Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_039746
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 1191054
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 2 characters in sequence are not A, C, G, or T
File 1 of 8
Found at i:2063 original size:27 final size:27
Alignment explanation
Indices: 2046--2104 Score: 82
Period size: 27 Copynumber: 2.2 Consensus size: 27
2036 AGGACCCTTT
* *
2046 AGGGGGCTCGACTGATAAGGAGAGGAG
1 AGGGGGCTCGACTGATAAGGACACGAG
* *
2073 AGGGGGCTCGACTGATAAGGAGAGGAG
1 AGGGGGCTCGACTGATAAGGACACGAG
2100 AGGGG
1 AGGGG
2105 CGGAGCCACT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.29, C:0.10, G:0.51, T:0.10
Consensus pattern (27 bp):
AGGGGGCTCGACTGATAAGGACACGAG
Left flanking sequence: Indices 1546 -- 2045
GAACGGCCATCGAACCAAATTTGTCGTAGAATTCTGATTATTTCGTTTCATTCCTTATCAGAGAG
GGGCCGGCCCCGAGGAGCGGGGCGGCGGCTTATTGGGCCCCCCCACCAGTCAGTGTCTCTTTCTC
TTAAGCGGGTGAGGGTGGTTCTTAGAGGGGGAGAGAAACTCCGGAAATAATCACCCTCACCCGGG
CTAACAGCCAGCATTTGACCAGATCCTTCAATCCAACTTACACATATCTCAAACTAATTGGTTCC
TTTTTCTCCTCTGGCGGCTTCGCACCTTGTGTAACTGCTCAGAAGGATATGCTTCTGTTTATCAG
ATCGGGGATAAGGATTGCAGGGTGCGTTAGCACACTCGACTGTCAAGGCCGCCATCGCCCCTACT
ACTTTATAGGGACGGAGTCACTCACTATTCATATGGTGAGGACCGGTAGGGGCTCGACTGTCAAG
GACCCTTTAGGGTGCGTAAGCACGCTCGACTAATAAGGACCCTTT
Right flanking sequence: Indices 2105 -- 2604
CGGAGCCACTCACTATTCATATGGTGAGGGGTCACTCACTATTCATATGGTGAGGGTGCGTTAGC
ACACTCGACTGCCTTTGGTTACTTATTTGAGAGGAGGGGAGAGGGATTCGATCCAGCCGCAGGTT
CCCCTACGGCTACCTTGTTACGACTTCACCCCAGTCGAAGACCCCACCGTGGTATGCGCCAATAA
GACCACCCCAACCATAGTGGGCCACACTAGTGGAACATATATAGATAGGGTGATCATTGGTCTGA
TGCTTCGGGCGAAATCAACTCCCAGGGTGTGACGGGCGGTGTGTACAGGGCCCGGGTACATATTC
ACCGCGGCATGCTGATCCGCGATTACTAGCGATTCCAACTTCATGTTCTCGAGTTGCAGAGAACA
ATCCGAACTGAGGCAATCTTTCCGGATTCGCTCCGCCTTACGGCCTTGCTTCCCATTGTCATTGC
CATTGTAGCACGTGTGTGGCCCAGCCCATAAGGGCCATGCGGACT
Found at i:2147 original size:26 final size:26
Alignment explanation
Indices: 2111--2160 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
2101 GGGGCGGAGC
2111 CACTCACTATTCATATGGTGAGGGGT
1 CACTCACTATTCATATGGTGAGGGGT
2137 CACTCACTATTCATATGGTGAGGG
1 CACTCACTATTCATATGGTGAGGG
2161 TGCGTTAGCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.24, C:0.20, G:0.26, T:0.30
Consensus pattern (26 bp):
CACTCACTATTCATATGGTGAGGGGT
Left flanking sequence: Indices 1611 -- 2110
GGGCCGGCCCCGAGGAGCGGGGCGGCGGCTTATTGGGCCCCCCCACCAGTCAGTGTCTCTTTCTC
TTAAGCGGGTGAGGGTGGTTCTTAGAGGGGGAGAGAAACTCCGGAAATAATCACCCTCACCCGGG
CTAACAGCCAGCATTTGACCAGATCCTTCAATCCAACTTACACATATCTCAAACTAATTGGTTCC
TTTTTCTCCTCTGGCGGCTTCGCACCTTGTGTAACTGCTCAGAAGGATATGCTTCTGTTTATCAG
ATCGGGGATAAGGATTGCAGGGTGCGTTAGCACACTCGACTGTCAAGGCCGCCATCGCCCCTACT
ACTTTATAGGGACGGAGTCACTCACTATTCATATGGTGAGGACCGGTAGGGGCTCGACTGTCAAG
GACCCTTTAGGGTGCGTAAGCACGCTCGACTAATAAGGACCCTTTAGGGGGCTCGACTGATAAGG
AGAGGAGAGGGGGCTCGACTGATAAGGAGAGGAGAGGGGCGGAGC
Right flanking sequence: Indices 2161 -- 2660
TGCGTTAGCACACTCGACTGCCTTTGGTTACTTATTTGAGAGGAGGGGAGAGGGATTCGATCCAG
CCGCAGGTTCCCCTACGGCTACCTTGTTACGACTTCACCCCAGTCGAAGACCCCACCGTGGTATG
CGCCAATAAGACCACCCCAACCATAGTGGGCCACACTAGTGGAACATATATAGATAGGGTGATCA
TTGGTCTGATGCTTCGGGCGAAATCAACTCCCAGGGTGTGACGGGCGGTGTGTACAGGGCCCGGG
TACATATTCACCGCGGCATGCTGATCCGCGATTACTAGCGATTCCAACTTCATGTTCTCGAGTTG
CAGAGAACAATCCGAACTGAGGCAATCTTTCCGGATTCGCTCCGCCTTACGGCCTTGCTTCCCAT
TGTCATTGCCATTGTAGCACGTGTGTGGCCCAGCCCATAAGGGCCATGCGGACTTGACGTCATCC
CCACCTTCCTCCAGCATATCACTGGCAGTCTCTTGTGAGTGCAGC
Found at i:4163 original size:88 final size:88
Alignment explanation
Indices: 4014--4199 Score: 372
Period size: 88 Copynumber: 2.1 Consensus size: 88
4004 AGTGAGCGAC
4014 CCCTCACCATATGAATAGTGAGTGTGCTAACGCACCCTCTCCCCTCCTCTCAAATAAGTAACCAA
1 CCCTCACCATATGAATAGTGAGTGTGCTAACGCACCCTCTCCCCTCCTCTCAAATAAGTAACCAA
4079 AGGCAGTCGAGTGTGCTTACGCA
66 AGGCAGTCGAGTGTGCTTACGCA
4102 CCCTCACCATATGAATAGTGAGTGTGCTAACGCACCCTCTCCCCTCCTCTCAAATAAGTAACCAA
1 CCCTCACCATATGAATAGTGAGTGTGCTAACGCACCCTCTCCCCTCCTCTCAAATAAGTAACCAA
4167 AGGCAGTCGAGTGTGCTTACGCA
66 AGGCAGTCGAGTGTGCTTACGCA
4190 CCCTCACCAT
1 CCCTCACCAT
4200 GGGGGGGGGG
Statistics
Matches: 98, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
88 98 1.00
ACGTcount: A:0.27, C:0.33, G:0.17, T:0.23
Consensus pattern (88 bp):
CCCTCACCATATGAATAGTGAGTGTGCTAACGCACCCTCTCCCCTCCTCTCAAATAAGTAACCAA
AGGCAGTCGAGTGTGCTTACGCA
Left flanking sequence: Indices 3514 -- 4013
GGCGTGAGCCCATTGTCCAATATTCCCCACTGCTGCCCCCCGAGGGAGTCTGGGCCGTGTCTCAG
TCCCAGTGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCTA
ACCAACTACCTGATACTACGTGGGCTCATCGAACAGCGCGAATTAGCTTGCTTTATGAATTATTC
AGGATTTGGAGTGAACTATTCGGCAGATTCCCACGCGTTACGCACCCGTTCGCCACTTTGCTTGC
TGTGCCCCACGCCCAGCGCACCACTCGCATATCATTTGAGTGAGTGAGCACGCGCTAGGAGGGGG
CCATTCATCTTGCCCTTCTGCCCCCACGTGGATGGATGGGGAAGCAAGCCACGTTCGACTTGCAT
GTGTTAAGCATATAGCTAGCGTTCGTTCTGAGCCAGGATCAAACTCTTTTTTTGAGTATGATCTA
TTTTGAGCATCAAATGCCCCTCACCCATATGAATGAGTGAGCGAC
Right flanking sequence: Indices 4200 -- 4699
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTCGAGCACCTAAAGGTTAGGGTT
TACTTATTGGTTTGGGGGGTTATCAGTCGAGCCTGCTTACGCATCCTCTCCCTCTCCCTTAAGGT
CGAGCACCTAAAGGTCCTATGGTCGAGCACCTAAAGGTCCTTATGGTCGAGCACCTAAAGGTTAG
GGTTTACTTATTGGTTTGGGGGGTTAACAGTCGAGCATGCTTGCGCATCCTCTCCTCTTGGGTTT
ACTTATTGCCCCACCCAATAAGTCAACCCTGGGTCGAGCACCTAA
Found at i:4206 original size:1 final size:1
Alignment explanation
Indices: 4200--4436 Score: 474
Period size: 1 Copynumber: 237.0 Consensus size: 1
4190 CCCTCACCAT
4200 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
4265 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
4330 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
4395 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
4437 TCGAGCACCT
Statistics
Matches: 236, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 236 1.00
ACGTcount: A:0.00, C:0.00, G:1.00, T:0.00
Consensus pattern (1 bp):
G
Left flanking sequence: Indices 3700 -- 4199
GAATTATTCAGGATTTGGAGTGAACTATTCGGCAGATTCCCACGCGTTACGCACCCGTTCGCCAC
TTTGCTTGCTGTGCCCCACGCCCAGCGCACCACTCGCATATCATTTGAGTGAGTGAGCACGCGCT
AGGAGGGGGCCATTCATCTTGCCCTTCTGCCCCCACGTGGATGGATGGGGAAGCAAGCCACGTTC
GACTTGCATGTGTTAAGCATATAGCTAGCGTTCGTTCTGAGCCAGGATCAAACTCTTTTTTTGAG
TATGATCTATTTTGAGCATCAAATGCCCCTCACCCATATGAATGAGTGAGCGACCCCTCACCATA
TGAATAGTGAGTGTGCTAACGCACCCTCTCCCCTCCTCTCAAATAAGTAACCAAAGGCAGTCGAG
TGTGCTTACGCACCCTCACCATATGAATAGTGAGTGTGCTAACGCACCCTCTCCCCTCCTCTCAA
ATAAGTAACCAAAGGCAGTCGAGTGTGCTTACGCACCCTCACCAT
Right flanking sequence: Indices 4437 -- 4936
TCGAGCACCTAAAGGTTAGGGTTTACTTATTGGTTTGGGGGGTTATCAGTCGAGCCTGCTTACGC
ATCCTCTCCCTCTCCCTTAAGGTCGAGCACCTAAAGGTCCTATGGTCGAGCACCTAAAGGTCCTT
ATGGTCGAGCACCTAAAGGTTAGGGTTTACTTATTGGTTTGGGGGGTTAACAGTCGAGCATGCTT
GCGCATCCTCTCCTCTTGGGTTTACTTATTGCCCCACCCAATAAGTCAACCCTGGGTCGAGCACC
TAAAGGTTAGGGTTTACTTATTGGTTTGGGGGGTTATCAGTCGAGCCTGCTTACGCATCCTTAAC
AGTCGAGCACCTAAAGGTCCTTATCAGTCGAGCACCTAAAGGTTAGGGTTTACTTATTGGTTTGG
GGGGTTAACAGTCGAGCATGCTTGCGCATCCTCTCCTCTCCTTAACAGTCGAGCACCTAAAGGTC
CTCTCCTCTCCTTATCAGTCGAGCCCCCTAAAGGGTCCTTAACAG
Found at i:4574 original size:24 final size:24
Alignment explanation
Indices: 4516--4586 Score: 126
Period size: 24 Copynumber: 3.0 Consensus size: 24
4506 TCTCCCTCTC
*
4516 CCTTAAGGTCGAGCACCTAAAGGT
1 CCTTATGGTCGAGCACCTAAAGGT
4540 CC-TATGGTCGAGCACCTAAAGGT
1 CCTTATGGTCGAGCACCTAAAGGT
4563 CCTTATGGTCGAGCACCTAAAGGT
1 CCTTATGGTCGAGCACCTAAAGGT
4587 TAGGGTTTAC
Statistics
Matches: 45, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
23 22 0.49
24 23 0.51
ACGTcount: A:0.27, C:0.25, G:0.25, T:0.23
Consensus pattern (24 bp):
CCTTATGGTCGAGCACCTAAAGGT
Left flanking sequence: Indices 4016 -- 4515
CTCACCATATGAATAGTGAGTGTGCTAACGCACCCTCTCCCCTCCTCTCAAATAAGTAACCAAAG
GCAGTCGAGTGTGCTTACGCACCCTCACCATATGAATAGTGAGTGTGCTAACGCACCCTCTCCCC
TCCTCTCAAATAAGTAACCAAAGGCAGTCGAGTGTGCTTACGCACCCTCACCATGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTCGAGCACCTAAAGGTTAGGGTTTACTTATTGGT
TTGGGGGGTTATCAGTCGAGCCTGCTTACGCATCCTCTCCCTCTC
Right flanking sequence: Indices 4587 -- 5086
TAGGGTTTACTTATTGGTTTGGGGGGTTAACAGTCGAGCATGCTTGCGCATCCTCTCCTCTTGGG
TTTACTTATTGCCCCACCCAATAAGTCAACCCTGGGTCGAGCACCTAAAGGTTAGGGTTTACTTA
TTGGTTTGGGGGGTTATCAGTCGAGCCTGCTTACGCATCCTTAACAGTCGAGCACCTAAAGGTCC
TTATCAGTCGAGCACCTAAAGGTTAGGGTTTACTTATTGGTTTGGGGGGTTAACAGTCGAGCATG
CTTGCGCATCCTCTCCTCTCCTTAACAGTCGAGCACCTAAAGGTCCTCTCCTCTCCTTATCAGTC
GAGCCCCCTAAAGGGTCCTTAACAGTCGAGCATGCTTGCGCATCCTTATCAGTCGAGCACCTAAA
GGTCCTTAACAGTCGAGCCTGCTTACGCATCCTTATGGTCGAGCGGCCTAACGGCACCTTATGGT
CGAGCAACTAAAGTTGAAATTGACTTATTGGGTGGGGGGGGTTAT
Found at i:4789 original size:25 final size:25
Alignment explanation
Indices: 4754--4804 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
4744 TGCTTACGCA
4754 TCCTTAACAGTCGAGCACCTAAAGG
1 TCCTTAACAGTCGAGCACCTAAAGG
*
4779 TCCTTATCAGTCGAGCACCTAAAGG
1 TCCTTAACAGTCGAGCACCTAAAGG
4804 T
1 T
4805 TAGGGTTTAC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (25 bp):
TCCTTAACAGTCGAGCACCTAAAGG
Left flanking sequence: Indices 4254 -- 4753
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTCGAGCACCTAA
AGGTTAGGGTTTACTTATTGGTTTGGGGGGTTATCAGTCGAGCCTGCTTACGCATCCTCTCCCTC
TCCCTTAAGGTCGAGCACCTAAAGGTCCTATGGTCGAGCACCTAAAGGTCCTTATGGTCGAGCAC
CTAAAGGTTAGGGTTTACTTATTGGTTTGGGGGGTTAACAGTCGAGCATGCTTGCGCATCCTCTC
CTCTTGGGTTTACTTATTGCCCCACCCAATAAGTCAACCCTGGGTCGAGCACCTAAAGGTTAGGG
TTTACTTATTGGTTTGGGGGGTTATCAGTCGAGCCTGCTTACGCA
Right flanking sequence: Indices 4805 -- 5304
TAGGGTTTACTTATTGGTTTGGGGGGTTAACAGTCGAGCATGCTTGCGCATCCTCTCCTCTCCTT
AACAGTCGAGCACCTAAAGGTCCTCTCCTCTCCTTATCAGTCGAGCCCCCTAAAGGGTCCTTAAC
AGTCGAGCATGCTTGCGCATCCTTATCAGTCGAGCACCTAAAGGTCCTTAACAGTCGAGCCTGCT
TACGCATCCTTATGGTCGAGCGGCCTAACGGCACCTTATGGTCGAGCAACTAAAGTTGAAATTGA
CTTATTGGGTGGGGGGGGTTATCAGTCGAGCCCCGTTGCCGGTCCTCGATGGGTACGAAAAAGAT
TGTTTCATATTGGAACGTGAGATTGAATCGTATTGGGAGATCTATATAGATTCAAGTATAACTAA
AGCTAAGCATCGAAATCAACGCTGGGATCGAACCTACCTGGCATTGATACTTGGGTCGAAACCTA
CCTGGCATCGACCTCACTCGTGCATGGAGTAGCGGTTTAGAGACC
Found at i:4901 original size:35 final size:37
Alignment explanation
Indices: 4855--4930 Score: 120
Period size: 35 Copynumber: 2.1 Consensus size: 37
4845 TGCTTGCGCA
4855 TCCTCTCCTCTCCTTAACAGTCGAG-CACCTAAA-GG
1 TCCTCTCCTCTCCTTAACAGTCGAGCCACCTAAAGGG
* *
4890 TCCTCTCCTCTCCTTATCAGTCGAGCCCCCTAAAGGG
1 TCCTCTCCTCTCCTTAACAGTCGAGCCACCTAAAGGG
4927 TCCT
1 TCCT
4931 TAACAGTCGA
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
35 24 0.65
36 7 0.19
37 6 0.16
ACGTcount: A:0.18, C:0.39, G:0.14, T:0.28
Consensus pattern (37 bp):
TCCTCTCCTCTCCTTAACAGTCGAGCCACCTAAAGGG
Left flanking sequence: Indices 4355 -- 4854
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGTCGAGCACCTAAAGGTTAGGGTTTACTTATTGGTTTGGGGGGTTATCA
GTCGAGCCTGCTTACGCATCCTCTCCCTCTCCCTTAAGGTCGAGCACCTAAAGGTCCTATGGTCG
AGCACCTAAAGGTCCTTATGGTCGAGCACCTAAAGGTTAGGGTTTACTTATTGGTTTGGGGGGTT
AACAGTCGAGCATGCTTGCGCATCCTCTCCTCTTGGGTTTACTTATTGCCCCACCCAATAAGTCA
ACCCTGGGTCGAGCACCTAAAGGTTAGGGTTTACTTATTGGTTTGGGGGGTTATCAGTCGAGCCT
GCTTACGCATCCTTAACAGTCGAGCACCTAAAGGTCCTTATCAGTCGAGCACCTAAAGGTTAGGG
TTTACTTATTGGTTTGGGGGGTTAACAGTCGAGCATGCTTGCGCA
Right flanking sequence: Indices 4931 -- 5430
TAACAGTCGAGCATGCTTGCGCATCCTTATCAGTCGAGCACCTAAAGGTCCTTAACAGTCGAGCC
TGCTTACGCATCCTTATGGTCGAGCGGCCTAACGGCACCTTATGGTCGAGCAACTAAAGTTGAAA
TTGACTTATTGGGTGGGGGGGGTTATCAGTCGAGCCCCGTTGCCGGTCCTCGATGGGTACGAAAA
AGATTGTTTCATATTGGAACGTGAGATTGAATCGTATTGGGAGATCTATATAGATTCAAGTATAA
CTAAAGCTAAGCATCGAAATCAACGCTGGGATCGAACCTACCTGGCATTGATACTTGGGTCGAAA
CCTACCTGGCATCGACCTCACTCGTGCATGGAGTAGCGGTTTAGAGACCCGAGAATGCATGGGCA
CACACCTGGATTGCATATGACTGACTCATTGCGCATAACCTGGCGTTATATATGATTATCCACCA
TATCACCTCTGAGGTAAGTCCTTTCTTTGATCCTCTCGGTCGTAG
Found at i:4938 original size:27 final size:27
Alignment explanation
Indices: 4900--4995 Score: 81
Period size: 27 Copynumber: 3.6 Consensus size: 27
4890 TCCTCTCCTC
* *
4900 TCCTTATCAGTCGAGCCCCCTAAAGGG
1 TCCTTAACAGTCGAGCCACCTAAAGGG
* *** **
4927 TCCTTAACAGTCGAG-CATGCTTGCGCA
1 TCCTTAACAGTCGAGCCA-CCTAAAGGG
*
4954 TCCTTATCAGTCGAG-CACCTAAA-GG
1 TCCTTAACAGTCGAGCCACCTAAAGGG
4979 TCCTTAACAGTCGAGCC
1 TCCTTAACAGTCGAGCC
4996 TGCTTACGCA
Statistics
Matches: 51, Mismatches: 16, Indels: 5
0.71 0.22 0.07
Matches are distributed among these distances:
25 14 0.27
26 4 0.08
27 33 0.65
ACGTcount: A:0.24, C:0.31, G:0.21, T:0.24
Consensus pattern (27 bp):
TCCTTAACAGTCGAGCCACCTAAAGGG
Left flanking sequence: Indices 4400 -- 4899
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTCGAGCACCTAAAGGTTAGGGTTTACTT
ATTGGTTTGGGGGGTTATCAGTCGAGCCTGCTTACGCATCCTCTCCCTCTCCCTTAAGGTCGAGC
ACCTAAAGGTCCTATGGTCGAGCACCTAAAGGTCCTTATGGTCGAGCACCTAAAGGTTAGGGTTT
ACTTATTGGTTTGGGGGGTTAACAGTCGAGCATGCTTGCGCATCCTCTCCTCTTGGGTTTACTTA
TTGCCCCACCCAATAAGTCAACCCTGGGTCGAGCACCTAAAGGTTAGGGTTTACTTATTGGTTTG
GGGGGTTATCAGTCGAGCCTGCTTACGCATCCTTAACAGTCGAGCACCTAAAGGTCCTTATCAGT
CGAGCACCTAAAGGTTAGGGTTTACTTATTGGTTTGGGGGGTTAACAGTCGAGCATGCTTGCGCA
TCCTCTCCTCTCCTTAACAGTCGAGCACCTAAAGGTCCTCTCCTC
Right flanking sequence: Indices 4996 -- 5495
TGCTTACGCATCCTTATGGTCGAGCGGCCTAACGGCACCTTATGGTCGAGCAACTAAAGTTGAAA
TTGACTTATTGGGTGGGGGGGGTTATCAGTCGAGCCCCGTTGCCGGTCCTCGATGGGTACGAAAA
AGATTGTTTCATATTGGAACGTGAGATTGAATCGTATTGGGAGATCTATATAGATTCAAGTATAA
CTAAAGCTAAGCATCGAAATCAACGCTGGGATCGAACCTACCTGGCATTGATACTTGGGTCGAAA
CCTACCTGGCATCGACCTCACTCGTGCATGGAGTAGCGGTTTAGAGACCCGAGAATGCATGGGCA
CACACCTGGATTGCATATGACTGACTCATTGCGCATAACCTGGCGTTATATATGATTATCCACCA
TATCACCTCTGAGGTAAGTCCTTTCTTTGATCCTCTCGGTCGTAGCTGGGAACACCTCTCTATCT
AAGCTGGGTCACTTCTTTTCTTATATTCGGAGTCTGTCTGTTCTG
Found at i:5027 original size:52 final size:53
Alignment explanation
Indices: 4900--5020 Score: 183
Period size: 52 Copynumber: 2.3 Consensus size: 53
4890 TCCTCTCCTC
* *
4900 TCCTTATCAGTCGAGCCCCCTAAAGGGTCCTTAACAGTCGAGCATGCTTGCGCA
1 TCCTTATCAGTCGAG-CACCTAAAGGGTCCTTAACAGTCGAGCATGCTTACGCA
*
4954 TCCTTATCAGTCGAGCACCTAAA-GGTCCTTAACAGTCGAGCCTGCTTACGCA
1 TCCTTATCAGTCGAGCACCTAAAGGGTCCTTAACAGTCGAGCATGCTTACGCA
*
5006 TCCTTAT-GGTCGAGC
1 TCCTTATCAGTCGAGC
5021 GGCCTAACGG
Statistics
Matches: 63, Mismatches: 4, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
51 7 0.11
52 34 0.54
53 7 0.11
54 15 0.24
ACGTcount: A:0.22, C:0.31, G:0.21, T:0.26
Consensus pattern (53 bp):
TCCTTATCAGTCGAGCACCTAAAGGGTCCTTAACAGTCGAGCATGCTTACGCA
Left flanking sequence: Indices 4400 -- 4899
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTCGAGCACCTAAAGGTTAGGGTTTACTT
ATTGGTTTGGGGGGTTATCAGTCGAGCCTGCTTACGCATCCTCTCCCTCTCCCTTAAGGTCGAGC
ACCTAAAGGTCCTATGGTCGAGCACCTAAAGGTCCTTATGGTCGAGCACCTAAAGGTTAGGGTTT
ACTTATTGGTTTGGGGGGTTAACAGTCGAGCATGCTTGCGCATCCTCTCCTCTTGGGTTTACTTA
TTGCCCCACCCAATAAGTCAACCCTGGGTCGAGCACCTAAAGGTTAGGGTTTACTTATTGGTTTG
GGGGGTTATCAGTCGAGCCTGCTTACGCATCCTTAACAGTCGAGCACCTAAAGGTCCTTATCAGT
CGAGCACCTAAAGGTTAGGGTTTACTTATTGGTTTGGGGGGTTAACAGTCGAGCATGCTTGCGCA
TCCTCTCCTCTCCTTAACAGTCGAGCACCTAAAGGTCCTCTCCTC
Right flanking sequence: Indices 5021 -- 5520
GGCCTAACGGCACCTTATGGTCGAGCAACTAAAGTTGAAATTGACTTATTGGGTGGGGGGGGTTA
TCAGTCGAGCCCCGTTGCCGGTCCTCGATGGGTACGAAAAAGATTGTTTCATATTGGAACGTGAG
ATTGAATCGTATTGGGAGATCTATATAGATTCAAGTATAACTAAAGCTAAGCATCGAAATCAACG
CTGGGATCGAACCTACCTGGCATTGATACTTGGGTCGAAACCTACCTGGCATCGACCTCACTCGT
GCATGGAGTAGCGGTTTAGAGACCCGAGAATGCATGGGCACACACCTGGATTGCATATGACTGAC
TCATTGCGCATAACCTGGCGTTATATATGATTATCCACCATATCACCTCTGAGGTAAGTCCTTTC
TTTGATCCTCTCGGTCGTAGCTGGGAACACCTCTCTATCTAAGCTGGGTCACTTCTTTTCTTATA
TTCGGAGTCTGTCTGTTCTGGTTTGCTTGGCTATAGGCTGATCGG
Found at i:6588 original size:51 final size:51
Alignment explanation
Indices: 6512--6615 Score: 208
Period size: 51 Copynumber: 2.0 Consensus size: 51
6502 TGGCGACATC
6512 TCCCGGCCAGCAGCAAATATATACCGTAAAGCGGCACATCATATTTCTCTA
1 TCCCGGCCAGCAGCAAATATATACCGTAAAGCGGCACATCATATTTCTCTA
6563 TCCCGGCCAGCAGCAAATATATACCGTAAAGCGGCACATCATATTTCTCTA
1 TCCCGGCCAGCAGCAAATATATACCGTAAAGCGGCACATCATATTTCTCTA
6614 TC
1 TC
6616 TATTGGTCCA
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 53 1.00
ACGTcount: A:0.31, C:0.30, G:0.15, T:0.24
Consensus pattern (51 bp):
TCCCGGCCAGCAGCAAATATATACCGTAAAGCGGCACATCATATTTCTCTA
Left flanking sequence: Indices 6012 -- 6511
GGGGAACGGAAAGCATCCTAAATCACGTCATGGTAAAGTAAACAGAAAGCGTAATGTATGAACTG
AAAGGGTGGGGCGGGTACAAAAAGGATGAATAACGTAATGGGATTGGTAACTTCCAAATGTATGT
TGATAGGGTTGGTTCCTTTACTGAAAGCGTAATGGGGTATTGAATGTTGTACTGGGGAATGACAA
CTGACTGAATGCGAGACTGGGGGCGTAATGCGGGGCGTATCATCCATCGAGCGGTAGCAATCCAT
CCAACCTCATGGGGCAAGCGTAAGAACCCGGCAAGCAGCACACCTTCGCATACAACATATCATAT
GGGGACCACCCTCTGGCGACATCTACCGGCAAGCAACAAATCATATACCTATCTCTATTGAAACA
CCTTTACAACACCTCTGTTCACTGAAACCGGAAAGCAACACAAACTATACCTACCTCTCGCTATC
GTTACACCTTTGCATCCAACATGATCTGGACCCTTTGGCGACATC
Right flanking sequence: Indices 6616 -- 7115
TATTGGTCCACCTCACACGGCTACATCATCCATCCGTTGTACCACCCCTATTATCTATCTCTCTC
GTCCTACCCCGGCATAACTAGTCCTCCCCCCCCCACCCAATAAGTAAAATAAAGTAAATAAAAGC
AAGCAATCGCCAACGTCAATCAACATTGAACATCAACATCGAATTCATATCCACCTTGGTGGGTG
CTGCTATGTCTGGCTTTAAGGGGGGAGGCTATGTGTGCTGCTACTTGTGGTGCTTATTGTGACTG
GCGAGTATGTCTCTGTCTGGGTGCTACGCTTTTGGTGTTCTATGCGCAGGTGATGAAGTGCTTCC
AGTACGTGTAGCTCAATTAGGCCTCCTCAAGTGTATGGGAATCGGGATCAACGTAGCTCAATAAT
AAAGCATAATTGTGTCACTTCATCATTGAATCTCTACGCGTAACCTACCTCATTGTGGAACCCTT
CCTAATCGCGGAACCCTCATCTCACCTCATCATTGTGTCACTTTA
Found at i:11060 original size:13 final size:13
Alignment explanation
Indices: 11042--11067 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
11032 GGGGTTCGAC
11042 GGGAGAACCTGAG
