0.28, C:0.30, G:0.20, T:0.22
Consensus pattern (31 bp):
CCCTCACCCATATGATGAGTGAGCGTTCAAA
Left flanking sequence: Indices 712792 -- 713291
AAGGTTTCCTGGCCGATCGATCTACCTACCATTTGATTTGATCCCGTCTCGGGCGGGGGAAAGAA
GGAGCAGGCGCACCCTGCAGAAACCTCGCTTTTGCTCAATTATAAAAAGTACTTATTTCCTCTCC
ACTATATACTATAGTCGCCTGCTTGCGCTTCCTCTCCCGCTGGTCGAGCGACTACGTTCCTCTAT
TTTTGGGGCCCTACCCCTTCATAGAGTGTTCGTCCCTACGCTCCTCACCCTCACCCTCTGAATCA
GGTGAGCGGCTCCGCCGGGGATTGGGGTGGGTGGGTAAATAGTTTCGGGAAAATAGAGCGAGAAA
TCGATGGCGGCCCGTTGGTCGAGCCATGCGTTAGCACCCTCTCCTTAGCAGTCGAGTGTGCTAAC
GCACCCTCACCCATATGATGGATGAGCGAGAAATCCCTCACCATATGAATAGTGAGTGACCCCTC
ACCATATGAATAGTGAGTGGCTCCGCCCCTATGAAGAAGTAAGGG
Right flanking sequence: Indices 713380 -- 713879
ACCCCTAAATAATATAGGGCCCTTTGGTCGATCGCCCAAAGGCGATCCTCACCGGGGATTGGGGT
GGGTGGGTAAATAGTAGGTCGGGTGAGTGGGCTTCTCGCTCCTCACCCTTCTTTTTTCGCTCTGC
TCAGGTAAGGCCAAGGTCCCGGAGGGGCTTGCGCTTCCTAGTGCAAGGAACGTAGTGCTTGCTTG
ACGTTAGGAAAGCAAGGACCCGACAGGGGGCTCGACTGATAAGGATGCGCAAGCATGCTCGACTG
TTAACCCCCCAAACCAATAAGTAAACCCTAACCTTTAGGTGCTCGACTGATAAGGACCTTTAGGT
GCTCGACTGTTAAGACGTAAGGCAGGCTCGACTGAAACCCCCAACCAATAAAGTAAACCCTAACC
TTTAGGTGCTCGACCCAGGGTTGACTTTTGGGTGGGGCAATAAGTAAACCAGAGGAGAGGATGCG
CAAGCAGCTTCGACTTTAACTCCCAAACCAATAAGTAAATACCTA
Found at i:713704 original size:25 final size:25
Alignment explanation
Indices: 713670--713718 Score: 89
Period size: 25 Copynumber: 2.0 Consensus size: 25
713660 GTAAACCCTA
713670 ACCTTTAGGTGCTCGACTGATAAGG
1 ACCTTTAGGTGCTCGACTGATAAGG
*
713695 ACCTTTAGGTGCTCGACTGTTAAG
1 ACCTTTAGGTGCTCGACTGATAAG
713719 ACGTAAGGCA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.22, C:0.20, G:0.27, T:0.31
Consensus pattern (25 bp):
ACCTTTAGGTGCTCGACTGATAAGG
Left flanking sequence: Indices 713170 -- 713669
GAGTGTGCTAACGCACCCTCACCCATATGATGGATGAGCGAGAAATCCCTCACCATATGAATAGT
GAGTGACCCCTCACCATATGAATAGTGAGTGGCTCCGCCCCTATGAAGAAGTAAGGGCCCTCACC
CATATGATGAGTGAGCGTTCAAACCCTCACCCATATGATGAGTGAGCGTTCAAACCCTCACCCAT
ATGAATGAGTGAGCGACCCCTAAATAATATAGGGCCCTTTGGTCGATCGCCCAAAGGCGATCCTC
ACCGGGGATTGGGGTGGGTGGGTAAATAGTAGGTCGGGTGAGTGGGCTTCTCGCTCCTCACCCTT
CTTTTTTCGCTCTGCTCAGGTAAGGCCAAGGTCCCGGAGGGGCTTGCGCTTCCTAGTGCAAGGAA
CGTAGTGCTTGCTTGACGTTAGGAAAGCAAGGACCCGACAGGGGGCTCGACTGATAAGGATGCGC
AAGCATGCTCGACTGTTAACCCCCCAAACCAATAAGTAAACCCTA
Right flanking sequence: Indices 713719 -- 714218
ACGTAAGGCAGGCTCGACTGAAACCCCCAACCAATAAAGTAAACCCTAACCTTTAGGTGCTCGAC
CCAGGGTTGACTTTTGGGTGGGGCAATAAGTAAACCAGAGGAGAGGATGCGCAAGCAGCTTCGAC
TTTAACTCCCAAACCAATAAGTAAATACCTAACCTAGGTGCCCGACCATAAAGGTCGTAGCAGGC
TCTCGACTGATAAGGACCCCACCCATATAATAGTGAGTGACCCCTAAGAAATAGGGCCTTTAGGG
GGCTCGGACTGATAAGGACCTTAGGTGCTCGACCAGGGTTGACTTATTGGGTGGGGCAATAATGT
AAACCCAAGAGGAGAGGACCTTAGGTGCCTCGAACCATACGGACACTTTAGGTGCTCCGAGCTTA
AGGGAGAGGGAGAGGAATGCGTAAAGCAGGCTCGAACTGATAAGGACCCTCAACCTATGAAAGTG
AGTGAACCCTAAAGAATAATAAGGGCCCTTTAGGGGGCTCGACTG
Found at i:714754 original size:27 final size:25
Alignment explanation
Indices: 714724--714781 Score: 89
Period size: 27 Copynumber: 2.2 Consensus size: 25
714714 ACGTTAGTGA
714724 CTCGACTGATAAGGACCCTTTAGGGGG
1 CTCGACTGATAAGGA-CCTTTA-GGGG
*
714751 CTCGACTGATAAGGACCTTTAGGTG
1 CTCGACTGATAAGGACCTTTAGGGG
714776 CTCGAC
1 CTCGAC
714782 CCAGGGTTGA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
25 9 0.30
26 6 0.20
27 15 0.50
ACGTcount: A:0.22, C:0.24, G:0.29, T:0.24
Consensus pattern (25 bp):
CTCGACTGATAAGGACCTTTAGGGG
Left flanking sequence: Indices 714224 -- 714723
ACCTTTTAGGTGCTTCGACCAGGGTTGACTTATTGGGTGGGGCAATAAGTAAACCCAAGAGGAGA
AGGACCTTTAGGTGCTCCGACCTAAGGGATATCGATCGACCATAAGGGCCGCCAATCGCCGCCAA
TCGAGAAGGAGAGGAGAGGCCCGGCAGGGTGAGGTACGAAACGCTCGACTAATAAGCCGCCATCG
CTCGACCAGCGCTAGTTACTTATTTGAGAGGGGCCCACCCAATAAGTAATTGAAATGGATTGCTT
GCTCGACCCAATCAAAGTGGGGCAAGGACGTAAAGCACGCTCGACTGTCAGGAGAGGACGGAGTC
ACTCACTCATTCATATCCCACCACCCAATAAGCATCAAGGTACGTTAGTGACTCGACTGATAAGG
AACCCTTTAGGGGTCCGACTGATAAGGACTATTAGGTGCTCGCACCCAGGGTTGACTTATGGGTG
GGCAATAAGAACCCAAGAGGAGAAAGCATCAAGGTACGTTAGTGA
Right flanking sequence: Indices 714782 -- 715281
CCAGGGTTGACTTATTGGGTGGGGCAATAAGTAAACCCAAGAGGAGAGGTACGTTAGTGACTCGA
CTGATAAGGACCCTTTAGGGGGCTCGACTGATAAGGAGAGGAGAGGTACGCACGCTCTCAATTAA
GGAGAGGGTTTGAACGCTCACTCATCATATGGGTGAGGGCCCCGGAGCGAAGCCGCTTGTCCGCA
TCGGGCAAGGTCCTTTCAGGACCTTTGATGAGGATTTGTAGCATCATTCGGGTAAATACAAATTG
AGATTGTAGAAACATGAGCTTGTGATATAGCAACACCTAATTCCGAACCGGTCGGTGCAAAAACT
ATTGATAGAGGACCCGGATCTCCTATGGAATACATAATATTATTCATACATGGCATAGTCCGAGC
GAACCCACTTGGGATCTTTACTGAACTATGACCAGCCATCATATTAGCGGATAAACGTATTCCTA
AGCTTGATGCGCGGAAACAATGAGGGATTAGCTCAAGGAGTACTA
Found at i:714801 original size:124 final size:123
Alignment explanation
Indices: 714578--714883 Score: 463
Period size: 124 Copynumber: 2.5 Consensus size: 123
714568 ACCACCCAAT
*
714578 AAGCATCAAGGTACGTTAGTGACTCGACTGATAAGGAACCCTTTAGGGGTC-CGACTGATAAGGA
1 AAGCATCAAGGTACGTTAGTGACTCGACTGATAAGG-ACCCTTTAGGGGGCTCGACTGATAAGGA
714642 CTATTAGGTGCTCGCACCCAGGGTTGACTTATGGGT-GGGCAATAAG-AACCCAAGAGGAG
65 CTATTAGGTGCTCGCACCCAGGGTTGACTTATGGGTGGGGCAATAAGAAACCCAAGA-G-G
714701 AAAGCATCAAGGTACGTTAGTGACTCGACTGATAAGGACCCTTTAGGGGGCTCGACTGATAAGGA
1 -AAGCATCAAGGTACGTTAGTGACTCGACTGATAAGGACCCTTTAGGGGGCTCGACTGATAAGGA
714766 CCT-TTAGGTGCTCG-ACCCAGGGTTGACTTATTGGGTGGGGCAATAAGTAAACCCAAGAGG
65 -CTATTAGGTGCTCGCACCCAGGGTTGACTTA-TGGGTGGGGCAATAAG-AAACCCAAGAGG
714826 -AG-----AGGTACGTTAGTGACTCGACTGATAAGGACCCTTTAGGGGGCTCGACTGATAAGGA
1 AAGCATCAAGGTACGTTAGTGACTCGACTGATAAGGACCCTTTAGGGGGCTCGACTGATAAGGA
714884 GAGGAGAGGT
Statistics
Matches: 175, Mismatches: 1, Indels: 18
0.90 0.01 0.09
Matches are distributed among these distances:
118 56 0.32
123 31 0.18
124 65 0.37
125 13 0.07
126 1 0.01
127 9 0.05
ACGTcount: A:0.28, C:0.19, G:0.31, T:0.22
Consensus pattern (123 bp):
AAGCATCAAGGTACGTTAGTGACTCGACTGATAAGGACCCTTTAGGGGGCTCGACTGATAAGGAC
TATTAGGTGCTCGCACCCAGGGTTGACTTATGGGTGGGGCAATAAGAAACCCAAGAGG
Left flanking sequence: Indices 714078 -- 714577
CCATACGGACACTTTAGGTGCTCCGAGCTTAAGGGAGAGGGAGAGGAATGCGTAAAGCAGGCTCG
AACTGATAAGGACCCTCAACCTATGAAAGTGAGTGAACCCTAAAGAATAATAAGGGCCCTTTAGG
GGGCTCGACTGATAAGACCTTTTAGGTGCTTCGACCAGGGTTGACTTATTGGGTGGGGCAATAAG
TAAACCCAAGAGGAGAAGGACCTTTAGGTGCTCCGACCTAAGGGATATCGATCGACCATAAGGGC
CGCCAATCGCCGCCAATCGAGAAGGAGAGGAGAGGCCCGGCAGGGTGAGGTACGAAACGCTCGAC
TAATAAGCCGCCATCGCTCGACCAGCGCTAGTTACTTATTTGAGAGGGGCCCACCCAATAAGTAA
TTGAAATGGATTGCTTGCTCGACCCAATCAAAGTGGGGCAAGGACGTAAAGCACGCTCGACTGTC
AGGAGAGGACGGAGTCACTCACTCATTCATATCCCACCACCCAAT
Right flanking sequence: Indices 714884 -- 715383
GAGGAGAGGTACGCACGCTCTCAATTAAGGAGAGGGTTTGAACGCTCACTCATCATATGGGTGAG
GGCCCCGGAGCGAAGCCGCTTGTCCGCATCGGGCAAGGTCCTTTCAGGACCTTTGATGAGGATTT
GTAGCATCATTCGGGTAAATACAAATTGAGATTGTAGAAACATGAGCTTGTGATATAGCAACACC
TAATTCCGAACCGGTCGGTGCAAAAACTATTGATAGAGGACCCGGATCTCCTATGGAATACATAA
TATTATTCATACATGGCATAGTCCGAGCGAACCCACTTGGGATCTTTACTGAACTATGACCAGCC
ATCATATTAGCGGATAAACGTATTCCTAAGCTTGATGCGCGGAAACAATGAGGGATTAGCTCAAG
GAGTACTAAGAAAGGTGCTAACGGCAGTGGTACTCCTGCGGGTGATGAGAAGCTGGAAAAATGAA
GCCCATTTATTTGAGATCCCACTATAGTAATTCCAATAGAAATCG
Found at i:718704 original size:88 final size:88
Alignment explanation
Indices: 718555--718753 Score: 380
Period size: 88 Copynumber: 2.3 Consensus size: 88
718545 GGGGCGGAGC
**
718555 CACTCACTATTCCGATGGTGAGGGTGCGTAAGCACACTCGACTGCCTTTGGTTACTTATTTGAGA
1 CACTCACTATTCATATGGTGAGGGTGCGTAAGCACACTCGACTGCCTTTGGTTACTTATTTGAGA
718620 GGAGGGGAGAGGGTGCGTTAGCA
66 GGAGGGGAGAGGGTGCGTTAGCA
718643 CACTCACTATTCATATGGTGAGGGTGCGTAAGCACACTCGACTGCCTTTGGTTACTTATTTGAGA
1 CACTCACTATTCATATGGTGAGGGTGCGTAAGCACACTCGACTGCCTTTGGTTACTTATTTGAGA
718708 GGAGGGGAGAGGGTGCGTTAGCA
66 GGAGGGGAGAGGGTGCGTTAGCA
718731 CACTCACTATTCATATGGTGAGG
1 CACTCACTATTCATATGGTGAGG
718754 ACCGGTAGGG
Statistics
Matches: 109, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
88 109 1.00
ACGTcount: A:0.23, C:0.19, G:0.31, T:0.27
Consensus pattern (88 bp):
CACTCACTATTCATATGGTGAGGGTGCGTAAGCACACTCGACTGCCTTTGGTTACTTATTTGAGA
GGAGGGGAGAGGGTGCGTTAGCA
Left flanking sequence: Indices 718055 -- 718554
CCTTCTGACGCTACGACTTATGACGCATCCTTCTGACGAACGCAACAAGCGCTGAGCCTACGCTG
CTAAAGCTGCTTATACTTACTGAAGCTGAAGTTAATAAGCCGAAGATAGAAGGATGGAAGGACGG
AAGGATTGCTGGCTGGCGGGATCGGGATTGTTTTTCGATTGCTGGCTGGCTGGATCGCATGGGGC
TTTATCGCATGGCGGGATGGCTTGACCCCTTCTAATAAACTCCGGGGGCCGAACACTTACAGACA
GACAGAAGGCAGGCAGGCAGGGCAGGATGGATGGTGCTAACGGTTCGAAAACAACAACACCGAGA
GAGAAGACTGAAGGGGATACAGGACAGGAAAGGGGGAGCAATATCCAACAAGAAAGACAGGTGGG
GTTTTAGAGGATAAGCTCCTTCCTCAAGCTCCTCCTGCTCCTACAGCTACTTCCTCAAGCTACTT
CATTAGGCCTAGAGAACAGGGCCCTATATTCTTTAGGGGCGGAGC
Right flanking sequence: Indices 718754 -- 719253
ACCGGTAGGGGCTCGACTGTCAAGGACCCTTTAGGGGGCTCGACTGATAAGGAGAGGAGAGGGGT
CACTCACTATTCATATGGTGAGGGATCCATCTCGTTCAAAATAATAACACCCTTTACACTTGGAT
ACAGGGAGAATCATCTGGCTTTGAGCTGATTGGGTTAGACCCAGAGTGACCTACTTACGATACAT
GAAAGGGTTCTTTGTGTTTTGCTGCTATGTTTTGGTTGTGCTATTGTTTGGTGTTGTCGAAGAAA
GAATGAAAGGTGGAAGATAAGACGGATAAGACTGAGAAGAAGGCTGATCAGGATTGATGAATGGT
TTGATTGTTTTCTTTAGGAGGACACATCATACTTGTTTAGGCTTTACGGGAACCCCTTTTATATC
GATTGATTACTGCCTTTCGATTACTTCCTTTTCACCAACCATACAGGGATATCTTTAATAACCTC
TTACCAACCTATTTGTTTCTATATTTACCTTTCTTTAGTCATTTG
Found at i:719910 original size:14 final size:14
Alignment explanation
Indices: 719891--719917 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
719881 AACCACCATC
719891 ATTGGATCATAGCA
1 ATTGGATCATAGCA
719905 ATTGGATCATAGC
1 ATTGGATCATAGC
719918 CGTCCCATCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.33, C:0.15, G:0.22, T:0.30
Consensus pattern (14 bp):
ATTGGATCATAGCA
Left flanking sequence: Indices 719391 -- 719890
TTTATAGACTTCTATGAACACATAGAGCTATATTTAATTACTTACGATGATACTAACCACCTAAT
ACTTATTACCTTAGATCTTTAGTTATTACCTTTATGACTTTCATGAAACTGCCCGGGAAGCTCTA