1 GGGAGAACCTGAG
11055 GGGAGAACCTGAG
1 GGGAGAACCTGAG
11068 CAGAACAAGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.46, T:0.08
Consensus pattern (13 bp):
GGGAGAACCTGAG
Left flanking sequence: Indices 10542 -- 11041
CGAATAAAGCAATAATAAAGAAAGAAATAGCTCAATTGTGGAGGGTGCGTTAGCACGCTCGACTA
AAAGGCCGCCATCGATTTCTCGCTCATCCATCATATGCCCCCCCACCCAATAAGCAAACCCTAGA
AGCCGCGTATATTTTTTTGGCGAGAAAGGGTGGGAAGGCCGTAGGTTGGGTGGTTAAGCCAAAGG
TCTTTGAGCACATTTACACTCGACATTGCGTTTTACGCCGAGCGGACTAGGCTTATATATGTCTT
ATTTGCATATGGGGTTCAAGCAGTAAAAGGAAAGGTCTGTAGTGGCAGGCAATATTAGATATCTA
AGAATCGTCGCTTTGCGAAATCGCGAAAATGCTTTTGGAAAGAAGCCGTACTGGAGTGATCCAAG
ATCTCTGTTCTACTTAAGATTGTCATTTTGTTTCTTTTCTTTTTGGGCCAACCATCAAAGTTTTT
GGAACTATTCATACCTAGGCATTATAGGGGAGGCAGGGGTTCGAC
Right flanking sequence: Indices 11068 -- 11567
CAGAACAAGTAAGAAAGAAAAGCGACAGAGCTACGTGTTGTTTACCCTCAATCTATTTCCAAAGC
GAAGTCACTATTTACCCTGCGTGATGCGGAAGGAAGGGAACGGTTCAACGCGCGAATGAAGGAGC
TCACTCACACTCAATTGGCTGGCTCGCAAAGCTATTTGTCTTCTTGGCCGCTGTCCACGAGAGGG
AGGGTGAAGGGAAAGCCGTTCCCTATTTATTTCACCTACCCCTTCCCGAGGTTGGTCCAGTTAAG
GTCCTTAGTGAGCTATGCTCTTTTAGGGGAAGAAAGAAAGGGTCAGTCATATCTTCCCGAACCTA
ATTTTCACCCGGTAAGTTATAACCTATACAAATTAAGGTTATCCGAAGGGCAACTACGATCTATC
TATAGTGCCGTAATTCTGTCACTATAGGTCGATCGTAGTTGCCGTAATTCACTATAGAATCATCT
TTCCTCCACAAATGATCTGGTGATTCCCGAAACGCTCCGCGTTAT
Found at i:12482 original size:23 final size:24
Alignment explanation
Indices: 12427--12501 Score: 125
Period size: 24 Copynumber: 3.2 Consensus size: 24
12417 CTCGACTGTC
*
12427 AAGGACCTTTAGGTGCTCGACCCT
1 AAGGACCTTTAGGTGCTCGACCAT
12451 AAGGACCTTTAGGTGCTCGACCAT
1 AAGGACCTTTAGGTGCTCGACCAT
*
12475 -AGGACCTTTAGGTGCTCGACCTT
1 AAGGACCTTTAGGTGCTCGACCAT
12498 AAGG
1 AAGG
12502 GAGAGGGAGA
Statistics
Matches: 48, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
23 22 0.46
24 26 0.54
ACGTcount: A:0.23, C:0.25, G:0.27, T:0.25
Consensus pattern (24 bp):
AAGGACCTTTAGGTGCTCGACCAT
Left flanking sequence: Indices 11927 -- 12426
CGGCGGCGTCCGCCTGCGGTAAGGCACCACCCTGTTGTGCCAGCAGCCAACCCCGGCGTGTCAGC
TCAGTTATCCTCATCAAGCCACTTACTGTCTGTCTAGCTAGCTCCCCAATCTTCCCTTCTCAGAT
CGATGAATAAGGACCGGCAGGGGCTCGACTGCTAAGGAGAGGGCCCTCTCCCGGGGGTCGAGCGT
TCGTTACCTCACCCTATATTCTTTAGGGGCGGAGCCACTCACTATTCCGATGGTGAGGACCGGTA
GGGGCTCGACTGTCAAGGAGAGGACCGGTAGGGGCTCACCATTCCGATGGTGAGGGGTCACTCAC
TCATTCCGATGCCCACCACCCAATAAGCATCAAGGAAGGCACACTCGACTGTCAAGGACCTTTAG
GTGCTCGACCCTAAGGACCTTTAGGTGCTCGACTGTTAAGGAGAGGGAGAGGAGAGGCCCGGTAG
GGGCTCACCATTCCGATGGTGAGGACCGGTAGGGGCTCGACTGTC
Right flanking sequence: Indices 12502 -- 13001
GAGAGGGAGAGGATGCGTAAGCAGGCTCGACTGATAAGGACCCTTTAGGGGGCTCGACTGATAAG
GAGAGGAGAGGACCTTTAGGTGCTCGACCTTAAGGGAGAGGGAGAGGACCTTTAGGTGCTCGACT
GTTAAGGACCTTTAGGTGCTCGACTGATAAGGATGCGCAAGCATGCTCGACTGTTAAGGACCCTT
TAGGGGGCTCGACTGATAAGGACCTTTAGGTGCTCGACCCAGGGTTGACTTATTGGGTGGGGCAA
TAAGTAAACCCAAGAGGAGAGGACCTTTAGGTGCTCGACTGTTAAGGAGAGGAGAGGATGCGCAA
GCATGCTCGACTGTTAACCCCCCAAACCAATAAGTAAACCCTAACCTTTAGGTGCTCGACTGATA
AGGACCTTTAGGTGCTCGACTGTTAAGGATGCGTAAGCAGGCTCGACTGATAACCCCCCAAACCA
ATAAGTAAACCCTAACCTTTAGGTGCTCGACTGATAAGGACCTTT
Found at i:12586 original size:36 final size:35
Alignment explanation
Indices: 12538--12639 Score: 127
Period size: 36 Copynumber: 2.8 Consensus size: 35
12528 TCGACTGATA
*
12538 AGGACCCTTTAGGGGGCTCGACTGATAAGGAGA-GGAG
1 AGGA-CCTTTA-GGTGCTCGACTG-TAAGGAGAGGGAG
12575 AGGACCTTTAGGTGCTCGACCT-TAAGGGAGAGGGAG
1 AGGACCTTTAGGTGCTCGA-CTGTAA-GGAGAGGGAG
12611 AGGACCTTTAGGTGCTCGACTGTTAAGGA
1 AGGACCTTTAGGTGCTCGACTG-TAAGGA
12640 CCTTTAGGTG
Statistics
Matches: 59, Mismatches: 1, Indels: 11
0.83 0.01 0.15
Matches are distributed among these distances:
34 3 0.05
35 15 0.25
36 34 0.58
37 7 0.12
ACGTcount: A:0.25, C:0.17, G:0.37, T:0.21
Consensus pattern (35 bp):
AGGACCTTTAGGTGCTCGACTGTAAGGAGAGGGAG
Left flanking sequence: Indices 12038 -- 12537
CAATCTTCCCTTCTCAGATCGATGAATAAGGACCGGCAGGGGCTCGACTGCTAAGGAGAGGGCCC
TCTCCCGGGGGTCGAGCGTTCGTTACCTCACCCTATATTCTTTAGGGGCGGAGCCACTCACTATT
CCGATGGTGAGGACCGGTAGGGGCTCGACTGTCAAGGAGAGGACCGGTAGGGGCTCACCATTCCG
ATGGTGAGGGGTCACTCACTCATTCCGATGCCCACCACCCAATAAGCATCAAGGAAGGCACACTC
GACTGTCAAGGACCTTTAGGTGCTCGACCCTAAGGACCTTTAGGTGCTCGACTGTTAAGGAGAGG
GAGAGGAGAGGCCCGGTAGGGGCTCACCATTCCGATGGTGAGGACCGGTAGGGGCTCGACTGTCA
AGGACCTTTAGGTGCTCGACCCTAAGGACCTTTAGGTGCTCGACCATAGGACCTTTAGGTGCTCG
ACCTTAAGGGAGAGGGAGAGGATGCGTAAGCAGGCTCGACTGATA
Right flanking sequence: Indices 12640 -- 13139
CCTTTAGGTGCTCGACTGATAAGGATGCGCAAGCATGCTCGACTGTTAAGGACCCTTTAGGGGGC
TCGACTGATAAGGACCTTTAGGTGCTCGACCCAGGGTTGACTTATTGGGTGGGGCAATAAGTAAA
CCCAAGAGGAGAGGACCTTTAGGTGCTCGACTGTTAAGGAGAGGAGAGGATGCGCAAGCATGCTC
GACTGTTAACCCCCCAAACCAATAAGTAAACCCTAACCTTTAGGTGCTCGACTGATAAGGACCTT
TAGGTGCTCGACTGTTAAGGATGCGTAAGCAGGCTCGACTGATAACCCCCCAAACCAATAAGTAA
ACCCTAACCTTTAGGTGCTCGACTGATAAGGACCTTTAGGTGCTCGACTGTTAAGGAGAGGAGAG
GATGCGCAAGCATGCTCGACTGTTAACCCCCCAAACCAATAAGTAAACCCTAACCTTTAGGTGCT
CGACCGAAAGGATGCGTAAGCAGGCTCGACTGATAAGGACCCTCA
Found at i:12645 original size:25 final size:25
Alignment explanation
Indices: 12611--12734 Score: 140
Period size: 25 Copynumber: 4.8 Consensus size: 25
12601 GGAGAGGGAG
*
12611 AGGACCTTTAGGTGCTCGACTGTTA
1 AGGACCTTTAGGTGCTCGACTGATA
12636 AGGACCTTTAGGTGCTCGACTGATA
1 AGGACCTTTAGGTGCTCGACTGATA
* *** * *
12661 AGGATGCGCAAGCATGCTCGACTGTTA
1 AGGA-CCTTTAG-GTGCTCGACTGATA
*
12688 AGGACCCTTTAGGGGGCTCGACTGATA
1 AGGA-CCTTTA-GGTGCTCGACTGATA
12715 AGGACCTTTAGGTGCTCGAC
1 AGGACCTTTAGGTGCTCGAC
12735 CCAGGGTTGA
Statistics
Matches: 80, Mismatches: 16, Indels: 6
0.78 0.16 0.06
Matches are distributed among these distances:
25 37 0.46
26 9 0.11
27 33 0.41
28 1 0.01
ACGTcount: A:0.23, C:0.22, G:0.30, T:0.26
Consensus pattern (25 bp):
AGGACCTTTAGGTGCTCGACTGATA
Left flanking sequence: Indices 12111 -- 12610
GGGTCGAGCGTTCGTTACCTCACCCTATATTCTTTAGGGGCGGAGCCACTCACTATTCCGATGGT
GAGGACCGGTAGGGGCTCGACTGTCAAGGAGAGGACCGGTAGGGGCTCACCATTCCGATGGTGAG
GGGTCACTCACTCATTCCGATGCCCACCACCCAATAAGCATCAAGGAAGGCACACTCGACTGTCA
AGGACCTTTAGGTGCTCGACCCTAAGGACCTTTAGGTGCTCGACTGTTAAGGAGAGGGAGAGGAG
AGGCCCGGTAGGGGCTCACCATTCCGATGGTGAGGACCGGTAGGGGCTCGACTGTCAAGGACCTT
TAGGTGCTCGACCCTAAGGACCTTTAGGTGCTCGACCATAGGACCTTTAGGTGCTCGACCTTAAG
GGAGAGGGAGAGGATGCGTAAGCAGGCTCGACTGATAAGGACCCTTTAGGGGGCTCGACTGATAA
GGAGAGGAGAGGACCTTTAGGTGCTCGACCTTAAGGGAGAGGGAG
Right flanking sequence: Indices 12735 -- 13234
CCAGGGTTGACTTATTGGGTGGGGCAATAAGTAAACCCAAGAGGAGAGGACCTTTAGGTGCTCGA
CTGTTAAGGAGAGGAGAGGATGCGCAAGCATGCTCGACTGTTAACCCCCCAAACCAATAAGTAAA
CCCTAACCTTTAGGTGCTCGACTGATAAGGACCTTTAGGTGCTCGACTGTTAAGGATGCGTAAGC
AGGCTCGACTGATAACCCCCCAAACCAATAAGTAAACCCTAACCTTTAGGTGCTCGACTGATAAG
GACCTTTAGGTGCTCGACTGTTAAGGAGAGGAGAGGATGCGCAAGCATGCTCGACTGTTAACCCC
CCAAACCAATAAGTAAACCCTAACCTTTAGGTGCTCGACCGAAAGGATGCGTAAGCAGGCTCGAC
TGATAAGGACCCTCACCATATGAATAGTGAGTGACCCCTAAAGAATATAGGGCCCTTTAGGGGGC
TCGACTGATAAGGACCTTTAGGTGCTCGACCCAGGGTTGACTTAT
Found at i:12706 original size:27 final size:25
Alignment explanation
Indices: 12675--12734 Score: 84
Period size: 27 Copynumber: 2.3 Consensus size: 25
12665 TGCGCAAGCA
*
12675 TGCTCGACTGTTAAGGACCCTTTAGGG
1 TGCTCGACTGATAAGGA-CCTTTA-GG
*
12702 GGCTCGACTGATAAGGACCTTTAGG
1 TGCTCGACTGATAAGGACCTTTAGG
12727 TGCTCGAC
1 TGCTCGAC
12735 CCAGGGTTGA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
25 9 0.30
26 6 0.20
27 15 0.50
ACGTcount: A:0.20, C:0.23, G:0.30, T:0.27
Consensus pattern (25 bp):
TGCTCGACTGATAAGGACCTTTAGG
Left flanking sequence: Indices 12175 -- 12674
TGAGGACCGGTAGGGGCTCGACTGTCAAGGAGAGGACCGGTAGGGGCTCACCATTCCGATGGTGA
GGGGTCACTCACTCATTCCGATGCCCACCACCCAATAAGCATCAAGGAAGGCACACTCGACTGTC
AAGGACCTTTAGGTGCTCGACCCTAAGGACCTTTAGGTGCTCGACTGTTAAGGAGAGGGAGAGGA
GAGGCCCGGTAGGGGCTCACCATTCCGATGGTGAGGACCGGTAGGGGCTCGACTGTCAAGGACCT
TTAGGTGCTCGACCCTAAGGACCTTTAGGTGCTCGACCATAGGACCTTTAGGTGCTCGACCTTAA
GGGAGAGGGAGAGGATGCGTAAGCAGGCTCGACTGATAAGGACCCTTTAGGGGGCTCGACTGATA
AGGAGAGGAGAGGACCTTTAGGTGCTCGACCTTAAGGGAGAGGGAGAGGACCTTTAGGTGCTCGA
CTGTTAAGGACCTTTAGGTGCTCGACTGATAAGGATGCGCAAGCA
Right flanking sequence: Indices 12735 -- 13234
CCAGGGTTGACTTATTGGGTGGGGCAATAAGTAAACCCAAGAGGAGAGGACCTTTAGGTGCTCGA
CTGTTAAGGAGAGGAGAGGATGCGCAAGCATGCTCGACTGTTAACCCCCCAAACCAATAAGTAAA
CCCTAACCTTTAGGTGCTCGACTGATAAGGACCTTTAGGTGCTCGACTGTTAAGGATGCGTAAGC
AGGCTCGACTGATAACCCCCCAAACCAATAAGTAAACCCTAACCTTTAGGTGCTCGACTGATAAG
GACCTTTAGGTGCTCGACTGTTAAGGAGAGGAGAGGATGCGCAAGCATGCTCGACTGTTAACCCC
CCAAACCAATAAGTAAACCCTAACCTTTAGGTGCTCGACCGAAAGGATGCGTAAGCAGGCTCGAC
TGATAAGGACCCTCACCATATGAATAGTGAGTGACCCCTAAAGAATATAGGGCCCTTTAGGGGGC
TCGACTGATAAGGACCTTTAGGTGCTCGACCCAGGGTTGACTTAT
Found at i:12904 original size:25 final size:25
Alignment explanation
Indices: 12870--12920 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
12860 GTAAACCCTA
12870 ACCTTTAGGTGCTCGACTGATAAGG
1 ACCTTTAGGTGCTCGACTGATAAGG
*
12895 ACCTTTAGGTGCTCGACTGTTAAGG
1 ACCTTTAGGTGCTCGACTGATAAGG
12920 A
1 A
12921 TGCGTAAGCA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.29
Consensus pattern (25 bp):
ACCTTTAGGTGCTCGACTGATAAGG
Left flanking sequence: Indices 12370 -- 12869
GAGGCCCGGTAGGGGCTCACCATTCCGATGGTGAGGACCGGTAGGGGCTCGACTGTCAAGGACCT
TTAGGTGCTCGACCCTAAGGACCTTTAGGTGCTCGACCATAGGACCTTTAGGTGCTCGACCTTAA
GGGAGAGGGAGAGGATGCGTAAGCAGGCTCGACTGATAAGGACCCTTTAGGGGGCTCGACTGATA
AGGAGAGGAGAGGACCTTTAGGTGCTCGACCTTAAGGGAGAGGGAGAGGACCTTTAGGTGCTCGA
CTGTTAAGGACCTTTAGGTGCTCGACTGATAAGGATGCGCAAGCATGCTCGACTGTTAAGGACCC
TTTAGGGGGCTCGACTGATAAGGACCTTTAGGTGCTCGACCCAGGGTTGACTTATTGGGTGGGGC
AATAAGTAAACCCAAGAGGAGAGGACCTTTAGGTGCTCGACTGTTAAGGAGAGGAGAGGATGCGC
AAGCATGCTCGACTGTTAACCCCCCAAACCAATAAGTAAACCCTA
Right flanking sequence: Indices 12921 -- 13420
TGCGTAAGCAGGCTCGACTGATAACCCCCCAAACCAATAAGTAAACCCTAACCTTTAGGTGCTCG
ACTGATAAGGACCTTTAGGTGCTCGACTGTTAAGGAGAGGAGAGGATGCGCAAGCATGCTCGACT
GTTAACCCCCCAAACCAATAAGTAAACCCTAACCTTTAGGTGCTCGACCGAAAGGATGCGTAAGC
AGGCTCGACTGATAAGGACCCTCACCATATGAATAGTGAGTGACCCCTAAAGAATATAGGGCCCT
TTAGGGGGCTCGACTGATAAGGACCTTTAGGTGCTCGACCCAGGGTTGACTTATTGGGTGGGGCA
ATAAGTAAACCCAAGAGGAGAGGACCTTTAGGTGCTCGACCATAGGACCTTTAGGTGCTCGACCT
TAAGGGAGAGGGAGAGGATGCGTAAGCAGGCTCGACTGATAAGGACCCTCACCATATGAATAGTG
AGTGACCCCTAAAGAATATAGGGCCCTTTAGGGGGCTCGACTGAT
Found at i:12918 original size:111 final size:111
Alignment explanation
Indices: 12781--13106 Score: 539
Period size: 101 Copynumber: 3.0 Consensus size: 111
12771 CCAAGAGGAG
12781 AGGACCTTTAGGTGCTCGACTGTTAAGGAGAGGAGAGGATGCGCAAGCATGCTCGACTGTTAACC
1 AGGACCTTTAGGTGCTCGACTGTTAAGGAGAGGAGAGGATGCGCAAGCATGCTCGACTGTTAACC
12846 CCCCAAACCAATAAGTAAACCCTAACCTTTAGGTGCTCGACTGATA
66 CCCCAAACCAATAAGTAAACCCTAACCTTTAGGTGCTCGACTGATA
* * *
12892 AGGACCTTTAGGTGCTCGACTGTT---------A-AGGATGCGTAAGCAGGCTCGACTGATAACC
1 AGGACCTTTAGGTGCTCGACTGTTAAGGAGAGGAGAGGATGCGCAAGCATGCTCGACTGTTAACC
12947 CCCCAAACCAATAAGTAAACCCTAACCTTTAGGTGCTCGACTGATA
66 CCCCAAACCAATAAGTAAACCCTAACCTTTAGGTGCTCGACTGATA
12993 AGGACCTTTAGGTGCTCGACTGTTAAGGAGAGGAGAGGATGCGCAAGCATGCTCGACTGTTAACC
1 AGGACCTTTAGGTGCTCGACTGTTAAGGAGAGGAGAGGATGCGCAAGCATGCTCGACTGTTAACC
*
13058 CCCCAAACCAATAAGTAAACCCTAACCTTTAGGTGCTCGACCGA-A
66 CCCCAAACCAATAAGTAAACCCTAACCTTTAGGTGCTCGACTGATA
13103 AGGA
1 AGGA
13107 TGCGTAAGCA
Statistics
Matches: 198, Mismatches: 7, Indels: 21
0.88 0.03 0.09
Matches are distributed among these distances:
101 97 0.49
102 1 0.01
110 6 0.03
111 94 0.47
ACGTcount: A:0.30, C:0.25, G:0.24, T:0.21
Consensus pattern (111 bp):
AGGACCTTTAGGTGCTCGACTGTTAAGGAGAGGAGAGGATGCGCAAGCATGCTCGACTGTTAACC
CCCCAAACCAATAAGTAAACCCTAACCTTTAGGTGCTCGACTGATA
Left flanking sequence: Indices 12281 -- 12780
TCAAGGAAGGCACACTCGACTGTCAAGGACCTTTAGGTGCTCGACCCTAAGGACCTTTAGGTGCT
CGACTGTTAAGGAGAGGGAGAGGAGAGGCCCGGTAGGGGCTCACCATTCCGATGGTGAGGACCGG
TAGGGGCTCGACTGTCAAGGACCTTTAGGTGCTCGACCCTAAGGACCTTTAGGTGCTCGACCATA
GGACCTTTAGGTGCTCGACCTTAAGGGAGAGGGAGAGGATGCGTAAGCAGGCTCGACTGATAAGG
ACCCTTTAGGGGGCTCGACTGATAAGGAGAGGAGAGGACCTTTAGGTGCTCGACCTTAAGGGAGA
GGGAGAGGACCTTTAGGTGCTCGACTGTTAAGGACCTTTAGGTGCTCGACTGATAAGGATGCGCA
AGCATGCTCGACTGTTAAGGACCCTTTAGGGGGCTCGACTGATAAGGACCTTTAGGTGCTCGACC
CAGGGTTGACTTATTGGGTGGGGCAATAAGTAAACCCAAGAGGAG
Right flanking sequence: Indices 13107 -- 13606
TGCGTAAGCAGGCTCGACTGATAAGGACCCTCACCATATGAATAGTGAGTGACCCCTAAAGAATA
TAGGGCCCTTTAGGGGGCTCGACTGATAAGGACCTTTAGGTGCTCGACCCAGGGTTGACTTATTG
GGTGGGGCAATAAGTAAACCCAAGAGGAGAGGACCTTTAGGTGCTCGACCATAGGACCTTTAGGT
GCTCGACCTTAAGGGAGAGGGAGAGGATGCGTAAGCAGGCTCGACTGATAAGGACCCTCACCATA
TGAATAGTGAGTGACCCCTAAAGAATATAGGGCCCTTTAGGGGGCTCGACTGATAAGGAGAGGAG
AGGACCTTTAGGTGCTCGACCTTAAGGGAGAGGGAGAGGAGAGGAGAGGCCCGGTAGGGGCTCAC
CATTCCGATGGTGAGGGATTTATCAGTCGATCCCTTATAGTAGCCGGCCACGCAAGGTTATACCT
CCCCCCCCCCCCTACCTCCTATAGTAGGTAGCAAGGGGTATAACC
Found at i:13005 original size:25 final size:25
Alignment explanation
Indices: 12971--13021 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
12961 GTAAACCCTA
12971 ACCTTTAGGTGCTCGACTGATAAGG
1 ACCTTTAGGTGCTCGACTGATAAGG
*
12996 ACCTTTAGGTGCTCGACTGTTAAGG
1 ACCTTTAGGTGCTCGACTGATAAGG
13021 A
1 A
13022 GAGGAGAGGA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.29
Consensus pattern (25 bp):
ACCTTTAGGTGCTCGACTGATAAGG
Left flanking sequence: Indices 12471 -- 12970
CCATAGGACCTTTAGGTGCTCGACCTTAAGGGAGAGGGAGAGGATGCGTAAGCAGGCTCGACTGA
TAAGGACCCTTTAGGGGGCTCGACTGATAAGGAGAGGAGAGGACCTTTAGGTGCTCGACCTTAAG
GGAGAGGGAGAGGACCTTTAGGTGCTCGACTGTTAAGGACCTTTAGGTGCTCGACTGATAAGGAT
GCGCAAGCATGCTCGACTGTTAAGGACCCTTTAGGGGGCTCGACTGATAAGGACCTTTAGGTGCT
CGACCCAGGGTTGACTTATTGGGTGGGGCAATAAGTAAACCCAAGAGGAGAGGACCTTTAGGTGC
TCGACTGTTAAGGAGAGGAGAGGATGCGCAAGCATGCTCGACTGTTAACCCCCCAAACCAATAAG
TAAACCCTAACCTTTAGGTGCTCGACTGATAAGGACCTTTAGGTGCTCGACTGTTAAGGATGCGT
AAGCAGGCTCGACTGATAACCCCCCAAACCAATAAGTAAACCCTA
Right flanking sequence: Indices 13022 -- 13521
GAGGAGAGGATGCGCAAGCATGCTCGACTGTTAACCCCCCAAACCAATAAGTAAACCCTAACCTT
TAGGTGCTCGACCGAAAGGATGCGTAAGCAGGCTCGACTGATAAGGACCCTCACCATATGAATAG
TGAGTGACCCCTAAAGAATATAGGGCCCTTTAGGGGGCTCGACTGATAAGGACCTTTAGGTGCTC
GACCCAGGGTTGACTTATTGGGTGGGGCAATAAGTAAACCCAAGAGGAGAGGACCTTTAGGTGCT
CGACCATAGGACCTTTAGGTGCTCGACCTTAAGGGAGAGGGAGAGGATGCGTAAGCAGGCTCGAC
TGATAAGGACCCTCACCATATGAATAGTGAGTGACCCCTAAAGAATATAGGGCCCTTTAGGGGGC
TCGACTGATAAGGAGAGGAGAGGACCTTTAGGTGCTCGACCTTAAGGGAGAGGGAGAGGAGAGGA
GAGGCCCGGTAGGGGCTCACCATTCCGATGGTGAGGGATTTATCA
Found at i:13296 original size:23 final size:23
Alignment explanation
Indices: 13266--13309 Score: 88
Period size: 23 Copynumber: 1.9 Consensus size: 23
13256 CCAAGAGGAG
13266 AGGACCTTTAGGTGCTCGACCAT
1 AGGACCTTTAGGTGCTCGACCAT
13289 AGGACCTTTAGGTGCTCGACC
1 AGGACCTTTAGGTGCTCGACC
13310 TTAAGGGAGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.20, C:0.27, G:0.27, T:0.25
Consensus pattern (23 bp):
AGGACCTTTAGGTGCTCGACCAT
Left flanking sequence: Indices 12766 -- 13265
TAAACCCAAGAGGAGAGGACCTTTAGGTGCTCGACTGTTAAGGAGAGGAGAGGATGCGCAAGCAT
GCTCGACTGTTAACCCCCCAAACCAATAAGTAAACCCTAACCTTTAGGTGCTCGACTGATAAGGA
CCTTTAGGTGCTCGACTGTTAAGGATGCGTAAGCAGGCTCGACTGATAACCCCCCAAACCAATAA
GTAAACCCTAACCTTTAGGTGCTCGACTGATAAGGACCTTTAGGTGCTCGACTGTTAAGGAGAGG
AGAGGATGCGCAAGCATGCTCGACTGTTAACCCCCCAAACCAATAAGTAAACCCTAACCTTTAGG
TGCTCGACCGAAAGGATGCGTAAGCAGGCTCGACTGATAAGGACCCTCACCATATGAATAGTGAG
TGACCCCTAAAGAATATAGGGCCCTTTAGGGGGCTCGACTGATAAGGACCTTTAGGTGCTCGACC
CAGGGTTGACTTATTGGGTGGGGCAATAAGTAAACCCAAGAGGAG
Right flanking sequence: Indices 13310 -- 13809
TTAAGGGAGAGGGAGAGGATGCGTAAGCAGGCTCGACTGATAAGGACCCTCACCATATGAATAGT
GAGTGACCCCTAAAGAATATAGGGCCCTTTAGGGGGCTCGACTGATAAGGAGAGGAGAGGACCTT
TAGGTGCTCGACCTTAAGGGAGAGGGAGAGGAGAGGAGAGGCCCGGTAGGGGCTCACCATTCCGA
TGGTGAGGGATTTATCAGTCGATCCCTTATAGTAGCCGGCCACGCAAGGTTATACCTCCCCCCCC
CCCCTACCTCCTATAGTAGGTAGCAAGGGGTATAACCTTATAACCGGTATAACCGATAGGGCAAA
AAAGTATTCACCCCCTATTCAATAAGTGAACGGGCGAAGCGCTATGCCTTCCCCTATAGCCTGAC
TAGCTAGAGGTAGGGAAAGGTATAACCTCATCCGGAGAAAAACTGCTCCCCTATCGAATGGATAA
ATCGGGTTTCCCAATGCTCTTCCACGTATCCGAGATACGCCACCT
Found at i:15023 original size:51 final size:51
Alignment explanation
Indices: 14947--15047 Score: 202
Period size: 51 Copynumber: 2.0 Consensus size: 51
14937 GCGAATCCGT
14947 CCACGCACGGCCAAACACCAAGGGTGGCCCGCCTGGAACAGTCATGTTTGC
1 CCACGCACGGCCAAACACCAAGGGTGGCCCGCCTGGAACAGTCATGTTTGC
14998 CCACGCACGGCCAAACACCAAGGGTGGCCCGCCTGGAACAGTCATGTTTG
1 CCACGCACGGCCAAACACCAAGGGTGGCCCGCCTGGAACAGTCATGTTTG
15048 ACTGGGCTTA
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 50 1.00
ACGTcount: A:0.24, C:0.35, G:0.28, T:0.14
Consensus pattern (51 bp):
CCACGCACGGCCAAACACCAAGGGTGGCCCGCCTGGAACAGTCATGTTTGC
Left flanking sequence: Indices 14447 -- 14946
CACCATAATTCGACTGCTGTTGATCCCAAACTTCTCCGAACTCCTAAACATAAGGTGAAACCACA
AGGTTATACCGATACCTACCTTCCCCTCGACTATAGGGAAGGTATAACCGATAGCCGATTAGTTA
GGGGGTTATTGTGGGTGGCCCCCCCCCCACCTTTCGGGGCAGGGGGGCCGCCCGATTCGACCATG
CATGGTATCGATATAATGGGGCAGCCGAGCTGATCTGCTTCCAATTGGAGAAAGCCGCTTTCACC
AAGTCAGCCACCTTTCGGTGCGGGTCACGTAACCCTATCCGCGCCATTACAGCTCGGCCTTCGCT
TTTTGAGGCTTCCTCTACCCACATATTTATGTGCCCGCAGCACCTCCATATGGAGAAATATGGGC
TTACCGTGTTCCATTAATAGCACCTGACCTATGCCGATTTTGGCGGACCGTGCTCTACCCCGGTG
GACTCATGCGGTTCCGACGTGCCCAGAGGCCAGAGGCGAATCCGT
Right flanking sequence: Indices 15048 -- 15547
ACTGGGCTTATACACATTCGCTTACTTACGCTGTCCCCCCTCAGCTAACCCTAGCCCCCCCAGTT
ATTGGGGGGGGGGGTACGTCGTCCCCGAGGCTTCACACCAAGTCTTTGCAACAGTAGGGGCATGC
TTGAGTAGGGTCAGGCAGAACCGTCGTTGCCTGATGGGAACCTCCCCCATATTGCTACCAATGTC
TTCGTGTCGCGCAACCTCTTAGCATTACACCACTGGATCCCCAATCCTTTGCCTGCTGTGCAGTG
ACAGTACCAATATCCACTAATCGTTGTTTCCAGATACGGTTGCCGGTTGACATCTCTTCTGATTC