ACGCTTCACCCCGTGTATTCAGGACCTCTATTCCCAGGCCTCTATCGAGCGTTAGCGGTCCTAAT
CATGCGGGCAAAGCTGTGTCGATCCTCCCTCATCATGCGGGTATCGAGGTAGCGGTCCTCATCCC
TAATCTTACCTCATAATGTATTGTGTGATCATCATCCATCGTGTCTGCACTAATTGTGTCTGCAC
TAACCTAATTGAATAGCTGCATCATCGAGTAACATCATGCATAATTGAGTATCATCATCGAGGTC
GATCAGCTGAGCAGCCCGGTGCCCACCCATCCGAATTGATTATCGGAGCCTTGTGTATTAGAGTC
AGCGAATTATAGCGGATCAGAGCCACCACCACCACAACCACCATC
Right flanking sequence: Indices 719918 -- 720417
CGTCCCATCTATTATAGGGATTCAATAATCCCATTGCCAAATAATGGCGTAGTCAATAATTATTT
GTAACTTAGGCCATCTGATTCGATTAGCGGATTAGATGCGGCATTGTATTAGAGGCATCAGATTA
GATCCATCGGATTCAATGGGGGAGCCAAGTGTATAAGATATTTGATAAGCCCATCCCTGGTGAAT
TAGCTGAGTTGCTTATCAGTCACAATTAGCCCATGGTATAGGTAATTATCGGTACCTTCCTTCTT
CCTGTGGATATCCTTCCTCTCGGTGGACACCATGATGAGTTTCTTTTCGGGTAATGGTAACCAAC
TGTGAATTGGCACTTCCGGGGGATCGCCTCTTGTCTTGAGTCCCGGCATCAAGTGAATCAAAACC
ATTCATCGAGTACACCAGCACCTGTATCGGCTAATCAAGTACTGGATTGAGTGCATTAACTCTTG
GCATTGAAACAAATACGTAAAGCCATTGGATCAATCATCAGTAGT
Found at i:720783 original size:14 final size:14
Alignment explanation
Indices: 720764--720791 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
720754 CAATGATTAT
720764 GAGGTTACACAATG
1 GAGGTTACACAATG
720778 GAGGTTACACAATG
1 GAGGTTACACAATG
720792 ATGCTTGAGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.14, G:0.29, T:0.21
Consensus pattern (14 bp):
GAGGTTACACAATG
Left flanking sequence: Indices 720264 -- 720763
GATCGCCTCTTGTCTTGAGTCCCGGCATCAAGTGAATCAAAACCATTCATCGAGTACACCAGCAC
CTGTATCGGCTAATCAAGTACTGGATTGAGTGCATTAACTCTTGGCATTGAAACAAATACGTAAA
GCCATTGGATCAATCATCAGTAGTAAGTTGCTCCCCGTCCATTTATCTACTGAATACTTCCTGGG
CCTTCTTGGGTGAGTGTAGCGGGCGGGTGTCGGTGGTGACGCTCTTCAGTGAATGATGGTTACAT
GAGATGGCTCGTATCGGGAGTGAGCTTATACCTCGATGGGACGATGATGGGTACGAAAGATGGGT
ATGAGGGGGACACTTTTCTCGTAAGATGGGTCATTTTTTTAAGCAAGCATTCTATATGTTATTAT
ACAACCAACAATTGGCTCAGCAACTTCTTAGAAATCGATAGGGAGAGAGGTCAACGATATGATCC
AAGAGTTGATGCTTGTAGTCAATGATGGTGTTTCTCAATGATTAT
Right flanking sequence: Indices 720792 -- 721291
ATGCTTGAGTATTATGTGAGCTACAAGGTTGAGCTAGATCCGCACACAAAACACACAACGTAGAG
CTATAGCCGCACACATCACACAGCAGTATTAGAATACGTGATATAAACGACATAGCATATAATAT
AATGTGCTAAAGTACAGGCAGAATTTCCACCATGTATGCATAATCTCATATATATATATATATAT
GATGAAATGAAATTGAGGGGGGGGGGTATCTCCTGAAAAGTATGTTTTTGGTAGAGAAAAAGAGA
TTTCTATTTTATGGACCTTACCTTATGGATGGAGAAAAACAACCTTACCTGGCAAGCTTCTTCGC
TAGAGTAGAAGTAAGGCCGGGAGAAGATCTTTCTTTCAGGCAAGTACTAAAGCGCAAGAGTTATG
GCTAGTACTGGCTTGCTAAGACCTCATGGCGGGTGACGGGCTATTACTATAGCTGGCAATGACTA
GAGCTTCTTTATAGAAGACACAACCAGAAGGTTCTTCGCTTACGC
Found at i:721962 original size:13 final size:13
Alignment explanation
Indices: 721944--721969 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
721934 TCATAGCTGG
721944 GCTCGGTTGGGCT
1 GCTCGGTTGGGCT
721957 GCTCGGTTGGGCT
1 GCTCGGTTGGGCT
721970 TGGTTACTCG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.00, C:0.23, G:0.46, T:0.31
Consensus pattern (13 bp):
GCTCGGTTGGGCT
Left flanking sequence: Indices 721444 -- 721943
ATAGCGTCTAGTGGGAACTACTAATAGCATATGGAACTGATAGAGCTAGAATTAGTATTAGAACT
AGAGAGATTGAACTACTGATCACCACGGCAAGATCAAGGCAAGTTTCACTCTATTTCTGCACTAC
TGACTGCTAAGGCTTCTGAACTGTCGTTCTATTGAGAACTTAGAAGTACTAACACTACTAGAGAT
CTCTAGAGAGATATATTGGAACTACTTCTCTTTCTTTTTCAAAGTACTAGCCTTAAGGTAAGGAA
GTTCCATAAGGTACTCGCTAGAAGGTCAGTTAGGTTTCTCCATCCATAAAGTACTAGCCATAAGT
TATTAAGGTAAGTTCCTAAAGGTATAGCCATAAGGTCATTGCCACCAATAGCCACTCATTGCCAA
TCATAGGCAGTGCTCATTGCTGATAGCCGGCGCTCAATGCCAGGATTCTTAGTCGATCTCAGGAG
TCGATGCTGGTAGTTGATGCTGCAGTCGATGCCAGTCATAGCTGG
Right flanking sequence: Indices 721970 -- 722469
TGGTTACTCGGATACTACTCAACGGGGCTACCCAAATTGGCTTGGCTTTGATACCCGGCTACTCA
GATTGGCTTAACAGTTCGGAACAATTGAAGAAATGAAAATGCATTACTTACTATGTACCTCAAGA
TCATCAACAGACACACGGTTGAATTAATGCTAGGAAGGGAATAATGCCAGTCAGGAAAGTGGCTT
GGTGGTGTGTTGCCCGGATAGTGATTGATCAAAGGGCCATTATTATGAAAGGGGCCAGTCTTCCG
AGAGAGAGGGGATTTATCCGTTCTCCCGAGGAAGGAGGGAGAGGGGTGAGGTACGAACTCCCCCT
CCCGAGGATGGTCGGGGGAGGGGCGCATAAATGGATGCTGGCCAACAGACGGGAAGGCATTGATT
TCTTTATTGACTTGAGAACTTCTTCCGAGAGAAGCGTTCCAACCACTGCCCCTTCTTACAAGATA
GGCGTAACAACGGACATAGAAAGCATCTTCACAAAGAAAGCATCT
Found at i:722516 original size:15 final size:15
Alignment explanation
Indices: 722496--722525 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
722486 CAACAGCAGA
722496 ACAATTAAGAATAGC
1 ACAATTAAGAATAGC
722511 ACAATTAAGAATAGC
1 ACAATTAAGAATAGC
722526 CTGGAGACCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.53, C:0.13, G:0.13, T:0.20
Consensus pattern (15 bp):
ACAATTAAGAATAGC
Left flanking sequence: Indices 721996 -- 722495
GCTACCCAAATTGGCTTGGCTTTGATACCCGGCTACTCAGATTGGCTTAACAGTTCGGAACAATT
GAAGAAATGAAAATGCATTACTTACTATGTACCTCAAGATCATCAACAGACACACGGTTGAATTA
ATGCTAGGAAGGGAATAATGCCAGTCAGGAAAGTGGCTTGGTGGTGTGTTGCCCGGATAGTGATT
GATCAAAGGGCCATTATTATGAAAGGGGCCAGTCTTCCGAGAGAGAGGGGATTTATCCGTTCTCC
CGAGGAAGGAGGGAGAGGGGTGAGGTACGAACTCCCCCTCCCGAGGATGGTCGGGGGAGGGGCGC
ATAAATGGATGCTGGCCAACAGACGGGAAGGCATTGATTTCTTTATTGACTTGAGAACTTCTTCC
GAGAGAAGCGTTCCAACCACTGCCCCTTCTTACAAGATAGGCGTAACAACGGACATAGAAAGCAT
CTTCACAAAGAAAGCATCTTCAAAAATAGGCGTCCCAACAGCAGA
Right flanking sequence: Indices 722526 -- 723025
CTGGAGACCTTACCAATGGGCTAAGAGAGTCTATTAAGGCTAAGGGACTCCATCCATAGGCTTTC
ACTTACGGCTTTCACTCGATACTGTCTACACCAGAGGGAATACTCTTAAGCATACTCTTAAGCTA
AGAGTCTTTACTCATTTATGCTCACGGGTATGCACTTCAAATCACCCCCATTCCAAGTTGACAAC
AGACAAGTAGTGAGATGTTACCCATCAATCAATGTTTCACTTTTCCTTTCCCTTACGGTCAAGCG
GCCTTACGGCACCTTTGTCATTTGTAACTCTTAAAGTGTCCCGTAAGGTAGTGTGTTTCCATAGA
ACCGACTATCAAGAAGAAATAGATGCTGGTACTTTATACCAGGAGTCAATGTCTTTCTTTCATCT
TTTTGATCTTTCCTTTCTCTCTATTTCTTCCCCATAATCCACAACTCCTGTCTAAGTATAATGGA
TGAAATCAAAAAGGGTAATCCTCAAATCTGCTAATCCAATGGGAG
Found at i:723419 original size:26 final size:26
Alignment explanation
Indices: 723383--723432 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
723373 GGGGCGGAGC
723383 CACTCACTATTCATATGGTGAGGGGT
1 CACTCACTATTCATATGGTGAGGGGT
723409 CACTCACTATTCATATGGTGAGGG
1 CACTCACTATTCATATGGTGAGGG
723433 ATTTCTCGCT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.24, C:0.20, G:0.26, T:0.30
Consensus pattern (26 bp):
CACTCACTATTCATATGGTGAGGGGT
Left flanking sequence: Indices 722883 -- 723382
TTTATACCAGGAGTCAATGTCTTTCTTTCATCTTTTTGATCTTTCCTTTCTCTCTATTTCTTCCC
CATAATCCACAACTCCTGTCTAAGTATAATGGATGAAATCAAAAAGGGTAATCCTCAAATCTGCT
AATCCAATGGGAGGAATCAGCAAGGAGAATAATCAATGCGAATAATCCAAATCAATGGGGAATAA
ACCAGGGGAACTCTAATCCGCTATAATCCGCATAGAAGTGAAGTCTACGTGAAACTAATTGAAGT
GATATCAAGGGGGGGCCACTTCTTCATGCCTCTGGAAAACCACTGTTTCATATAGAATCTATTTC
CGGAATTCCGCTACTAGCAAGAGTATGAAAATAGCATATATTATATATGTCATTACCGGTGGAGC
TTGGAGCCGAGGGAGGCATTTCAGAATCCATGAAGTCGACCTGCCTCAGAGAAAGGGCTTTCAAA
GCTCCCGCTTTCAAGGGCCCTATATTTCTTACTTAGGGGCGGAGC
Right flanking sequence: Indices 723433 -- 723932
ATTTCTCGCTCTATTTTCCCAAAATAGAGGGATTTCTCGCTCATCCATCATATGGGTGAGGGCCC
TTACTTCTTAGGGGTCACTCACTCATTCCGATGGGTGAGGACCGGTAGGGGCTCGACTGTCAAGG
ATGCGCAAGCAGGCTCGACTGTTAACCCCCCAAACCAATAAGTAAACCCTAACCTTTAGGTGCTC
GACCCTAAGGATGCGTAAGCAGGCTCGACTGATAAGGACCCTCACCATATGAATAGTGAGTGACC
CCTAAAGAATATAGGGCCCTTTAGGGGGCTCGACTGATAAGGACCTTTAGGTGCTCGACCCAGGG
TTGACTTATTGGGTGGGGCAATAAGTAAACCCAAGAGGAGAGGACCTTTAGGTGCTCGACCTTAA
GGGATTTATCGCTCGACCATAAGGGCCGCCATCGCCGCCATCGAGAGGAGAGGAGAGGGCCGGTA
GGCGCTCACCATTCCGATGGTGAGGGTTTTAACGCTCACTCATCA
Found at i:728095 original size:53 final size:53
Alignment explanation
Indices: 728014--728119 Score: 196
Period size: 53 Copynumber: 2.0 Consensus size: 53
728004 GGAACAAACT
728014 TTAGTTACTTATTTGAGAGGGGCCACCCAATAAGTCAAATGAAGGATGGCGAAG
1 TTAGTTACTTATTTGAGAGGGGCCACCCAATAAGTCAAATGAAGGAT-GCGAAG
728068 TTAGTTACTTATTT-AGAGGGGCCACCCAATAAGTCAAATGAAGGATGCGAAG
1 TTAGTTACTTATTTGAGAGGGGCCACCCAATAAGTCAAATGAAGGATGCGAAG
728120 AACCAAAGGG
Statistics
Matches: 52, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
52 6 0.12
53 32 0.62
54 14 0.27
ACGTcount: A:0.34, C:0.15, G:0.26, T:0.25
Consensus pattern (53 bp):
TTAGTTACTTATTTGAGAGGGGCCACCCAATAAGTCAAATGAAGGATGCGAAG
Left flanking sequence: Indices 727514 -- 728013
TGATTTATAAGGTGCTGCATAGTCATTTACACATTTTCTGATTATGTAGCAACTCAATCTCATGT
GTACAGGGATTTCTGTTTGAAATCGGGGATAGTTTCTAGTCGAAGTGTAAGATCGCTTTGAACAT
AGACGTCAGCACCCCAGGGTTTTTGGTCCCTAACAGCAAAAAAGAGAAGCATTGAAATCGAATGG
AGTGGCGAACACCATGAAACCAAGTTGTGGACCTGGCTTTGGTGTAGCGAACACTTTCCTCAGCT
GCCTCGTTCGGATCAATCCATCCTTCTTATTCTAATAATATAGTGCAGGGGCGCAGATTGGGGCA
CAGCTTACTTCATTGAACGCCTTTTCTTTCTGGGCTAAAGTAGTGGTGGATTAGTGTTATGGAGT
GGGCGTCTTTTGGGGTATCGGGTTAATGTAGACCAAGAACACCAACAATCTTGACGCATCCATAA
GGTTATCCCCTTCTAGCTCAGCTCAGGCTTTTAGGGGAACAAACT
Right flanking sequence: Indices 728120 -- 728619
AACCAAAGGGAGAGGAAGGAATACGATTGAATAAATCAGAACGGAAGTGTACGATTCAAATCGAC
GGAAGCGTATGAACGGAACCGTACGATTTCAATTAGAACGGAAGCGGATGAACTAATCAAACTCT
TTATTGAACTACAGCGTCAGAACTACTGTTTTTCCTTGCCCCCCGGAGGGAACAAGCGGCTTCGC
ACCTTTTGTTATGACGACCATTTATGCTAGTCATTGCTTGAAGGTCAGCGTCACTCATAGCCTTT
TCTCATTTTTGATAGCCGCTAGTCTATACAGACACATAGTGAGTGCTAGTCTCCGGTAGTGCCAG
TATGGGAAGGCAGGTAGCCGATGCTTTATAGTAATTGATTGAGGGCCTACTCAACCTACAAATCA
CTTACCCTACGGAACAGGAGTTGCAATTTGATGGAGTATGCGTTACATACGATGCACCTGTTGAA
GATCAGACCGTAGCAGTCATAGCCGATTGACAATCATTGACAGTT
Found at i:728199 original size:37 final size:39
Alignment explanation
Indices: 728158--728237 Score: 101
Period size: 39 Copynumber: 2.1 Consensus size: 39
728148 GAATAAATCA
** * *
728158 GAACGGAAGTGTACGA-TTCAAATCG-ACGGAAGCGTAT
1 GAACGGAACCGTACGATTTCAAATAGAACGGAAGCGGAT
*
728195 GAACGGAACCGTACGATTTCAATTAGAACGGAAGCGGAT
1 GAACGGAACCGTACGATTTCAAATAGAACGGAAGCGGAT
728234 GAAC
1 GAAC
728238 TAATCAAACT
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
37 14 0.39
38 7 0.19
39 15 0.42
ACGTcount: A:0.36, C:0.17, G:0.29, T:0.17
Consensus pattern (39 bp):