GTCAATACGAGAAGCGAATTGTCGTGTAAAGGAATCAATATCTCGACATAAGCCAAGAGGCAGAT
CTTGTGCCACTCCACCTGGTCGTATGAAACTGGCATGCATCCTGGCTCCCGGGACTCTTTCATGG
AATTCCAACGATCTCTCCCGCTCCTCAGAAGCCCACAGGGACGGA
Found at i:16873 original size:16 final size:16
Alignment explanation
Indices: 16854--16912 Score: 68
Period size: 16 Copynumber: 3.8 Consensus size: 16
16844 GAGTATAGCA
16854 TCCCATGAGTAGAACT
1 TCCCATGAGTAGAACT
* **
16870 TCCCATAAGTAGGCCT
1 TCCCATGAGTAGAACT
*
16886 T--CATGAATAGAACT
1 TCCCATGAGTAGAACT
16900 TCCCATGAGTAGA
1 TCCCATGAGTAGA
16913 GCTTTTTTCA
Statistics
Matches: 33, Mismatches: 8, Indels: 4
0.73 0.18 0.09
Matches are distributed among these distances:
14 10 0.30
16 23 0.70
ACGTcount: A:0.32, C:0.24, G:0.19, T:0.25
Consensus pattern (16 bp):
TCCCATGAGTAGAACT
Left flanking sequence: Indices 16354 -- 16853
TAGCAGACTTAGCTGTATGGGCATATGTCATGATGCATTCATGAATTATAGCAGTAATTATGCAT
TCATTCGTTATATACGTAATTACGCTATCGAATAAACGGTAACGAGAATCCACGCATCCTATCTC
ACCCGATATGACTCCAGGTGTATTCGGAGATGCATGTATTATATATGTTGCTGTTGCATTAGTCA
TTCATTATAGACTGAACTCCCGAAACCTCGGTAAATGACTTACAATTCAATTTCCTACCGCATAA
TTCTAGTTGGAGGGCTCTCGGCAATGATCTTCAAGCAATGACTAGTGGCTATCGGCTCTCGGCTG
CCCCACCCTATGGCAATGAGACTGTCTATTGGCAACCACTGGCTATCAACTATGATCGACTACTT
GGCACAGATAATAGCTTAATGCACTGACTGTATAGAGCAGTGACCAGAGCTTCTAGGTGCACTGA
GTAGAGCTAGCACTGACCAGAGCATCCCACCAAGAGAGTATAGCA
Right flanking sequence: Indices 16913 -- 17412
GCTTTTTTCATGCACTGAGTGATAAGAGCTTATAGGCACTGACCGTATCCAGCCCGGTAGCTAAG
CCGATTAGCCAAGTCGAATAGCCAAGCATCCATCCCATTCGATTAGCCCAGTTGAGTATCCCAGT
CGATTAGCCAAGTCCGAGTATCAAAGGCAAGCAATGACCACCGGCTGACACTGGGTATTTGCAAT
GACACTATGGCACTGACTGGCAATGACTAGCTTCCATGACTAGAGCTTCCAGCAAGTACTCCCGC
TATTGGCTATCGACAAGTACCTTAAGGCGATGACCACACTGTAAATGATTGGCTATTGATACAAT
GACTAGCTGCACTGAGTAGAGGTTCAAGCAATTAGACTGGAAATGACAAGCTGAACTGACAAGAG
CCTCATTAATGCACCGACCAGAGGTTCATGCACTAACTAACTGAGTATAGTTTCGACGAGTAGAG
CTTCCTGAATAGAGTTTCATGCACTGAGTAGAGGTTCCCATGAGT
Found at i:17419 original size:35 final size:33
Alignment explanation
Indices: 17360--17424 Score: 94
Period size: 35 Copynumber: 1.9 Consensus size: 33
17350 TAGTTTCGAC
17360 GAGTAGAGCTTCCTGAATAGAGTTTCATGCACT
1 GAGTAGAGCTTCCTGAATAGAGTTTCATGCACT
* *
17393 GAGTAGAGGTTCCCATGAGTAGAGTTTCATGC
1 GAGTAGAGCTT-CC-TGAATAGAGTTTCATGC
17425 TGCAACCTTC
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 10 0.36
34 2 0.07
35 16 0.57
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.29
Consensus pattern (33 bp):
GAGTAGAGCTTCCTGAATAGAGTTTCATGCACT
Left flanking sequence: Indices 16860 -- 17359
GAGTAGAACTTCCCATAAGTAGGCCTTCATGAATAGAACTTCCCATGAGTAGAGCTTTTTTCATG
CACTGAGTGATAAGAGCTTATAGGCACTGACCGTATCCAGCCCGGTAGCTAAGCCGATTAGCCAA
GTCGAATAGCCAAGCATCCATCCCATTCGATTAGCCCAGTTGAGTATCCCAGTCGATTAGCCAAG
TCCGAGTATCAAAGGCAAGCAATGACCACCGGCTGACACTGGGTATTTGCAATGACACTATGGCA
CTGACTGGCAATGACTAGCTTCCATGACTAGAGCTTCCAGCAAGTACTCCCGCTATTGGCTATCG
ACAAGTACCTTAAGGCGATGACCACACTGTAAATGATTGGCTATTGATACAATGACTAGCTGCAC
TGAGTAGAGGTTCAAGCAATTAGACTGGAAATGACAAGCTGAACTGACAAGAGCCTCATTAATGC
ACCGACCAGAGGTTCATGCACTAACTAACTGAGTATAGTTTCGAC
Right flanking sequence: Indices 17425 -- 17924
TGCAACCTTCTAGCTCTGATTGACAACTGGCGATACTGGCACTCCTGGCATCGACTATGACTCTT
GTATCGACTCTTGTATCAACACCTGTCATCGAGTGCATCGACACCTACCTGGCTATGACCTCCTG
GCTGTCGTCGACCACTGGCTATCCTATCAGCGACTACCTGGCAATGAGACTGGCTATCGGTGAGC
ACTGGCTTTGTATGGCTTTGTGACCGGCGAGAATGGCTTTCTACTGGCTAGGTGGGGGAGTTGGC
TGGCTTGGTCTTGGGACTGCCTGGCTTTGTGCTTCAACTGGCTGGAGCTGACTGGCTGGTGGCTG
GCTTTCGAACTTTAGATGACTGGCTACAGGCTGTCTTTCTTGCTGGCAGTAGCTCGCTCAAGTAT
TGGAAGAATTTCCGCATTTACCAATTGTTTTTTTCCATCTTATTTCCGTATTAACCGAAAGCTTA
TTTCCGTATTAACCGAGCTTTACCGGTAGAAGTTTTTGGTGAATT
Found at i:18566 original size:23 final size:23
Alignment explanation
Indices: 18539--18589 Score: 59
Period size: 23 Copynumber: 2.2 Consensus size: 23
18529 CTTGATAAGC
*
18539 CAGAGCGA-ACAATGACTGAGTCA
1 CAGAGC-ATACAATGAATGAGTCA
**
18562 CAGAGCATATTATGAATGAGTCA
1 CAGAGCATACAATGAATGAGTCA
18585 CAGAG
1 CAGAG
18590 TACGAGTCAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
22 1 0.04
23 23 0.96
ACGTcount: A:0.39, C:0.18, G:0.25, T:0.18
Consensus pattern (23 bp):
CAGAGCATACAATGAATGAGTCA
Left flanking sequence: Indices 18039 -- 18538
CTTTGCTAGCGGATTCTCAGGGTGAAAAAGCAGGCTCGACCATAAGCCCACCACCCAATAAGCAT
CAAGGACCGGCAACGGGGCTCGACTGATAAGGACCCTTTAGGGGGCTCGACTGATAAGGAGAGGA
GAGGAACTTGAGTTGCTCGACTGTTTTTTTTTACTTATTGCCCCACCCAATAAGTAAACCCTAAC
CGGCAACGGGGCTCTCAATCTAAGGAGAGGAACTTGAGTTGCTCGACCAACCTAAGGAATGAAGG
CAGGGCTCTCAATTAAGGGAGAGGAATACTAACAGACTCGGGTGAAAAAGCTGGGGCTTTCAGGA
AGGACCCTAAGACAGACTCCGGTAAGGTAAGGCGGGTTCAGCTGAGCTATCTGGTGAGGCAGGCT
CAGGCAGACTCAGGTGAGGTAGACTCGGGTAAGGTAGGCTAGGTTGGAGACCGAGGTATATTCAG
GTGGGGACTGAAAGAACATATATTTTCTTACTTGACTTGATAAGC
Right flanking sequence: Indices 18590 -- 19089
TACGAGTCAAGGGTGGGATGGAAGTGATGATAGAACGCGCTAAAAGGGCAATTGAAACGGTTTTC
CGCTTTCATTTATGCTTCCTTGCCCTCAGCGGACAAGACCTCCGGACCTTGCTCAATCTTCACTT
TCTCTTCTTCGCACTCATAGGTTGGTCTTTATGACGTATAATCACTTTTGACGTGAACATCCTCT
CCTTATCAGTCGAGCCCCCTGTCGGGTCCTTGCTTTCCTAACGTCAAGCAAGCACTACGTTCCTT
GCACTAGGAAGCGCAAGCCCCTCCGGGACCTTCCCTTCTGAAAGCCGGCACCTCTTCTTTCTATT
GTGCCTTGACAAGTTGGGTCATTAGGTGAGGCAGGTTCAAGTGAGGTAGACTCAGGTGAGACAGG
TTCGGGTGGAGACCGAAGGAACAGAGATATATTCTTGTTGGCTGGTACTGATATAACCGCTTTTA
TTCAAGAGTGAGCCATAAGCGTAAAAGGAACAATCGCAGCTACCT
Found at i:19533 original size:16 final size:16
Alignment explanation
Indices: 19509--19540 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
19499 CGAGGTCAGT
19509 AAGGAGGGCGAGACCA
1 AAGGAGGGCGAGACCA
*
19525 AAGGTGGGCGAGACCA
1 AAGGAGGGCGAGACCA
19541 GGTTGGGACA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.34, C:0.19, G:0.44, T:0.03
Consensus pattern (16 bp):
AAGGAGGGCGAGACCA
Left flanking sequence: Indices 19009 -- 19508
TATTCTTGTTGGCTGGTACTGATATAACCGCTTTTATTCAAGAGTGAGCCATAAGCGTAAAAGGA
ACAATCGCAGCTACCTTCCTTCCCTCATGAGCACCCAATCACACCTACCCCCCCCTTTTTTTTCT
GTAAGATAAGGATCAACTGCACCTGCCTTCGTTAGCATAAGATAAGGACCCGTGGTACCCTCAAT
GGGGCTGGTTAACCGGGTCGGTCAGTCACCATAAGCCATCTTCAGATTAGTACTATCACATACAT
ATCTTCTTTCCTTTCTTATTGCATATATTCTTATTGGTGGTAGTTGTTCGTGATCAAGTCAAGTA
TACGTTGTTTATGATAAGAAAGCCTCGTGATAAGTAAGACAGCTTCGGTTCAGGTAAATCGGTAG
GTTGAGGACCATTACCGCCGACATCCTTCCTTTCTTTCTTATTGACCGAAGAGCGCATCCCCAGG
GTAGGCATTAAAAAGTAAGCTTGAACCGAGTATAGCGAGGTCAGT
Right flanking sequence: Indices 19541 -- 20040
GGTTGGGACATACATATTTGATTATTGATCGGCCTATGAAACATGTTCTTCCGGTGGGCACTTCA
AAGTGAGGAAGCTTGAAACACCGACCCAAGGAGGGCGAGGTCAGGAAAGAGGACGGAATCAAGGA
TAGGAATCCTAGGATAGGACGATCAAGGATAGGTTGATCAAGGATAGGGAACGGACGGCCACAAT
TTCTTAGTGGACGGCCCAGGCGAGGTCAGGGATGGGGTACGGGGAAGGGAAAGGAATAAGGGAAG
GGGAAAGGGAAAAGGGAGAAGTCTTGTTGTTGTTTACAGAGCACATTGGATACGCCTTCACTTGG
CCGCTCAAAAACGTGAAGAAAAGAATTAAGCTCAAGATTCAAACTACCGGTCTCGTGCCGTATCT
TTTTCATCCGCGCTGCAAAATACAATAACGTTGCTGCCAACCGTTGCCACTCGAGAGGGCTGCCT
GAGCTCGGCTCCTCCCATCGGAAAAAGAAATCACTTCCCCAGAAG
Found at i:19701 original size:15 final size:14
Alignment explanation
Indices: 19663--19718 Score: 60
Period size: 15 Copynumber: 3.9 Consensus size: 14
19653 AGAGGACGGA
19663 ATCAAGGATAGGA-
1 ATCAAGGATAGGAG
*
19676 ATCCTAGGATAGGACG
1 AT-CAAGGATAGGA-G
*
19692 ATCAAGGATAGGTTG
1 ATCAAGGATAGG-AG
19707 ATCAAGGATAGG
1 ATCAAGGATAGG
19719 GAACGGACGG
Statistics
Matches: 36, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
13 2 0.06
14 10 0.28
15 22 0.61
16 2 0.06
ACGTcount: A:0.38, C:0.11, G:0.32, T:0.20
Consensus pattern (14 bp):
ATCAAGGATAGGAG
Left flanking sequence: Indices 19163 -- 19662
GCCTTCGTTAGCATAAGATAAGGACCCGTGGTACCCTCAATGGGGCTGGTTAACCGGGTCGGTCA
GTCACCATAAGCCATCTTCAGATTAGTACTATCACATACATATCTTCTTTCCTTTCTTATTGCAT
ATATTCTTATTGGTGGTAGTTGTTCGTGATCAAGTCAAGTATACGTTGTTTATGATAAGAAAGCC
TCGTGATAAGTAAGACAGCTTCGGTTCAGGTAAATCGGTAGGTTGAGGACCATTACCGCCGACAT
CCTTCCTTTCTTTCTTATTGACCGAAGAGCGCATCCCCAGGGTAGGCATTAAAAAGTAAGCTTGA
ACCGAGTATAGCGAGGTCAGTAAGGAGGGCGAGACCAAAGGTGGGCGAGACCAGGTTGGGACATA
CATATTTGATTATTGATCGGCCTATGAAACATGTTCTTCCGGTGGGCACTTCAAAGTGAGGAAGC
TTGAAACACCGACCCAAGGAGGGCGAGGTCAGGAAAGAGGACGGA
Right flanking sequence: Indices 19719 -- 20218
GAACGGACGGCCACAATTTCTTAGTGGACGGCCCAGGCGAGGTCAGGGATGGGGTACGGGGAAGG
GAAAGGAATAAGGGAAGGGGAAAGGGAAAAGGGAGAAGTCTTGTTGTTGTTTACAGAGCACATTG
GATACGCCTTCACTTGGCCGCTCAAAAACGTGAAGAAAAGAATTAAGCTCAAGATTCAAACTACC
GGTCTCGTGCCGTATCTTTTTCATCCGCGCTGCAAAATACAATAACGTTGCTGCCAACCGTTGCC
ACTCGAGAGGGCTGCCTGAGCTCGGCTCCTCCCATCGGAAAAAGAAATCACTTCCCCAGAAGCGG
TTCCGATAGAAGGTAAGGGGAATCCGATCCTTATTCATTACCAGAATAAGCGGCACCGGAAGATG
ATCAATGAAGGGGACTAAAGAGAAGATATAGTAAGATAGCTAATTATTCAGTTCTTGGCAGAAGG
GTCAGTTGGAACTCTTCTATCGTAAGATGTGGGCAGGTGCGGCTT
Found at i:19806 original size:19 final size:18
Alignment explanation
Indices: 19777--19817 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 18
19767 ATGGGGTACG
19777 GGGAAGGGAAA-GGAATAA
1 GGGAAGGGAAAGGGAA-AA
19795 GGGAAGGGGAAAGGGAAAA
1 GGGAA-GGGAAAGGGAAAA
19814 GGGA
1 GGGA
19818 GAAGTCTTGT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 5 0.24
19 12 0.57
20 4 0.19
ACGTcount: A:0.46, C:0.00, G:0.51, T:0.02
Consensus pattern (18 bp):
GGGAAGGGAAAGGGAAAA
Left flanking sequence: Indices 19277 -- 19776
TCCTTTCTTATTGCATATATTCTTATTGGTGGTAGTTGTTCGTGATCAAGTCAAGTATACGTTGT
TTATGATAAGAAAGCCTCGTGATAAGTAAGACAGCTTCGGTTCAGGTAAATCGGTAGGTTGAGGA
CCATTACCGCCGACATCCTTCCTTTCTTTCTTATTGACCGAAGAGCGCATCCCCAGGGTAGGCAT
TAAAAAGTAAGCTTGAACCGAGTATAGCGAGGTCAGTAAGGAGGGCGAGACCAAAGGTGGGCGAG
ACCAGGTTGGGACATACATATTTGATTATTGATCGGCCTATGAAACATGTTCTTCCGGTGGGCAC
TTCAAAGTGAGGAAGCTTGAAACACCGACCCAAGGAGGGCGAGGTCAGGAAAGAGGACGGAATCA
AGGATAGGAATCCTAGGATAGGACGATCAAGGATAGGTTGATCAAGGATAGGGAACGGACGGCCA
CAATTTCTTAGTGGACGGCCCAGGCGAGGTCAGGGATGGGGTACG
Right flanking sequence: Indices 19818 -- 20317
GAAGTCTTGTTGTTGTTTACAGAGCACATTGGATACGCCTTCACTTGGCCGCTCAAAAACGTGAA
GAAAAGAATTAAGCTCAAGATTCAAACTACCGGTCTCGTGCCGTATCTTTTTCATCCGCGCTGCA
AAATACAATAACGTTGCTGCCAACCGTTGCCACTCGAGAGGGCTGCCTGAGCTCGGCTCCTCCCA
TCGGAAAAAGAAATCACTTCCCCAGAAGCGGTTCCGATAGAAGGTAAGGGGAATCCGATCCTTAT
TCATTACCAGAATAAGCGGCACCGGAAGATGATCAATGAAGGGGACTAAAGAGAAGATATAGTAA
GATAGCTAATTATTCAGTTCTTGGCAGAAGGGTCAGTTGGAACTCTTCTATCGTAAGATGTGGGC
AGGTGCGGCTTTAAGTGAATGTGGCCAGAAGGCGGATTGTGAATATAGGGAACGCCTCTATTGAC
AGATGGTTCATTTTATCAGGTTGCATTATATACGTTATAATACAC
Found at i:21169 original size:23 final size:25
Alignment explanation
Indices: 21115--21164 Score: 64
Period size: 27 Copynumber: 1.9 Consensus size: 25
21105 AACCATATGA
* *
21115 AATGCATAATGACATATATAATGAAT
1 AATGCATAATGACATAGAGAAT-AAT
21141 GAATGCATAATGACATAGAGAATA
1 -AATGCATAATGACATAGAGAATA
21165 TATGCTTTGG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 1 0.05
27 20 0.95
ACGTcount: A:0.50, C:0.08, G:0.16, T:0.26
Consensus pattern (25 bp):
AATGCATAATGACATAGAGAATAAT
Left flanking sequence: Indices 20615 -- 21114
GACCACTTCCTTCCTATTTGGCGACCGACCACTGGCTTACTTCGCGCACTGGCCCCTCTATCTTG
GCGATGATCTCCTATCATAAGAATATTTGTTAACTGGTTGATTCAATAACCGTGGGCAGAACGCC
AGAGCTAAAAAAAGAAAGAAGCGGGAGGACCGGAGGGGCTCGACCGTTAGCCCCCCCACCCAATA
AGTAAATTGAAACTTTAGTTGCTCTCAATCTAAGGTACGTGGGAGAGAAAGATGTTCAAACCTCC
GCCAAAGGACAAGTAGTTGAAGGGTTGGAACATGCATTCAAAGGTCATAGGTCAAGCAAGTAGTT
TCAGGGTACTCAAGTTGTATGGGGCTACTAGGTCTAGTTATTAAGGTGGGTAACTATGCAGGTGG
GTAGCAGGTCCTAAAAGGAAAGGCTCTAGATGAAGCCAGAGCCCAGCCAGAAGCCAGCAAGAGAA
GCCTTCACCCAGCCCCCCAGCCTTAAGCAGACCCGAACCATATGA
Right flanking sequence: Indices 21165 -- 21664
TATGCTTTGGCGGAGGTTTTCACAGCCTTCCCTCCTATTCTTGCCATTTGAGGAGGCGGAGGTTT
GATGCGTAATGACATATATCGAGTCATTCATGCATAATAACATATATAATGAGATTGATTTCGGT
CACTAGAGAGAGACGAAATCAAAGCACACTCGACTGTCAAGAACCTTTAGGTGCTCGACCATAAG
GACCTTTAGGTGCTCGACCTTAAGGGAGAGGGAGAGGATGCGCAAGCAGGCTCGACTGTTAAGGA
CCCTTTAGGGTGCGTAAGCACGCTCGACTAATAAGGAGAGGGGGGCTCGACTGATAAGGACCCTT
TAGGGGGGCTCGACTGATAAGGAGGGAGAGGACCTTTAGGTGCTCGACCATAGGACCTTAAGGGA
GAGGATGCGCAAGCAGGCTCGACTGTTAAGGACCTTTAGGTGCTCGACCCTAAGGGAGAGGAGAG
GAGAGGATGCGGAGCACGCTCGACCAGCGCCCCCCACCCAATAAG
Found at i:21366 original size:24 final size:24
Alignment explanation
Indices: 21337--21384 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
21327 ACTGTCAAGA
21337 ACCTTTAGGTGCTCGACCATAAGG
1 ACCTTTAGGTGCTCGACCATAAGG
*
21361 ACCTTTAGGTGCTCGACCTTAAGG
1 ACCTTTAGGTGCTCGACCATAAGG
21385 GAGAGGGAGA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.23, C:0.25, G:0.25, T:0.27
Consensus pattern (24 bp):
ACCTTTAGGTGCTCGACCATAAGG
Left flanking sequence: Indices 20837 -- 21336
ATCTAAGGTACGTGGGAGAGAAAGATGTTCAAACCTCCGCCAAAGGACAAGTAGTTGAAGGGTTG
GAACATGCATTCAAAGGTCATAGGTCAAGCAAGTAGTTTCAGGGTACTCAAGTTGTATGGGGCTA
CTAGGTCTAGTTATTAAGGTGGGTAACTATGCAGGTGGGTAGCAGGTCCTAAAAGGAAAGGCTCT
AGATGAAGCCAGAGCCCAGCCAGAAGCCAGCAAGAGAAGCCTTCACCCAGCCCCCCAGCCTTAAG
CAGACCCGAACCATATGAAATGCATAATGACATATATAATGAATGAATGCATAATGACATAGAGA
ATATATGCTTTGGCGGAGGTTTTCACAGCCTTCCCTCCTATTCTTGCCATTTGAGGAGGCGGAGG
TTTGATGCGTAATGACATATATCGAGTCATTCATGCATAATAACATATATAATGAGATTGATTTC
GGTCACTAGAGAGAGACGAAATCAAAGCACACTCGACTGTCAAGA
Right flanking sequence: Indices 21385 -- 21884
GAGAGGGAGAGGATGCGCAAGCAGGCTCGACTGTTAAGGACCCTTTAGGGTGCGTAAGCACGCTC
GACTAATAAGGAGAGGGGGGCTCGACTGATAAGGACCCTTTAGGGGGGCTCGACTGATAAGGAGG
GAGAGGACCTTTAGGTGCTCGACCATAGGACCTTAAGGGAGAGGATGCGCAAGCAGGCTCGACTG
TTAAGGACCTTTAGGTGCTCGACCCTAAGGGAGAGGAGAGGAGAGGATGCGGAGCACGCTCGACC
AGCGCCCCCCACCCAATAAGCATCAAGGGCCGGCAGGGCTCGACCAACGCTAGTTACTTATTTGA
GAGGGGCACAAAATAAGTCAATTGAAACTTTAGTTGCTCTCAATCTAGCCCACCACCCAATAAGC
ATCAAGGAAGCAGGCTCGACTGGCCGCCATCGTGCCCCCGGCAGGGTGAGGTACGAACGCTCGAC
TAATAAGGCCGCCATCGCTCGACCAACGGGAGAGGGAGAGGAGAG
Found at i:22250 original size:16 final size:16
Alignment explanation
Indices: 22229--22260 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
22219 CGCCTTGGTG
22229 GGGATAACCTAACTAA
1 GGGATAACCTAACTAA
*
22245 GGGATAACCTTACTAA
1 GGGATAACCTAACTAA
22261 CAGAATGGAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.41, C:0.19, G:0.19, T:0.22
Consensus pattern (16 bp):
GGGATAACCTAACTAA
Left flanking sequence: Indices 21729 -- 22228
AATTGAAACTTTAGTTGCTCTCAATCTAGCCCACCACCCAATAAGCATCAAGGAAGCAGGCTCGA
CTGGCCGCCATCGTGCCCCCGGCAGGGTGAGGTACGAACGCTCGACTAATAAGGCCGCCATCGCT
CGACCAACGGGAGAGGGAGAGGAGAGGATGCGAAGCATGGCTCGACCGCCGCCTTTTAGTTACTT
ATTTGAGAGCCCAATAAGTAAATTGAAACTGGAGAAGAATATCGTATACAAAGAGATATCTCATT
CATGCATAATGACCAGCAGTCACTTACTCATTGTCTTGGTCGGCATTCATTATATACGTAATTAC
GTCATTCGAGATAGGAACCAGATGTGCACCTCGGCGAGATAGCGTAATGACATATATAACTAACT
ACGCCGTATCTAGCAACCAAGCTACTTACGGAGGAGGCTTATAAACCGCGCTTCGCATCCTCTAT
TTATTTCCCTCAAATAGCTAGAAGGTAAGGTCCTTCGCCTTGGTG
Right flanking sequence: Indices 22261 -- 22760
CAGAATGGATTACTGGGACAACAGAATGGCAGTTCATAAGGCAAGCAAGCCACGGAAGCAAGGCA
GTGATAGAACGAAAGCAAGCGGGTTAGCGAGAAGGGAACAGGACAGGGCTAAAAAGAGAAGGCAC
CACCCACCTTTATTCTGCCTTCCTAAGTCCTTTAAGTGGGGGGCCGTTGTCAAGTGAGCCATTCT
TCCTCACCCTTCCCTTTCTAAGAAACTGTCACTTTGATAAGGTTTCCATTTCACACTTCGACCAA
TCTGCCAAACTGTTTTCTTTTCTATGACGTGGGTGACGCGAAAGAAGAAAGATTCTTCACGTTCG
AACTGAGGATGGAATAGATTCGGGAGAAATACTGTAGTCCCACCTGCCAGCGGATGATCTATCTC
TTGATACCTTCCACCTGTGAGACATCTCTATACCTACCTATTGGCAGTATCTTATATCCAACCTT
CTCTACAACTTCCTGCTTGAGAGATATCATCTTCTTGCTCCCTGC
Found at i:25099 original size:14 final size:14
Alignment explanation
Indices: 25080--25107 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
25070 TAGCTACGAT
25080 CTAATCTCTTTTGC
1 CTAATCTCTTTTGC
25094 CTAATCTCTTTTGC
1 CTAATCTCTTTTGC
25108 TTAACGAGAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.29, G:0.07, T:0.50
Consensus pattern (14 bp):
CTAATCTCTTTTGC
Left flanking sequence: Indices 24580 -- 25079
AAGTCTATTGGTGAAAACATGAAGTTTCGATGGCGGCCCTCACCCATATGATGGATGAGCGAGAA
ATCCCTCACCATATGAATAGTGAGTGACCCCTCTCCTCTCCTTATCAGTCGAGCCCCCTAAAGGG
TCCTTGACAGTCGAGCCCCTACCGGTCCTCACCATCGGAATAGTGAGTGGCTCCGCCCCTAAATA
ATATAGGGCCCTTTGGTCGAGCGTCTAAAGACCCTCATGTTTGCCAGTAATAAAAAGAATATATG
AGCTGTGCGCAATATACGTAATAATACGCTCCGCAGGACATCTGAGCTTAGGCGGTCTCCTCATG
TATGTTGCCCTGCCCTATGCCTATTCTCTGATCCCTAAGCGCTACGCTGCCCTAAGGTGATAAAT
AAGCTCAGACGATTTCTTATCTTATACGATGAGGAATAGCGTGATCTCAGCTTCCTAACTAACGA
TGTTTAACTAAGCCCGATATGCCTTCTTATACGATTAGCTACGAT
Right flanking sequence: Indices 25108 -- 25607
TTAACGAGAGATAGAGAATTGCTTAAGGAGAGAATATCTTTTGCTCTTGTTCTTTTCTTCTCTGA
GTCCGAGCCCAAGAGCTAAACCAATCCCATCCCTCTTGAAGCTATAATAAGACTCTGGGGAATGT
TGAACTTATAATAAGACTCTGGGGAATGTCCTTATCCCGAGAAGCCTCTTATCCCGTCCCGCATC
CCAATAACGACAAGTCAAAAAAAAAGGAGGTATAAGCTCTAGTTATTGTTATTCTCTGATCTTAG
AAGGAAGGAAGGGCGATTATGAATTCTATCTGGCCCACGTATCTCTGATTGGGATTACCCTCTCC
TCTCTCGCCCACCAACTCTGCCCACGCCCACTCATCTCTGATCTTTCATCAATTCTCAGGGTGGA
AAACCATGAATTGAAGCGTGATTTAGGTGGTCTCCGAAGGGTCCGACAATACCATAATTACATAT
CAAATATATGCATTGTCTGCTCTGCTATTGAGGGGAAGAAATATG
Found at i:26697 original size:12 final size:12
Alignment explanation
Indices: 26680--26710 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
26670 GAGTTGATAA
26680 ATGAGGAGCTGG
1 ATGAGGAGCTGG
*
26692 ATGAGGAGTTGG
1 ATGAGGAGCTGG
26704 ATGAGGA
1 ATGAGGA
26711 AGGAGCTCGA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.29, C:0.03, G:0.48, T:0.19
Consensus pattern (12 bp):
ATGAGGAGCTGG
Left flanking sequence: Indices 26180 -- 26679
GCACGCTAACTCATCCTTTGTAAGGCACTTGATTCTGACCAATTCAAAGTAGTTGGGGGCCGTGA
GTCTCATTTCGGTAACTAGAGCCAGGGATTGCTTTTTCTAATTTGCTGGATAGATCGATGTTTCG
AGTGGCTGGGGGCGAGGCGCGGTGCACGGAATGAACCCATACCCATACGGACGGGGTGGACGCCG
CGGGATGTCATGCTTTTATTTATACTTCAATGCTTATATATGTTGCACCCAGTATATGTGCGCTT
TATTTTGATTGATAGATCTCGAATCGATTCTAGTTGATTCTGTCTCTTGATTGCTAGATACACAC
CCGTTTTACTACGCACTGCCCCCTTAGTTCACAAGCTCTTGAACGGGGGACCCAAAAAACTCCCT
AACTTGGCGGGGAAAACCCCTGGCCAACACTACCCAGGCTTGACAATTTATGCGCCCTTGCAGGG
CAAGCGAGCAGGGTGGGGCACTGATTTATTTGATCGAGTTGATAA
Right flanking sequence: Indices 26711 -- 27210
AGGAGCTCGATTAGGATTCCCCAAAAAGCCACAAACACACAAGCAGGGAGCGGTGAAACGAACCA
TTCAACTTTCACCTTTAGCCTTAAGCCATGAACCATGAACCAGAAGCCACGAGTCATGAACCAAA
AGCCCTTAACCTCGGAACCTTTAGACGAGTCCAACAGAACAGAGAGAAGAAGCTATTCAATGGCC
GAGAGGATAACTTATCCATCATCGCTAGAGAGGATAACTTACCCATACCCTCGGAAAGGAGCGAG
GTTAACGACGGTACGGCACACGATACGGTACGGGGACGAATGATCCTGTTAGTGAGTAATAGTGA
TTTAACATAAAGAATGAGTTCATACAGCTCGTTATATATGATGCACCTGTTGAGGATCATACTTA
TTCAGAGCCCAGAAGTAACAGTCAGTGTCAGGAGGTCATCGCCGATAGAATAAGAAACCCCCATA
TCACATACCCGAGTCACCTTCAACACATGAGACATCCACTCAACA
Found at i:26824 original size:21 final size:21
Alignment explanation
Indices: 26798--26844 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
26788 CTTTAGCCTT
* *
26798 AAGCCATGAACCATGAACCAG
1 AAGCCACGAACCATGAACCAA
**
26819 AAGCCACGAGTCATGAACCAA
1 AAGCCACGAACCATGAACCAA
26840 AAGCC
1 AAGCC
26845 CTTAACCTCG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.43, C:0.30, G:0.19, T:0.09
Consensus pattern (21 bp):
AAGCCACGAACCATGAACCAA
Left flanking sequence: Indices 26298 -- 26797
ATCGATGTTTCGAGTGGCTGGGGGCGAGGCGCGGTGCACGGAATGAACCCATACCCATACGGACG
GGGTGGACGCCGCGGGATGTCATGCTTTTATTTATACTTCAATGCTTATATATGTTGCACCCAGT
ATATGTGCGCTTTATTTTGATTGATAGATCTCGAATCGATTCTAGTTGATTCTGTCTCTTGATTG
CTAGATACACACCCGTTTTACTACGCACTGCCCCCTTAGTTCACAAGCTCTTGAACGGGGGACCC
AAAAAACTCCCTAACTTGGCGGGGAAAACCCCTGGCCAACACTACCCAGGCTTGACAATTTATGC
GCCCTTGCAGGGCAAGCGAGCAGGGTGGGGCACTGATTTATTTGATCGAGTTGATAAATGAGGAG
CTGGATGAGGAGTTGGATGAGGAAGGAGCTCGATTAGGATTCCCCAAAAAGCCACAAACACACAA
GCAGGGAGCGGTGAAACGAACCATTCAACTTTCACCTTTAGCCTT
Right flanking sequence: Indices 26845 -- 27344
CTTAACCTCGGAACCTTTAGACGAGTCCAACAGAACAGAGAGAAGAAGCTATTCAATGGCCGAGA
GGATAACTTATCCATCATCGCTAGAGAGGATAACTTACCCATACCCTCGGAAAGGAGCGAGGTTA
ACGACGGTACGGCACACGATACGGTACGGGGACGAATGATCCTGTTAGTGAGTAATAGTGATTTA
ACATAAAGAATGAGTTCATACAGCTCGTTATATATGATGCACCTGTTGAGGATCATACTTATTCA
GAGCCCAGAAGTAACAGTCAGTGTCAGGAGGTCATCGCCGATAGAATAAGAAACCCCCATATCAC
ATACCCGAGTCACCTTCAACACATGAGACATCCACTCAACATGGTATGAGTCAGTGAGTTAGGGT
CATTCCCAATAGCCCAAAGCCAGCTCTACGTGACCAGGAAAGAGTTGTACGTGACCACCAGTTGG
AGATCCCCCGTTACCAGTTAGTTGTACGTGACCAGTATACCACGT
Found at i:28797 original size:15 final size:16
Alignment explanation
Indices: 28777--28808 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
28767 GCTTATTTGC
28777 CACGTACTCCTA-ATG
1 CACGTACTCCTACATG
28792 CACGTACTCCTACATG
1 CACGTACTCCTACATG
28808 C
1 C
28809 TGGAAGGTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 12 0.75
16 4 0.25
ACGTcount: A:0.25, C:0.38, G:0.12, T:0.25
Consensus pattern (16 bp):
CACGTACTCCTACATG
Left flanking sequence: Indices 28277 -- 28776
ACTCACTATTGGCCTAACTCACCTCACTAAGCGGCTCTACAACGGGAATGGTGCTTACCCATAAA
GGACACCTCAAATGGGTGGGTGCTAGATCATACCCTCTTGAACAGGCAGGACTCATGCTGGTTGG
TCACCTCTATGAAATCTACCTCCATAGTGCTCCTCCTATAGGGATGCCACTTACTAACCACATGG
ACTCTCTCTCATGCATGCATGCTGGTAACAACGCCCAAGGGGATATACCACGCACGGGCTCATGC
TGGACGTTACCGAACTCATACCTCTCACGAACTGCCTGCTGGGCACGTGGTAACCTGTATTTGAA
CTAAGGAGGATATTCTATTATCCCGATGACAAGGACCCAAGTGGATTATTAGACTAGTATTGGCT
TACCAGCTAGCAACTAATAAACCCTCCTGGGTGGTACTGACCTATCCGCACCTCTTATTAAGGAC
TCATGCTGGCTGGCTGGATGTAACGCGCCCAACCGGCTTATTTGC
Right flanking sequence: Indices 28809 -- 29308
TGGAAGGTTACTTGATATCCCACGGGCCCATGCTGCAAGTTTGAAATATGCATATCCCCCATGAG
AGTGTCAATGGATCTCCCCCCACGGGCTGATGAAGCTGTCAGTTCAAATCCCTCCTGCTAGTGGA
ACCTCCTCATAGTGATGTGGAACCTCCTCATAGTGATGTGGAACCTCCTCATAGTGATGGTTGTG
GGTGGTATACCCAGACCTAGCTAAGCGGCTGCATGGCTAATTGAAGGATTGGTCTTACCCGCCGC
GCTGCAGATATGGTGATTGGGCTTAGGAATGGTTATCGGGTGAAGGGCAAGGAATGGTTATCGCT
GAAGATAAGGAAGCGTAGAAGCATGGAAGCGTAGAAGCGTAGAAGCATGGACAGACTCGCTTATT
CCCCGTTATCTGTATCCTTCCCTGTCCTTTTGGTGGGGGGGGTTAGATTGAGAGCCTGCTTACGC
CTCCTCTCCTTAGATTGAGAGCAACTAAAGTTCCTCTCCTTATCA
Found at i:28988 original size:24 final size:21
Alignment explanation
Indices: 28934--28997 Score: 128
Period size: 21 Copynumber: 3.0 Consensus size: 21
28924 CCTCCTGCTA
28934 GTGGAACCTCCTCATAGTGAT
1 GTGGAACCTCCTCATAGTGAT
28955 GTGGAACCTCCTCATAGTGAT
1 GTGGAACCTCCTCATAGTGAT
28976 GTGGAACCTCCTCATAGTGAT
1 GTGGAACCTCCTCATAGTGAT
28997 G
1 G
28998 GTTGTGGGTG
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 43 1.00
ACGTcount: A:0.23, C:0.23, G:0.25, T:0.28
Consensus pattern (21 bp):
GTGGAACCTCCTCATAGTGAT
Left flanking sequence: Indices 28434 -- 28933
TGCTCCTCCTATAGGGATGCCACTTACTAACCACATGGACTCTCTCTCATGCATGCATGCTGGTA
ACAACGCCCAAGGGGATATACCACGCACGGGCTCATGCTGGACGTTACCGAACTCATACCTCTCA
CGAACTGCCTGCTGGGCACGTGGTAACCTGTATTTGAACTAAGGAGGATATTCTATTATCCCGAT
GACAAGGACCCAAGTGGATTATTAGACTAGTATTGGCTTACCAGCTAGCAACTAATAAACCCTCC
TGGGTGGTACTGACCTATCCGCACCTCTTATTAAGGACTCATGCTGGCTGGCTGGATGTAACGCG
CCCAACCGGCTTATTTGCCACGTACTCCTAATGCACGTACTCCTACATGCTGGAAGGTTACTTGA
TATCCCACGGGCCCATGCTGCAAGTTTGAAATATGCATATCCCCCATGAGAGTGTCAATGGATCT
CCCCCCACGGGCTGATGAAGCTGTCAGTTCAAATCCCTCCTGCTA
Right flanking sequence: Indices 28998 -- 29497
GTTGTGGGTGGTATACCCAGACCTAGCTAAGCGGCTGCATGGCTAATTGAAGGATTGGTCTTACC
CGCCGCGCTGCAGATATGGTGATTGGGCTTAGGAATGGTTATCGGGTGAAGGGCAAGGAATGGTT
ATCGCTGAAGATAAGGAAGCGTAGAAGCATGGAAGCGTAGAAGCGTAGAAGCATGGACAGACTCG
CTTATTCCCCGTTATCTGTATCCTTCCCTGTCCTTTTGGTGGGGGGGGTTAGATTGAGAGCCTGC
TTACGCCTCCTCTCCTTAGATTGAGAGCAACTAAAGTTCCTCTCCTTATCAGTCGAGCCTGCTTG
TGCATCCTCTCCTCTCCCTCTCCCTCTCCCTTAAGGTCGAGCACCTAAAGGTTAGGGTTTACTTA
TTGGTTTGGGGGGTTTCACAGTCGAGCCTGCTTACGCATCCTTATGGTCGAGCACCTAAAGGTTA
GGGTTTACTTATTGGGTTGGGGGCTAAAGGTTAGGGTTTACTTAT
Found at i:29178 original size:16 final size:16
Alignment explanation
Indices: 29143--29179 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
29133 TGAAGATAAG
*
29143 GAAGCGTAGAAGCATG
1 GAAGCGTAGAAGCATA
*
29159 GAAGCGTAGAAGCGTA
1 GAAGCGTAGAAGCATA
29175 GAAGC
1 GAAGC
29180 ATGGACAGAC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.38, C:0.14, G:0.38, T:0.11
Consensus pattern (16 bp):
GAAGCGTAGAAGCATA
Left flanking sequence: Indices 28643 -- 29142
TGGATTATTAGACTAGTATTGGCTTACCAGCTAGCAACTAATAAACCCTCCTGGGTGGTACTGAC
CTATCCGCACCTCTTATTAAGGACTCATGCTGGCTGGCTGGATGTAACGCGCCCAACCGGCTTAT
TTGCCACGTACTCCTAATGCACGTACTCCTACATGCTGGAAGGTTACTTGATATCCCACGGGCCC
ATGCTGCAAGTTTGAAATATGCATATCCCCCATGAGAGTGTCAATGGATCTCCCCCCACGGGCTG
ATGAAGCTGTCAGTTCAAATCCCTCCTGCTAGTGGAACCTCCTCATAGTGATGTGGAACCTCCTC
ATAGTGATGTGGAACCTCCTCATAGTGATGGTTGTGGGTGGTATACCCAGACCTAGCTAAGCGGC
TGCATGGCTAATTGAAGGATTGGTCTTACCCGCCGCGCTGCAGATATGGTGATTGGGCTTAGGAA
TGGTTATCGGGTGAAGGGCAAGGAATGGTTATCGCTGAAGATAAG
Right flanking sequence: Indices 29180 -- 29679
ATGGACAGACTCGCTTATTCCCCGTTATCTGTATCCTTCCCTGTCCTTTTGGTGGGGGGGGTTAG
ATTGAGAGCCTGCTTACGCCTCCTCTCCTTAGATTGAGAGCAACTAAAGTTCCTCTCCTTATCAG
TCGAGCCTGCTTGTGCATCCTCTCCTCTCCCTCTCCCTCTCCCTTAAGGTCGAGCACCTAAAGGT
TAGGGTTTACTTATTGGTTTGGGGGGTTTCACAGTCGAGCCTGCTTACGCATCCTTATGGTCGAG
CACCTAAAGGTTAGGGTTTACTTATTGGGTTGGGGGCTAAAGGTTAGGGTTTACTTATTGGTTTG
GGGGGTTTCACAGTCGAGCCTGCTTACGCATCCTTATGGTCGAGCACCTAAAGGTTAGGGTTTAC
TTATTGGTTTGGGGGGTTTCACAGTCGAGCCTGCTTACGCATCCTTATGGTCGAGCACCTAAAGG
TTAGGGTTTACTTATTGGGTTGGGGGGTTTCACAGTCGAGCCTGC
Found at i:29480 original size:33 final size:33
Alignment explanation
Indices: 29443--29508 Score: 123
Period size: 33 Copynumber: 2.0 Consensus size: 33
29433 GGTCGAGCAC
29443 CTAAAGGTTAGGGTTTACTTATTGGGTTGGGGG
1 CTAAAGGTTAGGGTTTACTTATTGGGTTGGGGG
*
29476 CTAAAGGTTAGGGTTTACTTATTGGTTTGGGGG
1 CTAAAGGTTAGGGTTTACTTATTGGGTTGGGGG
29509 GTTTCACAGT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.18, C:0.06, G:0.38, T:0.38
Consensus pattern (33 bp):
CTAAAGGTTAGGGTTTACTTATTGGGTTGGGGG
Left flanking sequence: Indices 28943 -- 29442
CCTCATAGTGATGTGGAACCTCCTCATAGTGATGTGGAACCTCCTCATAGTGATGGTTGTGGGTG
GTATACCCAGACCTAGCTAAGCGGCTGCATGGCTAATTGAAGGATTGGTCTTACCCGCCGCGCTG
CAGATATGGTGATTGGGCTTAGGAATGGTTATCGGGTGAAGGGCAAGGAATGGTTATCGCTGAAG
ATAAGGAAGCGTAGAAGCATGGAAGCGTAGAAGCGTAGAAGCATGGACAGACTCGCTTATTCCCC
GTTATCTGTATCCTTCCCTGTCCTTTTGGTGGGGGGGGTTAGATTGAGAGCCTGCTTACGCCTCC
TCTCCTTAGATTGAGAGCAACTAAAGTTCCTCTCCTTATCAGTCGAGCCTGCTTGTGCATCCTCT
CCTCTCCCTCTCCCTCTCCCTTAAGGTCGAGCACCTAAAGGTTAGGGTTTACTTATTGGTTTGGG
GGGTTTCACAGTCGAGCCTGCTTACGCATCCTTATGGTCGAGCAC
Right flanking sequence: Indices 29509 -- 30008
GTTTCACAGTCGAGCCTGCTTACGCATCCTTATGGTCGAGCACCTAAAGGTTAGGGTTTACTTAT
TGGTTTGGGGGGTTTCACAGTCGAGCCTGCTTACGCATCCTTATGGTCGAGCACCTAAAGGTTAG
GGTTTACTTATTGGGTTGGGGGGTTTCACAGTCGAGCCTGCTTACGCATCCTTATGGTCGAGCAC
CTAAAGGTTAGGGTTTACTTATTGGTTTGGGGGGTTAACAGTCGAGCCTGCTTGCGCATCCTTAA
CAGTCGAGCCCCTCCGGTCCTCTCCTTAGATTGAGAGCCTGCTTGTGCATCCTCTCCTTAACAGT
CGAGCACCTCCGGTCCTCTCCTTATCAGTCGAGCCTGCTTGTGCATCCTCAAATGGCAAGAATAG
GCCCGGTAGGGACTCACTATTCATATGGTGAGGAGAGAAATATGTTCAAACCTCCGCCATCTTAT
CGGTCAATAATGACATATATAATAGATCTTTTTTTCTGATGATAT
Found at i:29558 original size:109 final size:109
Alignment explanation
Indices: 29367--29584 Score: 427
Period size: 109 Copynumber: 2.0 Consensus size: 109
29357 GGTCGAGCAC
29367 CTAAAGGTTAGGGTTTACTTATTGGTTTGGGGGGTTTCACAGTCGAGCCTGCTTACGCATCCTTA
1 CTAAAGGTTAGGGTTTACTTATTGGTTTGGGGGGTTTCACAGTCGAGCCTGCTTACGCATCCTTA
29432 TGGTCGAGCACCTAAAGGTTAGGGTTTACTTATTGGGTTGGGGG
66 TGGTCGAGCACCTAAAGGTTAGGGTTTACTTATTGGGTTGGGGG
29476 CTAAAGGTTAGGGTTTACTTATTGGTTTGGGGGGTTTCACAGTCGAGCCTGCTTACGCATCCTTA
1 CTAAAGGTTAGGGTTTACTTATTGGTTTGGGGGGTTTCACAGTCGAGCCTGCTTACGCATCCTTA
*
29541 TGGTCGAGCACCTAAAGGTTAGGGTTTACTTATTGGTTTGGGGG
66 TGGTCGAGCACCTAAAGGTTAGGGTTTACTTATTGGGTTGGGGG
29585 GTTTCACAGT
Statistics
Matches: 108, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
109 108 1.00
ACGTcount: A:0.18, C:0.16, G:0.32, T:0.34
Consensus pattern (109 bp):
CTAAAGGTTAGGGTTTACTTATTGGTTTGGGGGGTTTCACAGTCGAGCCTGCTTACGCATCCTTA
TGGTCGAGCACCTAAAGGTTAGGGTTTACTTATTGGGTTGGGGG
Left flanking sequence: Indices 28867 -- 29366
CCATGAGAGTGTCAATGGATCTCCCCCCACGGGCTGATGAAGCTGTCAGTTCAAATCCCTCCTGC
TAGTGGAACCTCCTCATAGTGATGTGGAACCTCCTCATAGTGATGTGGAACCTCCTCATAGTGAT
GGTTGTGGGTGGTATACCCAGACCTAGCTAAGCGGCTGCATGGCTAATTGAAGGATTGGTCTTAC
CCGCCGCGCTGCAGATATGGTGATTGGGCTTAGGAATGGTTATCGGGTGAAGGGCAAGGAATGGT
TATCGCTGAAGATAAGGAAGCGTAGAAGCATGGAAGCGTAGAAGCGTAGAAGCATGGACAGACTC
GCTTATTCCCCGTTATCTGTATCCTTCCCTGTCCTTTTGGTGGGGGGGGTTAGATTGAGAGCCTG
CTTACGCCTCCTCTCCTTAGATTGAGAGCAACTAAAGTTCCTCTCCTTATCAGTCGAGCCTGCTT
GTGCATCCTCTCCTCTCCCTCTCCCTCTCCCTTAAGGTCGAGCAC
Right flanking sequence: Indices 29585 -- 30084
GTTTCACAGTCGAGCCTGCTTACGCATCCTTATGGTCGAGCACCTAAAGGTTAGGGTTTACTTAT
TGGGTTGGGGGGTTTCACAGTCGAGCCTGCTTACGCATCCTTATGGTCGAGCACCTAAAGGTTAG
GGTTTACTTATTGGTTTGGGGGGTTAACAGTCGAGCCTGCTTGCGCATCCTTAACAGTCGAGCCC
CTCCGGTCCTCTCCTTAGATTGAGAGCCTGCTTGTGCATCCTCTCCTTAACAGTCGAGCACCTCC
GGTCCTCTCCTTATCAGTCGAGCCTGCTTGTGCATCCTCAAATGGCAAGAATAGGCCCGGTAGGG
ACTCACTATTCATATGGTGAGGAGAGAAATATGTTCAAACCTCCGCCATCTTATCGGTCAATAAT
GACATATATAATAGATCTTTTTTTCTGATGATATTATATACGCTACATGGCATAAGGCCTTTCAA
TCTCTCTCTGATTCCTAGCTACGACCCATGAAGAGATTCATTCTC
Found at i:29777 original size:76 final size:76
Alignment explanation
Indices: 29476--29767 Score: 550
Period size: 76 Copynumber: 3.9 Consensus size: 76
29466 GGGTTGGGGG
29476 CTAAAGGTTAGGGTTTACTTATTGGTTTGGGGGGTTTCACAGTCGAGCCTGCTTACGCATCCTTA
1 CTAAAGGTTAGGGTTTACTTATTGGTTTGGGGGGTTTCACAGTCGAGCCTGCTTACGCATCCTTA
29541 TGGTCGAGCAC
66 TGGTCGAGCAC
29552 CTAAAGGTTAGGGTTTACTTATTGGTTTGGGGGGTTTCACAGTCGAGCCTGCTTACGCATCCTTA
1 CTAAAGGTTAGGGTTTACTTATTGGTTTGGGGGGTTTCACAGTCGAGCCTGCTTACGCATCCTTA
29617 TGGTCGAGCAC
66 TGGTCGAGCAC
*
29628 CTAAAGGTTAGGGTTTACTTATTGGGTTGGGGGGTTTCACAGTCGAGCCTGCTTACGCATCCTTA
1 CTAAAGGTTAGGGTTTACTTATTGGTTTGGGGGGTTTCACAGTCGAGCCTGCTTACGCATCCTTA
29693 TGGTCGAGCAC
66 TGGTCGAGCAC
* *
29704 CTAAAGGTTAGGGTTTACTTATTGGTTTGGGGGG-TTAACAGTCGAGCCTGCTTGCGCATCCTTA
1 CTAAAGGTTAGGGTTTACTTATTGGTTTGGGGGGTTTCACAGTCGAGCCTGCTTACGCATCCTTA
29768 ACAGTCGAGC
Statistics
Matches: 212, Mismatches: 4, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
75 28 0.13
76 184 0.87
ACGTcount: A:0.18, C:0.19, G:0.29, T:0.33
Consensus pattern (76 bp):
CTAAAGGTTAGGGTTTACTTATTGGTTTGGGGGGTTTCACAGTCGAGCCTGCTTACGCATCCTTA
TGGTCGAGCAC
Left flanking sequence: Indices 28976 -- 29475
GTGGAACCTCCTCATAGTGATGGTTGTGGGTGGTATACCCAGACCTAGCTAAGCGGCTGCATGGC
TAATTGAAGGATTGGTCTTACCCGCCGCGCTGCAGATATGGTGATTGGGCTTAGGAATGGTTATC
GGGTGAAGGGCAAGGAATGGTTATCGCTGAAGATAAGGAAGCGTAGAAGCATGGAAGCGTAGAAG
CGTAGAAGCATGGACAGACTCGCTTATTCCCCGTTATCTGTATCCTTCCCTGTCCTTTTGGTGGG
GGGGGTTAGATTGAGAGCCTGCTTACGCCTCCTCTCCTTAGATTGAGAGCAACTAAAGTTCCTCT
CCTTATCAGTCGAGCCTGCTTGTGCATCCTCTCCTCTCCCTCTCCCTCTCCCTTAAGGTCGAGCA
CCTAAAGGTTAGGGTTTACTTATTGGTTTGGGGGGTTTCACAGTCGAGCCTGCTTACGCATCCTT
ATGGTCGAGCACCTAAAGGTTAGGGTTTACTTATTGGGTTGGGGG
Right flanking sequence: Indices 29768 -- 30267
ACAGTCGAGCCCCTCCGGTCCTCTCCTTAGATTGAGAGCCTGCTTGTGCATCCTCTCCTTAACAG
TCGAGCACCTCCGGTCCTCTCCTTATCAGTCGAGCCTGCTTGTGCATCCTCAAATGGCAAGAATA
GGCCCGGTAGGGACTCACTATTCATATGGTGAGGAGAGAAATATGTTCAAACCTCCGCCATCTTA
TCGGTCAATAATGACATATATAATAGATCTTTTTTTCTGATGATATTATATACGCTACATGGCAT
AAGGCCTTTCAATCTCTCTCTGATTCCTAGCTACGACCCATGAAGAGATTCATTCTCACTAGCAG
CTTACGACCTTATATGACTAGCTTACGCCCTTACCTGGCTAACTAATCTGACTTACTCACTACGA
GACTAATTCATGAGTGGGATAGATAGGCTTCCCAACCTTTTCTTAGCTTAATGAGAGGTAGTATT
CCAGGCTTCTTAGCTGAATGAGATAGGATCAATTATAGGATCAAG
Found at i:29844 original size:61 final size:61
Alignment explanation
Indices: 29762--29883 Score: 192
Period size: 61 Copynumber: 2.0 Consensus size: 61
29752 TGCTTGCGCA
* * *
29762 TCCTTAACAGTCGAGCCCCTCCGGTCCTCTCCTTA-GATTGAGAGCCTGCTTGTGCATCCTC
1 TCCTTAACAGTCGAGCACCTCCGGTCCTCTCCTTATCAGT-AGAGCCTGCTTGTGCATCCTC
*
29823 TCCTTAACAGTCGAGCACCTCCGGTCCTCTCCTTATCAGTCGAGCCTGCTTGTGCATCCTC
1 TCCTTAACAGTCGAGCACCTCCGGTCCTCTCCTTATCAGTAGAGCCTGCTTGTGCATCCTC
29884 AAATGGCAAG
Statistics
Matches: 56, Mismatches: 4, Indels: 2
0.90 0.06 0.03
Matches are distributed among these distances:
61 54 0.96
62 2 0.04
ACGTcount: A:0.15, C:0.37, G:0.19, T:0.30
Consensus pattern (61 bp):
TCCTTAACAGTCGAGCACCTCCGGTCCTCTCCTTATCAGTAGAGCCTGCTTGTGCATCCTC
Left flanking sequence: Indices 29262 -- 29761
GCCTCCTCTCCTTAGATTGAGAGCAACTAAAGTTCCTCTCCTTATCAGTCGAGCCTGCTTGTGCA
TCCTCTCCTCTCCCTCTCCCTCTCCCTTAAGGTCGAGCACCTAAAGGTTAGGGTTTACTTATTGG
TTTGGGGGGTTTCACAGTCGAGCCTGCTTACGCATCCTTATGGTCGAGCACCTAAAGGTTAGGGT
TTACTTATTGGGTTGGGGGCTAAAGGTTAGGGTTTACTTATTGGTTTGGGGGGTTTCACAGTCGA
GCCTGCTTACGCATCCTTATGGTCGAGCACCTAAAGGTTAGGGTTTACTTATTGGTTTGGGGGGT
TTCACAGTCGAGCCTGCTTACGCATCCTTATGGTCGAGCACCTAAAGGTTAGGGTTTACTTATTG
GGTTGGGGGGTTTCACAGTCGAGCCTGCTTACGCATCCTTATGGTCGAGCACCTAAAGGTTAGGG
TTTACTTATTGGTTTGGGGGGTTAACAGTCGAGCCTGCTTGCGCA
Right flanking sequence: Indices 29884 -- 30383
AAATGGCAAGAATAGGCCCGGTAGGGACTCACTATTCATATGGTGAGGAGAGAAATATGTTCAAA
CCTCCGCCATCTTATCGGTCAATAATGACATATATAATAGATCTTTTTTTCTGATGATATTATAT
ACGCTACATGGCATAAGGCCTTTCAATCTCTCTCTGATTCCTAGCTACGACCCATGAAGAGATTC
ATTCTCACTAGCAGCTTACGACCTTATATGACTAGCTTACGCCCTTACCTGGCTAACTAATCTGA
CTTACTCACTACGAGACTAATTCATGAGTGGGATAGATAGGCTTCCCAACCTTTTCTTAGCTTAA
TGAGAGGTAGTATTCCAGGCTTCTTAGCTGAATGAGATAGGATCAATTATAGGATCAAGCTTCTC
CTTACAACCTTCTGAGCTTCCCTTAATTAGTAGCTTAATTAGGTGAGGTAAAGCTTCTACTACCC
TATCTAGCTTCTGATTAGGGTTGAACCTCCCAGCAGCGCGCCCGC
Found at i:29857 original size:29 final size:29
Alignment explanation
Indices: 29762--29867 Score: 92
Period size: 29 Copynumber: 3.6 Consensus size: 29
29752 TGCTTGCGCA
*
29762 TCCTTAACAGTCGAGCCCCTCCGGTCCTC
1 TCCTTAACAGTCGAGCACCTCCGGTCCTC
* * *
29791 TCCTT-AGA-TTGAG-AGCCTGCTTGTGCATCCTC
1 TCCTTAACAGTCGAGCA-CCT-C-CG-G--TCCTC
29823 TCCTTAACAGTCGAGCACCTCCGGTCCTC
1 TCCTTAACAGTCGAGCACCTCCGGTCCTC
*
29852 TCCTTATCAGTCGAGC
1 TCCTTAACAGTCGAGC
29868 CTGCTTGTGC
Statistics
Matches: 60, Mismatches: 8, Indels: 18
0.70 0.09 0.21
Matches are distributed among these distances:
27 7 0.12
28 3 0.05
29 26 0.43
30 1 0.02
31 1 0.02
32 11 0.18
33 3 0.05
34 7 0.12
35 1 0.02
ACGTcount: A:0.16, C:0.37, G:0.19, T:0.28
Consensus pattern (29 bp):
TCCTTAACAGTCGAGCACCTCCGGTCCTC
Left flanking sequence: Indices 29262 -- 29761
GCCTCCTCTCCTTAGATTGAGAGCAACTAAAGTTCCTCTCCTTATCAGTCGAGCCTGCTTGTGCA
TCCTCTCCTCTCCCTCTCCCTCTCCCTTAAGGTCGAGCACCTAAAGGTTAGGGTTTACTTATTGG
TTTGGGGGGTTTCACAGTCGAGCCTGCTTACGCATCCTTATGGTCGAGCACCTAAAGGTTAGGGT
TTACTTATTGGGTTGGGGGCTAAAGGTTAGGGTTTACTTATTGGTTTGGGGGGTTTCACAGTCGA
GCCTGCTTACGCATCCTTATGGTCGAGCACCTAAAGGTTAGGGTTTACTTATTGGTTTGGGGGGT
TTCACAGTCGAGCCTGCTTACGCATCCTTATGGTCGAGCACCTAAAGGTTAGGGTTTACTTATTG
GGTTGGGGGGTTTCACAGTCGAGCCTGCTTACGCATCCTTATGGTCGAGCACCTAAAGGTTAGGG
TTTACTTATTGGTTTGGGGGGTTAACAGTCGAGCCTGCTTGCGCA
Right flanking sequence: Indices 29868 -- 30367
CTGCTTGTGCATCCTCAAATGGCAAGAATAGGCCCGGTAGGGACTCACTATTCATATGGTGAGGA
GAGAAATATGTTCAAACCTCCGCCATCTTATCGGTCAATAATGACATATATAATAGATCTTTTTT
TCTGATGATATTATATACGCTACATGGCATAAGGCCTTTCAATCTCTCTCTGATTCCTAGCTACG
ACCCATGAAGAGATTCATTCTCACTAGCAGCTTACGACCTTATATGACTAGCTTACGCCCTTACC
TGGCTAACTAATCTGACTTACTCACTACGAGACTAATTCATGAGTGGGATAGATAGGCTTCCCAA
CCTTTTCTTAGCTTAATGAGAGGTAGTATTCCAGGCTTCTTAGCTGAATGAGATAGGATCAATTA
TAGGATCAAGCTTCTCCTTACAACCTTCTGAGCTTCCCTTAATTAGTAGCTTAATTAGGTGAGGT
AAAGCTTCTACTACCCTATCTAGCTTCTGATTAGGGTTGAACCTC
Found at i:31146 original size:9 final size:9
Alignment explanation
Indices: 31132--31159 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
31122 GACCATAAGG
31132 GCCGCCATC
1 GCCGCCATC
31141 GCCGCCATC
1 GCCGCCATC
31150 GCCGCCATC
1 GCCGCCATC
31159 G
1 G
31160 AGAGGAGAGG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.11, C:0.54, G:0.25, T:0.11