GAACGGAACCGTACGATTTCAAATAGAACGGAAGCGGAT
Left flanking sequence: Indices 727658 -- 728157
CAGGGTTTTTGGTCCCTAACAGCAAAAAAGAGAAGCATTGAAATCGAATGGAGTGGCGAACACCA
TGAAACCAAGTTGTGGACCTGGCTTTGGTGTAGCGAACACTTTCCTCAGCTGCCTCGTTCGGATC
AATCCATCCTTCTTATTCTAATAATATAGTGCAGGGGCGCAGATTGGGGCACAGCTTACTTCATT
GAACGCCTTTTCTTTCTGGGCTAAAGTAGTGGTGGATTAGTGTTATGGAGTGGGCGTCTTTTGGG
GTATCGGGTTAATGTAGACCAAGAACACCAACAATCTTGACGCATCCATAAGGTTATCCCCTTCT
AGCTCAGCTCAGGCTTTTAGGGGAACAAACTTTAGTTACTTATTTGAGAGGGGCCACCCAATAAG
TCAAATGAAGGATGGCGAAGTTAGTTACTTATTTAGAGGGGCCACCCAATAAGTCAAATGAAGGA
TGCGAAGAACCAAAGGGAGAGGAAGGAATACGATTGAATAAATCA
Right flanking sequence: Indices 728238 -- 728737
TAATCAAACTCTTTATTGAACTACAGCGTCAGAACTACTGTTTTTCCTTGCCCCCCGGAGGGAAC
AAGCGGCTTCGCACCTTTTGTTATGACGACCATTTATGCTAGTCATTGCTTGAAGGTCAGCGTCA
CTCATAGCCTTTTCTCATTTTTGATAGCCGCTAGTCTATACAGACACATAGTGAGTGCTAGTCTC
CGGTAGTGCCAGTATGGGAAGGCAGGTAGCCGATGCTTTATAGTAATTGATTGAGGGCCTACTCA
ACCTACAAATCACTTACCCTACGGAACAGGAGTTGCAATTTGATGGAGTATGCGTTACATACGAT
GCACCTGTTGAAGATCAGACCGTAGCAGTCATAGCCGATTGACAATCATTGACAGTTATCATTGT
CAATAGCCAGTTCTCATTGCCGAGAGACGCCAGTCATAGTCCCCAGTCAGAGCCAGTTCTCATCG
TCAGAAGGTCATCTTATAGCCTGTCAGCGCCAATCAGCCAATAGT
Found at i:729666 original size:24 final size:25
Alignment explanation
Indices: 729634--729706 Score: 112
Period size: 26 Copynumber: 2.9 Consensus size: 25
729624 ATACTGATTG
*
729634 TCTTCCGAG-AGGGGCGCACAGCCT
1 TCTTACGAGAAGGGGCGCACAGCCT
729658 TCTTACGAGAAAGGGGCGCACAGCCT
1 TCTTACGAG-AAGGGGCGCACAGCCT
729684 TCTTACGAGAAAGGGGCGCACAG
1 TCTTACGAG-AAGGGGCGCACAG
729707 ACGCACAGTC
Statistics
Matches: 46, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
24 8 0.17
26 38 0.83
ACGTcount: A:0.25, C:0.27, G:0.33, T:0.15
Consensus pattern (25 bp):
TCTTACGAGAAGGGGCGCACAGCCT
Left flanking sequence: Indices 729134 -- 729633
CACGAACAATGCATTACTTACGATGCACCTGTTGAAGATCATACGCGCAAAGGAAAGGTCATCAG
GGAAGGGGATAGGATTATTCCGGGAGGGGAGGTTGGTTTAGACATTAGACACAGGGAAAGGTCAG
GTTGAGCCATTGTTAGTTCTCATTGACGATAGCCCATAGTTGAGGCCAGGAGTCAATGTCTTCTT
GTAGATTTTGGAACCGATAGAGACACAATGCTTACTTACAATGCACCTGTTTAGAATCATCCCCA
GACACATAGTTGCATTCACCCTAGGAAGGGAATGACACTCAGGGAGATGACTGATCGGATAGTGA
TTCATTGATTGCATTGATTGATTCAGAGGAGTCCCCAGTGGCCCAACGGGCAACAGACAACAGAG
GGGTGGCCCAATTGATTGATTTATTGCATTGATTGCCCATATCTACACAGAGAGGCGATTCAACG
GAAGTGACTGATGCTTTATAGTTATTGATTGATCGATACTGATTG
Right flanking sequence: Indices 729707 -- 730206
ACGCACAGTCTTCTGATATGGGTACACCAACTGAATATCTTCTGAGAGCAGGGCCCAATTAGTCT
TACGGGCGGCCTCGGTGCATTTACTGGAGAGGTATTCTCGTTATATATGATTCACCCATTGAGGG
ATCATACGCAATGGAAGGGTCATCAGGGGGGGGATATAGTCTTCAGGGAGGGGAGGTAGTTTGAG
CTATTCATGCTTGTTAGGTAGTGGCATTCACGCAGGTCGGGTAGTGCCGTGCCAGAGAAGTGCGT
GATGTAGTCTCTGTTTGAAGTGCACCCATTACCCTAACTCCTTATCCACCCAGTCCATGTTTCCG
ATAGAAGGCCCCTTTCAAGCCACCTTACCCGATAGAGAGTGAGTGAGGTCCCCCATGTTCCCAAC
TGATGAGGTGAGATACCCCATCGTTCCCACCATACATGAGAGAGGAGAAGGACACCATTGTTACC
ACCTGATGACATTGAGCCCTTTTGTTTTCAGATAAGCATTTTGGC
Found at i:729677 original size:26 final size:26
Alignment explanation
Indices: 729643--729706 Score: 128
Period size: 26 Copynumber: 2.5 Consensus size: 26
729633 GTCTTCCGAG
729643 AGGGGCGCACAGCCTTCTTACGAGAA
1 AGGGGCGCACAGCCTTCTTACGAGAA
729669 AGGGGCGCACAGCCTTCTTACGAGAA
1 AGGGGCGCACAGCCTTCTTACGAGAA
729695 AGGGGCGCACAG
1 AGGGGCGCACAG
729707 ACGCACAGTC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 38 1.00
ACGTcount: A:0.27, C:0.27, G:0.34, T:0.12
Consensus pattern (26 bp):
AGGGGCGCACAGCCTTCTTACGAGAA
Left flanking sequence: Indices 729143 -- 729642
TGCATTACTTACGATGCACCTGTTGAAGATCATACGCGCAAAGGAAAGGTCATCAGGGAAGGGGA
TAGGATTATTCCGGGAGGGGAGGTTGGTTTAGACATTAGACACAGGGAAAGGTCAGGTTGAGCCA
TTGTTAGTTCTCATTGACGATAGCCCATAGTTGAGGCCAGGAGTCAATGTCTTCTTGTAGATTTT
GGAACCGATAGAGACACAATGCTTACTTACAATGCACCTGTTTAGAATCATCCCCAGACACATAG
TTGCATTCACCCTAGGAAGGGAATGACACTCAGGGAGATGACTGATCGGATAGTGATTCATTGAT
TGCATTGATTGATTCAGAGGAGTCCCCAGTGGCCCAACGGGCAACAGACAACAGAGGGGTGGCCC
AATTGATTGATTTATTGCATTGATTGCCCATATCTACACAGAGAGGCGATTCAACGGAAGTGACT
GATGCTTTATAGTTATTGATTGATCGATACTGATTGTCTTCCGAG
Right flanking sequence: Indices 729707 -- 730206
ACGCACAGTCTTCTGATATGGGTACACCAACTGAATATCTTCTGAGAGCAGGGCCCAATTAGTCT
TACGGGCGGCCTCGGTGCATTTACTGGAGAGGTATTCTCGTTATATATGATTCACCCATTGAGGG
ATCATACGCAATGGAAGGGTCATCAGGGGGGGGATATAGTCTTCAGGGAGGGGAGGTAGTTTGAG
CTATTCATGCTTGTTAGGTAGTGGCATTCACGCAGGTCGGGTAGTGCCGTGCCAGAGAAGTGCGT
GATGTAGTCTCTGTTTGAAGTGCACCCATTACCCTAACTCCTTATCCACCCAGTCCATGTTTCCG
ATAGAAGGCCCCTTTCAAGCCACCTTACCCGATAGAGAGTGAGTGAGGTCCCCCATGTTCCCAAC
TGATGAGGTGAGATACCCCATCGTTCCCACCATACATGAGAGAGGAGAAGGACACCATTGTTACC
ACCTGATGACATTGAGCCCTTTTGTTTTCAGATAAGCATTTTGGC
Found at i:730406 original size:17 final size:17
Alignment explanation
Indices: 730384--730433 Score: 82
Period size: 17 Copynumber: 2.9 Consensus size: 17
730374 GCCGCTGATA
730384 GTCACCCATAGCCAGTG
1 GTCACCCATAGCCAGTG
*
730401 GTCACCCATAGCCGGTG
1 GTCACCCATAGCCAGTG
*
730418 GTCACCCATAGACAGT
1 GTCACCCATAGCCAGT
730434 CATTGTAGTA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 30 1.00
ACGTcount: A:0.24, C:0.34, G:0.24, T:0.18
Consensus pattern (17 bp):
GTCACCCATAGCCAGTG
Left flanking sequence: Indices 729884 -- 730383
GAGGGGAGGTAGTTTGAGCTATTCATGCTTGTTAGGTAGTGGCATTCACGCAGGTCGGGTAGTGC
CGTGCCAGAGAAGTGCGTGATGTAGTCTCTGTTTGAAGTGCACCCATTACCCTAACTCCTTATCC
ACCCAGTCCATGTTTCCGATAGAAGGCCCCTTTCAAGCCACCTTACCCGATAGAGAGTGAGTGAG
GTCCCCCATGTTCCCAACTGATGAGGTGAGATACCCCATCGTTCCCACCATACATGAGAGAGGAG
AAGGACACCATTGTTACCACCTGATGACATTGAGCCCTTTTGTTTTCAGATAAGCATTTTGGCTG
CTCGGGCTACTTGGCTTGGCTACCGGGCTGGGATGGAAACAGTCGTTGCCTAGAATCTCAAATAT
GATATTGATTCCCCTCAAAAAATATCATAGCCATAAGCCAGTCAGAACTAGAAGGTCCTTACTAG
AAGGTCATTTACAAAACCAGTAGCCAGTGGTCATAGCCGCTGATA
Right flanking sequence: Indices 730434 -- 730933
CATTGTAGTAAGCCGGTCATAGCTGGGCTGGGATACTCTCCTTGGCTAATCGACTTGGTCACTCT
ACTCAGCTACTCTACTTGGTTACTCAGCTCGGATAACGGAAAGGACAACCATATACAAAAGGAGG
CTACGTGATTTTCTAGATTCAACATGTATGGAAGGAGGTACTTGTGCTGGTCATTATATATTGAC
CTTTTCTATTTCACACGTGCCAGCGAGTGGTTAGTTTGAGGTGAGTTTGTTAGCTTTGTTAGTAC
GTAAGGCCGTGGTGCTTGGCTTATTCTTTTGGGTTTTGTGTTTTCACGTATATAATGTAATTAAG
AAGTTGTGTTAGTACGGTATGGAACAATGGCATGTTCCTAACTGGAGGACTGGATGCAATGAAAA
ACTTGACGGGGATTGATTGCTTGCTGGCTAGACCCCACCACCCCGTGAGGCTAGACCCGATGATT
ATGCTTCGCGATACAATACCACCGAATCGGAGAACTGATCGATTT
Found at i:739172 original size:16 final size:15
Alignment explanation
Indices: 739146--739177 Score: 55
Period size: 16 Copynumber: 2.1 Consensus size: 15
739136 CCCAATAGGA
739146 AACTACATTACTATC
1 AACTACATTACTATC
739161 AACTATCATTACTATC
1 AACTA-CATTACTATC
739177 A
1 A
739178 TTAGCTTCCA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 5 0.31
16 11 0.69
ACGTcount: A:0.41, C:0.25, G:0.00, T:0.34
Consensus pattern (15 bp):
AACTACATTACTATC
Left flanking sequence: Indices 738646 -- 739145
AGTCGAGCCTGCTTCCGCTCCAGAGGTTGGAAATCTGACAAATTAGGAGGAAATTGGTTGAGATG
GGGGAACCTTCTCTCTTACTAATCTCACTCACTTCCTGGAAACGAACGTGGGAACAGAGAGCTCT
AGTCCACCCTTAGTAGTATGTGGTAGTAGGTATGGTGCCGAACAACCTGAGGCCATCTCAGCTAA
GGAGGTGGGCCTGGATGCAAGAGCATCCCTACAGGTAATGGGTAGATCACACCTATCCCTATTTC
AATATAAAAGTGAAACCATAGATATGCGATATCCTTCTTATATTGAAAAGGGGACACTTCTCTCA
TCATAACCTTAGGAAAGTAGTTGAGCTTTTGTAGTTAGGGATGGGATCAATATTCCATCTTCTCT
ATTGTGGGGAAATATGGATATTATCCATATATAAATCTTTCCCTACTATATCTATTCCCAATTGT
ATTAAAACCCTATATCTTTCCCATGGAAGATTATTCCCAATAGGA
Right flanking sequence: Indices 739178 -- 739677
TTAGCTTCCAAAGCTTTCAAGTAGTACTACTAGCCGCCCTACGAACAAGGAAAAGTTGAACCATT
CCTGAGGTACGAGGGAATGCACCGAAAGGTCGTATATATGCGATCTTGTATATGGTAGGCTCCAG
GAATGAACAAATCCATTTTTCTTCGCCCAGATAGATATGGTGACCTTCTTATCAAACCCAACAAA
ATGATAGGTTTTGGGAATATATCCCAACTAAACAAAAAAAGAAGGTCCGGAGGGTCTTGCGCTTC
CGAGTGCAAGGGGATATTTGCTTTTCCAAGTGTGATGTACTTAGGAAATAATGGTGCTCAGAGCT
ATCCATTTATTGAGTTCAGAAGGAATCCAGGCTCTCAAGACAGAGAGAAACATTATGATGGATTC
AACTGCTAACTAACAACCTAGCTTATTTGCTTTTTGAGAGGGTTAACTTATCATCGGTCCTCTCG
ACTAAGGATCCCCCACCTATTAATAAAATGGGACAAGGTAACCCC
Found at i:742506 original size:24 final size:24
Alignment explanation
Indices: 742474--742541 Score: 127
Period size: 24 Copynumber: 2.8 Consensus size: 24
742464 AGGAGAGGAG
742474 AGGACCTTTAGGTGCTCGACCATA
1 AGGACCTTTAGGTGCTCGACCATA
*
742498 AGGACCTTTAGGTGCTCGACCTTA
1 AGGACCTTTAGGTGCTCGACCATA
742522 AGGACCTTTAGGTGCTCGAC
1 AGGACCTTTAGGTGCTCGAC
742542 TGTTAAGGAG
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
24 43 1.00
ACGTcount: A:0.22, C:0.25, G:0.26, T:0.26
Consensus pattern (24 bp):
AGGACCTTTAGGTGCTCGACCATA
Left flanking sequence: Indices 741974 -- 742473
GCCTCTCAATCTTCGAAATCCTAACCCTAGGGAGTAATCTTACCGAACAAGGCGGTAAATCAAAA
CTTGCCCCAGAACGAGGTGGCGTTGTTTCCGCGGCATATGCACCCTGGAGGTTGCAGAAAGATAT
AGATAACGTGGAATTCAATGACAAATCAGTCAGTTAATGGTATGACAGAATAATTGAAGTCACTC
AAGAGCAAGTCCGGGTCCCCCGACATATCATAAACCATTATAAGCAGCGGCTCCAGTTCGAGGTG
ACAAGAGATAGCTGCTATATCCGACCTATCATGGAAGGCGGAAACCGGATAGAGGTTAGCCCTCT
GCCCTTCATACTAAATGAGAAGGCAGTGAAGGTCCGGAGGTCTTGCGCTTCCGAGTGCAAGGACC
CGACAGGGGGCTCGACTGATAAGGACCTTTAGGTGCTCGACTGTTAAGGATGCGCAAGCATGCTC
GACTGTTAAGGACCCTTTAGGGGGCTCGACTGATAAGGAGAGGAG
Right flanking sequence: Indices 742542 -- 743041
TGTTAAGGAGAGGGAGAGGGAGAGGAGAGGAGAGGAAGAGCGTAAAAAGCGGGATTGGTATGAAA
ACCATGGCCGCAGCACAAGGACCCGTGTTCTTGTCCCCAAAGAAGACGCTGCAACCGACATATGA
GGGTGAGTTTTATGAGGTACTCATACCGCTAGGCGCCACCCCAGGAAGAGAGCTTGCCCTAATTC
GCCCGAATAAGAGGAAAGAGGTAGAACATCGACCACAGCCCAGCCCAATCTCAGGGAAAGGCCAA
ACCTCCGGTGGCGTCAGTCCATCAAAGTCGACTTTCCCAATGCCACAGATAGTTACGACGGTCAA
AGACTCATGGACCGGTCAGGAGGTAAAAGAAGGGGTTACACAGTTGGTTTAGCTATTTACCAAGA
CGCCACTAACGAAGAAGCCTCGCACCCATCAGCCGACTCGACACACCACCCCATTGTCAAGGTGC
AGGAGATGGCTTCTGTGGTCCAGGATCTACATGCTGGTACAACCC
Found at i:744512 original size:23 final size:23
Alignment explanation