Consensus pattern (9 bp):
GCCGCCATC
Left flanking sequence: Indices 30632 -- 31131
CACGCCCAAGCTGGGGCTTGGCCAGTGGGGAGCAGCCTGCGTAGACCTAAGAAATAGTCTAAAAG
GCCATTTGCGTGCGTTTTACGGCTACTTGACACGCCCAAGCTGGGAGCGGAGTGTTAGTGCCCTG
CGTAGACTGAATATAACCCTAAGAATACGGAATTACATATATAATGAATGAATGCATAATGACAT
ATATAATGAGATTGATTTCGGTCACTAGAGAGAGAGACGAAATCAAAGCACACTCGACTGCCTTT
GGTTACTTATTTGAGAGGAGGGGATGCGCAAGCAGGCTCGACTGTTAACCCCCCAAACCAATAAG
TAAACCCTAACCTTTAGGTGCTCGACCATAAGCCCCCCCACCCAATAAGTAAACCCTAATGCGCA
AGCAGGCTCGACTGTTAAGGAGAGGGAGAGGACTTTTAGGTGCTCGACCATAAGGTCCGGTAGGG
GCTCGACCATAAGGGCCGCCATCGATTTCTCGCTCGACCATAAGG
Right flanking sequence: Indices 31160 -- 31659
AGAGGAGAGGGAGAGGACCCTTTAGGGGGCTCGACCGTTAGGGAGAGGACCCTTTAGGGGGCTCG
ACCGTTAGGGAGAGGACCCTTTAGGGGGCTCGACCGTTAGGGAGAGGACCCTTTAGGGGGCTCGA
CCGTTAGGGAGAGGAAATGACATATATAATATATGCTTGGATTCGAGAGCGAGAGATAGAGAAAG
TAGTTTGAAAAAGGAGGGGAGCAGGATGATTTCACGAGCTCATGCTTTCGGGGCAGGGGAAGCAG
GCAACACCCTGCCCGCCGCGGGACGGACCTTCGCGGTCACTCCGATGCGAGTGCGATCAGGAGAA
AAAGGTCGGGCGGGTTCTACGCGCCCAGTGGGTGTGGGAATCACCTTCGGCTCCATTAGCAAGGA
ATATACATTAGGGGGCAGTAGGCGGCCCCATATCCCACTCACATTAGCACTCCATCCCAGCGCCA
TCACGGTGGTGAAATGAAAGGGCACCTAGGAACGGTATAGCATCA
Found at i:31200 original size:16 final size:16
Alignment explanation
Indices: 31181--31298 Score: 80
Period size: 16 Copynumber: 7.4 Consensus size: 16
31171 AGAGGACCCT
31181 TTAGGGGGCTCGACCG
1 TTAGGGGGCTCGACCG
* ** *
31197 TTAGGGAG-AGGACCCT
1 TTAGGGGGCTCGA-CCG
31213 TTAGGGGGCTCGACCG
1 TTAGGGGGCTCGACCG
* ** *
31229 TTAGGGAG-AGGACCCT
1 TTAGGGGGCTCGA-CCG
31245 TTAGGGGGCTCGACCG
1 TTAGGGGGCTCGACCG
* ** *
31261 TTAGGGAG-AGGACCCT
1 TTAGGGGGCTCGA-CCG
31277 TTAGGGGGCTCGACCG
1 TTAGGGGGCTCGACCG
31293 TTAGGG
1 TTAGGG
31299 AGAGGAAATG
Statistics
Matches: 72, Mismatches: 24, Indels: 12
0.67 0.22 0.11
Matches are distributed among these distances:
15 6 0.08
16 60 0.83
17 6 0.08
ACGTcount: A:0.18, C:0.21, G:0.42, T:0.19
Consensus pattern (16 bp):
TTAGGGGGCTCGACCG
Left flanking sequence: Indices 30681 -- 31180
AGAAATAGTCTAAAAGGCCATTTGCGTGCGTTTTACGGCTACTTGACACGCCCAAGCTGGGAGCG
GAGTGTTAGTGCCCTGCGTAGACTGAATATAACCCTAAGAATACGGAATTACATATATAATGAAT
GAATGCATAATGACATATATAATGAGATTGATTTCGGTCACTAGAGAGAGAGACGAAATCAAAGC
ACACTCGACTGCCTTTGGTTACTTATTTGAGAGGAGGGGATGCGCAAGCAGGCTCGACTGTTAAC
CCCCCAAACCAATAAGTAAACCCTAACCTTTAGGTGCTCGACCATAAGCCCCCCCACCCAATAAG
TAAACCCTAATGCGCAAGCAGGCTCGACTGTTAAGGAGAGGGAGAGGACTTTTAGGTGCTCGACC
ATAAGGTCCGGTAGGGGCTCGACCATAAGGGCCGCCATCGATTTCTCGCTCGACCATAAGGGCCG
CCATCGCCGCCATCGCCGCCATCGAGAGGAGAGGGAGAGGACCCT
Right flanking sequence: Indices 31299 -- 31798
AGAGGAAATGACATATATAATATATGCTTGGATTCGAGAGCGAGAGATAGAGAAAGTAGTTTGAA
AAAGGAGGGGAGCAGGATGATTTCACGAGCTCATGCTTTCGGGGCAGGGGAAGCAGGCAACACCC
TGCCCGCCGCGGGACGGACCTTCGCGGTCACTCCGATGCGAGTGCGATCAGGAGAAAAAGGTCGG
GCGGGTTCTACGCGCCCAGTGGGTGTGGGAATCACCTTCGGCTCCATTAGCAAGGAATATACATT
AGGGGGCAGTAGGCGGCCCCATATCCCACTCACATTAGCACTCCATCCCAGCGCCATCACGGTGG
TGAAATGAAAGGGCACCTAGGAACGGTATAGCATCAGGAACCTCACATTCCGAGGATCACATCTC
CATCCCCATATAAGTGAATCATCGAAACCCATGCCCTCGTCCCTCTTCAGCAGCCCCCGGGCACA
AAATGTACACAGAATAGAACCGCTGAGTACCGCTCGGAACGATTC
Found at i:31208 original size:32 final size:32
Alignment explanation
Indices: 31167--31304 Score: 276
Period size: 32 Copynumber: 4.3 Consensus size: 32
31157 TCGAGAGGAG
31167 AGGGAGAGGACCCTTTAGGGGGCTCGACCGTT
1 AGGGAGAGGACCCTTTAGGGGGCTCGACCGTT
31199 AGGGAGAGGACCCTTTAGGGGGCTCGACCGTT
1 AGGGAGAGGACCCTTTAGGGGGCTCGACCGTT
31231 AGGGAGAGGACCCTTTAGGGGGCTCGACCGTT
1 AGGGAGAGGACCCTTTAGGGGGCTCGACCGTT
31263 AGGGAGAGGACCCTTTAGGGGGCTCGACCGTT
1 AGGGAGAGGACCCTTTAGGGGGCTCGACCGTT
31295 AGGGAGAGGA
1 AGGGAGAGGA
31305 AATGACATAT
Statistics
Matches: 106, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 106 1.00
ACGTcount: A:0.20, C:0.20, G:0.42, T:0.17
Consensus pattern (32 bp):
AGGGAGAGGACCCTTTAGGGGGCTCGACCGTT
Left flanking sequence: Indices 30667 -- 31166
CCTGCGTAGACCTAAGAAATAGTCTAAAAGGCCATTTGCGTGCGTTTTACGGCTACTTGACACGC
CCAAGCTGGGAGCGGAGTGTTAGTGCCCTGCGTAGACTGAATATAACCCTAAGAATACGGAATTA
CATATATAATGAATGAATGCATAATGACATATATAATGAGATTGATTTCGGTCACTAGAGAGAGA
GACGAAATCAAAGCACACTCGACTGCCTTTGGTTACTTATTTGAGAGGAGGGGATGCGCAAGCAG
GCTCGACTGTTAACCCCCCAAACCAATAAGTAAACCCTAACCTTTAGGTGCTCGACCATAAGCCC
CCCCACCCAATAAGTAAACCCTAATGCGCAAGCAGGCTCGACTGTTAAGGAGAGGGAGAGGACTT
TTAGGTGCTCGACCATAAGGTCCGGTAGGGGCTCGACCATAAGGGCCGCCATCGATTTCTCGCTC
GACCATAAGGGCCGCCATCGCCGCCATCGCCGCCATCGAGAGGAG
Right flanking sequence: Indices 31305 -- 31804
AATGACATATATAATATATGCTTGGATTCGAGAGCGAGAGATAGAGAAAGTAGTTTGAAAAAGGA
GGGGAGCAGGATGATTTCACGAGCTCATGCTTTCGGGGCAGGGGAAGCAGGCAACACCCTGCCCG
CCGCGGGACGGACCTTCGCGGTCACTCCGATGCGAGTGCGATCAGGAGAAAAAGGTCGGGCGGGT
TCTACGCGCCCAGTGGGTGTGGGAATCACCTTCGGCTCCATTAGCAAGGAATATACATTAGGGGG
CAGTAGGCGGCCCCATATCCCACTCACATTAGCACTCCATCCCAGCGCCATCACGGTGGTGAAAT
GAAAGGGCACCTAGGAACGGTATAGCATCAGGAACCTCACATTCCGAGGATCACATCTCCATCCC
CATATAAGTGAATCATCGAAACCCATGCCCTCGTCCCTCTTCAGCAGCCCCCGGGCACAAAATGT
ACACAGAATAGAACCGCTGAGTACCGCTCGGAACGATTCATAGTA
Found at i:32303 original size:6 final size:6
Alignment explanation
Indices: 32292--32317 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
32282 CCGTCTGATG
32292 GATACA GATACA GATACA GATACA GA
1 GATACA GATACA GATACA GATACA GA
32318 CTTGGCTCGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.50, C:0.15, G:0.19, T:0.15
Consensus pattern (6 bp):
GATACA
Left flanking sequence: Indices 31792 -- 32291
ACGATTCATAGTATCGCCAAGGTAGGGGGGTTACCTTCGAAATGGTACATGAGGAACGAGGACAT
CGGGAACGATGAATTGAGTCAAAGAAGTAAGGATGCGGGATGCGAGGGTACGAGGGGATCTCATC
GAAGTTCTTGGATTTCAGGGGATTTCATGGAAGTTCTGGGGACATTACCTCTTAGGGCTCACTAT
TCATATGGCGAGGAATTTCTTTGATTTCTCATTTCGATCAAGGAATGTTCTCATCCTTATCAGTC
GAGCACCTTACCGGATCGTGATGCGGAAACGAACCTTGAGGACAATCTCGAATTGAAGGGTACGC
TTTCGCTCATCGGATGAGCTCCAGCGCTCCGGGACAGGATTTCGTGAACACCCTGACTGAACACT
ATTGGAGATGCACTCAATGGATCGAAATCCACTCCTCTCCCTTAGGGTCGAGCACCTAAAGGTCC
TTAACAGTCGTGCACCCTGCCGGGTCCTTGCCCCTCCGTCTGATG
Right flanking sequence: Indices 32318 -- 32817
CTTGGCTCGATGGATGCATATCCCTCGATAGCCGGGACTGGACTGGGTTTCTAGCTGAACCGATC
AAGCTGGGGTGAAGCGATGGGCGTGACCGACCGATCCTATTTGGTCCGTCATGCCCCTCCCATAT
CTCGGAAACAATTCCGACATATGAAACTTGAAAAGACACAAGGTGGAGGGTGGTGGGGGGACGCT
GGGATAGGTTAGGGTCCCCGCCTATGTGTCTTTTACACACCGCTTGTTACGATATGTAAGACAAT
GTAGGAGTTTCGCTACTGTACTGTAGCGTCATCTGAATGGAACGAATCGGAAGAAGAATTACACC
CCTCAATTTACAAGTTACAAGTCTCACCGTAACATTTGAAGGTAAGATTGCAAGCCCATTGCTAT
TTTCATCGATTCTGGAGAAATTCATATGTTCGTCTGGTCGTTTCCCACCCACACTTGCTCGGCGA
GCATCATAAACCCTTTCTGGACCGTCGAGGGACTATAATATTGGC
Found at i:34359 original size:29 final size:29
Alignment explanation
Indices: 34317--34372 Score: 94
Period size: 29 Copynumber: 1.9 Consensus size: 29
34307 AAGTAGGAAA
*
34317 GACCATTGTTTCTATGGAATAACCTAATG
1 GACCATTGTTTCTATAGAATAACCTAATG
*
34346 GACCTTTGTTTCTATAGAATAACCTAA
1 GACCATTGTTTCTATAGAATAACCTAA
34373 CAGAATAACC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (29 bp):
GACCATTGTTTCTATAGAATAACCTAATG
Left flanking sequence: Indices 33817 -- 34316
AAAACTTTATGCGGACGGGCATATCACTCTATTTGCTCCATTAACCCGAATATCACGCAAAATCA
CTACATGTGAGGCGCAAAAAGCATTGATTACACCAATTACAGACCCGGACGAGCTAGAGAAACAT
CAAAAGAGCGTCATTGAGTTCTATAGTCACAAGTTAGTGAGTTATCTTGCCTTTTACTGCAAGAG
CCATAATTCTCGCAAAACCAAAGGGTTGCTGAGAAAGAAAATGATCACGGCGTGTTTGCTTCATT
TGGCAAAAGTCTCTTCCACCCCCCTAGCCGCTATTAAGAAGAAATGGGGTCCGGCATTGGATAGA
GCCCCCGTGCCCTTTATAAATCGGAAACAGACAGATTCTGCGTTGAAGAACATACTTTTGAAATT
TCACCGGGGGCAACACAAGTTTCTGAAAGGCCCTCTCCCGGGGGTCGAGCGTTCGTTACCTCACC
ATCGGAATAGTGAGGACTCTGCCCCTAAAAGGCACAAGTAGGAAA
Right flanking sequence: Indices 34373 -- 34872
CAGAATAACCTAATGGACCTTTGTTTCTATAGAATAACCTAACAGAATAACCTAATGGACCCTTG
TTTCTATGGAATAACCTAATAGAATAACCTATTCGAGTATTTATGAATACGGCTCTGTCTCTTCG
AGCCAGAGAATGGGTCCTTGCCCCGGAGGGAAAGCTGCTTCGCACCTTACCTTAGCGTAATGACA
TATATAATATATGCATTTTCTGGTGTAATTACTGCTATCGAGTCATGATTGGAAGGCCCCCATCG
TTTCGCGCAGAGGTTCGCGAGATCGATCTAATTGCTTGCGAAATGACATATATAATGAGATTGAT
TTCGGTCACTAGAGAGAGAGACGAAATCAAAGCACACTCGACTGCCTTTGGTTACTTATTTGAGA
GGAGGGGATGCGCAAGCAGGCTCGACTGATAACCCCCCAAACCAATAAGTAAACCCTAACCTTTA
GGTGCTCGACCATAGGACCTTTAGGTGCTCGACCTTAAGGGAGAG
Found at i:34379 original size:13 final size:13
Alignment explanation
Indices: 34361--34385 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
34351 TTGTTTCTAT
34361 AGAATAACCTAAC
1 AGAATAACCTAAC
34374 AGAATAACCTAA
1 AGAATAACCTAA
34386 TGGACCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.20, G:0.08, T:0.16
Consensus pattern (13 bp):
AGAATAACCTAAC
Left flanking sequence: Indices 33861 -- 34360
CCCGAATATCACGCAAAATCACTACATGTGAGGCGCAAAAAGCATTGATTACACCAATTACAGAC
CCGGACGAGCTAGAGAAACATCAAAAGAGCGTCATTGAGTTCTATAGTCACAAGTTAGTGAGTTA
TCTTGCCTTTTACTGCAAGAGCCATAATTCTCGCAAAACCAAAGGGTTGCTGAGAAAGAAAATGA
TCACGGCGTGTTTGCTTCATTTGGCAAAAGTCTCTTCCACCCCCCTAGCCGCTATTAAGAAGAAA
TGGGGTCCGGCATTGGATAGAGCCCCCGTGCCCTTTATAAATCGGAAACAGACAGATTCTGCGTT
GAAGAACATACTTTTGAAATTTCACCGGGGGCAACACAAGTTTCTGAAAGGCCCTCTCCCGGGGG
TCGAGCGTTCGTTACCTCACCATCGGAATAGTGAGGACTCTGCCCCTAAAAGGCACAAGTAGGAA
AGACCATTGTTTCTATGGAATAACCTAATGGACCTTTGTTTCTAT
Right flanking sequence: Indices 34386 -- 34885
TGGACCTTTGTTTCTATAGAATAACCTAACAGAATAACCTAATGGACCCTTGTTTCTATGGAATA
ACCTAATAGAATAACCTATTCGAGTATTTATGAATACGGCTCTGTCTCTTCGAGCCAGAGAATGG
GTCCTTGCCCCGGAGGGAAAGCTGCTTCGCACCTTACCTTAGCGTAATGACATATATAATATATG
CATTTTCTGGTGTAATTACTGCTATCGAGTCATGATTGGAAGGCCCCCATCGTTTCGCGCAGAGG
TTCGCGAGATCGATCTAATTGCTTGCGAAATGACATATATAATGAGATTGATTTCGGTCACTAGA
GAGAGAGACGAAATCAAAGCACACTCGACTGCCTTTGGTTACTTATTTGAGAGGAGGGGATGCGC
AAGCAGGCTCGACTGATAACCCCCCAAACCAATAAGTAAACCCTAACCTTTAGGTGCTCGACCAT
AGGACCTTTAGGTGCTCGACCTTAAGGGAGAGGGAGAGGATGCGC
Found at i:34380 original size:42 final size:42
Alignment explanation
Indices: 34333--34468 Score: 245
Period size: 42 Copynumber: 3.2 Consensus size: 42
34323 TGTTTCTATG
34333 GAATAACCTAATGGACCTTTGTTTCTATAGAATAACCTAACA
1 GAATAACCTAATGGACCTTTGTTTCTATAGAATAACCTAACA
34375 GAATAACCTAATGGACCTTTGTTTCTATAGAATAACCTAACA
1 GAATAACCTAATGGACCTTTGTTTCTATAGAATAACCTAACA
* * *
34417 GAATAACCTAATGGACCCTTGTTTCTATGGAATAACCTAATA
1 GAATAACCTAATGGACCTTTGTTTCTATAGAATAACCTAACA
34459 GAATAACCTA
1 GAATAACCTA
34469 TTCGAGTATT
Statistics
Matches: 91, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
42 91 1.00
ACGTcount: A:0.38, C:0.19, G:0.12, T:0.30
Consensus pattern (42 bp):
GAATAACCTAATGGACCTTTGTTTCTATAGAATAACCTAACA
Left flanking sequence: Indices 33833 -- 34332
GGGCATATCACTCTATTTGCTCCATTAACCCGAATATCACGCAAAATCACTACATGTGAGGCGCA
AAAAGCATTGATTACACCAATTACAGACCCGGACGAGCTAGAGAAACATCAAAAGAGCGTCATTG
AGTTCTATAGTCACAAGTTAGTGAGTTATCTTGCCTTTTACTGCAAGAGCCATAATTCTCGCAAA
ACCAAAGGGTTGCTGAGAAAGAAAATGATCACGGCGTGTTTGCTTCATTTGGCAAAAGTCTCTTC
CACCCCCCTAGCCGCTATTAAGAAGAAATGGGGTCCGGCATTGGATAGAGCCCCCGTGCCCTTTA
TAAATCGGAAACAGACAGATTCTGCGTTGAAGAACATACTTTTGAAATTTCACCGGGGGCAACAC
AAGTTTCTGAAAGGCCCTCTCCCGGGGGTCGAGCGTTCGTTACCTCACCATCGGAATAGTGAGGA
CTCTGCCCCTAAAAGGCACAAGTAGGAAAGACCATTGTTTCTATG
Right flanking sequence: Indices 34469 -- 34968
TTCGAGTATTTATGAATACGGCTCTGTCTCTTCGAGCCAGAGAATGGGTCCTTGCCCCGGAGGGA
AAGCTGCTTCGCACCTTACCTTAGCGTAATGACATATATAATATATGCATTTTCTGGTGTAATTA
CTGCTATCGAGTCATGATTGGAAGGCCCCCATCGTTTCGCGCAGAGGTTCGCGAGATCGATCTAA
TTGCTTGCGAAATGACATATATAATGAGATTGATTTCGGTCACTAGAGAGAGAGACGAAATCAAA
GCACACTCGACTGCCTTTGGTTACTTATTTGAGAGGAGGGGATGCGCAAGCAGGCTCGACTGATA
ACCCCCCAAACCAATAAGTAAACCCTAACCTTTAGGTGCTCGACCATAGGACCTTTAGGTGCTCG
ACCTTAAGGGAGAGGGAGAGGATGCGCAAGCAGGCTCGACTGTTAAGGAGAGGGAGAGGGAGAGG
ACCTTTAGGTGCTCGACTGTTAAGGATGCGCAAGCATGCTCGACT
Found at i:34421 original size:13 final size:13
Alignment explanation
Indices: 34403--34427 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
34393 TTGTTTCTAT
34403 AGAATAACCTAAC
1 AGAATAACCTAAC
34416 AGAATAACCTAA
1 AGAATAACCTAA
34428 TGGACCCTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.20, G:0.08, T:0.16
Consensus pattern (13 bp):
AGAATAACCTAAC
Left flanking sequence: Indices 33903 -- 34402
CATTGATTACACCAATTACAGACCCGGACGAGCTAGAGAAACATCAAAAGAGCGTCATTGAGTTC
TATAGTCACAAGTTAGTGAGTTATCTTGCCTTTTACTGCAAGAGCCATAATTCTCGCAAAACCAA
AGGGTTGCTGAGAAAGAAAATGATCACGGCGTGTTTGCTTCATTTGGCAAAAGTCTCTTCCACCC
CCCTAGCCGCTATTAAGAAGAAATGGGGTCCGGCATTGGATAGAGCCCCCGTGCCCTTTATAAAT
CGGAAACAGACAGATTCTGCGTTGAAGAACATACTTTTGAAATTTCACCGGGGGCAACACAAGTT
TCTGAAAGGCCCTCTCCCGGGGGTCGAGCGTTCGTTACCTCACCATCGGAATAGTGAGGACTCTG
CCCCTAAAAGGCACAAGTAGGAAAGACCATTGTTTCTATGGAATAACCTAATGGACCTTTGTTTC
TATAGAATAACCTAACAGAATAACCTAATGGACCTTTGTTTCTAT
Right flanking sequence: Indices 34428 -- 34927
TGGACCCTTGTTTCTATGGAATAACCTAATAGAATAACCTATTCGAGTATTTATGAATACGGCTC
TGTCTCTTCGAGCCAGAGAATGGGTCCTTGCCCCGGAGGGAAAGCTGCTTCGCACCTTACCTTAG
CGTAATGACATATATAATATATGCATTTTCTGGTGTAATTACTGCTATCGAGTCATGATTGGAAG
GCCCCCATCGTTTCGCGCAGAGGTTCGCGAGATCGATCTAATTGCTTGCGAAATGACATATATAA
TGAGATTGATTTCGGTCACTAGAGAGAGAGACGAAATCAAAGCACACTCGACTGCCTTTGGTTAC
TTATTTGAGAGGAGGGGATGCGCAAGCAGGCTCGACTGATAACCCCCCAAACCAATAAGTAAACC
CTAACCTTTAGGTGCTCGACCATAGGACCTTTAGGTGCTCGACCTTAAGGGAGAGGGAGAGGATG
CGCAAGCAGGCTCGACTGTTAAGGAGAGGGAGAGGGAGAGGACCT
Found at i:35225 original size:36 final size:36
Alignment explanation
Indices: 35185--35258 Score: 148
Period size: 36 Copynumber: 2.1 Consensus size: 36
35175 AAGGAGAGGA
35185 ATTATATATGTCATTATGCTTTCTGATCATCGGTCC
1 ATTATATATGTCATTATGCTTTCTGATCATCGGTCC
35221 ATTATATATGTCATTATGCTTTCTGATCATCGGTCC
1 ATTATATATGTCATTATGCTTTCTGATCATCGGTCC
35257 AT
1 AT
35259 CGATTTCGCT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.23, C:0.19, G:0.14, T:0.45
Consensus pattern (36 bp):
ATTATATATGTCATTATGCTTTCTGATCATCGGTCC
Left flanking sequence: Indices 34685 -- 35184
TAATGAGATTGATTTCGGTCACTAGAGAGAGAGACGAAATCAAAGCACACTCGACTGCCTTTGGT
TACTTATTTGAGAGGAGGGGATGCGCAAGCAGGCTCGACTGATAACCCCCCAAACCAATAAGTAA
ACCCTAACCTTTAGGTGCTCGACCATAGGACCTTTAGGTGCTCGACCTTAAGGGAGAGGGAGAGG
ATGCGCAAGCAGGCTCGACTGTTAAGGAGAGGGAGAGGGAGAGGACCTTTAGGTGCTCGACTGTT
AAGGATGCGCAAGCATGCTCGACTGTTAACCCCCCAACCCAATAAGTAAACCCTAACCTTTAGGT
GCTCGACTTTTAAGGAGAGGAGAGGAGAGGATGCGGAGCACGCTCGACCACCGCCCACCACCCAA
TAAGCATCAAGGAAGGCAGGGCTCGACCAACGGGAGAGGATGCCCCCGGCAGGGTGAGGTACGAA
CGCTCGACTAATAAGGCCGCCATCGCTCGACTGATAAGGAGAGGA
Right flanking sequence: Indices 35259 -- 35758
CGATTTCGCTCACTTCTGCCATTTCTTCCAGTCATTCATTACATATCTAAGCAGGGCACTAACGC
CAGCTTGGGAGTGTCAAATGGTGTGTCTGGAGATCAAATTTTCATGTCCGTAGATTAGTGGTTTG
TTCAAATGATTTGAGTCTGGAGTGGTTTGTTCAAATGATTTGAGTCTGGAGTGGTTTGTCTGGTC
TGGAGTTTTTGAATTTCCTAATCTTTTCAATTTGCTGGGGTAAGGACCCGACAGGGGGCTCGACT
GATAAGGAGAGGAATTTCTTGCTTGCTTGACGTTAGGAAAGCAAGGTCCCGGAGGGGCTTGCGCT
TCCTAGTGCAAGGAAGAAACCAAAGGGGTTAGGACAATCCGAAGGATGTTGGAGGGTGCAGAATC
CGAAGGATGTTGGAGGGTGCAGAATCCGAAGGATGTTGGAGGGTGCAGAATCCTTCATCTATAAA
AGAGAAACCAAAGGTAGGGCAATGCATAATGACATATATAATGAG
Found at i:35422 original size:29 final size:29
Alignment explanation
Indices: 35380--35447 Score: 136
Period size: 29 Copynumber: 2.3 Consensus size: 29
35370 TCCGTAGATT
35380 AGTGGTTTGTTCAAATGATTTGAGTCTGG
1 AGTGGTTTGTTCAAATGATTTGAGTCTGG
35409 AGTGGTTTGTTCAAATGATTTGAGTCTGG
1 AGTGGTTTGTTCAAATGATTTGAGTCTGG
35438 AGTGGTTTGT
1 AGTGGTTTGT
35448 CTGGTCTGGA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 39 1.00
ACGTcount: A:0.19, C:0.06, G:0.32, T:0.43
Consensus pattern (29 bp):
AGTGGTTTGTTCAAATGATTTGAGTCTGG
Left flanking sequence: Indices 34880 -- 35379
ATGCGCAAGCAGGCTCGACTGTTAAGGAGAGGGAGAGGGAGAGGACCTTTAGGTGCTCGACTGTT
AAGGATGCGCAAGCATGCTCGACTGTTAACCCCCCAACCCAATAAGTAAACCCTAACCTTTAGGT
GCTCGACTTTTAAGGAGAGGAGAGGAGAGGATGCGGAGCACGCTCGACCACCGCCCACCACCCAA
TAAGCATCAAGGAAGGCAGGGCTCGACCAACGGGAGAGGATGCCCCCGGCAGGGTGAGGTACGAA
CGCTCGACTAATAAGGCCGCCATCGCTCGACTGATAAGGAGAGGAATTATATATGTCATTATGCT
TTCTGATCATCGGTCCATTATATATGTCATTATGCTTTCTGATCATCGGTCCATCGATTTCGCTC
ACTTCTGCCATTTCTTCCAGTCATTCATTACATATCTAAGCAGGGCACTAACGCCAGCTTGGGAG
TGTCAAATGGTGTGTCTGGAGATCAAATTTTCATGTCCGTAGATT
Right flanking sequence: Indices 35448 -- 35947
CTGGTCTGGAGTTTTTGAATTTCCTAATCTTTTCAATTTGCTGGGGTAAGGACCCGACAGGGGGC
TCGACTGATAAGGAGAGGAATTTCTTGCTTGCTTGACGTTAGGAAAGCAAGGTCCCGGAGGGGCT
TGCGCTTCCTAGTGCAAGGAAGAAACCAAAGGGGTTAGGACAATCCGAAGGATGTTGGAGGGTGC
AGAATCCGAAGGATGTTGGAGGGTGCAGAATCCGAAGGATGTTGGAGGGTGCAGAATCCTTCATC
TATAAAAGAGAAACCAAAGGTAGGGCAATGCATAATGACATATATAATGAGATATCTCTTTGTAT
ACGATATTCTTCTCCAGTTCCTCTCCTCTCCTTATCAGTCGAGCCCCCTAAAGGGTCCTGTTAGT
CGAGCGATGGCGGCCTTATTAGTCGAGCGTTCGTTCCTCACCCTGCCGGACCTTATGGTCGAGCC
ATTCTTCCTCTCCCTCACCATATGACAAGTACTTATCTCCTTGAT
Found at i:35652 original size:26 final size:26
Alignment explanation
Indices: 35619--35701 Score: 166
Period size: 26 Copynumber: 3.2 Consensus size: 26
35609 GGGTTAGGAC
35619 AATCCGAAGGATGTTGGAGGGTGCAG
1 AATCCGAAGGATGTTGGAGGGTGCAG
35645 AATCCGAAGGATGTTGGAGGGTGCAG
1 AATCCGAAGGATGTTGGAGGGTGCAG
35671 AATCCGAAGGATGTTGGAGGGTGCAG
1 AATCCGAAGGATGTTGGAGGGTGCAG
35697 AATCC
1 AATCC
35702 TTCATCTATA
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 57 1.00
ACGTcount: A:0.28, C:0.13, G:0.40, T:0.19
Consensus pattern (26 bp):
AATCCGAAGGATGTTGGAGGGTGCAG
Left flanking sequence: Indices 35119 -- 35618
CCCGGCAGGGTGAGGTACGAACGCTCGACTAATAAGGCCGCCATCGCTCGACTGATAAGGAGAGG
AATTATATATGTCATTATGCTTTCTGATCATCGGTCCATTATATATGTCATTATGCTTTCTGATC
ATCGGTCCATCGATTTCGCTCACTTCTGCCATTTCTTCCAGTCATTCATTACATATCTAAGCAGG
GCACTAACGCCAGCTTGGGAGTGTCAAATGGTGTGTCTGGAGATCAAATTTTCATGTCCGTAGAT
TAGTGGTTTGTTCAAATGATTTGAGTCTGGAGTGGTTTGTTCAAATGATTTGAGTCTGGAGTGGT
TTGTCTGGTCTGGAGTTTTTGAATTTCCTAATCTTTTCAATTTGCTGGGGTAAGGACCCGACAGG
GGGCTCGACTGATAAGGAGAGGAATTTCTTGCTTGCTTGACGTTAGGAAAGCAAGGTCCCGGAGG
GGCTTGCGCTTCCTAGTGCAAGGAAGAAACCAAAGGGGTTAGGAC
Right flanking sequence: Indices 35702 -- 36201
TTCATCTATAAAAGAGAAACCAAAGGTAGGGCAATGCATAATGACATATATAATGAGATATCTCT
TTGTATACGATATTCTTCTCCAGTTCCTCTCCTCTCCTTATCAGTCGAGCCCCCTAAAGGGTCCT
GTTAGTCGAGCGATGGCGGCCTTATTAGTCGAGCGTTCGTTCCTCACCCTGCCGGACCTTATGGT
CGAGCCATTCTTCCTCTCCCTCACCATATGACAAGTACTTATCTCCTTGATCTTTATGCGAAACT
AAAGTCAACGAAATCATACGAGTCAATAGATTTTCTTTCTTAGGGCCTTCGATCCACGTACGTCT
TACGGTCTTGACCTGCCTGAGAGAGGGGAACCACCTTACTGGATAATAGTAGACTGCCCGAGTGT
CAATGGTAGGCGTGGAGAGCTTTTTGCGGGGAAACTTGCAAGTACAGTTTGGGGGGAGGCGGATG
TACCCGAACAAGGGCTGGGCGTCGACCCAACCTTATGAGTATTCA
Found at i:36971 original size:9 final size:9
Alignment explanation
Indices: 36957--36984 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
36947 GACTGTTAAG
36957 GCCGCCATC
1 GCCGCCATC
36966 GCCGCCATC
1 GCCGCCATC
36975 GCCGCCATC
1 GCCGCCATC
36984 G
1 G
36985 ATTTCTCGCT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.11, C:0.54, G:0.25, T:0.11
Consensus pattern (9 bp):
GCCGCCATC
Left flanking sequence: Indices 36457 -- 36956
TGCTACGGTCAGTGCAGTGAGATTCGTGGAACCAATCATGCCTTTACGCGTGCGCCCGGATACAT
AGGCCGACTGCTGAGCCCACTCTGGCTCAGCCGCACCTTCTCGAACAGGCCAATTCGGTGCGAGC
TACCTAAGGAGCTATTATAGTGATATCGTGGCTAGAGCAGTAGGGAATAGAGGAGCCTCTCTAGC
TAGTAATAAATGAAATAATAAGGGGGCTCCGGTGGAGTGGAGGAGACGGTTAGGATAACGAACTC
GAAACGCGGAGCCCGAGGATATAGCGATTAGTGGGCCAATAGCGCCCCGCCGCAGTCGGTGGCAT
TACCTTCCGCGGCACTCACTCGAGGAACCTCATAATTTGTTACGGCAACTACGATCGATAGTGAA
AGAACCCTGAGCTAGCTCGGGCTTTGGAAATATAGGGACGGAGTCGCTCGACCATAAGGTAATTG
ATTTGCTCGACTGATAAGGATGCGCAAGCAGGCTCGACTGTTAAG
Right flanking sequence: Indices 36985 -- 37484
ATTTCTCGCTCGACCATAAGGTCGCATAGATTTGACCGGTCTTACGCATAGCGAAGCTTACCTGA
GGCTCAGGTGTCTTGAGCATAGCGAAGACATTTCTTTATTCCCCTCAAAGAGCGAGCATAGCGAA
GGCCAGCTCAGGCGCATAGCTCAGGATAAGCATAGCGGCATAGCCCTTACCTTCTCAGGTAACTT
ACCTGAGCATAGCAAAGGTCGATCTTACCTGAGCTCTGCTCAGGGCTCTCATTCATTTTCGGCCT
TACCGCCGCCGCTATGCTTAAGTGATAACCTGATGCTATGCCTTCTCGCAGGGATAACACAAATT
CACACACGCTCGCGCAAGGACCTAAATTCCCATTAGGAGGTTGAACCAAGGACCTGTGGAAGTCG
GGGCTACCCCGTCCCCATGGCAACCAGTGTCTTGAGGGAGGAGTTCAGAGGCCTTCTAGTAGCAC
GGACCTATGCCTCTCCAGGTCATGCGAAAGAGGCCAGTCCAGGAT
Found at i:39539 original size:15 final size:15
Alignment explanation
Indices: 39519--39548 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
39509 CTCGTCCGGA
39519 TCCAGCTGCTATGAG
1 TCCAGCTGCTATGAG
39534 TCCAGCTGCTATGAG
1 TCCAGCTGCTATGAG
39549 GAGGTCTGCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.20, C:0.27, G:0.27, T:0.27
Consensus pattern (15 bp):
TCCAGCTGCTATGAG
Left flanking sequence: Indices 39019 -- 39518
ATAAGATTGATATATCGTTCGCTTCGATCCCCTATCATTTTAGGTGCTTCATAGCAAGAGCGTGG
TGCCTATAGGGAGGAGTTCTCTCCATCGGGAGCCCCAACAAAGCGAGCATCCAGGGGAGTTACCA
ATTCGGTTGATTATTCAGAGTGAGCTGACCCATAACCGGTTTCTCTATTTCATAAGTAGTTCAAG
ATTGATATCTAGCTTCTGCAACTTATTAGTACCTAAAGACTACTACTGAATTCTCAAAAATGAAA
TGATACAGATATGGATCCCGCGCCAGTAGAATCAAGGGCTAGGGGGGGAAATAGCACCCGCGGCA
TCCTTTCCGGTCCCAATTAGGGATCGAGGCCCAGAGTAAGCTTCCCACCACCGCCGTCTCGCCTA
GGGTCCCTTCCAGTTCTAGCTTTCTTACTTGCATTCCTTCCTGTACCAGCTCCTTACATCCCTTC
ATCTCGCCCGGTATCCCTGTTTCGGAAGCCATCACCTCGTCCGGA
Right flanking sequence: Indices 39549 -- 40048
GAGGTCTGCAGCAGGTTAGGTTTCCAAAGATAGGGCTAAAGCTCTAAGGCTTGTATATAGAGGTG
TGGCAGAGTGTGCAGCTTTGTTTGCTCCAATGTCTCTGTCTTCAGTTTGAGATGGGGAACTTCTT
TTATCCGTCCTCCATGCACCCGCTCCTTATTCTCGGCTTCAGTCAGTTTTCCTCTCGGCTGAAGC
CTTCCTCTCAGCTTCGGATTGTGCATCTTCAGATACAATTGAAAGTTGACAATGAAAACTTAGAT
ATGCGAGTTCAAGTGTGAGACGCAGATATGCAATATCGTATAGTAATAGATTGTAGTAGATATGG
CTGCAATGAGGTCAGCTTCATGGCAATACTCGTTCATGGCGAGTGCAAGTTCAACGTAGATTAGA
ATTGTTATAGAGATAGAATTGGGAAATCTAGGGACAAGTGAAACCTCTCCTTTTGGCCTTCGTCT
TTTGCCCTCGTACCTCGGGCGAAGGGTTCGTCGTACCTCCCCTCA
Found at i:41757 original size:20 final size:20
Alignment explanation
Indices: 41732--41769 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
41722 AAGTCAAAGG
41732 CTCTATGCCGAT-ATCATAGT
1 CTCTATG-CGATCATCATAGT
41752 CTCTATGCGATCATCATA
1 CTCTATGCGATCATCATA
41770 TGTGAAAACT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.26, C:0.26, G:0.13, T:0.34
Consensus pattern (20 bp):
CTCTATGCGATCATCATAGT
Left flanking sequence: Indices 41232 -- 41731
ATCCAATTCTATTTATTTAAGAGCACCAACTTCTCCATGGCAACATTGTATGTGAAAATGTCAAT
GGCCTTGGTAACATTATTCAACCCATGGAGAGCGGAAGGAGACCAGCCACCTTTGGCATGGGCTT
TGTCTAGGAGAAATTAGAGTGATAGAAAGAGAATCAGATTATTGAAATCTAGGGACCTTTCAAAC
GTATCTATGGCGATATAATAAGTGAAAACCAGGTGATTGAAAGGTGCACACGTAGAGATTACGAT
ATTCTATTGGAACATTGATTAGCTTCATGGCTATGAACCACGTGGATATGTGAGATCATATAGTA
GTGGAATTAGACCCAGATTTCTTATTCTTTGTTTTGTTCGGATGGGCACACACACTAAAACCTAT
AGCTTATTCGCTGGAGCTCAGGAAGATAGGTTCAGGTAGAGTAGAGATGGCAACATCATATGTGA
AAGATATATATTGTTCTCTGTTCATGGCAAGTAACAAGTCAAAGG
Right flanking sequence: Indices 41770 -- 42269
TGTGAAAACTTATCTATGCAAGCTCGTATAGTCAGAGGTTGTAGTAGATCCGACTGCTATGGCAA
GGTCTTCTGCAGGCCAGGTTTATCAGCTAGCTAGGTCTTCTCCGAGTCCAAGTTCAACTTACTTC
TCTATGGGCCATGTGATACTGTATATGAACCATGTAGATATGCGAGTACAAGTGCAAAACTTAGA
TATGCGCTTGAAACTGGGTGCAAGGGCATACCAGCAAGAGAGAAACGATCAGAGAAAAAGGGCCA
ACTAACTCAAGAGGTTTCATTGATAGCCGTCATAAAATCAGACGAAATCAAGTGGTGTTGTGCAT
GGGCTGGCTGCTTTGGCCAGGACTTATCCATCCATGGCAACATCATATATGAACATTGGTCAGCT
GCTTCTTCATGGCTATGAAGATTCAAAGTAACCGAGCGGATTCTCTTAGCCCAGCAGCTCTGGCA
TAAGCACCTGGGGCCTTATTATGTAGTGGATCTCCACCAGAGCAT
Found at i:43337 original size:20 final size:20
Alignment explanation
Indices: 43301--43340 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
43291 TCCCTTCCTT
*
43301 CCTCTCCCTTATGGTCGAGC
1 CCTCTCCCTTATAGTCGAGC
43321 CCTCT-CCTTATTAGTCGAGC
1 CCTCTCCCTTA-TAGTCGAGC
43341 GTTCGTACCT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 5 0.28
20 13 0.72
ACGTcount: A:0.12, C:0.38, G:0.17, T:0.33
Consensus pattern (20 bp):
CCTCTCCCTTATAGTCGAGC
Left flanking sequence: Indices 42801 -- 43300
GTTTTTTAGCGGCCAAGTTCCTTGCCCTCGGAAGCGCAAGACCTCCGGACCTTCTTTTCTTTGTG
TTCCAACTGTGAATGATGACTCTTGGATTGACTAGCGGCCAAGTTCCTTGCCCTCTCTCTATTGC
AAGGGTCTTCAATTGCAATATCTCTATTGGGCCTTTGTCTTTCTATCTATCTTTCTTCCGCGATC
AATTGAACTGTTTGTTGTTTTAGGTAGCCATTCAACACCATTAGCATTTATAGTGTCTTAGTTGA
TGGTCAAATTAGCTTATAGCTGTGGTGTTATTAATGGGACCTCTTTTCCCTCTATGCTCTAGTTG
AATAGCAGTTGTTTTATGGTAAAATGGGCTCTCTAGCTCAAGCTGTCTGACCCAAACTCACATAG
GGCTTCACCATAGTAGCATAGTCAAAGAAATTGCAAAACCTTTTTCCCCTCCCCAGTCAATTGCT
AACGCTAATGGTTGCTACCCCACCTGTTTATTCCTTCCCTTCCTT
Right flanking sequence: Indices 43341 -- 43840
GTTCGTACCTCACCCTGCCGGGGGCATCCTCATTATTTCGTATTCGTAACAGTGTTCCGTCCCGT
TCATTGTTAAGTTGAAGTATTCCCATAGTTCCGTCCCGTTCATTGTTAAGTCAGCCATTTGCTAA
AGCTCTTTATTTTGGAACACTATGCTCTAATTAGCGCTCTGCTCTAGCTATAGGTTTATAAGCGG
ATCCACCATTGTTTATTTGCCCCCGTAGGGTATCATGCTATGAATTCTCAAGGTTCAAAGTGTCT
GTCCAGTTTGGGTGAATCGTAAAGAGCAGCAGTCGAAACTCCAGGGAGTTGAGTCAAGAACATAA
GGGAGTTGAAAGGAATGCAGTAATGTGTAAAGTGAAACTGGTATAATGCGTATTGACCTGAATGC
TCATCTCGTTTCCTATCGGGCTGTTCGAAGTGAAACCAAGTTTAGGGAAACGAAGGCGAGCGACC
CCCCCCACCCGCTAATATCAAGGGGGTTTGCGTAGCCAGTAGTTT
Found at i:44745 original size:14 final size:14
Alignment explanation
Indices: 44726--44757 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
44716 CCGAGTAGCC
*
44726 CCCAGTCTGATCAG
1 CCCAGTCTGATAAG
44740 CCCAGTCTGATAAG
1 CCCAGTCTGATAAG
44754 CCCA
1 CCCA
44758 ACCGTGCAGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.25, C:0.38, G:0.19, T:0.19
Consensus pattern (14 bp):
CCCAGTCTGATAAG
Left flanking sequence: Indices 44226 -- 44725
CCTCCTGTTCCGGTGTGTAATGAGGATGCGCAAGCAGGCTCGACCATAAGGGAGAGGTTATTTCG
GATATAGGCAACCGGTAATCGAGACCTCCTTCCTGGGACTGATGGCCTTTCGGCTATTGGCACTG
ACAAGCTGGCTATGATGGGTACTCGGACTAGGGACTATGCTGGACTACCGGCAATGGCAACTGGC
TATCTTATCTATCGACTTCATTCAACGACTATCGACTATCAGCACCTTCGGGCATCTCAGATTGT
CTATGATGACTGTCAATGAGTACTTGGCACTGACTACTTGGCACCAAGCATAGTTTTATAGCTGC
ACAAACCATAGCTTCTAGCTGCACTGACTGTATCCAGCCCAGTCGAGATAGCAAACCAAGCCAAG
TTGAATAGTAGTGCAGCAGCCGCAGTTGATTAGCCAATCTGATTAGCAAATAGCCAAGCGTTTGA
GTATCCAAGTTGAGTATCTGAGTATCCAATCCCAACCGAGTAGCC
Right flanking sequence: Indices 44758 -- 45257
ACCGTGCAGTCCAGCCCCCCCCCAGGTAGGAGATTCAAATGTTCCGGTAGCGTTAAGTGAGTTAG
AGGTCGAGGTAGAGTGTTGGAGGGTGGAGAACGGGTACGACAGATTATCCCTCGCTGGATGGGTA
ATTAGATATATTCAAGTAGAAAATCAAGCTAAGCATCGAATCAACACTGGGATAAACACCTGAAT
CGAGTGGGTCAAAACCTGTCAATCATAGGGAAACTATCTGAAAGGGTATAGTGCAGTTAAGATAA
AATAGATTTCGTGCTCCGAAATTCTTTGTCCCCGCAAAGCGAGCAATTTGATTAGGAAAGAATGT
CAAATGAGTCTGTTTTGTAGAACCGGTAACCAAGTATCCAAGCCAAGTATCCAATCCAAGTAGCC
CAGTGGAGTATTATCCCATCCCAGGATCCCATGAGCTCAACCGAGTAGCCGATTCGAGCAGCTGA
GTATCCCAGCCCAGCTATTTTCATTCTTTCCTATGCAGCAATGAT
Found at i:45130 original size:13 final size:13
Alignment explanation
Indices: 45112--45144 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
45102 GAACCGGTAA
45112 CCAAGTATCCAAG
1 CCAAGTATCCAAG
*
45125 CCAAGTATCCAAT
1 CCAAGTATCCAAG
45138 CCAAGTA
1 CCAAGTA
45145 GCCCAGTGGA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.39, C:0.30, G:0.12, T:0.18
Consensus pattern (13 bp):
CCAAGTATCCAAG
Left flanking sequence: Indices 44612 -- 45111
CAAGTTGAATAGTAGTGCAGCAGCCGCAGTTGATTAGCCAATCTGATTAGCAAATAGCCAAGCGT
TTGAGTATCCAAGTTGAGTATCTGAGTATCCAATCCCAACCGAGTAGCCCCCAGTCTGATCAGCC
CAGTCTGATAAGCCCAACCGTGCAGTCCAGCCCCCCCCCAGGTAGGAGATTCAAATGTTCCGGTA
GCGTTAAGTGAGTTAGAGGTCGAGGTAGAGTGTTGGAGGGTGGAGAACGGGTACGACAGATTATC
CCTCGCTGGATGGGTAATTAGATATATTCAAGTAGAAAATCAAGCTAAGCATCGAATCAACACTG
GGATAAACACCTGAATCGAGTGGGTCAAAACCTGTCAATCATAGGGAAACTATCTGAAAGGGTAT
AGTGCAGTTAAGATAAAATAGATTTCGTGCTCCGAAATTCTTTGTCCCCGCAAAGCGAGCAATTT
GATTAGGAAAGAATGTCAAATGAGTCTGTTTTGTAGAACCGGTAA
Right flanking sequence: Indices 45145 -- 45644
GCCCAGTGGAGTATTATCCCATCCCAGGATCCCATGAGCTCAACCGAGTAGCCGATTCGAGCAGC
TGAGTATCCCAGCCCAGCTATTTTCATTCTTTCCTATGCAGCAATGATCTCCTATTTGCAATGAA
TTTTTCCAGCCCAGCGCATGAGCCCAACCGAGTGTCCCATCCCCTCCCATAAGCCCAAGCCGAGC
AACCCAGCCCAGCTATGACCGGCTTCCAATGAATGAATGACTATTGGTGGTAATGACTTACTACT
ATGACTGTTTGGCACCATCACTGGCTATTGGCGACCACTGGCTGCTGCTATTTGACCCTCTGACA
AGTTCCAACCTCCTGTCAATCTGTTGCTTATGGGGCGGATGCTGTAGTAACAAAGGTTCCGTAGG
TGAAAGTGAGGTCGAGGTTCGAGGTGGTTCCTTAGCGGTAAGTTTGTAGAGGCCTTCTCTCTATC
GGTAGATGTGGGCTTTCTATTTGTCCGTCCGTTGGACCGCCCGCC
Found at i:47044 original size:12 final size:12
Alignment explanation
Indices: 47027--47062 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
47017 CAGTAGCAGC
*
47027 CGATGCTGATGT
1 CGATGCCGATGT
47039 CGATGCCGATGT
1 CGATGCCGATGT
*
47051 CGATGCCAATGT
1 CGATGCCGATGT
47063 TCATCCCGTA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.19, C:0.22, G:0.31, T:0.28
Consensus pattern (12 bp):
CGATGCCGATGT
Left flanking sequence: Indices 46527 -- 47026
CAGCCTCCCCTACGTTGATGATTTCTGGCTGACTTATTAGGTTGTTAAGGACAGATAGGACTCTT
CCCTCCATCTCCTAAGTTGGTGAAGTAAAGTCTGATAGGTGGATAGCATGCCTCCTTCTTACAAA
GTATTACTGTCTGAAGCAATACATCCATTACTAAGTCTGAGGTTGTCTGATCCCATCCTGATAAG
AGGGGAATAGTTGTACCTCCATTTCTAAAGGCAAGTGGTATAGGGAAAAGGTCTAGTTATTGCTG
CAGGTGGTTAACTATTTGGTTCTTCCGTGGTGTTAGGGGTCTATAACCTCAAATTCAAAGGTCTA
AGAGGTTTAGGGAGTAAGGTAGGAGGAGCCGAGGTATAATACCCACATGTTTTGACCGGAACTTC
TTTCAATATGAAAAAGGTCGTAGAATGGCCAACCCATGAGCCCCACCATTCGGATCATCCCAAGC
AGTTGCCGTATAAGTGCGCGCATGATTTCCCGTAGCAGTAGCAGC
Right flanking sequence: Indices 47063 -- 47562
TCATCCCGTACGGACATCTTCTCGTGACCGATGCAAATGCTAATCCCTTTCAATAGTACCTCACT
TGAAGCACGGGCAATCCCATCTCTCTAACTCGTGTACCATTCTGCCAAGGCTTAAGGCTCCTTCC
TCTTAACCTGTCAAGTTTATATGAATATAAGACACCCCGTGGGTTAGGAGAAACAAACCCCAATG
CTAGTAATTTGAACATATGAAAGCAAGAAATCTCCTTTCCCCTTAGACCCCTGCCAGCCTATCCT
TTTTGTTCCGGGATTAACGGGACCATTCCATATTTCCAAGATGTTGATGATCTCATATATACACC
CGGAGGGACTTTACCGAGATACAAGGGGAAGGTTTGATGAATCTGGTCGAACAAGACTTTGTGCC
TGCTCCCAACGTGCTTAAGATGCCGCCGTGGATCTATCCACTCGAATAAGGCTTAGTTGTGTTCC
ACATAAAGTGAATCTCTCTAATCAGTAGCTTGCTAAGCGGTCTAC
Found at i:47785 original size:1 final size:1
Alignment explanation
Indices: 47779--47811 Score: 66
Period size: 1 Copynumber: 33.0 Consensus size: 1
47769 AAGGCATACA
47779 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
47812 ATTGAACTGA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 32 1.00
ACGTcount: A:0.00, C:0.00, G:1.00, T:0.00
Consensus pattern (1 bp):
G
Left flanking sequence: Indices 47279 -- 47778
AGCAAGAAATCTCCTTTCCCCTTAGACCCCTGCCAGCCTATCCTTTTTGTTCCGGGATTAACGGG
ACCATTCCATATTTCCAAGATGTTGATGATCTCATATATACACCCGGAGGGACTTTACCGAGATA
CAAGGGGAAGGTTTGATGAATCTGGTCGAACAAGACTTTGTGCCTGCTCCCAACGTGCTTAAGAT
GCCGCCGTGGATCTATCCACTCGAATAAGGCTTAGTTGTGTTCCACATAAAGTGAATCTCTCTAA
TCAGTAGCTTGCTAAGCGGTCTACCCAAGAAGACGTATTGTGTGTTGTGTCCGTTAGAGCGCCAT
ATCGAATATGGCAGGTGCGGCTTTAACTGAATGCGGATTGAAAGCGTCCAGAAAGCGTACTGCAT
ATGAAACTGAAAGCGGGTAATGGCGGGATGCGGATTGAACTGAATGGGGTAATGTGTGGATACAG
GGATGTGTAAATGTGGGATTCGGGCCGTATTGGGGAAGGCATACA
Right flanking sequence: Indices 47812 -- 48311
ATTGAACTGAATGGGGTAATGTGTGGATACAGGGATGTGTAAATGTGGGATTCGGGCCGTATTGG
GGAAGGCATACAGGGGAATCTGGGGAACGTCTTTCTTGTAAGATGGGTTAGTGCTTGGTGGGAAC
GCCTTTCTTGTAAGACTCCTCAGTTTAGAGAATCAAATCGAATCTTGAAACTTTTTGATCCAGAA
TACTACTTCAAATTGAATCAATGCCTCTATGTCTGCCTTATCTCTTCATTCGCTCAGGGCGTCAT
ATCCATGACCATCGCTTGCAGCTCTCTCTTCCCTTTCATTTGAGGGGGCTGGCATTCTCATCAAT
CCATCCATCAATCCATCCCTCGATCAATCAATCTCATCTGGCTGGCTGAATCAATCCCTTCATCA
ATGCTTCCCTCAATCAATCACTCCCTCGATCACTCAATGCCTCAATCGCTGAATCACTCGCATGA
AGGCTGGCACTCATAATAAACCAATTCTGGCTGTCTTACTGGCTT
Found at i:48147 original size:12 final size:12
Alignment explanation
Indices: 48130--48154 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
48120 CTGGCATTCT
48130 CATCAATCCATC
1 CATCAATCCATC
48142 CATCAATCCATC
1 CATCAATCCATC
48154 C
1 C
48155 CTCGATCAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.44, G:0.00, T:0.24
Consensus pattern (12 bp):
CATCAATCCATC
Left flanking sequence: Indices 47630 -- 48129
CTGAATGCGGATTGAAAGCGTCCAGAAAGCGTACTGCATATGAAACTGAAAGCGGGTAATGGCGG
GATGCGGATTGAACTGAATGGGGTAATGTGTGGATACAGGGATGTGTAAATGTGGGATTCGGGCC
GTATTGGGGAAGGCATACAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGATTGAACTGAATG
GGGTAATGTGTGGATACAGGGATGTGTAAATGTGGGATTCGGGCCGTATTGGGGAAGGCATACAG
GGGAATCTGGGGAACGTCTTTCTTGTAAGATGGGTTAGTGCTTGGTGGGAACGCCTTTCTTGTAA
GACTCCTCAGTTTAGAGAATCAAATCGAATCTTGAAACTTTTTGATCCAGAATACTACTTCAAAT
TGAATCAATGCCTCTATGTCTGCCTTATCTCTTCATTCGCTCAGGGCGTCATATCCATGACCATC
GCTTGCAGCTCTCTCTTCCCTTTCATTTGAGGGGGCTGGCATTCT
Right flanking sequence: Indices 48155 -- 48654
CTCGATCAATCAATCTCATCTGGCTGGCTGAATCAATCCCTTCATCAATGCTTCCCTCAATCAAT
CACTCCCTCGATCACTCAATGCCTCAATCGCTGAATCACTCGCATGAAGGCTGGCACTCATAATA
AACCAATTCTGGCTGTCTTACTGGCTTTCTCAATCTCCATCTGGCTGGGCTTACTCACTCAATCA
ATCCGTTCTTTAAGGCTGACTCGATTGCATTCTTTAAGGCTTTCTCAATCACCGGCTTATCAATC
TCAATTGCATTCTTGCTGGGCCCCAGACATTAGGCTGAATCAATCACATTCAGCAGTCTGGTGGC
ATGAATAATCTCATCTGGCTGGGCTTACTCAATCGCTTCATCAATAGCTGTTGTTGCTGGATCAA
TCGCTGTCTCAATCCGTTCATATCATCTTCATCTGGCTTTCATTCAGTCAGAATCAATCGTTCAA
TCAATCTCATCTGGCATTAAGGCTTACTCATCGATCAATCCTTCT
Found at i:48226 original size:16 final size:16
Alignment explanation
Indices: 48185--48248 Score: 51
Period size: 16 Copynumber: 4.0 Consensus size: 16
48175 TGGCTGGCTG
48185 AATCAATCCCTTC-ATC
1 AATCAATCCC-TCAATC
*
48201 AATGC-TTCCCTCAATC
1 AAT-CAATCCCTCAATC
* *
48217 AATCACTCCCTCGATC
1 AATCAATCCCTCAATC
* *
48233 ACTCAATGCCTCAATC
1 AATCAATCCCTCAATC
48249 GCTGAATCAC
Statistics
Matches: 38, Mismatches: 7, Indels: 6
0.75 0.14 0.12
Matches are distributed among these distances:
15 3 0.08
16 34 0.89
17 1 0.03
ACGTcount: A:0.28, C:0.39, G:0.05, T:0.28
Consensus pattern (16 bp):
AATCAATCCCTCAATC
Left flanking sequence: Indices 47685 -- 48184
GTAATGGCGGGATGCGGATTGAACTGAATGGGGTAATGTGTGGATACAGGGATGTGTAAATGTGG
GATTCGGGCCGTATTGGGGAAGGCATACAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGATT
GAACTGAATGGGGTAATGTGTGGATACAGGGATGTGTAAATGTGGGATTCGGGCCGTATTGGGGA
AGGCATACAGGGGAATCTGGGGAACGTCTTTCTTGTAAGATGGGTTAGTGCTTGGTGGGAACGCC
TTTCTTGTAAGACTCCTCAGTTTAGAGAATCAAATCGAATCTTGAAACTTTTTGATCCAGAATAC
TACTTCAAATTGAATCAATGCCTCTATGTCTGCCTTATCTCTTCATTCGCTCAGGGCGTCATATC
CATGACCATCGCTTGCAGCTCTCTCTTCCCTTTCATTTGAGGGGGCTGGCATTCTCATCAATCCA
TCCATCAATCCATCCCTCGATCAATCAATCTCATCTGGCTGGCTG
Right flanking sequence: Indices 48249 -- 48748
GCTGAATCACTCGCATGAAGGCTGGCACTCATAATAAACCAATTCTGGCTGTCTTACTGGCTTTC
TCAATCTCCATCTGGCTGGGCTTACTCACTCAATCAATCCGTTCTTTAAGGCTGACTCGATTGCA
TTCTTTAAGGCTTTCTCAATCACCGGCTTATCAATCTCAATTGCATTCTTGCTGGGCCCCAGACA
TTAGGCTGAATCAATCACATTCAGCAGTCTGGTGGCATGAATAATCTCATCTGGCTGGGCTTACT
CAATCGCTTCATCAATAGCTGTTGTTGCTGGATCAATCGCTGTCTCAATCCGTTCATATCATCTT
CATCTGGCTTTCATTCAGTCAGAATCAATCGTTCAATCAATCTCATCTGGCATTAAGGCTTACTC
ATCGATCAATCCTTCTTTATGGGCGACTTATATAAGTAATTACGCTTTAGCATCGCGTATGGGAT
CTCCGCTCAAATCATCGATCGTAAATTGACTAGAGGGAAAGGAAC
Found at i:52195 original size:21 final size:21
Alignment explanation
Indices: 52171--52211 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
52161 GAAGTAAGGG
52171 CCCTCTCCTTGACAGTCGAGC
1 CCCTCTCCTTGACAGTCGAGC
52192 CCCTCTCCTTGACAGTCGAG
1 CCCTCTCCTTGACAGTCGAG
52212 TGTGCTTACG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.15, C:0.41, G:0.20, T:0.24
Consensus pattern (21 bp):
CCCTCTCCTTGACAGTCGAGC
Left flanking sequence: Indices 51671 -- 52170
ACATGATTCATCGTGACTCATGTCAGCATTCTCACTTCTGATATCCCCTCAATTTGTTCGGGAAG
GATTGGTTGGCGCCTCGATGGCGGCGCCATATGAATAGTGAGTCCATACCGGACCTATGCTCGGG
TCTTCGCCGAATAGGATGCGTAAGCAGGCTCGACTGTTAGGGTTTACTTATTGGGTGGGGCAATA
AGTAAACCCTAACCGGCAGGGTGAGCCTGTCGAACTCTCGACCTATGGGAGAGGGGCTCGACCAT
AAGCCCCCCCACCCAATAAGTCAAATGAATTTCTTTCCCATAGATCTCGATTGAAACCGATGGCG