Indices: 744482--744529 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
744472 AGGTAACGAA
744482 CGCTCGACTGTTAAGGCCGCCAT
1 CGCTCGACTGTTAAGGCCGCCAT
744505 CGCTCGACTGTTAAGGCCGCCAT
1 CGCTCGACTGTTAAGGCCGCCAT
744528 CG
1 CG
744530 AGAGGAACTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.17, C:0.35, G:0.27, T:0.21
Consensus pattern (23 bp):
CGCTCGACTGTTAAGGCCGCCAT
Left flanking sequence: Indices 743982 -- 744481
TAACTAAAGTGTGGAACAGCTCTCACCGATCGGGACCGATAAGCATTGCATTGACGCACTCCACA
ACATAACGACTTCCCGCCCTGTAGCTTTATGTTGCAGGTTTTCCGTATCAGGTGAACTTGAATCA
GGGTTGCCGGGTGGTCAACGCTTTCGGTCAAATCTGCTCTGTACCCCACATGCATGCCCAACTGT
ACCCACCAGCCTTCCAAGGGGAGGGAGGTTTGGAGATGCCGAATAGATAAGAAATCACTCTCATT
ATATATGTCATTACGGAATTACCTATCTAATTCTTTGATCAATTCTTCGAGAGAACGTAGTGATT
CCAGTCATTCATTATATACGTAATTACGTCATTCGAGATATGTCATTCTGCATGAATGAATTATA
TATGTAATTACGCATCAAAACCTCCGCCTCCTGAAATGGCCAAATTAGTAGGATGCGTAAGCATG
CTCGACTAACAGGAGAGGATGCCCCCGGCAGGGTGAGGTAACGAA
Right flanking sequence: Indices 744530 -- 745029
AGAGGAACTTGAGTTGCTCGACCACCGCCCACCACCCAATAAGCATCAAGGACCGGCAACGGGGC
TCGACTGATAAGGAGAGGATGCCCCCGGCAGGGCTCGACCAACGGGAGAGGAACTTGAGTTGCTC
GACCAACGGGCCGCCATCATAGCACACTCGACTGTCAAGGAGAGGCCCGGTAGGGGCTCACCATT
CCGATGGTGAGGGATTTGGAAGCTCATCCATCATATGGGTGAGGTTGCGTTAGCACACTCGACAC
AGTGGTAGAGGAAGCGTAAGCAGGCTCAACCATAGAGACCATAAGCCCACCACCCAATAAGCATC
AAGGAAGGCAGGGCTCGACCGTAAGGACCTTTAGGTGCTCGACTGTTAAGGAGAGGGAGAGGATC
TTTTCATAACGTGAAAACGCCTGGCCCTGGCAGCAAGCATAATATCGTATACATCATATCTCGAT
ACAATCTCCCATGCTTTCCGTTGGTAAACGAATAACCGACCACCC
Found at i:751240 original size:27 final size:27
Alignment explanation
Indices: 751223--751281 Score: 82
Period size: 27 Copynumber: 2.2 Consensus size: 27
751213 AGGACCCTTT
* *
751223 AGGGGGCTCGACTGATAAGGAGAGGAG
1 AGGGGGCTCGACTGATAAGGACACGAG
* *
751250 AGGGGGCTCGACTGATAAGGAGAGGAG
1 AGGGGGCTCGACTGATAAGGACACGAG
751277 AGGGG
1 AGGGG
751282 TCACTCACTA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.29, C:0.10, G:0.51, T:0.10
Consensus pattern (27 bp):
AGGGGGCTCGACTGATAAGGACACGAG
Left flanking sequence: Indices 750723 -- 751222
TTATGTATGTAATTATGCATCGAGGAAAGAGAAGATCGAGTAAGTGAATCGGTCTACATTGATGG
TCATTCATTATATATGTCATTACGCTCGCAACCTCACTGGCATTTCTGGTGTAACGTATATAAAG
AAAAGCATTGATCTAGCTTGGTCGAGCCTCACTGGCATTTCTGGTGTAACGTATATAAAGAACCT
GCCTCTCCGCTCCTCAACATCGATTGGCCTATGCTCCTTCCCCGATGCGGGAAAGAACTAAACGT
ACCTTATGTAAGGACAGCCTTTCTTCCTCTCCCTAAGGTTGAGCCATCCTCCAGAAGTTTCATCT
ACTGGTCAGGAGCCTATGAGCCTAGAAGAAGTAACCAAGATGTGAAAATATAGGGCCCTATATTT
CTTACTTAGGGGCGGAGCCACTCACTATTCATATGGTGAGGACCGGTAGGGGCTCGACTGTCAAG
GACCCTTTAGGGTGCGTAAGCACGCTCGACTAATAAGGACCCTTT
Right flanking sequence: Indices 751282 -- 751781
TCACTCACTATTCATATGGTGAGGGAAAATTGATAGCTCGGCGAGAAGTCTTCTCTATTCTACCA
GACTTCCCTTCTGACTTGCCTACATGTTCGTAACCTTGCCTTCTTCGTACACCCTCTGGTAAGGC
TAAGCGTTCCCTACCAGCCAGAGTCAGTAGCTTGAGATTCAGTGGCTTGTGAAAACGCCCTACCC
TTTCAATCAGTAGTCAGCTCTGTAGTCAGTCTCCTCACTGGTAGGATCAGAATAGCCTCACAGGA
TCAGATGGATGTATGGCTACGCCTTCCTTCCACCTATCACTTCGATACAGATGGATGTATGGCTA
CGCCTTCCTTCCACCTATCACTTCGAACCAAAGGCTGTAATGAATGCTGCGTGCTCTTCTCTCCC
ATAGCACAAACCTACTCGTATTCTGGTCTAACTCAAGTGCTGTAGGTCAAACCCCTCTTATCTGT
CTTACCCATAGCCTCTCTTTCTTACTGCCCTATCTGTACGGTTAT
Found at i:751610 original size:46 final size:46
Alignment explanation
Indices: 751543--751632 Score: 180
Period size: 46 Copynumber: 2.0 Consensus size: 46
751533 CTCACAGGAT
751543 CAGATGGATGTATGGCTACGCCTTCCTTCCACCTATCACTTCGATA
1 CAGATGGATGTATGGCTACGCCTTCCTTCCACCTATCACTTCGATA
751589 CAGATGGATGTATGGCTACGCCTTCCTTCCACCTATCACTTCGA
1 CAGATGGATGTATGGCTACGCCTTCCTTCCACCTATCACTTCGA
751633 ACCAAAGGCT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 44 1.00
ACGTcount: A:0.21, C:0.31, G:0.18, T:0.30
Consensus pattern (46 bp):
CAGATGGATGTATGGCTACGCCTTCCTTCCACCTATCACTTCGATA
Left flanking sequence: Indices 751043 -- 751542
CATCTACTGGTCAGGAGCCTATGAGCCTAGAAGAAGTAACCAAGATGTGAAAATATAGGGCCCTA
TATTTCTTACTTAGGGGCGGAGCCACTCACTATTCATATGGTGAGGACCGGTAGGGGCTCGACTG
TCAAGGACCCTTTAGGGTGCGTAAGCACGCTCGACTAATAAGGACCCTTTAGGGGGCTCGACTGA
TAAGGAGAGGAGAGGGGGCTCGACTGATAAGGAGAGGAGAGGGGTCACTCACTATTCATATGGTG
AGGGAAAATTGATAGCTCGGCGAGAAGTCTTCTCTATTCTACCAGACTTCCCTTCTGACTTGCCT
ACATGTTCGTAACCTTGCCTTCTTCGTACACCCTCTGGTAAGGCTAAGCGTTCCCTACCAGCCAG
AGTCAGTAGCTTGAGATTCAGTGGCTTGTGAAAACGCCCTACCCTTTCAATCAGTAGTCAGCTCT
GTAGTCAGTCTCCTCACTGGTAGGATCAGAATAGCCTCACAGGAT
Right flanking sequence: Indices 751633 -- 752132
ACCAAAGGCTGTAATGAATGCTGCGTGCTCTTCTCTCCCATAGCACAAACCTACTCGTATTCTGG
TCTAACTCAAGTGCTGTAGGTCAAACCCCTCTTATCTGTCTTACCCATAGCCTCTCTTTCTTACT
GCCCTATCTGTACGGTTATGGAACTAAGCTTATCGGCACTAACCATCTGTTGGCTCAATAACTTC
TCTCTAACCCTACCTAATATACCAGTGGGGTTATCTCTGTCTCCCTTGCCGCCTTTCATAGTCTC
TTAGCCACCCTATCTGGTAGGTTATTTCCTCCCGCTTCTCTTACTACCACCCTAATAAGTAAGTG
GGGGTTATCCTCGTTGTATGGCTTGTCTTACCTTAGTGATCTCTGTCTATCCCTACCAAGTATCC
TCACTAGCGCCCTCGCTATCACTGAAGTGCCTGACCTCAACCCATAATTAGACCAAAGGCCCGAC
CAAGGAGGGGAACCCACTTACTTATTAGGGCAGGTTAGCCAACTT
Found at i:752682 original size:9 final size:9
Alignment explanation
Indices: 752668--752703 Score: 72
Period size: 9 Copynumber: 4.0 Consensus size: 9
752658 AAGTTTCAGT
752668 GATGGCGGC
1 GATGGCGGC
752677 GATGGCGGC
1 GATGGCGGC
752686 GATGGCGGC
1 GATGGCGGC
752695 GATGGCGGC
1 GATGGCGGC
752704 CCTTAGGGTC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 27 1.00
ACGTcount: A:0.11, C:0.22, G:0.56, T:0.11
Consensus pattern (9 bp):
GATGGCGGC
Left flanking sequence: Indices 752168 -- 752667
AACCATGAGCTAGCTCTATCTCTATACCTAGCTACCTAATCTACAGCTACTAACATCATCCAGCC
CAGCATCCATCCCAGCATCAGTCATCATCCCAGCATCCTAGCATACTAGCATACCAGCATCAGTC
ATTTCATCATACCAGCATACCAGTAGTAGATAATACAATCTCTAATCCTGGGGATTCGGTTGGAT
GTACATCCATTTGTACAAAATGATCTATTTGCTCCCTATCCCAAAGCAGGTTCTATCCACTCTCA
CCTACTCCTTTGACCTTCTCACCCGGTATGAGAAAGTAGAGGGCAAAGAGAAGTCAGTGAAGTTA
CCATAAAGAATGACATATAATAAGGGGAAGTGCCGCCAAATCACTAGCTATCTGATATGATATGA
AATGCATAATGACATATATAATGAATGTCACTATCTCTGGTCTCGAAGTCACCAATGAATGACGT
AATTACGTATATAATTCATGACTGGAATCACGGACAAGTTTCAGT
Right flanking sequence: Indices 752704 -- 753203
CCTTAGGGTCGAGCGAGAAATCGATGGCGGCCCTTATGGTCGAGCCCCTACCGGACCTTATGGTC
GAGCACCTAAAGGTCCTCTCCTCTCCTTATCAGTCGAGCCCCCTAAAGGGTCCTTAACAGTCGAG
CCTGCTTGCGCATCCTTATGGTCGAGCGAGAAATCCCTCCTACGTCAGTCGAGTGGCTTGTGACC
TCGCCCCTTCCTTTTTTGGGGCCCCGTGATTGGGTGGGAATAGAGGAGAACGTATTACCCTAGAA
TACTGACCTGGGACTGGTGTATGAGTTCAGCTTTGTTTATAAGTCCTATCCAAATGGGTGGGTGG
GCACTTTTACCATTCGTATTCACTTTTGAAGCCTACACGATCAATCGAAGGAAGTTTGAAAGCTA
CCCACAGTATTGCATTGCCCTCATTGAGGAAAGGAACTACAGCCAGACCCCTTATCTTGGAAGGG
CGGCTTGCTTGGGTGGGCTGAACAGTGAGCGAGTGCTATTGAATT
Found at i:755730 original size:15 final size:15
Alignment explanation
Indices: 755712--755741 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
755702 TATGACTAGT
755712 TTGGGTATATCGACG
1 TTGGGTATATCGACG
755727 TTGGGTATATCGACG
1 TTGGGTATATCGACG
755742 ATAGATTCCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.20, C:0.13, G:0.33, T:0.33
Consensus pattern (15 bp):
TTGGGTATATCGACG
Left flanking sequence: Indices 755212 -- 755711
AGTTCAAACCAACAGGCAGGGGTAGAGCCAGACGGCCCCCGCAAGGGGGGAGGCTAACCCATCGG
AATGCGGTACTGTCCTTTACGGAACTTGAAGCGTTTGTTTGGGCAGCTCAACATCAGGGGTCCTT
GCCTTGAGCATGAGGCTCCTATCCTTCCAGATGAAGATTGTCTCTATTCGGACCCTTCCTGAGAT
AGTCTGATGAGCTATAGAGAGTCCAAAGAGCTCTTTCTTCGAGCTACCTAAAGGTCCCGGAGGGG
CTTGCGCTTCTGAGGGCAAGGAGTGAGGCTTCGCCGACTGAGAAGATCAAACTGATCCTACTTCA
AATGGTATGAGAAATGATGAGGTTCCCTAATCAAAAAATCCAGTTCATATTGGAAATGATCTATA
ATGGATCTCGACAAACTAGCGATAAACGCACTTTTTATTGAAAAAGGTGATATTGCGCTAATGGC
CAGACAACATCAAATTCTTCATCAAACGAGGGCTGTATGACTAGT
Right flanking sequence: Indices 755742 -- 756241
ATAGATTCCTCGTTGTGGATTTCAAGTAGCAATCAAGCGTGTTTTGTCTTAGAGGTTGGATTTTT
AGGCCTTGAACTCAAACTCCTAGAGCTCTAACCGTTCCTTAGTTCAAGCTCAGAGTTTGATGGAT
CGATCAACCTAGTGTTTGTGTTCCTTCTTCAGACCAGAGATTAGGATTGTTCCATTGATAAGATA
GAGAGCTCCTTTCCTTCACTTCATGCCTAAGAGAGTGAGCTTCAGAGGGATAGCTGGCTTGGAGA
ATCTCATGCTCAGAGAGAGATGGTCTTTCCTCAGACTAAGAGAGTGAGTCCCATAGACTGATCTT
CCTCAGACTAAGCTAAACGGCACTCTGGCATTGAGGCTTTGCCGCTTGAGAAGATGAAAGAGTTA
TTTAGCATAATAGAACAAGGCTAGCTTCCTTAAGAACAAATGCCAGTTCCTCTCGGTAAGAGCTG
CTAGGAGGGCTTGACTTCAACTCTCGTAGTACCTCACAATTCTCA
Found at i:756788 original size:30 final size:31
Alignment explanation
Indices: 756754--756826 Score: 85
Period size: 34 Copynumber: 2.3 Consensus size: 31
756744 AGCACGTCAA
* * *
756754 AACGAAGGC-ATGCTGATCCGTCTAGGCCCT
1 AACGAAGGCAATGCTGAGCCGTATAGGCCAT
756784 AACGAAGGCTAAAATGCTGAGCCGTATAGGCCAT
1 AACGAAGGC---AATGCTGAGCCGTATAGGCCAT
756818 AACGAAGGC
1 AACGAAGGC
756827 TGTGTAAAGC
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
30 9 0.25
34 27 0.75
ACGTcount: A:0.32, C:0.25, G:0.27, T:0.16
Consensus pattern (31 bp):
AACGAAGGCAATGCTGAGCCGTATAGGCCAT
Left flanking sequence: Indices 756254 -- 756753
TAGCAGGTTTCCTCTCCTTATCAGTCGAGCCCCTGTCGGTTTGGGTTTACTTATTGGGTGGGGGG
GCTTATGGTCGAGCCTGCTTACGCATCCTCGGTGAGCTTCTTCCTAGCTGGAGCTCTTCTAGTCA
GGTCAAGTAGCATACAAAGAGAAAGGCCAGTGTCTAAGGAGAAAAGCTCATGAAAGCCTCAAGCA
GTAGGGTTTTAGCGGTCCCTTCAACTCCGGAGCATGTTCCCCTAAGGCAATAGCTCAAGTTGTAT
GGACAAATGTTCCATTGAGCCATTTACCTCCGCTCAAATGCCAGATTGAAAGTGTCTAATTTCAC
GGACTTGAGTGTGTGTGTGCGGTGTAAGTACGGGGGGCCAGGGGGGGTGCAGTGTGTGTCCCCCT
CGGATTGGCCTTCCTGTTCTTTAGGCAAGCAAGCTCTAAGGCTAGGTTGAATATGAGCATGCTTC
TTTCAAGGCCAGCATAAAGACATATATAATGATGAAGCACGTCAA
Right flanking sequence: Indices 756827 -- 757326
TGTGTAAAGCTGAGCCGTATAGGGGTGTTTCATCAAGCTAGGCAGGGTGAGTACCAAACCAGCTC
AAGGTCAAGGGTCAGGTCCAAAAAAGCTAGGCGAGGTGAAGGGGACAACCCATTGTGAAATAGGA
TTGTACATATACCATTGTCAAATAGGATTGTACGTGTACCTATATAATCTAGAGAATAGTCAATC
CTATAGGGGATTGCCAATAAAGAGGCACCAACAAAAGGGAGGAAGGAGAGGCCTTTTTGATATGA
GAAAAGACCCGAGAAGGTCCTGAAAAATACAACTATAATGTCATTTCCCTGGGAAAATGAAAGAT