GCCAGTCGAGTGTGCTAACGCACCCTCACCATATGAATAGTGAGTGACCCCTAAGAAGTAAGGGC
CCTCTATTTTTGGAAAATAGAGCTTCCAAATCGATGGCGGCCTTAGCAGTCGAGCCCCTCCGGTC
CTCACCCATCGGAATGAGTGAGTGACCCCTATGAAGAAGTAAGGG
Right flanking sequence: Indices 52212 -- 52711
TGTGCTTACGCACCCTGCCGGTCCTCACCATCGGAATAGTGAGTGACCCCTCACCATATGAATAG
TGAGTGTGCTAACGCACCCTCTCCCCTCCTCTCAAATAAGTAACCAAAGGCAGTCGAGTGTGCTT
ACGCACCCTCACCATATGAATAGTGAGTGTGCTAACGCACCCTCTCCCCTCCTCTCAAATAAGTA
ACCAAAGGCAGTCGAGTGTGCTTACGCACCCTCACCATATGAATAGTGAGTGGCTCCGCCCCTAA
GTAATAAATATAGGGCCCTGAAACTGGCAAGCAGTCGATCGTACTCTTTTCACATGATCCTAATA
TAGATTCTATTGGGTGACTCACCATATAGATTCTAATTAGAACTCCCCCCTCCGTAGCAAGTATA
TTGCGCTATTTGTCCATATTATATACGTTAGATCATGCGACACACATCCCTTCTTTCAGCCATGC
TAATTCATGCGACTATGTCATATATATGATTGGGAAATGAAAGCA
Found at i:52408 original size:88 final size:88
Alignment explanation
Indices: 52259--52458 Score: 400
Period size: 88 Copynumber: 2.3 Consensus size: 88
52249 AGTGAGTGAC
52259 CCCTCACCATATGAATAGTGAGTGTGCTAACGCACCCTCTCCCCTCCTCTCAAATAAGTAACCAA
1 CCCTCACCATATGAATAGTGAGTGTGCTAACGCACCCTCTCCCCTCCTCTCAAATAAGTAACCAA
52324 AGGCAGTCGAGTGTGCTTACGCA
66 AGGCAGTCGAGTGTGCTTACGCA
52347 CCCTCACCATATGAATAGTGAGTGTGCTAACGCACCCTCTCCCCTCCTCTCAAATAAGTAACCAA
1 CCCTCACCATATGAATAGTGAGTGTGCTAACGCACCCTCTCCCCTCCTCTCAAATAAGTAACCAA
52412 AGGCAGTCGAGTGTGCTTACGCA
66 AGGCAGTCGAGTGTGCTTACGCA
52435 CCCTCACCATATGAATAGTGAGTG
1 CCCTCACCATATGAATAGTGAGTG
52459 GCTCCGCCCC
Statistics
Matches: 112, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
88 112 1.00
ACGTcount: A:0.28, C:0.31, G:0.18, T:0.23
Consensus pattern (88 bp):
CCCTCACCATATGAATAGTGAGTGTGCTAACGCACCCTCTCCCCTCCTCTCAAATAAGTAACCAA
AGGCAGTCGAGTGTGCTTACGCA
Left flanking sequence: Indices 51759 -- 52258
GCGCCATATGAATAGTGAGTCCATACCGGACCTATGCTCGGGTCTTCGCCGAATAGGATGCGTAA
GCAGGCTCGACTGTTAGGGTTTACTTATTGGGTGGGGCAATAAGTAAACCCTAACCGGCAGGGTG
AGCCTGTCGAACTCTCGACCTATGGGAGAGGGGCTCGACCATAAGCCCCCCCACCCAATAAGTCA
AATGAATTTCTTTCCCATAGATCTCGATTGAAACCGATGGCGGCCAGTCGAGTGTGCTAACGCAC
CCTCACCATATGAATAGTGAGTGACCCCTAAGAAGTAAGGGCCCTCTATTTTTGGAAAATAGAGC
TTCCAAATCGATGGCGGCCTTAGCAGTCGAGCCCCTCCGGTCCTCACCCATCGGAATGAGTGAGT
GACCCCTATGAAGAAGTAAGGGCCCTCTCCTTGACAGTCGAGCCCCTCTCCTTGACAGTCGAGTG
TGCTTACGCACCCTGCCGGTCCTCACCATCGGAATAGTGAGTGAC
Right flanking sequence: Indices 52459 -- 52958
GCTCCGCCCCTAAGTAATAAATATAGGGCCCTGAAACTGGCAAGCAGTCGATCGTACTCTTTTCA
CATGATCCTAATATAGATTCTATTGGGTGACTCACCATATAGATTCTAATTAGAACTCCCCCCTC
CGTAGCAAGTATATTGCGCTATTTGTCCATATTATATACGTTAGATCATGCGACACACATCCCTT
CTTTCAGCCATGCTAATTCATGCGACTATGTCATATATATGATTGGGAAATGAAAGCAAATATTT
CCTTCCTTCCACTAGTGAGGAATATCTATTTGGGGACAGGCCAATACGGGCTGGGGTTTGGGGGT
ATGCCCCCATTTTGCGGGGATTTCTCCCCTTCCGTTGGTTTTTTCGTTGGGTGTTGTTCCCACTT
GCTAAAGTCTCATTTCCATCTCACATCCTACCCCAAAAACGGTTAGCTCGCCTCTGGTTATTAAG
GTTCCTTTTCTGGGGAGGGCTAACAATCTTTTTCTCTGCCACGGG
Found at i:56985 original size:14 final size:14
Alignment explanation
Indices: 56966--56997 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
56956 GGCACTCGTC
56966 AAATAGAAATGTAT
1 AAATAGAAATGTAT
56980 AAATAGAAATGTAT
1 AAATAGAAATGTAT
56994 AAAT
1 AAAT
56998 CAATAGCAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.59, C:0.00, G:0.12, T:0.28
Consensus pattern (14 bp):
AAATAGAAATGTAT
Left flanking sequence: Indices 56466 -- 56965
GCTCAAACCCCCGCTAAGGTCGATAAGGCCGATTATGATTCAAAGTGGGTAAACAAGGGTTGTCA
AAAGTGTGTTATCCGCTAAGGTGATAGGCAAAAAGAAGAAGTCAAACTTCAAGAACTTCCGATAA
GGTCGATTATGATTCAAAAGTGGGTAACCAAACCAAGGGTTGTCACAAGTGTTTTCTCCGCTAGG
GGGATAAGCCAAAATCAGAGGGGAATGACAAATAACTTCCGCTAAGGTGCTTCTTTCAACAAACT
CAGAATCCGGATATGGCTAAAGGTCATGCTCATACTATAGTAAGGAATAAAGCATTATATCGATA
ACCTGGCTTTGTTCTATTCGTCCGGTTTCAGTGCCTCGCCTTTGCCTTTTGCTATGGATCTCCAT
CTCGACCTAGGACCCCTAAATCTAATGCTGCGGGGATGCGGGTAATTCCCCTGTTCTTGGCATTG
GATCATAAATTGGTGGATCAGCAGCTTCAGCTATGGGCACTCGTC
Right flanking sequence: Indices 56998 -- 57497
CAATAGCAATCGCAAAAGCCTACTCTTATAACCTGGCATATGATATGGTAATGTATTCTACATGA
AGCTACTAGCCGGGTACTGGAAAATACTGCTCGGTGAACCTAGCGTAGAAGAGATGGTAGATTCT
CCTTCATGAAGCTCGCGTAGATATGGGAGGTACCTAGTTTTGACATTCCCTTTTGTTCAACCTAG
TCCGGGTAGCCCGGCTTATACGCTGCAAGTTCCAGTCCCAGATTGATTATGGCTGTTGTATGCAC
TCGTTAAGGCAAAAGGTGTTCTCCTTCCGGGAAGAGATAACCTGTCAAATGGGCTCCCCATAATA
ATGTGAATCTTAGTAGGCCAATGTATAGAGTCATTGGTAGGATCCCTAAAAACCACAGTAGTATT
CTAGACCCCCCCAGTGAGCCACCGTTGTTAAGGCCGCCCCCCCTGGGTTGAGTGTACCTTTGGAT
AGCCCCTTAATCCTTAGCTGTGTAGACCCGATCTATAGTTGCAAG
Found at i:58389 original size:21 final size:21
Alignment explanation
Indices: 58363--58403 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
58353 GCATCCACCT
58363 CCTCTCCTTATCAGTCGAGCC
1 CCTCTCCTTATCAGTCGAGCC
*
58384 CCTCTCCTTATTAGTCGAGC
1 CCTCTCCTTATCAGTCGAGC
58404 GTGCTACGCA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.15, C:0.39, G:0.15, T:0.32
Consensus pattern (21 bp):
CCTCTCCTTATCAGTCGAGCC
Left flanking sequence: Indices 57863 -- 58362
ACCAAAGCCACTAGAGTGAGAGAATTTGATTGTGCCTCCCTCTATGTTCCATAAGCAATCCTTCC
AGTGATGTTCAATTGTTGTGCTATCCCCCTCCGCCCCTAAAGATGGGAGATTTATTTAGCCCCTT
TTCTCGATCGCTTGGTTCCATTGGAGAAATCCAACTTAGGGTTAGTCCCATTATCCAATCCCAGT
TATTTATCCATTTGAACCAATTGATCCAGATCTCACAGAGGCAAAGACCCTAGCTTCTTCCTGGG
TACTCTATTACTAATGGAAAGACTTTCTCTTATGTCTGCTAAAGTTGTCTTGTTGAACTTCAGCT
CGCCTCTGCTTAGTTGGTGCCTTGAACTTCATCTCTTCCTTGGTGACAATGGCACCAGGAGGCCT
ATAGAAAGTGTAATATAGTGGTAAGCTGGAGCTCTGAGGTTGAGGCACTTTAACTAATTGCTCTT
CAGTCCTTGATGAGCCACCCTCCCTTGTCAAAATGGCATCCACCT
Right flanking sequence: Indices 58404 -- 58903
GTGCTACGCACCCTGACGGACCTCGTAGCTCTCTTTGTTTGCCAGCTTCTCCTCCCCCGGTCTAG
TCTCGTGATCTTGAGGATCAGGTACTTTTAGTCTTTTCTCAGTGCCTATAAGGAAGTAAGGGTCA
TACTTCCAAGGAGAATCCAAAGGAAGATCTAGACTTTTGAGTAGTTCCAGGGCTTCTTTAATGCC
CCTCTTCTCATTAATAGCATAGCCCCCCATGACCACAAGGAAAGTCATCCTGCCCTTCTTCTTAG
ATTTGGTGAAATGCAAATTATCTATCTCTACCATCAGCCTGACATACTCCAACATGAATACCCTT
GGGGTGAGTAGCCTGGGTAATCTGTAAGGAGCCTATTGGGTTCCATATAGCCTTATCACAGTGAA
ATCAGGCCCTAGGAACCAATCTCCTCTCTTGAGGGCCTCTCCTAACTGTAGATAGGGCTTAATTT
CTGCTGGCATCTACTGGGGGGACTGGTTGTCAATTATGGTGTAAG
Found at i:61030 original size:14 final size:14
Alignment explanation
Indices: 61011--61047 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
61001 ACCAAGTCAT
61011 CCTCCTACTATCGC
1 CCTCCTACTATCGC
61025 CCTCCTACTATCGC
1 CCTCCTACTATCGC
*
61039 CCTACTACT
1 CCTCCTACT
61048 CACGCTCTAC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.16, C:0.49, G:0.05, T:0.30
Consensus pattern (14 bp):
CCTCCTACTATCGC
Left flanking sequence: Indices 60511 -- 61010
TACCAAGCGTCGAATGCGGAAGTTTCGATCAAGATATTCGAGGGAGGGTGGGTGGAGAGACGAAA
GCTTGGCTGCTTTACCCCACTCATTTCAATAAGGGAAGGGGTTCGGTTCGAATCCGGACGTATCT
GTTATGTATAAAGGTTCCTAGGGGCATATGTCATTATGCTTTTCTGCCATTTCGATTTCTTCCCC
TCAATTCAAAATGAGAGGGTTTATCAGGACCTTGAATAAGGGGGGCCTGACTCTTCAAGTAGCTT
CGCCTATAACGTTACAGGGCCTTGCGCTGACCAAAGCAGAAAATGCTGCTATTATAACAGTAATT
ACGCTTTCTTTGCTTTCTTTGGGGGGGTTTATCTATTGCTCAAGGCTGCCTCTAGTTACTTCAAT
TATACGAGTCGATATAAGGAAGCAACACTTCGTCAAGTGATCTATATATCTAGGGAAAGAAACAG
CTAGTTAACCCTCCACAAGGATAGAGTAGTACTCAACCAAGTCAT
Right flanking sequence: Indices 61048 -- 61547
CACGCTCTACTACTCACGCCCTACAACCATACCTCCAGTTCAAGCCCAGTGGACCCCCATCAGTA
AGGGAGGGTACATTCTATCCACCGCACAGGAACGATTGACTCGGCCCAGGGGCCAACGACTAGAG
TCTAGTCCTATCCTTACAACCCCCTATCCTTCCCACTTTATATCCCTCGCCCAGGAACGATTGCC
TCAGCCCCAGTGGGGGAGCTGGACAACCACCGCTTATTCCCAACTATAGAAAGTTCCCTGATTCC
GAAGAAACAGCAACAGGATATCGGATCTTTTATAGAGCGGGATTCTACCATCATTTTGATTTCGG
GGTGATTCTATCTATTTCTTCCTAGTCCTAGTTGATCTATTTCTAGTATTAGTTGTGTTGGTTTA
TGGATGGCACGAAATAGCTTCTATGATGCGCAGTCAATGGTTGGGGCGGCAGTATTGAACGATTC
TTCATATTTGGCGGAGAGATAGATCTGAGCTTTGTACGGCGGCAT
Found at i:61057 original size:14 final size:14
Alignment explanation
Indices: 61022--61071 Score: 66
Period size: 14 Copynumber: 3.6 Consensus size: 14
61012 CTCCTACTAT
*
61022 CGCCCTCCTACT-A
1 CGCCCTACTACTCA
61035 TCGCCCTACTACTCA
1 -CGCCCTACTACTCA
*
61050 CGCTCTACTACTCA
1 CGCCCTACTACTCA
61064 CGCCCTAC
1 CGCCCTAC
61072 AACCATACCT
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
14 31 0.97
15 1 0.03
ACGTcount: A:0.18, C:0.50, G:0.08, T:0.24
Consensus pattern (14 bp):
CGCCCTACTACTCA
Left flanking sequence: Indices 60522 -- 61021
GAATGCGGAAGTTTCGATCAAGATATTCGAGGGAGGGTGGGTGGAGAGACGAAAGCTTGGCTGCT
TTACCCCACTCATTTCAATAAGGGAAGGGGTTCGGTTCGAATCCGGACGTATCTGTTATGTATAA
AGGTTCCTAGGGGCATATGTCATTATGCTTTTCTGCCATTTCGATTTCTTCCCCTCAATTCAAAA
TGAGAGGGTTTATCAGGACCTTGAATAAGGGGGGCCTGACTCTTCAAGTAGCTTCGCCTATAACG
TTACAGGGCCTTGCGCTGACCAAAGCAGAAAATGCTGCTATTATAACAGTAATTACGCTTTCTTT
GCTTTCTTTGGGGGGGTTTATCTATTGCTCAAGGCTGCCTCTAGTTACTTCAATTATACGAGTCG
ATATAAGGAAGCAACACTTCGTCAAGTGATCTATATATCTAGGGAAAGAAACAGCTAGTTAACCC
TCCACAAGGATAGAGTAGTACTCAACCAAGTCATCCTCCTACTAT
Right flanking sequence: Indices 61072 -- 61571
AACCATACCTCCAGTTCAAGCCCAGTGGACCCCCATCAGTAAGGGAGGGTACATTCTATCCACCG
CACAGGAACGATTGACTCGGCCCAGGGGCCAACGACTAGAGTCTAGTCCTATCCTTACAACCCCC
TATCCTTCCCACTTTATATCCCTCGCCCAGGAACGATTGCCTCAGCCCCAGTGGGGGAGCTGGAC
AACCACCGCTTATTCCCAACTATAGAAAGTTCCCTGATTCCGAAGAAACAGCAACAGGATATCGG
ATCTTTTATAGAGCGGGATTCTACCATCATTTTGATTTCGGGGTGATTCTATCTATTTCTTCCTA
GTCCTAGTTGATCTATTTCTAGTATTAGTTGTGTTGGTTTATGGATGGCACGAAATAGCTTCTAT
GATGCGCAGTCAATGGTTGGGGCGGCAGTATTGAACGATTCTTCATATTTGGCGGAGAGATAGAT
CTGAGCTTTGTACGGCGGCATGGCTCTGGACGGCCCGCATAGTTG
Found at i:61621 original size:15 final size:15
Alignment explanation
Indices: 61601--61631 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
61591 ATTGGGAATG
61601 GATGAATCAGCGATT
1 GATGAATCAGCGATT
61616 GATGAATCAGCGATT
1 GATGAATCAGCGATT
61631 G
1 G
61632 TCATTGCATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.32, C:0.13, G:0.29, T:0.26
Consensus pattern (15 bp):
GATGAATCAGCGATT
Left flanking sequence: Indices 61101 -- 61600
CCCCCATCAGTAAGGGAGGGTACATTCTATCCACCGCACAGGAACGATTGACTCGGCCCAGGGGC
CAACGACTAGAGTCTAGTCCTATCCTTACAACCCCCTATCCTTCCCACTTTATATCCCTCGCCCA
GGAACGATTGCCTCAGCCCCAGTGGGGGAGCTGGACAACCACCGCTTATTCCCAACTATAGAAAG
TTCCCTGATTCCGAAGAAACAGCAACAGGATATCGGATCTTTTATAGAGCGGGATTCTACCATCA
TTTTGATTTCGGGGTGATTCTATCTATTTCTTCCTAGTCCTAGTTGATCTATTTCTAGTATTAGT
TGTGTTGGTTTATGGATGGCACGAAATAGCTTCTATGATGCGCAGTCAATGGTTGGGGCGGCAGT
ATTGAACGATTCTTCATATTTGGCGGAGAGATAGATCTGAGCTTTGTACGGCGGCATGGCTCTGG
ACGGCCCGCATAGTTGGGGCTTTAGCGCGTGGCGGATTGGGAATG
Right flanking sequence: Indices 61632 -- 62131
TCATTGCATTAGTGGATTTGGATTATGGCTTCGCTGGTTTGGCTGGGCGCGTTGCCGGGTGCGTT
GACCACTCACTATACACTACCACTAACCCTTGATGACTATAAACTATCAACGGAGGGGAATCACT
TCCACTACCAGTTATATAGAGTAGAGACATCTAGCTAGGGATTGATACAACGAATGAGAGATATA
ACAGCTACTAATGAACGAATGAGAGTGAGATACACCTACTACCAGTGATAAGACATATACTACCG
AGGGAATTATATCACATCTATGCTCTGTACACTAACGTGATACATCTATGCAATCAACTACACAT
AGGGGGATACCCTGAATAGATTCTATTGGCCGAGAATGAAGTAGGCTCGAATACTATATGCCGGG
AATTCTCATTCACTCGACTGCATATCTATTGGCTGGCCGCCATCGTCGGAAGACACAGGGATAAA
TCTTATTTGTTCATTCTTCCCTTGCTAGATGGTGGGCAGGTGTTC
Found at i:65260 original size:37 final size:37
Alignment explanation
Indices: 65218--65290 Score: 96
Period size: 37 Copynumber: 2.0 Consensus size: 37
65208 GGCAGAGAGT
*
65218 AAACGAGATTTCC-CAGGACTC-ATGGAGCAAGTTACCA
1 AAACGAGA-TTCCAC-GGACTCAAGGGAGCAAGTTACCA
*
65255 AAACGATATTCCACGGACTCAAGGGAGCAAGTTACC
1 AAACGAGATTCCACGGACTCAAGGGAGCAAGTTACC
65291 GATGCATATC
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
36 10 0.31
37 22 0.69
ACGTcount: A:0.36, C:0.25, G:0.22, T:0.18
Consensus pattern (37 bp):
AAACGAGATTCCACGGACTCAAGGGAGCAAGTTACCA
Left flanking sequence: Indices 64718 -- 65217
TTGGTTTGTAGCATATATGGCCCTATTGTGTTTGGTATATGTTTTCATGTGATAAAACAATTCCT
CCGGCAAGGGTTATCGATAAATAACCATGAGCGTTAGCGATTCACGGGGTAGGGGGAAGCTTTTG
GTCTTTCTTTCTCTCTTTGGATCATTCGCCAACAAGGAGGCAAGCGGCAAGTGTATCAAACCGAT
ATCCCAAGTACTCTAAGGCAGAAAACGATATCCAAGGCCTGAAGCAGCAAGTGTATCAAACCTAA
ATTCCAGTCCTAATGGAGCAAGTAACCAACCGGATTTGCTACGTACTCATTCCTTCTTGCTGGGT
GTCCAAACGGATATGCCAGGAGTCATGCTGGATGGTGTACCGATGCCTATGCCAGTCCTAATGGA
GCAAGTAACCAAGGGATATGCACCGGCCTCAAGCTGGATGTGTCGAAACGATTTGCAAGGCCTCA
AGGCAGAAAGTAAACGCTATCCAACAAAGACTCAAGGCAGAGAGT
Right flanking sequence: Indices 65291 -- 65790
GATGCATATCCCAAAGACTCAAGCGAGTTACCAATGTTCCCAGGCCTCATCAAGCAGAAAGTGTA
CGAACGATTTGGAAGGAGTCATGCTGGAAGTGTATCAAAACGATTTCCGAGGACTCAAGCGGCAA
GTATCAAAACGATATCCCACGGACTCAAGGCAGCAAGTGAATAATCCATATCCCACGTACTAATG
CTGGAAGTATCAGAATGATGTTCCCAGGACTCAAGCAAGTGTACCAACAACGCTTCCCACGTACT
AATGCTGGAAGTTACGGATGCATATCCTCCCACGGACTCAAGCTGAGAAGTGTTTCTTGTCTTTT
CTTCGCCAACATACTGCTCCACCAGGTGCTCATGTTCCATGCAACGGATAAGTTTTTTATTGCTC
ATGTTCCTTCCTTCAACGTATAGGTGCTGATTCATTTTCCTTCAACGGCATGCTGCTCAACGGAT
CATGTTCCATGCACGTATCCCGGACAAACTGACTAGCGATCTAAC
Found at i:65428 original size:34 final size:36
Alignment explanation
Indices: 65387--65458 Score: 103
Period size: 34 Copynumber: 2.1 Consensus size: 36
65377 TGCTGGAAGT
* * *
65387 GTATCAAAACGATTTCCGA-GGACTCAA-GCGGCAA
1 GTATCAAAACGATATCCCACGGACTCAAGGCAGCAA
65421 GTATCAAAACGATATCCCACGGACTCAAGGCAGCAA
1 GTATCAAAACGATATCCCACGGACTCAAGGCAGCAA
65457 GT
1 GT
65459 GAATAATCCA
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
34 17 0.52
35 8 0.24
36 8 0.24
ACGTcount: A:0.36, C:0.25, G:0.22, T:0.17
Consensus pattern (36 bp):
GTATCAAAACGATATCCCACGGACTCAAGGCAGCAA
Left flanking sequence: Indices 64887 -- 65386
GCAAGCGGCAAGTGTATCAAACCGATATCCCAAGTACTCTAAGGCAGAAAACGATATCCAAGGCC
TGAAGCAGCAAGTGTATCAAACCTAAATTCCAGTCCTAATGGAGCAAGTAACCAACCGGATTTGC
TACGTACTCATTCCTTCTTGCTGGGTGTCCAAACGGATATGCCAGGAGTCATGCTGGATGGTGTA
CCGATGCCTATGCCAGTCCTAATGGAGCAAGTAACCAAGGGATATGCACCGGCCTCAAGCTGGAT
GTGTCGAAACGATTTGCAAGGCCTCAAGGCAGAAAGTAAACGCTATCCAACAAAGACTCAAGGCA
GAGAGTAAACGAGATTTCCCAGGACTCATGGAGCAAGTTACCAAAACGATATTCCACGGACTCAA
GGGAGCAAGTTACCGATGCATATCCCAAAGACTCAAGCGAGTTACCAATGTTCCCAGGCCTCATC
AAGCAGAAAGTGTACGAACGATTTGGAAGGAGTCATGCTGGAAGT
Right flanking sequence: Indices 65459 -- 65958
GAATAATCCATATCCCACGTACTAATGCTGGAAGTATCAGAATGATGTTCCCAGGACTCAAGCAA
GTGTACCAACAACGCTTCCCACGTACTAATGCTGGAAGTTACGGATGCATATCCTCCCACGGACT
CAAGCTGAGAAGTGTTTCTTGTCTTTTCTTCGCCAACATACTGCTCCACCAGGTGCTCATGTTCC
ATGCAACGGATAAGTTTTTTATTGCTCATGTTCCTTCCTTCAACGTATAGGTGCTGATTCATTTT
CCTTCAACGGCATGCTGCTCAACGGATCATGTTCCATGCACGTATCCCGGACAAACTGACTAGCG
ATCTAACTCCCCTCAATTGTTGATATCGTTCCTCAAAAGCTCAACCGGTAAGCACCAATTTCATT
CCATTATTGGTAACAAATCCCTAATGCGGACCACATACTTCATCTGTTTCCTCGTCTATGCGGCA
GCTTCCCTTCCTGTGTGGTTCCTTTGGTGGAGCGGTATTGGTCTA
Found at i:66197 original size:25 final size:25
Alignment explanation
Indices: 66163--66225 Score: 90
Period size: 25 Copynumber: 2.5 Consensus size: 25
66153 GAAGTTTTGT
66163 AATGAGTATTGGTTCCAGAAAGCTG
1 AATGAGTATTGGTTCCAGAAAGCTG
* * *
66188 AATGAGTATTGTTTCCTGAAGGCTG
1 AATGAGTATTGGTTCCAGAAAGCTG
*
66213 AATGTGTATTGGT
1 AATGAGTATTGGT
66226 GGGGATTGTT
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 33 1.00
ACGTcount: A:0.27, C:0.10, G:0.29, T:0.35
Consensus pattern (25 bp):
AATGAGTATTGGTTCCAGAAAGCTG
Left flanking sequence: Indices 65663 -- 66162
ATAAGTTTTTTATTGCTCATGTTCCTTCCTTCAACGTATAGGTGCTGATTCATTTTCCTTCAACG
GCATGCTGCTCAACGGATCATGTTCCATGCACGTATCCCGGACAAACTGACTAGCGATCTAACTC
CCCTCAATTGTTGATATCGTTCCTCAAAAGCTCAACCGGTAAGCACCAATTTCATTCCATTATTG
GTAACAAATCCCTAATGCGGACCACATACTTCATCTGTTTCCTCGTCTATGCGGCAGCTTCCCTT
CCTGTGTGGTTCCTTTGGTGGAGCGGTATTGGTCTAATCATGGGTGCAAGCGGTAGCGATCAATC
AAAATAGCGGTAGCGATCAATCAATGCAATCAATCAGTGTCCGGGGCCAATCGCAACAATGATTC
GTCCGTCCGTTGACCCGCCTAACCTCACAATATGTTTTTTGATTTTCTTTTGTCCGTTTGAACGC
CTCACCCCGAACAATGTCTATGGGTATTGTTTCCTGAAGTTTTGT
Right flanking sequence: Indices 66226 -- 66725
GGGGATTGTTTGCATAAAGCGTAATGGGGGGAATGAACTGAAAGCATACATGACGTTGTGTCCAG
ACCTCTTCAAGTGTAAAGACCTCTGTCCAGGCCTATATTGTAAAGGCCTATATTGTTCCCATAAA
GCGTAATGTTTGGATGAACTGAAAGCGTAATGGGCCATCCATATCCTTCCTTCCTTCCTATGTGA
TGTGGGGCCTTGGCAGGTGGCGGTGGGCTGTCTGTGATTCGTCCTCCGTTGTACCGGCTAACCTC
AAACAAAGTGATCCCTCCTTAATCAAATTGATTCTGCGCGATTATAGAGAAAGTTTATGAAAAGC
CAAATTTGAGTAATCAAAGTTTAGTTTAGTGCCTCGGATGACTCACTCAAGTGTGGATCCCTAAA
AAGGTATATTTATTTGAATAAGAATGTTGAATTAGAAGGTTTTTGGGGATCATTTCAAAGCGAAC
TTGTTGCCTTGGCCAAATCTGTAGGTAATAAATCAAAAACATTCC
Found at i:69754 original size:13 final size:13
Alignment explanation
Indices: 69736--69760 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
69726 ATTCTACATG
69736 TGTTACCAGTTCA
1 TGTTACCAGTTCA
69749 TGTTACCAGTTC
1 TGTTACCAGTTC
69761 GTTACCATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.20, C:0.24, G:0.16, T:0.40
Consensus pattern (13 bp):
TGTTACCAGTTCA
Left flanking sequence: Indices 69236 -- 69735
AGTTACTACCATCGTCGAATGGATTTAAGGGGAATCACAATATGACTCTTATTATGGCACCTGTT
GAGAGAAGTTGATAAGCCCATTTTTGTAGTATCACTTATATAATGAACGATGAAAAAAATAATAC
ATCTTACAAAATAATAGGCGTTCCCCAGATTACCCAGTCCCGAATTATACCAGTATACCATTATC
ACATTCCCCGGTCCCGCATTCAGTCAGCACCCTTTCACCTTATACCTTTCACTTACCGGTATTAT
GAAAACGGTTACTACTCCCCTTACCCTTTCAGGCCCTGCTTGATGTTGTACGTAAACTCAAAGGA
GTTGTACGTGACCTGTTTAAATACCCTCCCTTCCCTACCCAAAAGGAGTTGTTCTACGTGCTGTT
CTATATTTCCCATGTACGGAAGGAGGAGGTGCTGGTGGTGTCCTATGTGCGTTAACTTTTTGTGA
TTCCCCCTGCCCAGGAGGGTTTTTGAAGTTAGGTGATTCTACATG
Right flanking sequence: Indices 69761 -- 70260
GTTACCATGTGCACAGGAAGTAAGCAGGGGTTGATTCCAAGTGTGTTTTTCGATGTTACCAGTTC
GATGTGCACAGGAGTTGATTCTCTTTTTTTTCTCTTTTATACTTCCCACGTGCCCAGTTAGTGAG
GTTGGTGTTCGTGCCATGTGTGAACCATTTTCAGTCAGCTATGGCAAGTGGCACCGGTTAGTAGT
AGGGATTGTTCCATTTACCACATAGGCAGAGAGGTGGAGAGGGGCGGTACAACAGACGGATTATT
TAGCCGTGTTAGGCGGACCAATAAATATGATGCTCCTTCCCGGGTTCTTACCCGGGTTATTATGC
TCCTTACCTATATATGTTGCCAATAGAGGTGTTGTCAAGGTGGATCGAGAGAGCAAGTCTACAAC
AGCTTGTTTATTTACGATTCAACTGGTTAGGAGGTGCACTTATTCAATTCGCCCAGGACATGGTT
ACGAGAAAAGAGAGGAGGAAAATACCAACCGCGTTACCAACTGAC