AGAAAGTAGTCTATCTAATACATTTCCTATGGCTCAGCAGGGAGCCGCAGTAGGAAAGGGCGGCT
CTTTCTCAGCGACCCCAGTGTGGAAGCCCCGGACTCAATCATACATTTATAAACAGACTGTAAGG
GTTCCTGTTAGCGAGGCAAGTCTAGGGTTCGAGGCACCACCCCGC
Found at i:756814 original size:34 final size:36
Alignment explanation
Indices: 756763--756849 Score: 108
Period size: 34 Copynumber: 2.5 Consensus size: 36
756753 AAACGAAGGC
* * *
756763 ATGCTGATCCGTCTAGGCCCTAACGAAGGC-T-AAA
1 ATGCTGAGCCGTATAGGCCATAACGAAGGCGTGAAA
*
756797 ATGCTGAGCCGTATAGGCCATAACGAAGGCTGTGTAA
1 ATGCTGAGCCGTATAGGCCATAACGAAGGC-GTGAAA
756834 A-GCTGAGCCGTATAGG
1 ATGCTGAGCCGTATAGG
756850 GGTGTTTCAT
Statistics
Matches: 46, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
34 27 0.59
36 16 0.35
37 3 0.07
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.21
Consensus pattern (36 bp):
ATGCTGAGCCGTATAGGCCATAACGAAGGCGTGAAA
Left flanking sequence: Indices 756263 -- 756762
TCCTCTCCTTATCAGTCGAGCCCCTGTCGGTTTGGGTTTACTTATTGGGTGGGGGGGCTTATGGT
CGAGCCTGCTTACGCATCCTCGGTGAGCTTCTTCCTAGCTGGAGCTCTTCTAGTCAGGTCAAGTA
GCATACAAAGAGAAAGGCCAGTGTCTAAGGAGAAAAGCTCATGAAAGCCTCAAGCAGTAGGGTTT
TAGCGGTCCCTTCAACTCCGGAGCATGTTCCCCTAAGGCAATAGCTCAAGTTGTATGGACAAATG
TTCCATTGAGCCATTTACCTCCGCTCAAATGCCAGATTGAAAGTGTCTAATTTCACGGACTTGAG
TGTGTGTGTGCGGTGTAAGTACGGGGGGCCAGGGGGGGTGCAGTGTGTGTCCCCCTCGGATTGGC
CTTCCTGTTCTTTAGGCAAGCAAGCTCTAAGGCTAGGTTGAATATGAGCATGCTTCTTTCAAGGC
CAGCATAAAGACATATATAATGATGAAGCACGTCAAAACGAAGGC
Right flanking sequence: Indices 756850 -- 757349
GGTGTTTCATCAAGCTAGGCAGGGTGAGTACCAAACCAGCTCAAGGTCAAGGGTCAGGTCCAAAA
AAGCTAGGCGAGGTGAAGGGGACAACCCATTGTGAAATAGGATTGTACATATACCATTGTCAAAT
AGGATTGTACGTGTACCTATATAATCTAGAGAATAGTCAATCCTATAGGGGATTGCCAATAAAGA
GGCACCAACAAAAGGGAGGAAGGAGAGGCCTTTTTGATATGAGAAAAGACCCGAGAAGGTCCTGA
AAAATACAACTATAATGTCATTTCCCTGGGAAAATGAAAGATAGAAAGTAGTCTATCTAATACAT
TTCCTATGGCTCAGCAGGGAGCCGCAGTAGGAAAGGGCGGCTCTTTCTCAGCGACCCCAGTGTGG
AAGCCCCGGACTCAATCATACATTTATAAACAGACTGTAAGGGTTCCTGTTAGCGAGGCAAGTCT
AGGGTTCGAGGCACCACCCCGCTATCCAAGCCAAGGAGGTTCGGT
Found at i:758933 original size:25 final size:25
Alignment explanation
Indices: 758902--758967 Score: 123
Period size: 25 Copynumber: 2.6 Consensus size: 25
758892 CCGACAGGGG
758902 GCTCGACTGATAAGGACCTTTAGGT
1 GCTCGACTGATAAGGACCTTTAGGT
758927 GCTCGACTGATAAGGACCTTTAGGT
1 GCTCGACTGATAAGGACCTTTAGGT
*
758952 GCTCGACTGTTAAGGA
1 GCTCGACTGATAAGGA
758968 TGCGCAAGCA
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
25 40 1.00
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.27
Consensus pattern (25 bp):
GCTCGACTGATAAGGACCTTTAGGT
Left flanking sequence: Indices 758402 -- 758901
TAAAGAAAAGAGTTTGATCCTGGCTCAGAACAGTGAAAGTGATGGTGAGATTGCTTGTTCGTGAA
CTAGCGTTAATGGGGTGAGGTGGTGAGCGATGGAAGATCTATTTCTATTGCTTTTATGTATTTCA
TGCTTGGCACGGTGAATCATTTCAGTGGATATCTATATCTTATTGACCTTTCAGTTCTTATTCAT
TTCATCCCCCCCACCCAATAAGTAAATTGAAATTGATTGCTTGCTTGACGTTAGGAAAGCAAGGT
GCGAAGCCGCCAGAGAAGAAATAGGAAGGGCAAGGTCCCGGAGGGGCTTGCGCTTCCTAGTGCAA
GGTAATTTATTGCTTGTCCGCACCGGGCAAGGACCGGTAGGGGCTTGCTTGACGCTAGGAAAGCA
AGGAACTTGAGTTGCTCGACCACCGGGAGAGGACCCGGAGGGGCTTGCGCTTCCTAGTGCAAGGA
ACGTAGTGCTTGCTTGACGTTAGGAAAGCAAGGACCCGACAGGGG
Right flanking sequence: Indices 758968 -- 759467
TGCGCAAGCATGCTCGACTGTTAACCCCCCAACACAATAAGTAAACCCTAACCTTAAGGATGCGC
AAGCATGCTCGACTGTTAAGGACCCTCACCATATGAATAGTGAGTGACCCCTAAAGAATATAGGG
CCCTTTAGGGGGCTCGACTGATAAGGACCTTTAGGTGCTCGACCCCAGGTTGACTTATTGGGTGG
GGCAATAAGTCTATGTCATTATGCATTTCATATGGTTCGGGTCTGCTTAAGGCTGGGTGAAGGCT
TCTGTTGGACTTGGCTGGTGATGAAGGCGGAAGGTTGAATGCTTGTACGAACAATATCTCATTAT
ATATGTCATTATGCATTCATTCGTTGCTCAATATTCCAAAACCTCCGCTCCTAGTGCAAGGACCC
GAAAGGGGGCTCGACTGATAAGGACCTTTAGGTGCTCGACTGTTAAGGAGAGGAGAGGAGAGGAT
GCCCCCGGCAGGGTGAGGTACGAACGCTCGACTAATAAGGCCGCC
Found at i:760201 original size:27 final size:27
Alignment explanation
Indices: 760184--760242 Score: 82
Period size: 27 Copynumber: 2.2 Consensus size: 27
760174 AGGACCCTTT
* *
760184 AGGGGGCTCGACTGATAAGGAGAGGAG
1 AGGGGGCTCGACTGATAAGGACACGAG
* *
760211 AGGGGGCTCGACTGATAAGGAGAGGAG
1 AGGGGGCTCGACTGATAAGGACACGAG
760238 AGGGG
1 AGGGG
760243 TCACTCACTA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.29, C:0.10, G:0.51, T:0.10
Consensus pattern (27 bp):
AGGGGGCTCGACTGATAAGGACACGAG
Left flanking sequence: Indices 759684 -- 760183
TCTATATCTGTTTGAGATAGGGCTGACCCCCTAGCTCTCAAGCTCGGAGGGAATTAGCTCTAACG
GAGTGTTGTCTCGCCGAGGGAGCGCTTCTCTCAAAGTTCTTAGAGTTCAGGCGCTTTGCCGAAAC
TTGACTTGATTCGATCTCTCAAAATAGCATAATGACATATATAAGATATGCATGATCTGCTAAAG
CGTAATTACCTATCTCATTCAGGCAGGAAGATCGTCATGAATTCGATCATGACCGTAATGACATA
TATAATATATGAATATGAAGGCTGCCGGCATTCGAAAGGCCCCATATGACTTAGGGGCGGAGCCA
CTCACTATTCATATGGTGAGGGTGCGTAAGCACACTCGACTGCCTTTGGTTACTTATTTGAGAGG
AGGGGAGAGGGGCGGAGCCACTCACTATTCATATGGTGAGGACCGGTAGGGGCTCGACTGTCAAG
GACCCTTTAGGGTGCGTAAGCACGCTCGACTAATAAGGACCCTTT
Right flanking sequence: Indices 760243 -- 760742
TCACTCACTATTCCGATGGTGAGGGATTCTCCGTACTTTCCAATAGTGAGTACGCTTCGATGAAG
TATAGCTTTGATGAAATAAGAGGATGCGTAAGCAGGCTCGACCACCGGGAGAGGATTGATCCCTG
GCACATAGGCGGCTGGGGTTGCCCCGCGTACCTGCACTATAGTTTGCCTGTTCCAATAGGTGCTG
TTCCGAAGTAGACTCCCCATGTTCACAACAAATGAGAGAGATCTAAAAGTTCCCCTTCGTTACTA
CATACCCGAGAAAGAGAGTTCCCCATGCACCATACAAGAGGATGGCTAGACATGTTGATAGAGTG
AGTTGCCTAGCTCGTTGAATAACGTGACTATGTGCTTTTTCCAACTATGTGTACGGGACAAGGCT
ATGTGCAGTTAGTGAATGGCTTCGTGCAGTTAGTGAATGGCTTTCTGTGAACGGCTTGTCTTCAG
TGAGTGGCTTCTATGTGAGTTACCCAAGTTATCAACATACGGCCT
Found at i:760659 original size:21 final size:21
Alignment explanation
Indices: 760635--760675 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
760625 ACAAGGCTAT
760635 GTGCAGTTAGTGAATGGCTTC
1 GTGCAGTTAGTGAATGGCTTC
760656 GTGCAGTTAGTGAATGGCTT
1 GTGCAGTTAGTGAATGGCTT
760676 TCTGTGAACG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.20, C:0.12, G:0.34, T:0.34
Consensus pattern (21 bp):
GTGCAGTTAGTGAATGGCTTC
Left flanking sequence: Indices 760135 -- 760634
CAAGGACCCTTTAGGGTGCGTAAGCACGCTCGACTAATAAGGACCCTTTAGGGGGCTCGACTGAT
AAGGAGAGGAGAGGGGGCTCGACTGATAAGGAGAGGAGAGGGGTCACTCACTATTCCGATGGTGA
GGGATTCTCCGTACTTTCCAATAGTGAGTACGCTTCGATGAAGTATAGCTTTGATGAAATAAGAG
GATGCGTAAGCAGGCTCGACCACCGGGAGAGGATTGATCCCTGGCACATAGGCGGCTGGGGTTGC
CCCGCGTACCTGCACTATAGTTTGCCTGTTCCAATAGGTGCTGTTCCGAAGTAGACTCCCCATGT
TCACAACAAATGAGAGAGATCTAAAAGTTCCCCTTCGTTACTACATACCCGAGAAAGAGAGTTCC
CCATGCACCATACAAGAGGATGGCTAGACATGTTGATAGAGTGAGTTGCCTAGCTCGTTGAATAA
CGTGACTATGTGCTTTTTCCAACTATGTGTACGGGACAAGGCTAT
Right flanking sequence: Indices 760676 -- 761175
TCTGTGAACGGCTTGTCTTCAGTGAGTGGCTTCTATGTGAGTTACCCAAGTTATCAACATACGGC
CTCGAAACAGCCCCGGCACGGCACGGTACGGTACGGCACACGGTACAGCTCTATGATCGACGGCA
CTTTGAATCACAACTACCCACCCGCTTCACCAACCTATATTTACTGCCCGTGCACTTAGTAAACT
TAGGACTTAGAAATGGATGCCCACACCGTGCGTGCCTTATTGCATGGAGGGAGGGAGCACCTAGG
AAAGCCCACTGGATTCATGTTTTTACTTTTGCTACCAACAACCACTTGCTTCATGAATCCTTAGG
GGAGTACCACTATTCTCTTTATTGGGCCGAGCGGGCTTAACCCCCAGATACTAGCGGACAGCCTA
GGAACGCCAGTTATGCTTACTTGCTTTATTTCAGTTTTACCAACCCCCTCTTCGTTCTATTTACA
AACCATACCTCACCCAACTTACTGATGCCCCACCCGCTTACTTCT
Found at i:762270 original size:16 final size:16
Alignment explanation
Indices: 762249--762303 Score: 110
Period size: 16 Copynumber: 3.4 Consensus size: 16
762239 CAATCAATAT
762249 ATAAGCCCACAATCCC
1 ATAAGCCCACAATCCC
762265 ATAAGCCCACAATCCC
1 ATAAGCCCACAATCCC
762281 ATAAGCCCACAATCCC
1 ATAAGCCCACAATCCC
762297 ATAAGCC
1 ATAAGCC
762304 ATTAAGCCGA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 39 1.00
ACGTcount: A:0.38, C:0.42, G:0.07, T:0.13
Consensus pattern (16 bp):
ATAAGCCCACAATCCC
Left flanking sequence: Indices 761749 -- 762248
GAGCTCTGTATCATACATTTGACCATGTATAGCAACTCCAAGGTGTAGATTGGTTCATGCTACAT
AGTGAGTAAACATACTAGTTACTACTGGTTAAGGTTTATGATGTCTAGCTGTTCCTAACTATGTA
ACACAATGAATATGTGATTAATAGACCCAACTTCGAGACACGGCATGATACAGCGTGACTTTCTG
TATTCCACTTACTCTAGCTCTGTAATTTCCTGATTAGGCTAGTAAATAGTCTGTGAACTCTTAGT
CTATATAGAAGTGAATAATTCTATATACCCCTGAATTAATAGCTGCATCATATGATACGTAGACG
TGGAATGGAATACTATAACACTATTTGACAAGGACTAAGTTATAGTTAGGTATGAGTATTTAATC
ACAAGAGATTATCTGACCTGTAGTTGAGTCATTAGTAACAGCTCCAAGCTTGCTTCTGTAATAAA
ATGAATTACTCTTACCGGCAGTGACCTTCCTTAATCAATCAATAT
Right flanking sequence: Indices 762304 -- 762803
ATTAAGCCGAGCCATTTGATGAGCCATTAAGCCATCCAGTTGATAAGCAATTAAGCCATTAAGCC
AGCGGTACACCAGAATCACCGGATAAGCCACGGGTTCCTTATAAGCCATTCCCGATAAGCATAAG
CCATTTCTGATAAGGGATTTGTTGCGATTCCGCTAATGAATCAATTCACTACACACGCCCGCCTA
GCTCCCCCATTCTCTGCTGTTCGTTCGGAGTGATAAAGAAAATGGTACACACACACGATCGAGGA
TATATTGATCACGAACACTACTCCTTGGGTGGTCTTTCGCTCCATGCTGGACCTTTGGTGTACCG
CCCGTTCATGGGGAGGTAAGGGTTCCGAAGTGCCCTCGACAATGACTCATAATGACTCGTTTGGG
GTCCTTCCGGATAATGACCCAACCCCTCGCTAGATCGGGCATAGCAGGATTCTCGGGATTTTCTA
TCTCCGGCGTGGACTAGACCTATCATGCCGAAACACAGATCTGTC
Found at i:762273 original size:8 final size:8
Alignment explanation
Indices: 762249--762303 Score: 56
Period size: 8 Copynumber: 6.9 Consensus size: 8
762239 CAATCAATAT
762249 ATAAGCCC
1 ATAAGCCC
* *
762257 ACAATCCC
1 ATAAGCCC
762265 ATAAGCCC
1 ATAAGCCC
* *
762273 ACAATCCC
1 ATAAGCCC
762281 ATAAGCCC
1 ATAAGCCC
* *
762289 ACAATCCC
1 ATAAGCCC
762297 ATAAGCC
1 ATAAGCC
762304 ATTAAGCCGA
Statistics
Matches: 35, Mismatches: 12, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
8 35 1.00
ACGTcount: A:0.38, C:0.42, G:0.07, T:0.13
Consensus pattern (8 bp):
ATAAGCCC
Left flanking sequence: Indices 761749 -- 762248
GAGCTCTGTATCATACATTTGACCATGTATAGCAACTCCAAGGTGTAGATTGGTTCATGCTACAT
AGTGAGTAAACATACTAGTTACTACTGGTTAAGGTTTATGATGTCTAGCTGTTCCTAACTATGTA
ACACAATGAATATGTGATTAATAGACCCAACTTCGAGACACGGCATGATACAGCGTGACTTTCTG
TATTCCACTTACTCTAGCTCTGTAATTTCCTGATTAGGCTAGTAAATAGTCTGTGAACTCTTAGT
CTATATAGAAGTGAATAATTCTATATACCCCTGAATTAATAGCTGCATCATATGATACGTAGACG
TGGAATGGAATACTATAACACTATTTGACAAGGACTAAGTTATAGTTAGGTATGAGTATTTAATC
ACAAGAGATTATCTGACCTGTAGTTGAGTCATTAGTAACAGCTCCAAGCTTGCTTCTGTAATAAA
ATGAATTACTCTTACCGGCAGTGACCTTCCTTAATCAATCAATAT
Right flanking sequence: Indices 762304 -- 762803
ATTAAGCCGAGCCATTTGATGAGCCATTAAGCCATCCAGTTGATAAGCAATTAAGCCATTAAGCC
AGCGGTACACCAGAATCACCGGATAAGCCACGGGTTCCTTATAAGCCATTCCCGATAAGCATAAG
CCATTTCTGATAAGGGATTTGTTGCGATTCCGCTAATGAATCAATTCACTACACACGCCCGCCTA
GCTCCCCCATTCTCTGCTGTTCGTTCGGAGTGATAAAGAAAATGGTACACACACACGATCGAGGA
TATATTGATCACGAACACTACTCCTTGGGTGGTCTTTCGCTCCATGCTGGACCTTTGGTGTACCG
CCCGTTCATGGGGAGGTAAGGGTTCCGAAGTGCCCTCGACAATGACTCATAATGACTCGTTTGGG
GTCCTTCCGGATAATGACCCAACCCCTCGCTAGATCGGGCATAGCAGGATTCTCGGGATTTTCTA
TCTCCGGCGTGGACTAGACCTATCATGCCGAAACACAGATCTGTC
Found at i:762356 original size:24 final size:24
Alignment explanation
Indices: 762297--762362 Score: 87
Period size: 24 Copynumber: 2.7 Consensus size: 24
762287 CCACAATCCC
* *
762297 ATAAGCCATTAAGCCGAGCCATTTG
1 ATAAGCCATTAAGCC-ATCCAGTTG
*
762322 ATGAGCCATTAAGCCATCCAGTTG
1 ATAAGCCATTAAGCCATCCAGTTG
*
762346 ATAAGCAATTAAGCCAT
1 ATAAGCCATTAAGCCAT
762363 TAAGCCAGCG
Statistics
Matches: 36, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
24 22 0.61
25 14 0.39
ACGTcount: A:0.35, C:0.23, G:0.18, T:0.24
Consensus pattern (24 bp):
ATAAGCCATTAAGCCATCCAGTTG
Left flanking sequence: Indices 761797 -- 762296
ATTGGTTCATGCTACATAGTGAGTAAACATACTAGTTACTACTGGTTAAGGTTTATGATGTCTAG
CTGTTCCTAACTATGTAACACAATGAATATGTGATTAATAGACCCAACTTCGAGACACGGCATGA
TACAGCGTGACTTTCTGTATTCCACTTACTCTAGCTCTGTAATTTCCTGATTAGGCTAGTAAATA
GTCTGTGAACTCTTAGTCTATATAGAAGTGAATAATTCTATATACCCCTGAATTAATAGCTGCAT
CATATGATACGTAGACGTGGAATGGAATACTATAACACTATTTGACAAGGACTAAGTTATAGTTA
GGTATGAGTATTTAATCACAAGAGATTATCTGACCTGTAGTTGAGTCATTAGTAACAGCTCCAAG
CTTGCTTCTGTAATAAAATGAATTACTCTTACCGGCAGTGACCTTCCTTAATCAATCAATATATA
AGCCCACAATCCCATAAGCCCACAATCCCATAAGCCCACAATCCC
Right flanking sequence: Indices 762363 -- 762862
TAAGCCAGCGGTACACCAGAATCACCGGATAAGCCACGGGTTCCTTATAAGCCATTCCCGATAAG
CATAAGCCATTTCTGATAAGGGATTTGTTGCGATTCCGCTAATGAATCAATTCACTACACACGCC
CGCCTAGCTCCCCCATTCTCTGCTGTTCGTTCGGAGTGATAAAGAAAATGGTACACACACACGAT
CGAGGATATATTGATCACGAACACTACTCCTTGGGTGGTCTTTCGCTCCATGCTGGACCTTTGGT
GTACCGCCCGTTCATGGGGAGGTAAGGGTTCCGAAGTGCCCTCGACAATGACTCATAATGACTCG
TTTGGGGTCCTTCCGGATAATGACCCAACCCCTCGCTAGATCGGGCATAGCAGGATTCTCGGGAT
TTTCTATCTCCGGCGTGGACTAGACCTATCATGCCGAAACACAGATCTGTCCGTGATTCACATAT
CTCCGCAAAACCGATCTATTGTATGTGATATATTCAATCCAAAGG
Found at i:763872 original size:112 final size:112
Alignment explanation
Indices: 763675--763898 Score: 448
Period size: 112 Copynumber: 2.0 Consensus size: 112
763665 CGACCCACAA
763675 GGTCCGGAGGGCTTGCGCTTCTGAGGGCAAGGTGCCGCTTGACCGTAAGGGAGATGACAGTGAGA
1 GGTCCGGAGGGCTTGCGCTTCTGAGGGCAAGGTGCCGCTTGACCGTAAGGGAGATGACAGTGAGA
763740 TTGCCCTCTCCTCAATCAAGAAAGAAAGAAATCTCAAAAGAAAATGG
66 TTGCCCTCTCCTCAATCAAGAAAGAAAGAAATCTCAAAAGAAAATGG
763787 GGTCCGGAGGGCTTGCGCTTCTGAGGGCAAGGTGCCGCTTGACCGTAAGGGAGATGACAGTGAGA
1 GGTCCGGAGGGCTTGCGCTTCTGAGGGCAAGGTGCCGCTTGACCGTAAGGGAGATGACAGTGAGA
763852 TTGCCCTCTCCTCAATCAAGAAAGAAAGAAATCTCAAAAGAAAATGG
66 TTGCCCTCTCCTCAATCAAGAAAGAAAGAAATCTCAAAAGAAAATGG
763899 TGAAGGCTTC
Statistics
Matches: 112, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
112 112 1.00
ACGTcount: A:0.30, C:0.21, G:0.30, T:0.19
Consensus pattern (112 bp):
GGTCCGGAGGGCTTGCGCTTCTGAGGGCAAGGTGCCGCTTGACCGTAAGGGAGATGACAGTGAGA
TTGCCCTCTCCTCAATCAAGAAAGAAAGAAATCTCAAAAGAAAATGG
Left flanking sequence: Indices 763175 -- 763674
ATGGCTATGGTGGGAAACGACCTGCCTAGGTACTAAATCCAAAATGAAAAGTGAGTACGGAGGGC
TCTGAGGTAGAAGGGTTAGGGTGTGACTGAGGCTTATTAGGGCAAGCGTCGTAACCCCAACTTTG
TGAACAAAAAAAGGTTCTAGTGAACAAAAAAAGGTTATACGGCATGTAAGTCTTCCACGATTATT
CCTAATCAGAGTCCTCTAAGTTAGGTTCAAGCGACGATAAAGGGGTGAAACCGCTCACTATTCAT
ATGGTGAGGGTAACCTCCGCCTCCGGGGATTGGGGTGGGTGGGTAAATAGTGGTCGAGCCTGCTT
GCGCATCCTCGTGGGGCAAGAATAGTAGGGTGAGCCTGCCGAACTCTCGACCACCGGGCCGCCAT
CGAAATATGTTCAAACCTCCGCCATCTTATCGGTCAATAATGACATATATAATAGATCTTTTTTC
TGATGATATTATATACGCTACATGCCTTGAAATCTCGACCCACAA
Right flanking sequence: Indices 763899 -- 764398
TGAAGGCTTCTTTCAACGGGTTCAAGGCTGGCATTTGCGGGACTTAGTGTACTTGGCAAAAGGTA
ATGAATTGACAGTGGTCGCCAATCTGTTCACATATATAAGATCAAAAGAAAGAATTGTCTGAAAT
TACGTATATAATTGGAATCTCATTCATCAGAGTGAGCAAGAGCTTGAGGTAGAGATTGACGGATT
CCCCCACCTACAGACTAGGGGTGGGGTGTAGAAATGCGGGTAGCTGCTGGTAGGTCCAACCCTAA
TCTTAATTCTCTTCCCCTGCCAATGACAGGGCATTTCCCTGCGGTCTATCCGCAGGCAGTTCTTC
CGTTCAGTTGCTGTAATTGTATCTTTCTGAGTCATATGGCCGCTAACCGCACACCCATCAGGCGC
CCCTCGACCTGTAACAAAAAGCCACTTTATCTATTCATTGTTTTCCCGCACTCCTTGAGCTACAG
AATCTTCTTCACCCACCCCCTCTATTTCATAGTGGTTCCACTAAT
Found at i:771237 original size:27 final size:27
Alignment explanation
Indices: 771220--771278 Score: 82
Period size: 27 Copynumber: 2.2 Consensus size: 27
771210 AGGACCCTTT
* *
771220 AGGGGGCTCGACTGATAAGGAGAGGAG
1 AGGGGGCTCGACTGATAAGGACACGAG
* *
771247 AGGGGGCTCGACTGATAAGGAGAGGAG
1 AGGGGGCTCGACTGATAAGGACACGAG
771274 AGGGG
1 AGGGG
771279 TCACTCACTC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.29, C:0.10, G:0.51, T:0.10
Consensus pattern (27 bp):
AGGGGGCTCGACTGATAAGGACACGAG
Left flanking sequence: Indices 770720 -- 771219
CCAGCCCCTTCAATTAAGTCGTTAGGTGAGGAATGAAAATCGCTCGACTAAAAGGAGAGGATGCT
AACGCATGGCTCGACTGAAAGGCCGCCATCGGCTCGACCACCGCCTTTTAGTTACTTATTTGAGA
GCCCAATAAGTCAATTTCAACTTGAGTTGCTCGACCACCGGGCCGCCATCACCGGCAGGGTGCGT
AAGCACACTCGACTGCCCTTGCCCCCGGAGGGACAAGCGGCTTCGCACCTTAGTTACTTATTTGA
GAGGGGGGCCGCCATCGCCCCTACTACTTTATAGGGCCCTATATTCTTTAGGGGCGGAGCCACTC
ACTATTCATATGGTGAGGGTGCGTAAGCACACTCGACTGCCTTTGGTTACTTATTTGAGAGGAGG
GGAGAGGGTGCGTTAGCACACTCACTATTCATATGGTGAGGACCGGTAGGGGCTCGACTGTCAAG
GACCCTTTAGGGTGCGTAAGCACGCTCGACTAATAAGGACCCTTT
Right flanking sequence: Indices 771279 -- 771778
TCACTCACTCATTCCGATGGGTGAGGGGCTCGACTGATAAGGAGAGGAACTTGAAGAACCACCGG
GCCGCCATCGCCTTTCATTCATATCTTCCCGAACTCTAACTCAGGGTTGACCTACCTTTCCTTTC
AGGACCTTTCCCGTGGAAAAGGGAAGGAGATCACTTAGAGCTAGAAGGTAAGGAGGTTGACCCGC
TTGTCCGCATCTTGAAAGGTTATCACTATCTTTCTTCCCCTCGAAGAGCTATGCGTAAGACCTTT
CCTTTGCTATAGGTAAGCAACGGAGATCGATCTATAGTGCATTCCGGGATCACCTTCCCTCCCTT
CGGAATCCTACACCAATTATGAAATTCCAAATTCTGGAATCACCACTTAACCGGCCGGGCCCACC
CCTCGCCCTCGTACCTCAGGCGAGCGGAGAAATCCCCTCGCCCGCCTCAGGAAAGGTAGAACCTT
ATCTTCTTCCCGATGAATAAGAATAGGGTAGCAGCACAGATTAGC
Found at i:772393 original size:52 final size:54
Alignment explanation
Indices: 772335--772442 Score: 148
Period size: 52 Copynumber: 2.0 Consensus size: 54
772325 GGCTTGCCTA
*
772335 TTTATATTGAGATTTAGATCAATATTTCTA-TT-TATAAGTACGCGCCCCTATT
1 TTTATATTGAGATGTAGATCAATATTTCTATTTATATAAGTACGCGCCCCTATT
* * ***
772387 TTTATATTGATATGTATATTTCTATTTCTATTTATATAAGTACGCGCCCCTATT
1 TTTATATTGAGATGTAGATCAATATTTCTATTTATATAAGTACGCGCCCCTATT
772441 TT
1 TT
772443 GAAGTAGCTA
Statistics
Matches: 48, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
52 24 0.50
53 2 0.04
54 22 0.46
ACGTcount: A:0.27, C:0.15, G:0.10, T:0.48
Consensus pattern (54 bp):
TTTATATTGAGATGTAGATCAATATTTCTATTTATATAAGTACGCGCCCCTATT
Left flanking sequence: Indices 771835 -- 772334
AAAGACGCTCCAGCGACGTTATCCCTTACCCTTCGCTCGCTATGCTCAGGCTAAGTGCCTTATCG
GGATTATTTCCGAGCCTGAGGCTCTGATCGATCGCTAGTTACGAAGCTATTCGAGGTCCACTGGT
CTCGGGAAGGCTTATCACAGTCAGGTGCGGGGCAATTTCCCCCCTATATGACAATAAGAATAGGG
GTGGGGCGAGATGAACCGAGGTTTCGTTCGCCACGGCTCCCCCATTCACTTGTCCGGTGAAGATA
GTGGGGCTAAAAAGCCAAAACTACCTTCGTCATTAAGGTTGCCCCTTCCATCCACATAGCCTGCC
TTGCCCCTCCCTATTTATTAGGCTACACGTATTGAAAGCCAGTAAGTAAGTCCATTGTGTACAGG
CATAACCCCCTTGATTTCCAATAATCTAATTAATAATATGCGAAACAAACATACATTTTGATTGA
CGAGTTGCGCATATTGCTGTTTCACCGAGTGGGTGGGCTTGCCTA
Right flanking sequence: Indices 772443 -- 772942
GAAGTAGCTAGCTCGGAAGCGGGAGCAGAAAAAATAGATTGATCGCTGGCTATTCCGGGAATCCC
ACTTTTCTATGTCAGTAATATTAGACCGTAAAGGTAAGGTTATGCATTTGCGGAGGTTCAGAATT
TGTGCATGCACTATAGATCTATAGCGCCTACACAAATTCTGTTCTGCCTTTATAAGTAGCGCCCG
CCCCATTTTGATCATATCATGTAGTAGCAGATCTCGCTCAACAAGCGAGAGAATGGGAACTAGGG
AGGGGTCTGGAGCAAAAAGCGCTATGCAGCATCAGTAATACCTCTCGGTTAGACCTATAGTAGCG
AGGGGTATAACCTTGCGGCGAGGATAACCGGGGAAGGGATAACCCCTCGCGGACCGGTTCTTTCA
GTCAACTGAGTTCTGTCTGGACGAATCAGCTTCTTGTCCAACTGGTAATGGCTCAATCTATAGAT
AGAGAGCCTTATGATGGGAAACTATCACGTTAGGTTTGGAGAGAG
Found at i:773521 original size:13 final size:13
Alignment explanation
Indices: 773503--773589 Score: 69
Period size: 13 Copynumber: 6.9 Consensus size: 13
773493 ATTGAAAGCC
773503 AGTAAGTAAGTCG
1 AGTAAGTAAGTCG
773516 AGTAAGTAAGTCG
1 AGTAAGTAAGTCG
*
773529 CGTAAGT-A----
1 AGTAAGTAAGTCG
*
773537 AGTAAGTAAGTAG
1 AGTAAGTAAGTCG
*
773550 AGTAAGTAGAGT-A
1 AGTAAGTA-AGTCG
*
773563 AGTAGAGTCAGTCG
1 AGTA-AGTAAGTCG
773577 AGTAAGTAGAGTC
1 AGTAAGTA-AGTC
773590 AGTCGCGTAA
Statistics
Matches: 59, Mismatches: 6, Indels: 17
0.72 0.07 0.21
Matches are distributed among these distances:
8 6 0.10
9 1 0.02
12 1 0.02
13 37 0.63
14 14 0.24
ACGTcount: A:0.39, C:0.07, G:0.31, T:0.23
Consensus pattern (13 bp):
AGTAAGTAAGTCG
Left flanking sequence: Indices 773003 -- 773502
CGGGATCATCAGTCTACTCTACCTCAATTCACCATTTTGAACCCCATACAGAAGGTTTTTCCGTA
CCAGCTTCTTCTACCCATACCGCAGTTGAAGCACCTAAAGGAGAATTTGGTGTGTTTCTGGTCAG
TAATGGAAGCAATCGTCCCTATCGTCGTAGAATAAGAGCACCTGGCTCTGCCCATTTACAAGGAC
TCGATTCTATGTCCAAACATCACATGCCAGCAGATGTGGTCACCATAATTGGTACTCAAGATATT
GTGTTTGGAGAGGTAGATAGATAGGACGGACTACTAGTTGCCGGGCCCTAGCTTTATTGCGAGCC
AGAAACAACCTCACCTCCCTCAAAGATGGATGCGTATGTAAGTATTGAGGGGGAATAAAATAATA
CGTAACGTATTTCAAGCTAGGCGTAGCATATTTCAAGCTAGGCCATAGGTATATTGAAAGCTAGG
AGTCACTAATGTCTTAGACAGGCTAGGCTACACGTATTGAAAGCC
Right flanking sequence: Indices 773590 -- 774089
AGTCGCGTAAGTAAGCAAGCGGGTGGAAGGAGAACCTGAAAAATCATTTTCGTTTCAAATGAATA
AATAGGAAAGAAATGAATGAATGGGAAATGGAGATGGATGAACAATTTCTGGCTGGAAAGATAAG
GAAATAGATAGATGGAGGCCCTCATATTTCCGCGATTGATTAAGGGGTGGGGGGGAAAAAGTGAG
CGAATTGCATGTAGAGAGAATCGTAGGGGCTTATAGTTTAATTGGTTGAAACGTACCGCTCATAA
CGGTGATATTGTAGGTTCGAGCCCTACTAAGCCTATTCCTTTCTTTCCCCTACAGTAACAGTAGA
AGTCCCCGCTTCCGAACAAAGAGAGGATAGGAATTTCTTGCTCGACCAAAGGGCCCTATATTATT
TAGGGGCGGAGCCACTCACTATTCATATGGTGAGGGTGCGTAAGCACACTCGACTGCCTTTGGTT
ACTTATTTGAGAGGAGGGGAGAGGGTGCGTTAGCACACTCACTAT
Found at i:773553 original size:9 final size:9
Alignment explanation
Indices: 773503--773602 Score: 91
Period size: 9 Copynumber: 11.4 Consensus size: 9
773493 ATTGAAAGCC
773503 AGTA-AGTA
1 AGTAGAGTA
*
773511 AGTCGAGTA
1 AGTAGAGTA
*
773520 AGTA-AGTCG
1 AGTAGAGT-A
*
773529 CGTA-AGTA
1 AGTAGAGTA
773537 AGTA-AGTA
1 AGTAGAGTA
773545 AGTAGAGTA
1 AGTAGAGTA
773554 AGTAGAGTA
1 AGTAGAGTA
*
773563 AGTAGAGTC
1 AGTAGAGTA
*
773572 AGTCGAGTA
1 AGTAGAGTA
*
773581 AGTAGAGTC
1 AGTAGAGTA
* *
773590 AGTCGCGTA
1 AGTAGAGTA
773599 AGTA
1 AGTA
773603 AGCAAGCGGG
Statistics
Matches: 74, Mismatches: 15, Indels: 5
0.79 0.16 0.05
Matches are distributed among these distances:
8 17 0.23
9 57 0.77
ACGTcount: A:0.38, C:0.08, G:0.31, T:0.23
Consensus pattern (9 bp):
AGTAGAGTA
Left flanking sequence: Indices 773003 -- 773502
CGGGATCATCAGTCTACTCTACCTCAATTCACCATTTTGAACCCCATACAGAAGGTTTTTCCGTA
CCAGCTTCTTCTACCCATACCGCAGTTGAAGCACCTAAAGGAGAATTTGGTGTGTTTCTGGTCAG
TAATGGAAGCAATCGTCCCTATCGTCGTAGAATAAGAGCACCTGGCTCTGCCCATTTACAAGGAC
TCGATTCTATGTCCAAACATCACATGCCAGCAGATGTGGTCACCATAATTGGTACTCAAGATATT
GTGTTTGGAGAGGTAGATAGATAGGACGGACTACTAGTTGCCGGGCCCTAGCTTTATTGCGAGCC
AGAAACAACCTCACCTCCCTCAAAGATGGATGCGTATGTAAGTATTGAGGGGGAATAAAATAATA
CGTAACGTATTTCAAGCTAGGCGTAGCATATTTCAAGCTAGGCCATAGGTATATTGAAAGCTAGG
AGTCACTAATGTCTTAGACAGGCTAGGCTACACGTATTGAAAGCC
Right flanking sequence: Indices 773603 -- 774102
AGCAAGCGGGTGGAAGGAGAACCTGAAAAATCATTTTCGTTTCAAATGAATAAATAGGAAAGAAA
TGAATGAATGGGAAATGGAGATGGATGAACAATTTCTGGCTGGAAAGATAAGGAAATAGATAGAT
GGAGGCCCTCATATTTCCGCGATTGATTAAGGGGTGGGGGGGAAAAAGTGAGCGAATTGCATGTA
GAGAGAATCGTAGGGGCTTATAGTTTAATTGGTTGAAACGTACCGCTCATAACGGTGATATTGTA
GGTTCGAGCCCTACTAAGCCTATTCCTTTCTTTCCCCTACAGTAACAGTAGAAGTCCCCGCTTCC
GAACAAAGAGAGGATAGGAATTTCTTGCTCGACCAAAGGGCCCTATATTATTTAGGGGCGGAGCC
ACTCACTATTCATATGGTGAGGGTGCGTAAGCACACTCGACTGCCTTTGGTTACTTATTTGAGAG
GAGGGGAGAGGGTGCGTTAGCACACTCACTATTCATATGGTGAGG
Found at i:773584 original size:4 final size:4
Alignment explanation
Indices: 773503--773566 Score: 65
Period size: 4 Copynumber: 15.0 Consensus size: 4
773493 ATTGAAAGCC
* * *
773503 AGTA AGTA AGTCG AGTA AGTA AGTCG CGTA AGTA AGTA AGTA AGTA GAGTA
1 AGTA AGTA AGT-A AGTA AGTA AGT-A AGTA AGTA AGTA AGTA AGTA -AGTA
773554 AGTA GAGTA AGTA
1 AGTA -AGTA AGTA
773567 GAGTCAGTCG
Statistics
Matches: 50, Mismatches: 6, Indels: 8
0.78 0.09 0.12
Matches are distributed among these distances:
4 37 0.74
5 13 0.26
ACGTcount: A:0.42, C:0.05, G:0.30, T:0.23
Consensus pattern (4 bp):
AGTA
Left flanking sequence: Indices 773003 -- 773502
CGGGATCATCAGTCTACTCTACCTCAATTCACCATTTTGAACCCCATACAGAAGGTTTTTCCGTA
CCAGCTTCTTCTACCCATACCGCAGTTGAAGCACCTAAAGGAGAATTTGGTGTGTTTCTGGTCAG
TAATGGAAGCAATCGTCCCTATCGTCGTAGAATAAGAGCACCTGGCTCTGCCCATTTACAAGGAC
TCGATTCTATGTCCAAACATCACATGCCAGCAGATGTGGTCACCATAATTGGTACTCAAGATATT
GTGTTTGGAGAGGTAGATAGATAGGACGGACTACTAGTTGCCGGGCCCTAGCTTTATTGCGAGCC
AGAAACAACCTCACCTCCCTCAAAGATGGATGCGTATGTAAGTATTGAGGGGGAATAAAATAATA
CGTAACGTATTTCAAGCTAGGCGTAGCATATTTCAAGCTAGGCCATAGGTATATTGAAAGCTAGG
AGTCACTAATGTCTTAGACAGGCTAGGCTACACGTATTGAAAGCC
Right flanking sequence: Indices 773567 -- 774066
GAGTCAGTCGAGTAAGTAGAGTCAGTCGCGTAAGTAAGCAAGCGGGTGGAAGGAGAACCTGAAAA
ATCATTTTCGTTTCAAATGAATAAATAGGAAAGAAATGAATGAATGGGAAATGGAGATGGATGAA
CAATTTCTGGCTGGAAAGATAAGGAAATAGATAGATGGAGGCCCTCATATTTCCGCGATTGATTA
AGGGGTGGGGGGGAAAAAGTGAGCGAATTGCATGTAGAGAGAATCGTAGGGGCTTATAGTTTAAT
TGGTTGAAACGTACCGCTCATAACGGTGATATTGTAGGTTCGAGCCCTACTAAGCCTATTCCTTT
CTTTCCCCTACAGTAACAGTAGAAGTCCCCGCTTCCGAACAAAGAGAGGATAGGAATTTCTTGCT
CGACCAAAGGGCCCTATATTATTTAGGGGCGGAGCCACTCACTATTCATATGGTGAGGGTGCGTA
AGCACACTCGACTGCCTTTGGTTACTTATTTGAGAGGAGGGGAGA
Found at i:773670 original size:19 final size:19
Alignment explanation
Indices: 773646--773682 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
773636 TTTTCGTTTC
773646 AAATGAATAAATAGGAAAG
1 AAATGAATAAATAGGAAAG
* *
773665 AAATGAATGAATGGGAAA
1 AAATGAATAAATAGGAAA
773683 TGGAGATGGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.59, C:0.00, G:0.24, T:0.16
Consensus pattern (19 bp):
AAATGAATAAATAGGAAAG
Left flanking sequence: Indices 773146 -- 773645
CGTCCCTATCGTCGTAGAATAAGAGCACCTGGCTCTGCCCATTTACAAGGACTCGATTCTATGTC
CAAACATCACATGCCAGCAGATGTGGTCACCATAATTGGTACTCAAGATATTGTGTTTGGAGAGG
TAGATAGATAGGACGGACTACTAGTTGCCGGGCCCTAGCTTTATTGCGAGCCAGAAACAACCTCA
CCTCCCTCAAAGATGGATGCGTATGTAAGTATTGAGGGGGAATAAAATAATACGTAACGTATTTC
AAGCTAGGCGTAGCATATTTCAAGCTAGGCCATAGGTATATTGAAAGCTAGGAGTCACTAATGTC
TTAGACAGGCTAGGCTACACGTATTGAAAGCCAGTAAGTAAGTCGAGTAAGTAAGTCGCGTAAGT
AAGTAAGTAAGTAGAGTAAGTAGAGTAAGTAGAGTCAGTCGAGTAAGTAGAGTCAGTCGCGTAAG
TAAGCAAGCGGGTGGAAGGAGAACCTGAAAAATCATTTTCGTTTC
Right flanking sequence: Indices 773683 -- 774182
TGGAGATGGATGAACAATTTCTGGCTGGAAAGATAAGGAAATAGATAGATGGAGGCCCTCATATT
TCCGCGATTGATTAAGGGGTGGGGGGGAAAAAGTGAGCGAATTGCATGTAGAGAGAATCGTAGGG
GCTTATAGTTTAATTGGTTGAAACGTACCGCTCATAACGGTGATATTGTAGGTTCGAGCCCTACT
AAGCCTATTCCTTTCTTTCCCCTACAGTAACAGTAGAAGTCCCCGCTTCCGAACAAAGAGAGGAT
AGGAATTTCTTGCTCGACCAAAGGGCCCTATATTATTTAGGGGCGGAGCCACTCACTATTCATAT
GGTGAGGGTGCGTAAGCACACTCGACTGCCTTTGGTTACTTATTTGAGAGGAGGGGAGAGGGTGC
GTTAGCACACTCACTATTCATATGGTGAGGACCGGTAGGGGCTCGACTGTCAAGGACCCTTTAGG
GTGCGTAAGCACGCTCGACTAATAAGGACCCTTTAGGGGGCTCGA
Found at i:774189 original size:27 final size:27
Alignment explanation
Indices: 774172--774230 Score: 82
Period size: 27 Copynumber: 2.2 Consensus size: 27
774162 AGGACCCTTT
* *
774172 AGGGGGCTCGACTGATAAGGAGAGGAG
1 AGGGGGCTCGACTGATAAGGACACGAG
* *
774199 AGGGGGCTCGACTGATAAGGAGAGGAG
1 AGGGGGCTCGACTGATAAGGACACGAG
774226 AGGGG
1 AGGGG
774231 TCACTCACTA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.29, C:0.10, G:0.51, T:0.10
Consensus pattern (27 bp):
AGGGGGCTCGACTGATAAGGACACGAG
Left flanking sequence: Indices 773672 -- 774171
TGAATGGGAAATGGAGATGGATGAACAATTTCTGGCTGGAAAGATAAGGAAATAGATAGATGGAG
GCCCTCATATTTCCGCGATTGATTAAGGGGTGGGGGGGAAAAAGTGAGCGAATTGCATGTAGAGA
GAATCGTAGGGGCTTATAGTTTAATTGGTTGAAACGTACCGCTCATAACGGTGATATTGTAGGTT
CGAGCCCTACTAAGCCTATTCCTTTCTTTCCCCTACAGTAACAGTAGAAGTCCCCGCTTCCGAAC
AAAGAGAGGATAGGAATTTCTTGCTCGACCAAAGGGCCCTATATTATTTAGGGGCGGAGCCACTC
ACTATTCATATGGTGAGGGTGCGTAAGCACACTCGACTGCCTTTGGTTACTTATTTGAGAGGAGG
GGAGAGGGTGCGTTAGCACACTCACTATTCATATGGTGAGGACCGGTAGGGGCTCGACTGTCAAG
GACCCTTTAGGGTGCGTAAGCACGCTCGACTAATAAGGACCCTTT
Right flanking sequence: Indices 774231 -- 774730
TCACTCACTATTCATATGGTGAGGGTGAGCCTGCCGAACTCTCGACCCCGGGAGAGGGTTTGAAC
GCTCACTCATCATATGGGTGAGGGCCCTTACTTCTTCATAGGGGCGGAGCCACTCACTATTCATA
TGGTGAGGGGTCACTCACTATTCATATGGTGAGGGCCGCCATCGAGAGGTACGTTAAGTGACTCG
ACTAACAGGACCCTTTAGGGGGCTCGACTGATAAGGAGAGGAGAGGAACGAACAAAGCGACCAAC
GCCCCCCCACCCAATAAGCATCAAGGACCGGCAGGGTGCGTAAGCACGCTCGACTAATAAGGCCG
CCATCGGCTCGACCACCGCCTTTTAGTTACTTATTTGAGAGCCCAATAAGTCAATTTCAACTTGA
GTTGCTCGACCACCGGGCCGCCATCACCGGCAGGGTGCGTAAGCACACTCGACTGCCCTTGCCCC
CGGAGGGACAAGCGGCTTCGCACCTTAGTTACTTATTTGAGAGGG
Found at i:774377 original size:26 final size:26
Alignment explanation
Indices: 774346--774395 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
774336 GGGGCGGAGC
774346 CACTCACTATTCATATGGTGAGGGGT
1 CACTCACTATTCATATGGTGAGGGGT
774372 CACTCACTATTCATATGGTGAGGG
1 CACTCACTATTCATATGGTGAGGG
774396 CCGCCATCGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.24, C:0.20, G:0.26, T:0.30
Consensus pattern (26 bp):
CACTCACTATTCATATGGTGAGGGGT
Left flanking sequence: Indices 773846 -- 774345
ATAACGGTGATATTGTAGGTTCGAGCCCTACTAAGCCTATTCCTTTCTTTCCCCTACAGTAACAG
TAGAAGTCCCCGCTTCCGAACAAAGAGAGGATAGGAATTTCTTGCTCGACCAAAGGGCCCTATAT
TATTTAGGGGCGGAGCCACTCACTATTCATATGGTGAGGGTGCGTAAGCACACTCGACTGCCTTT
GGTTACTTATTTGAGAGGAGGGGAGAGGGTGCGTTAGCACACTCACTATTCATATGGTGAGGACC
GGTAGGGGCTCGACTGTCAAGGACCCTTTAGGGTGCGTAAGCACGCTCGACTAATAAGGACCCTT
TAGGGGGCTCGACTGATAAGGAGAGGAGAGGGGGCTCGACTGATAAGGAGAGGAGAGGGGTCACT
CACTATTCATATGGTGAGGGTGAGCCTGCCGAACTCTCGACCCCGGGAGAGGGTTTGAACGCTCA
CTCATCATATGGGTGAGGGCCCTTACTTCTTCATAGGGGCGGAGC
Right flanking sequence: Indices 774396 -- 774895
CCGCCATCGAGAGGTACGTTAAGTGACTCGACTAACAGGACCCTTTAGGGGGCTCGACTGATAAG
GAGAGGAGAGGAACGAACAAAGCGACCAACGCCCCCCCACCCAATAAGCATCAAGGACCGGCAGG
GTGCGTAAGCACGCTCGACTAATAAGGCCGCCATCGGCTCGACCACCGCCTTTTAGTTACTTATT
TGAGAGCCCAATAAGTCAATTTCAACTTGAGTTGCTCGACCACCGGGCCGCCATCACCGGCAGGG
TGCGTAAGCACACTCGACTGCCCTTGCCCCCGGAGGGACAAGCGGCTTCGCACCTTAGTTACTTA
TTTGAGAGGGGGGCCGCCATCGCCCCTACTACTTTATAGGGCCCTATATTCTTTAGGGGCGGAGC
CACTCACTATTCATATGGTGAGGGTGCGTAAGCACACTCGACTGCCTTTGGTTACTTATTTGAGA
GGAGGGGAGAGGGTGCGTTAGCACACTCACTATTCATATGGTGAG
Found at i:774918 original size:27 final size:27
Alignment explanation
Indices: 774874--774926 Score: 72
Period size: 28 Copynumber: 2.0 Consensus size: 27
774864 TGCGTTAGCA
*
774874 CACTCACTATTCATAT-GGTGAGGGGT
1 CACTCACTATTCAGATGGGTGAGGGGT
*
774900 CACTCACTCATTCCGATGGGTGAGGGG
1 CACTCACT-ATTCAGATGGGTGAGGGG
774927 CTCGACTGAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 8 0.35
27 6 0.26
28 9 0.39
ACGTcount: A:0.21, C:0.23, G:0.30, T:0.26
Consensus pattern (27 bp):
CACTCACTATTCAGATGGGTGAGGGGT
Left flanking sequence: Indices 774374 -- 774873
CTCACTATTCATATGGTGAGGGCCGCCATCGAGAGGTACGTTAAGTGACTCGACTAACAGGACCC
TTTAGGGGGCTCGACTGATAAGGAGAGGAGAGGAACGAACAAAGCGACCAACGCCCCCCCACCCA
ATAAGCATCAAGGACCGGCAGGGTGCGTAAGCACGCTCGACTAATAAGGCCGCCATCGGCTCGAC
CACCGCCTTTTAGTTACTTATTTGAGAGCCCAATAAGTCAATTTCAACTTGAGTTGCTCGACCAC
CGGGCCGCCATCACCGGCAGGGTGCGTAAGCACACTCGACTGCCCTTGCCCCCGGAGGGACAAGC
GGCTTCGCACCTTAGTTACTTATTTGAGAGGGGGGCCGCCATCGCCCCTACTACTTTATAGGGCC
CTATATTCTTTAGGGGCGGAGCCACTCACTATTCATATGGTGAGGGTGCGTAAGCACACTCGACT
GCCTTTGGTTACTTATTTGAGAGGAGGGGAGAGGGTGCGTTAGCA
Right flanking sequence: Indices 774927 -- 775426
CTCGACTGATAAGGAGAGGTCCGGCAGGGTGAGGTACGTTAGTGACTCGACCCATGCCTTTTAGT
TACTTATTTGAGAGCCCAATAAGTCAAATGAATACGTTAGTGACTCGACTGATAAGGACCCTTTA
GGGGGCTCGACTGATAAGGACCTTTAGGTGCTCGACCCAGGGTTTACTTATTGGGTGGGGCAATA
AGTCAACCCAAGAGGAGAGGTACGTTAGTGACTCGACCAACGCTAGTTACTTATTTGAGAGCCCA
ATAAGTCAAATTGAAACGAACGCTCGACTAATAAGGACCCTTTAGGGGGCTCACTATTCATATGG
TGAGGAGAGGGCCCTTTTTTTGACTTATTTGAGAGCCCAATAAGTCAAATTGAAACTTGAAGAAC
TAAAAGGCCGCCATCGCTCGACCAACGGGCCGCCATCATGCCCCCGGCAGGGCTCGACCAACGGG
CCGCCATCAAAAAAGGATAAGGAGATCGAAGGAGAGTGAAGTATT
Found at i:775065 original size:27 final size:25
Alignment explanation
Indices: 775035--775092 Score: 89
Period size: 27 Copynumber: 2.2 Consensus size: 25
775025 ACGTTAGTGA
775035 CTCGACTGATAAGGACCCTTTAGGGGG
1 CTCGACTGATAAGGA-CCTTTA-GGGG
*
775062 CTCGACTGATAAGGACCTTTAGGTG
1 CTCGACTGATAAGGACCTTTAGGGG
775087 CTCGAC
1 CTCGAC
775093 CCAGGGTTTA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
25 9 0.30
26 6 0.20
27 15 0.50
ACGTcount: A:0.22, C:0.24, G:0.29, T:0.24
Consensus pattern (25 bp):
CTCGACTGATAAGGACCTTTAGGGG
Left flanking sequence: Indices 774535 -- 775034
CACGCTCGACTAATAAGGCCGCCATCGGCTCGACCACCGCCTTTTAGTTACTTATTTGAGAGCCC
AATAAGTCAATTTCAACTTGAGTTGCTCGACCACCGGGCCGCCATCACCGGCAGGGTGCGTAAGC
ACACTCGACTGCCCTTGCCCCCGGAGGGACAAGCGGCTTCGCACCTTAGTTACTTATTTGAGAGG
GGGGCCGCCATCGCCCCTACTACTTTATAGGGCCCTATATTCTTTAGGGGCGGAGCCACTCACTA
TTCATATGGTGAGGGTGCGTAAGCACACTCGACTGCCTTTGGTTACTTATTTGAGAGGAGGGGAG
AGGGTGCGTTAGCACACTCACTATTCATATGGTGAGGGGTCACTCACTCATTCCGATGGGTGAGG
GGCTCGACTGATAAGGAGAGGTCCGGCAGGGTGAGGTACGTTAGTGACTCGACCCATGCCTTTTA
GTTACTTATTTGAGAGCCCAATAAGTCAAATGAATACGTTAGTGA
Right flanking sequence: Indices 775093 -- 775592
CCAGGGTTTACTTATTGGGTGGGGCAATAAGTCAACCCAAGAGGAGAGGTACGTTAGTGACTCGA
CCAACGCTAGTTACTTATTTGAGAGCCCAATAAGTCAAATTGAAACGAACGCTCGACTAATAAGG
ACCCTTTAGGGGGCTCACTATTCATATGGTGAGGAGAGGGCCCTTTTTTTGACTTATTTGAGAGC
CCAATAAGTCAAATTGAAACTTGAAGAACTAAAAGGCCGCCATCGCTCGACCAACGGGCCGCCAT
CATGCCCCCGGCAGGGCTCGACCAACGGGCCGCCATCAAAAAAGGATAAGGAGATCGAAGGAGAG
TGAAGTATTGGTCCAGGAATCAGTCTTGCTTGGGTACTATAAACTCTATATGCAGGAGAGAATGG
AAGGGCTAACGGGTCTAGTTCTATCTATAGGTGGGTAGGTCTAGTCATTCCTTGCAGTAGGCTCT
TAATTGAAGAAGAGTATAATAGGCTCGGCCGGACCCCAATAGGGT
Found at i:780345 original size:27 final size:27
Alignment explanation
Indices: 780308--780366 Score: 118
Period size: 27 Copynumber: 2.2 Consensus size: 27
780298 TAGTGAGTGA
780308 CCCCTCTCCTCTCCTTATCAGTCGAGC
1 CCCCTCTCCTCTCCTTATCAGTCGAGC
780335 CCCCTCTCCTCTCCTTATCAGTCGAGC
1 CCCCTCTCCTCTCCTTATCAGTCGAGC
780362 CCCCT
1 CCCCT
780367 AAAGGGTCCT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.10, C:0.51, G:0.10, T:0.29
Consensus pattern (27 bp):
CCCCTCTCCTCTCCTTATCAGTCGAGC
Left flanking sequence: Indices 779808 -- 780307
TGGATAGTTCCTCTACCAGTTTGAAAGTTTCAGAATTGAGTCAACAGGTTGAAGTTTGGAGCCTA
CAGTATCTTACGCTCATGTATCAGTCCCAGAATATTATGCCTCTTCCTCAGCCCCAGTATCATAC
GCTTCTGAATCTGCAATGTCTTCAGTAGTTGAAGCAGTACCCGAAGTAGTTTACCCAGCACCCGA
TGAATCTGCAGTTTATTCAGTTGTTTCAGCAGCACCTGAGTTTACCCAGCATATTTTGTAAGTTA
TATCATCGTATCCCTAAAATGGTTAAGCCTTCAGAGCCTGTAGCCATGGTAGCCTATGCAGCTAC
TTGAGAAGCAGAGCTTGCTCTACATCTCAAGGATATAAAGTCAACTAACTTGGGCACTATGTTCA
TTGATGCTAAAGATATAGAAAGTAACATGAGAGCCTCTAGGATACAGCTCAAAACTAGGAAAGAT
CCCCCTGGAGGGAGAGATATCCCTCACCATATGAATAGTGAGTGA
Right flanking sequence: Indices 780367 -- 780866
AAAGGGTCCTTATTAGTCGAGCGTGCTTACGCACCCTAAAGGGTCCTTGACAGTCGAGCCCCTAC
CGGTCCTCACCATATGAATAGTGAGTGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCTCCTCACCATATGAATAGTGAGTGTGCTAACGCACCCTCTCCCCTCCTCTCAAATAA
GTAACCAAAGGCAGTCGAGTGTGCTTACGCACCCTCACCATATGAATAGTGAGTGTGCTAACGCA
CCCTCTCCCCTCCTCTCAAATAAGTAACCAAAGGCAGTCGAGTGTGCTTACGCACCCTCACCATC
GGAATAGTGAGTGGCTCCGCCCCTAAATAATATAGGGCCCTGATAGGAGGAAAGGAAAAGAGCTT
GAGGCTTCATCTGTTGTTTAAGAAAACTTCTCTATGGAAGAATTGACCAAGCTAAAATCTATGGC
TAATGACCTAACCAAATTGAAACAGGGACAGTTTGACCATTCCCC
Found at i:780376 original size:27 final size:27
Alignment explanation
Indices: 780318--780388 Score: 79
Period size: 27 Copynumber: 2.6 Consensus size: 27
780308 CCCCTCTCCT
*** *
780318 CTCCTTATCAGTCGAGCCCCCTCTCCT
1 CTCCTTATCAGTCGAGCCCCCTAAACG
*
780345 CTCCTTATCAGTCGAGCCCCCTAAAGG
1 CTCCTTATCAGTCGAGCCCCCTAAACG
* *
780372 GTCCTTATTAGTCGAGC
1 CTCCTTATCAGTCGAGC
780389 GTGCTTACGC
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 37 1.00
ACGTcount: A:0.17, C:0.38, G:0.17, T:0.28
Consensus pattern (27 bp):
CTCCTTATCAGTCGAGCCCCCTAAACG
Left flanking sequence: Indices 779818 -- 780317
CTCTACCAGTTTGAAAGTTTCAGAATTGAGTCAACAGGTTGAAGTTTGGAGCCTACAGTATCTTA
CGCTCATGTATCAGTCCCAGAATATTATGCCTCTTCCTCAGCCCCAGTATCATACGCTTCTGAAT
CTGCAATGTCTTCAGTAGTTGAAGCAGTACCCGAAGTAGTTTACCCAGCACCCGATGAATCTGCA
GTTTATTCAGTTGTTTCAGCAGCACCTGAGTTTACCCAGCATATTTTGTAAGTTATATCATCGTA
TCCCTAAAATGGTTAAGCCTTCAGAGCCTGTAGCCATGGTAGCCTATGCAGCTACTTGAGAAGCA
GAGCTTGCTCTACATCTCAAGGATATAAAGTCAACTAACTTGGGCACTATGTTCATTGATGCTAA
AGATATAGAAAGTAACATGAGAGCCTCTAGGATACAGCTCAAAACTAGGAAAGATCCCCCTGGAG
GGAGAGATATCCCTCACCATATGAATAGTGAGTGACCCCTCTCCT
Right flanking sequence: Indices 780389 -- 780888
GTGCTTACGCACCCTAAAGGGTCCTTGACAGTCGAGCCCCTACCGGTCCTCACCATATGAATAGT
GAGTGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTCCTCACCATATGA
ATAGTGAGTGTGCTAACGCACCCTCTCCCCTCCTCTCAAATAAGTAACCAAAGGCAGTCGAGTGT
GCTTACGCACCCTCACCATATGAATAGTGAGTGTGCTAACGCACCCTCTCCCCTCCTCTCAAATA
AGTAACCAAAGGCAGTCGAGTGTGCTTACGCACCCTCACCATCGGAATAGTGAGTGGCTCCGCCC
CTAAATAATATAGGGCCCTGATAGGAGGAAAGGAAAAGAGCTTGAGGCTTCATCTGTTGTTTAAG
AAAACTTCTCTATGGAAGAATTGACCAAGCTAAAATCTATGGCTAATGACCTAACCAAATTGAAA
CAGGGACAGTTTGACCATTCCCCCTTAGGACCTACGCTTAGAGCC
Found at i:780465 original size:1 final size:1
Alignment explanation
Indices: 780459--780504 Score: 92
Period size: 1 Copynumber: 46.0 Consensus size: 1
780449 ATAGTGAGTG
780459 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
1 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
780505 TCCTCACCAT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 45 1.00
ACGTcount: A:0.00, C:1.00, G:0.00, T:0.00
Consensus pattern (1 bp):
C
Left flanking sequence: Indices 779959 -- 780458
TCAGTAGTTGAAGCAGTACCCGAAGTAGTTTACCCAGCACCCGATGAATCTGCAGTTTATTCAGT
TGTTTCAGCAGCACCTGAGTTTACCCAGCATATTTTGTAAGTTATATCATCGTATCCCTAAAATG
GTTAAGCCTTCAGAGCCTGTAGCCATGGTAGCCTATGCAGCTACTTGAGAAGCAGAGCTTGCTCT
ACATCTCAAGGATATAAAGTCAACTAACTTGGGCACTATGTTCATTGATGCTAAAGATATAGAAA
GTAACATGAGAGCCTCTAGGATACAGCTCAAAACTAGGAAAGATCCCCCTGGAGGGAGAGATATC
CCTCACCATATGAATAGTGAGTGACCCCTCTCCTCTCCTTATCAGTCGAGCCCCCTCTCCTCTCC
TTATCAGTCGAGCCCCCTAAAGGGTCCTTATTAGTCGAGCGTGCTTACGCACCCTAAAGGGTCCT
TGACAGTCGAGCCCCTACCGGTCCTCACCATATGAATAGTGAGTG
Right flanking sequence: Indices 780505 -- 781004
TCCTCACCATATGAATAGTGAGTGTGCTAACGCACCCTCTCCCCTCCTCTCAAATAAGTAACCAA
AGGCAGTCGAGTGTGCTTACGCACCCTCACCATATGAATAGTGAGTGTGCTAACGCACCCTCTCC
CCTCCTCTCAAATAAGTAACCAAAGGCAGTCGAGTGTGCTTACGCACCCTCACCATCGGAATAGT
GAGTGGCTCCGCCCCTAAATAATATAGGGCCCTGATAGGAGGAAAGGAAAAGAGCTTGAGGCTTC
ATCTGTTGTTTAAGAAAACTTCTCTATGGAAGAATTGACCAAGCTAAAATCTATGGCTAATGACC
TAACCAAATTGAAACAGGGACAGTTTGACCATTCCCCCTTAGGACCTACGCTTAGAGCCCAAAAA
GAATCCTATCTGTAAGAAACCCCCATTCAACAGACCTCCTAGTGGCCTTCAAAGATAAAATAGGA
CATATGAACAAGATTCCCCATCAAATTAGAAAAGCCAAGCCACTA
Found at i:780655 original size:88 final size:88
Alignment explanation
Indices: 780506--780704 Score: 380
Period size: 88 Copynumber: 2.3 Consensus size: 88
780496 CCCCCCCCCT
780506 CCTCACCATATGAATAGTGAGTGTGCTAACGCACCCTCTCCCCTCCTCTCAAATAAGTAACCAAA
1 CCTCACCATATGAATAGTGAGTGTGCTAACGCACCCTCTCCCCTCCTCTCAAATAAGTAACCAAA
780571 GGCAGTCGAGTGTGCTTACGCAC
66 GGCAGTCGAGTGTGCTTACGCAC
780594 CCTCACCATATGAATAGTGAGTGTGCTAACGCACCCTCTCCCCTCCTCTCAAATAAGTAACCAAA
1 CCTCACCATATGAATAGTGAGTGTGCTAACGCACCCTCTCCCCTCCTCTCAAATAAGTAACCAAA
780659 GGCAGTCGAGTGTGCTTACGCAC
66 GGCAGTCGAGTGTGCTTACGCAC
**
780682 CCTCACCATCGGAATAGTGAGTG
1 CCTCACCATATGAATAGTGAGTG
780705 GCTCCGCCCC
Statistics
Matches: 109, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
88 109 1.00
ACGTcount: A:0.27, C:0.31, G:0.19, T:0.23
Consensus pattern (88 bp):
CCTCACCATATGAATAGTGAGTGTGCTAACGCACCCTCTCCCCTCCTCTCAAATAAGTAACCAAA
GGCAGTCGAGTGTGCTTACGCAC
Left flanking sequence: Indices 780006 -- 780505
ATCTGCAGTTTATTCAGTTGTTTCAGCAGCACCTGAGTTTACCCAGCATATTTTGTAAGTTATAT
CATCGTATCCCTAAAATGGTTAAGCCTTCAGAGCCTGTAGCCATGGTAGCCTATGCAGCTACTTG
AGAAGCAGAGCTTGCTCTACATCTCAAGGATATAAAGTCAACTAACTTGGGCACTATGTTCATTG
ATGCTAAAGATATAGAAAGTAACATGAGAGCCTCTAGGATACAGCTCAAAACTAGGAAAGATCCC
CCTGGAGGGAGAGATATCCCTCACCATATGAATAGTGAGTGACCCCTCTCCTCTCCTTATCAGTC
GAGCCCCCTCTCCTCTCCTTATCAGTCGAGCCCCCTAAAGGGTCCTTATTAGTCGAGCGTGCTTA
CGCACCCTAAAGGGTCCTTGACAGTCGAGCCCCTACCGGTCCTCACCATATGAATAGTGAGTGCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCT
Right flanking sequence: Indices 780705 -- 781204
GCTCCGCCCCTAAATAATATAGGGCCCTGATAGGAGGAAAGGAAAAGAGCTTGAGGCTTCATCTG
TTGTTTAAGAAAACTTCTCTATGGAAGAATTGACCAAGCTAAAATCTATGGCTAATGACCTAACC
AAATTGAAACAGGGACAGTTTGACCATTCCCCCTTAGGACCTACGCTTAGAGCCCAAAAAGAATC
CTATCTGTAAGAAACCCCCATTCAACAGACCTCCTAGTGGCCTTCAAAGATAAAATAGGACATAT
GAACAAGATTCCCCATCAAATTAGAAAAGCCAAGCCACTATGATTTTGCCCTCTCCTCCCTATTA
TGAATATGACTATGAACCAGGTGTTTAAGGCCCAGCTAATTAGCCCATGGATATCAATATGGTGT
TCCATCTCAAGGAGAATCTTATAGTCGATTATTTCCCTACCTCCATTGTTGTAGTTGATGAGTCT
CCAGGGGAAGAAGAAGGGGAAGTATTAGATGGCATTTTTCTTAAT
Done.