Found at i:71794 original size:24 final size:24
Alignment explanation
Indices: 71749--71794 Score: 56
Period size: 24 Copynumber: 1.9 Consensus size: 24
71739 CACGCACTCG
* *
71749 TTTCTCGCTCACCCACTCGTTTCT
1 TTTCTCGCTCAACCACACGTTTCT
* *
71773 TTTCTCGCTCAACTACAGGTTT
1 TTTCTCGCTCAACCACACGTTT
71795 GGTACTCGTG
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 18 1.00
ACGTcount: A:0.13, C:0.35, G:0.11, T:0.41
Consensus pattern (24 bp):
TTTCTCGCTCAACCACACGTTTCT
Left flanking sequence: Indices 71249 -- 71748
GCTGAAGGCAAGTGTGGTTGGGCAGCACTCCATCTCTCTCCTAGGGTAAAGGCAGTAATCAAGTA
AAGGGTAAGGTGATCATCCATCCCATCCGGTCCTTCAAGGGACAAATTGCTGACTCACTCACTTC
ACTACGTGGATTCTTGGGGCTCCAGGTCTAGTTCGAGCAGGTGAAAGAGTCAAGTTTCTTTCATA
GAGAATACTTTACAGCTACTTTAGTGTTCCTGGCTGATAGAGACTCTATCCCCTTCCCTAATCTG
GTGCTGCTTCAAAGGTCTGATATTCGTGGCTCTAACAGGTAACTGAGAACTGTAAACTGGTAACT
TATAAGACCTCATGTTCTAGGGCTTCAACATAGAAGGGTATTTCTGGCAGGTGAAAAAGCAATGC
CCTTTCTTTCGACTCCCGTCCTGACTCTCTTAAGCGGACCCGTACCGGTACCTGCCCTCCCTGAA
ACACCCACCCATGCAGCATATATAAAGCTAACCTTCACGCACTCG
Right flanking sequence: Indices 71795 -- 72294
GGTACTCGTGATCAAAGGTTCTCAACTGATTCATTACTCAATTACTGGGTGAGTTGTTCTCTCTC
TTGAACCCACCCCCGTAGGTCCTCATGGGAAGGTAGCAATCAATCAATCTTAGTTTATAAGTGTA
ACCCGTACTGATTCGGTCTGTTCCTGACTAACCTAACCGTCCCGTCCCAGATAAGACCTAACCGT
ACACGCTCTTTCTTTCTGCCAGGTCCTGCTTAAAGTGGCGCTGTTTCATCTTTTGCGGATGGATG
AAGCGATAGCGCTAGCACCCTCCTAATGGGCAAGCGATAGGATCAACCCTAATGGGAAGGTAACA
AAAGCAAGCAATGTCCTGATGAAACCGGTCTGCCTGACTCCTCACCTAACCAGACCGTACCGGAA
CCCGCCCTGAACCAACCATGCAACATATATAAAGCTAACCTGTATATTTATTCACGCACTCGGCT
CTCGCTCAGGCACGACACTAATTAACCACAGGTTGTGGTTCACCA
Found at i:74267 original size:18 final size:15
Alignment explanation
Indices: 74229--74257 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
74219 GGATGGAAAT
74229 AAAGCCTGGTGCAGC
1 AAAGCCTGGTGCAGC
74244 AAAGCCTGGTGCAG
1 AAAGCCTGGTGCAG
74258 GTACAAAGCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.28, C:0.24, G:0.34, T:0.14
Consensus pattern (15 bp):
AAAGCCTGGTGCAGC
Left flanking sequence: Indices 73729 -- 74228
TTGCCTAGGAAAGCACCCCAGATCCTGGTGGCTGGCCCTTACGGTGATACCCTATGTCCTACTCC
TTCCCACGCTACCATACCCAGGCGATTTGGTTCTACCGGCGTCGTCACAGCTGGTCCAATTCAAG
AGCCTAGTAAAATATTACAAGCAGGACCGTCTACCGTTCGTAATTGCGTTCTCCTGTACAGTAAT
AGACCTAGCGGAGAAATAGAAGCGAGCTGGAAGGCTTAGTGTCTTTTCGGGGTCATTGGCTTTAT
AGATACATGTGTTTATTGGTTGTTTACCAACTAACCTCCCATACGGTTAGCTGCTTGCTTTCGAA
CTTCCTCTCTTTGCTCTTGGTTCAATCGCTTAGACGACCTCTCCATCTTTATCCGTTTACTAGGG
ACCATGAAACGGGTGCTGCAACGGCTGCTACTGGATCTACTACTGGGTATCGCTCACGATCTGGA
ACATATTGATATCGATCGCCAAGGGCTTCGTAAAAGGATGGAAAT
Right flanking sequence: Indices 74258 -- 74757
GTACAAAGCCAGCAGGTGCTCGTGAAAGGAGGACGGAAATATTGTCATGGTACTGGTTATGCTCA
GGATCAAAAGAACTCTCTGAAGCGGGGGAACTCTGCCTGCCGGGATACCGGTCACTATCGTAATG
AAACGACTGAGACTAACAAGCAAGAGAAGACGAAGTGGCTGACCACTGCCAATGACAATACCTAT
TCCGCCTTCTTTCTCTTATCTTCTGCTGTACGAACCCTGCCTGGGAAGAGCTTAAACCCTTTCGG
CCTCCGGAGGAACAGTAAGAAACCTCGATCTCGTACTTAGCTCAGCCTCCGTAGGAACAATAAGA
AGAAATCCATCCAGTAAGCTTTACCCCTGCTACGTTAAGGTTATAGGATTGCTCCATTGAGCTCG
AGTTATGTGGGACGACGACTATGATATTGATATTGATCGTTCCGGTACCGGTAAGAGCTATTCAG
TTCACCAACCATCTCAAGCTTTACCCTTGGCTTTACCCCATATCA
Found at i:76034 original size:15 final size:15
Alignment explanation
Indices: 76014--76061 Score: 57
Period size: 15 Copynumber: 3.4 Consensus size: 15
76004 CATTACGTAT
76014 ATAATTCATGAATGC
1 ATAATTCATGAATGC
* *
76029 ATAATT-ACGTAT--
1 ATAATTCATGAATGC
76041 ATAATTCATGAATGC
1 ATAATTCATGAATGC
76056 ATAATT
1 ATAATT
76062 ACGTATATAA
Statistics
Matches: 26, Mismatches: 4, Indels: 6
0.72 0.11 0.17
Matches are distributed among these distances:
12 6 0.23
13 4 0.15
14 4 0.15
15 12 0.46
ACGTcount: A:0.42, C:0.10, G:0.10, T:0.38
Consensus pattern (15 bp):
ATAATTCATGAATGC
Left flanking sequence: Indices 75514 -- 76013
GCGTAGCATCAGGGATGCCACTTTCACACTTTCAATTCTGGTAGTTCTATAAAGTCTTTCCATTC
TTTCGAACCTTCCTTTTTCCCGTTAGCGATCAGTTTCTCCTTATCTCTTCTTTCTTCCCCTATCC
CTTTGGTTGAGCGACTACGTACCTCAAAGAGTTACGCGAAGGTCGGGATATCCTTATTTCCATAA
TAATATGAATATTTTGAAACTCAGGAATTATTGTTCACCTGAGCACCTCTTCCCCCTCATCCGAA
TCGGAAGGCTCAGAATCAAACCAAAATAATAATAATAAGAATTGCATGAAACCTAATAGAAGATG
TTGGCCCAAACACAGAATCGGGAGCAATTAAGATGTGGCATAGAGCAGCTATCGCTATTCTCTAT
GGGAGCGAGTAGATATGCGATTATCATATTTATGATTTAAAGGGTGAGGTACGTTAAGTGGCTCG
ACCAACTTATCAATTAAGAAATGATGAAATTGTGTCATTACGTAT
Right flanking sequence: Indices 76062 -- 76561
ACGTATATAATGACTGCCATGCATGCCTACCCTAGCATATTACTTACGAGCATGCCATCCATATC
ATACCAGGCTGGTAGGTGGGGTGCCTATGCCTGGTTGGGATACTATTGCGGGTATGAGAAGGGCC
CGAAATGAGAAGGGTTGGGATACAATACAAGACCTGGCATTTCAATGACTTTCCAGGTGTACACT
TACTTCGTGACATAAGGCATAGCATTGAGGGAAGAAAACAGGGCACGCACGTGATAGGCGGACCT
ATTTGATACAGTCAAGTGCATGTAAATAACGTAAGATACATTTGGACCCCCGGTGTTGACTTCGT
TACATAAGGCATGGCAAGGCCCTTACACGTTACTTAGGCATGGCAAGACCAAGTGAATCTAGTTC
TAGGCGGACCTATTTGAAGAAGAAAGGCCCTATAAGGTAGGTAGGGGTAAATACTTCCTTGCCCT
CAGAAGCGCAAGCCCTCCGGACCTTGCCTTGCTTGATAGTATTAG
Found at i:76036 original size:27 final size:27
Alignment explanation
Indices: 76005--76072 Score: 136
Period size: 27 Copynumber: 2.5 Consensus size: 27
75995 AAATTGTGTC
76005 ATTACGTATATAATTCATGAATGCATA
1 ATTACGTATATAATTCATGAATGCATA
76032 ATTACGTATATAATTCATGAATGCATA
1 ATTACGTATATAATTCATGAATGCATA
76059 ATTACGTATATAAT
1 ATTACGTATATAAT
76073 GACTGCCATG
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 41 1.00
ACGTcount: A:0.41, C:0.10, G:0.10, T:0.38
Consensus pattern (27 bp):
ATTACGTATATAATTCATGAATGCATA
Left flanking sequence: Indices 75505 -- 76004
TCTACACGCGCGTAGCATCAGGGATGCCACTTTCACACTTTCAATTCTGGTAGTTCTATAAAGTC
TTTCCATTCTTTCGAACCTTCCTTTTTCCCGTTAGCGATCAGTTTCTCCTTATCTCTTCTTTCTT
CCCCTATCCCTTTGGTTGAGCGACTACGTACCTCAAAGAGTTACGCGAAGGTCGGGATATCCTTA
TTTCCATAATAATATGAATATTTTGAAACTCAGGAATTATTGTTCACCTGAGCACCTCTTCCCCC
TCATCCGAATCGGAAGGCTCAGAATCAAACCAAAATAATAATAATAAGAATTGCATGAAACCTAA
TAGAAGATGTTGGCCCAAACACAGAATCGGGAGCAATTAAGATGTGGCATAGAGCAGCTATCGCT
ATTCTCTATGGGAGCGAGTAGATATGCGATTATCATATTTATGATTTAAAGGGTGAGGTACGTTA
AGTGGCTCGACCAACTTATCAATTAAGAAATGATGAAATTGTGTC
Right flanking sequence: Indices 76073 -- 76572
GACTGCCATGCATGCCTACCCTAGCATATTACTTACGAGCATGCCATCCATATCATACCAGGCTG
GTAGGTGGGGTGCCTATGCCTGGTTGGGATACTATTGCGGGTATGAGAAGGGCCCGAAATGAGAA
GGGTTGGGATACAATACAAGACCTGGCATTTCAATGACTTTCCAGGTGTACACTTACTTCGTGAC
ATAAGGCATAGCATTGAGGGAAGAAAACAGGGCACGCACGTGATAGGCGGACCTATTTGATACAG
TCAAGTGCATGTAAATAACGTAAGATACATTTGGACCCCCGGTGTTGACTTCGTTACATAAGGCA
TGGCAAGGCCCTTACACGTTACTTAGGCATGGCAAGACCAAGTGAATCTAGTTCTAGGCGGACCT
ATTTGAAGAAGAAAGGCCCTATAAGGTAGGTAGGGGTAAATACTTCCTTGCCCTCAGAAGCGCAA
GCCCTCCGGACCTTGCCTTGCTTGATAGTATTAGGCAATGAGATA
Found at i:78961 original size:20 final size:20
Alignment explanation
Indices: 78936--78997 Score: 66
Period size: 20 Copynumber: 3.5 Consensus size: 20
78926 TAGGTGAGTT
78936 AGGTAGGTGGGAAGACCCTA
1 AGGTAGGTGGGAAGACCCTA
*
78956 AGGTAGGT--G-AG----TT
1 AGGTAGGTGGGAAGACCCTA
78969 AGGTAGGTGGGAAGACCCTA
1 AGGTAGGTGGGAAGACCCTA
78989 AGGTAGGTG
1 AGGTAGGTG
78998 AGTTAGGTAG
Statistics
Matches: 33, Mismatches: 2, Indels: 14
0.67 0.04 0.29
Matches are distributed among these distances:
13 9 0.27
15 1 0.03
16 2 0.06
17 2 0.06
18 1 0.03
20 18 0.55
ACGTcount: A:0.27, C:0.10, G:0.44, T:0.19
Consensus pattern (20 bp):
AGGTAGGTGGGAAGACCCTA
Left flanking sequence: Indices 78436 -- 78935
CTCGCTCGTGAAACGAATCAAGTGGGGGGGGCGGATTCCCCGGTGGCTCTCACCCCGTGGGGGCT
ATGGGGAGTCGGGATTCGGATTGCTTGCCCTCCCCTTGCTTGATGGATGAATAAATAGATTGATT
CTGGCTGGAAGGAGTTTCATTCAGGGTGAGGGTGGTTCTGGCTGGAATCAAGAGGGGAGAAACTC
CGGAATCACCCTCACTCACCGATCACCTGGGAGGGTGATACTCTAGTATAGGAACTGTAGTTGAA
GGAAGTAGGTTCTAATTTGTGAGGGAAGGGGAAGATAAGGTAAGAGAGATATCTAAGGGAAGGGA
AAAGAATGGAAAGGCAAAGTATATAAGTGAGATCACCCTATATATAAGGGAAGATAAGGCTAATC
ACCCTATCCTTCCTTGACTACACCCAGGCAGGTAAGTGAGTTATGGTAGGTGGTATGCCTATCCC
CGGAGGTAGGTGAGTTAAGGTAGGTGATCCCAAGGTAGGTGAGTT
Right flanking sequence: Indices 78998 -- 79497
AGTTAGGTAGGTAGGTGGGCCAAGGTAGGTGAGTTAGGGTAGGTTATCTGACCTGAACTCAAGCT
AGGTAGGCACGGGTAGACTTATTACCAGATGAGTTATGGTAGGTGGGATGGCTTGACTCACTAGG
TAGGCATGGGACGGGAAGATTCTAAGGGAGGTAGGTGAGATGGCTTTACTCACTAGGTAGGCATG
GACCTTATCGGGGCGTAGAAGCCGAAGGCGTAGCAAGCTTAGTTCTTCCGAAGGCGTGGAGGGCA
AGGACATGGCTTAGCAAGCAGGGTTATTGAAGTTCTTTAAGCCGAGGGAAGGAATGGCTTAGCAA
TTAGCAAGCTTAGCCATGAGCATAGAAAGATTAATGCTAAAGCGTAATTACATATATAATTCATG
AATGCATAATGACATATATAGTCGTTTTCGGGTGGTATTGAGTTATGTCGTAATGACATATATAA
TACCAACATGCAGATGACCTTCTCAGAGAGGGGGGACGGGACGGG
Found at i:79009 original size:37 final size:33
Alignment explanation
Indices: 78894--79041 Score: 184
Period size: 33 Copynumber: 4.6 Consensus size: 33
78884 CTATCCCCGG
*
78894 AGGTAGGTGAGTTAAGGTAGGT--G-A-TCCC-A
1 AGGTAGGTGAGTT-AGGTAGGTGGGAAGACCCTA
78923 AGGTAGGTGAGTTAGGTAGGTGGGAAGACCCTA
1 AGGTAGGTGAGTTAGGTAGGTGGGAAGACCCTA
78956 AGGTAGGTGAGTTAGGTAGGTGGGAAGACCCTA
1 AGGTAGGTGAGTTAGGTAGGTGGGAAGACCCTA
* * **
78989 AGGTAGGTGAGTTAGGTAGGTAGG-TGGGCC-A
1 AGGTAGGTGAGTTAGGTAGGTGGGAAGACCCTA
79020 AGGTAGGTGAGTTAGGGTAGGT
1 AGGTAGGTGAGTTA-GGTAGGT
79042 TATCTGACCT
Statistics
Matches: 108, Mismatches: 5, Indels: 9
0.89 0.04 0.07
Matches are distributed among these distances:
28 8 0.07
29 13 0.12
30 1 0.01
31 16 0.15
32 13 0.12
33 57 0.53
ACGTcount: A:0.26, C:0.07, G:0.44, T:0.23
Consensus pattern (33 bp):
AGGTAGGTGAGTTAGGTAGGTGGGAAGACCCTA
Left flanking sequence: Indices 78394 -- 78893
AAAGAAAGTGACCGCTTTATACCACTGGTAGCCCGCTTCACTCTCGCTCGTGAAACGAATCAAGT
GGGGGGGGCGGATTCCCCGGTGGCTCTCACCCCGTGGGGGCTATGGGGAGTCGGGATTCGGATTG
CTTGCCCTCCCCTTGCTTGATGGATGAATAAATAGATTGATTCTGGCTGGAAGGAGTTTCATTCA
GGGTGAGGGTGGTTCTGGCTGGAATCAAGAGGGGAGAAACTCCGGAATCACCCTCACTCACCGAT
CACCTGGGAGGGTGATACTCTAGTATAGGAACTGTAGTTGAAGGAAGTAGGTTCTAATTTGTGAG
GGAAGGGGAAGATAAGGTAAGAGAGATATCTAAGGGAAGGGAAAAGAATGGAAAGGCAAAGTATA
TAAGTGAGATCACCCTATATATAAGGGAAGATAAGGCTAATCACCCTATCCTTCCTTGACTACAC
CCAGGCAGGTAAGTGAGTTATGGTAGGTGGTATGCCTATCCCCGG
Right flanking sequence: Indices 79042 -- 79541
TATCTGACCTGAACTCAAGCTAGGTAGGCACGGGTAGACTTATTACCAGATGAGTTATGGTAGGT
GGGATGGCTTGACTCACTAGGTAGGCATGGGACGGGAAGATTCTAAGGGAGGTAGGTGAGATGGC
TTTACTCACTAGGTAGGCATGGACCTTATCGGGGCGTAGAAGCCGAAGGCGTAGCAAGCTTAGTT
CTTCCGAAGGCGTGGAGGGCAAGGACATGGCTTAGCAAGCAGGGTTATTGAAGTTCTTTAAGCCG
AGGGAAGGAATGGCTTAGCAATTAGCAAGCTTAGCCATGAGCATAGAAAGATTAATGCTAAAGCG
TAATTACATATATAATTCATGAATGCATAATGACATATATAGTCGTTTTCGGGTGGTATTGAGTT
ATGTCGTAATGACATATATAATACCAACATGCAGATGACCTTCTCAGAGAGGGGGGACGGGACGG
GAAGAAAGAGAGAGAAATCTAGCTCTCGTATCGACAAGGTCGGTT
Found at i:80051 original size:56 final size:56
Alignment explanation
Indices: 79965--80075 Score: 222
Period size: 56 Copynumber: 2.0 Consensus size: 56
79955 AAGCAAGCCC
79965 TGCCGGACCTTGCCCGATGCGGACAAGCAGGTAAACCTCCTTGCCTTCCTATTTCG
1 TGCCGGACCTTGCCCGATGCGGACAAGCAGGTAAACCTCCTTGCCTTCCTATTTCG
80021 TGCCGGACCTTGCCCGATGCGGACAAGCAGGTAAACCTCCTTGCCTTCCTATTTC
1 TGCCGGACCTTGCCCGATGCGGACAAGCAGGTAAACCTCCTTGCCTTCCTATTTC
80076 TTCTCTGGCG
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
56 55 1.00
ACGTcount: A:0.18, C:0.34, G:0.23, T:0.25
Consensus pattern (56 bp):
TGCCGGACCTTGCCCGATGCGGACAAGCAGGTAAACCTCCTTGCCTTCCTATTTCG
Left flanking sequence: Indices 79465 -- 79964
GATGACCTTCTCAGAGAGGGGGGACGGGACGGGAAGAAAGAGAGAGAAATCTAGCTCTCGTATCG
ACAAGGTCGGTTCATCGAGCCGCAACATACGTGGATGCATAAGGCAAGGTGGATGGCATCTCTCT
TCATTGTTGGCCCAGACTGGAGCGCCCAGCCCAGCTGGCACAAAAATGGCCGGATTCTTCCAACA
GGCCATGCTTCCGGGGCGGGGGAGCAAGCGCATAAGCCCGCCACCGCGGTATGGGCCATCGCGGC
TACTCTGGCACTGAGTGCGCTCAGGAGAAAACGGTTGGGAGGGTTCGACGCTCCTGGTGAGGGTA
AGGAACCCCCTTCGTTCCATTATGCAAAGCTCGAAATGAGGAACGGAGGCCTTGCCCCCCGGAGG
GACAAGCGGCTTCGCACCTTGCTTTCCTAACGTCAAGCAAGCAAGAAATTCCTCTCCTTATCAGT
CGAGCCCCCTGTCGGGTCCTTGCTTTCCTAACGTCAAGCAAGCCC
Right flanking sequence: Indices 80076 -- 80575
TTCTCTGGCGGCTTCGCACCTTACTTTCACTCACATCAGCACTCCAGCCCAGCAGCCAGACAATG
GTTGGAACATTGAAAACCTATGATGGAACCTCAGCGGGTAACTCAATAACAGCAAAACCTCACTC
ACTTGAGAGACCCTATTATTGAATCCTTGAAAACACATGCCCTCTGAAGCAGCCCCCCCTGGGAG
AAACCGGACACTTGAAGAAAGAATATATAAATAAAGGCCTCGGCATGACTCTTCGTCTAGCCACG
TAGGGGGGGGGAGACCTTCGAACAGGCACCTGAGGGAATTGGGAAATATGTTTCATGGAAGTTGC
GTCACGATGGTAGGGGAAAAGAACGGAAGCAGAACTTGGTGGATCTTGCAAGGAGGGGAGATGAT
TCGCTTGATAGTCCACCCGGCAATGCCTTAAGCGAGAGAGAAAGAGAAGTAGGTATAGCCCCACG
GGAGGGGATCTTAGGTGGAGGAGCTCGCTGCAGCTTCCTGCATTC
Found at i:82346 original size:18 final size:18
Alignment explanation
Indices: 82312--82347 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
82302 CTATCTATAT
*
82312 ACTGATCCACCTCAGCTA
1 ACTGATCCACCTAAGCTA
*
82330 ACTGATCCACTTAAGCTA
1 ACTGATCCACCTAAGCTA
82348 GTACATTTCA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.31, C:0.33, G:0.11, T:0.25
Consensus pattern (18 bp):
ACTGATCCACCTAAGCTA
Left flanking sequence: Indices 81812 -- 82311
ATACGAACAAAAGGACGACTGGTTCGCCTAGAACAGGAGTGGGTCTCCCAAAGGAGTAGAAAAAC
TCAGTGAAAAGTCTGTTGAAGACCAGATGCCCTAACGCCATAACAATCATATGTCACAGCACGGC
TAGAAGGCCAAAATGACATTTACCAAAAACAAGGACACGACGGAATCACCGAATGGAGATACTCC
CATCAGCCGCTAGACCAGGCAGAGATACAGAAGCACCCTTTAGCTCGGACCCATACCCATTTACA
GGCCTATATGAGATTAGTACAGGCACTCATATCTCCGCTTCATCTACCCTGAAGCAGACACAGTT
GAGCTAGCGGAACCTCGAAAGAGATCGTGTCACCTATCTATACTTACTTTTTCTACTGAACCAAG
CAATCGAACCTGCCAAGCCATCAAACCCATACTGCTTATATCAGCAAGAGAAAGAACTATTATCA
CACTCTTTAGAAGAGATACCCGCACAGTAGGACCTCTATCTATAT
Right flanking sequence: Indices 82348 -- 82847
GTACATTTCAGAATAGGAATACTTAGGTCACTTATTTGAGAGGGGCCACCCAATAAGTCAATTAG
GGATAACCGAGCCTCTTCCGATCAACTGGGATTGGTTCCGTTACCTAAGATTGGTGGGGCATGAA
GCGTAATACTAAGCCTTACGAATCAGGCTTGCTGGGGCAATGGTGGAGGGAGAAAATGAACCCAA
AAGAGCCTATGAATGGCAGACATAATATCGTACATTAAGCTATTTCCCATTTTCTTCCCCAAACG
TTGCGCGCTTTTTGAAGAGAAATCGCCGAAACCCCGAAAATGACCTATCCCGTTGGTCGAGCCTG
CTTGCGCAACCTCATTTTCACCTATTTTTGGCAGGCATAATTACGTACATTAAGCGATTTCAATG
ATTCTCCTCCGAGAAATGTTTGTCGAAATGTGAGAGAAATGTTTGTCGAAATACGAGTATTTCTA
TCCCCAAAGTGCAGAATAGGGTTATTCCCTTCCTTCTCCTTCGTC
Found at i:84035 original size:90 final size:92
Alignment explanation
Indices: 83877--84093 Score: 287
Period size: 90 Copynumber: 2.4 Consensus size: 92
83867 GGTCATTCTT
* ** *
83877 AGAGTTCAACACGCTTTCAAAAGTGGGGAATTTCACTAGTGGAAAGGTGGCCTATCAGTTAGACA
1 AGAGTTCAA-ACGCTTTCAAAAGTGGGGAAATTCACTAGCAGAAAGGTGGCCTATCAGTTAGAAA
*
83942 TTAGTAGCCCTGCTACCCGCTAAATTGG
65 TTAGTAGCCCTGCAACCCGCTAAATTGG
* *
83970 AGAGTTCAAACGCTTTCAAAAGT-GGGAAATTCAGTA-CAGAAAGGTGGCGTATCAGTTAGAAAT
1 AGAGTTCAAACGCTTTCAAAAGTGGGGAAATTCACTAGCAGAAAGGTGGCCTATCAGTTAGAAAT
* * * *
84033 TAGTAGCCTTGGAACCTGGTAAATTGG
66 TAGTAGCCCTGCAACCCGCTAAATTGG
*
84060 AGAGTTCAAACGCTCGTC-AAAGTGGGGAAATTCA
1 AGAGTTCAAACGCT-TTCAAAAGTGGGGAAATTCA
84094 TGAATGAAAA
Statistics
Matches: 110, Mismatches: 12, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
90 64 0.58
91 23 0.21
92 14 0.13
93 9 0.08
ACGTcount: A:0.32, C:0.17, G:0.26, T:0.25
Consensus pattern (92 bp):
AGAGTTCAAACGCTTTCAAAAGTGGGGAAATTCACTAGCAGAAAGGTGGCCTATCAGTTAGAAAT
TAGTAGCCCTGCAACCCGCTAAATTGG
Left flanking sequence: Indices 83377 -- 83876
TAAGGGGCTTGTTTGTTCCATCCCCGCCAATACTATCCCTGAAAACGTTGGGCTGTAGGTTCGGG
GCTTCTCCAATACCCTGAAAACATGGAGCTTTGGTAGGCTGTGGGTAAGAGACACCCATAACGTC
TATAGGCTGCTTAGTGATAGGCGTGTCTAGGCGAATAGTGTCTAAGGTCGTGGCGTCTATCTGGG
GTGTGTAGGGGAGTGGTGTCTAAGGTAGTGGGTAAGGTTCCTGCAAGACCATCCTACCTAAGTCA
AGCGCTTAGTACCTGCTGCAATTCCCACTTCAAGGTCAGCTAGCCGTATGATAGAGCAAATGAAC
CTGGCCTATCGACGAACTGGGAAATGATAGAGAGGAAAGGTGGCGTATGGGAAGTAGCTGGGAAT
ATCTATTTCCTCACCATATGAATAGTGAGTCCCTACCGGGCCTGACCCCGGCCTATCGAGAACTG
GTCAATTGGAAAGTGAAAAGGTGGCATATCCAGGTGGTCATTCTT
Right flanking sequence: Indices 84094 -- 84593
TGAATGAAAAGGTGGCGTATGCAGGATGCCAAGCCGAGTAGCCCAGTCGATTAGTCCAGCCAAAT
AGCGCAGCAGCCACAGTCGAGTATCCCGGTATCCAAGCCAATTCAATCAGCCGAGTAGCCAAGCC
CGGTATTCCATCACACCCCTGATCCCAGCCCCTGATCCCAGGCGAGTAGAGATAGTAGCCCTAGT
AGAGTGGCCAAGTAGAGAAAGAGTAGCCAAGCCGAGTAGCCCAACCGAGCAACCCAACCGTGCAG
CCCAGCCCAGGTAGGATCTATTGTTCCGTATTGATAAGTGAGGTAGGCATCGAGGTCGAGGGTAG
AGAGGGTCAAGTTCGAGGGCTATGTTTGGCAAGGGGGTTTCCAAGGGCTGTTGGTTCGCTGCTTT
CTTTCGGTTCGCTGACAAGATCAAATATCTCATCAGGTAGGTGAGACTGTGGCCTTGAGGTTATA
TCACCTGCCTAGGTCTGTTTAGCATAAGTAAGATCTATTGGGCAA
Found at i:84257 original size:13 final size:13
Alignment explanation
Indices: 84239--84264 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
84229 TTCCATCACA
84239 CCCCTGATCCCAG
1 CCCCTGATCCCAG
84252 CCCCTGATCCCAG
1 CCCCTGATCCCAG
84265 GCGAGTAGAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.54, G:0.15, T:0.15
Consensus pattern (13 bp):
CCCCTGATCCCAG
Left flanking sequence: Indices 83739 -- 84238
AGGTGGCGTATGGGAAGTAGCTGGGAATATCTATTTCCTCACCATATGAATAGTGAGTCCCTACC
GGGCCTGACCCCGGCCTATCGAGAACTGGTCAATTGGAAAGTGAAAAGGTGGCATATCCAGGTGG
TCATTCTTAGAGTTCAACACGCTTTCAAAAGTGGGGAATTTCACTAGTGGAAAGGTGGCCTATCA
GTTAGACATTAGTAGCCCTGCTACCCGCTAAATTGGAGAGTTCAAACGCTTTCAAAAGTGGGAAA
TTCAGTACAGAAAGGTGGCGTATCAGTTAGAAATTAGTAGCCTTGGAACCTGGTAAATTGGAGAG
TTCAAACGCTCGTCAAAGTGGGGAAATTCATGAATGAAAAGGTGGCGTATGCAGGATGCCAAGCC
GAGTAGCCCAGTCGATTAGTCCAGCCAAATAGCGCAGCAGCCACAGTCGAGTATCCCGGTATCCA
AGCCAATTCAATCAGCCGAGTAGCCAAGCCCGGTATTCCATCACA
Right flanking sequence: Indices 84265 -- 84764
GCGAGTAGAGATAGTAGCCCTAGTAGAGTGGCCAAGTAGAGAAAGAGTAGCCAAGCCGAGTAGCC
CAACCGAGCAACCCAACCGTGCAGCCCAGCCCAGGTAGGATCTATTGTTCCGTATTGATAAGTGA
GGTAGGCATCGAGGTCGAGGGTAGAGAGGGTCAAGTTCGAGGGCTATGTTTGGCAAGGGGGTTTC
CAAGGGCTGTTGGTTCGCTGCTTTCTTTCGGTTCGCTGACAAGATCAAATATCTCATCAGGTAGG
TGAGACTGTGGCCTTGAGGTTATATCACCTGCCTAGGTCTGTTTAGCATAAGTAAGATCTATTGG
GCAAGCAGCAATCAACTACTATCGGGTATCATGTGTCAGCTTTCATCAGTCCCAGCCGATCTCTC
TTTCCCAACCGAGAAAAGAAATCAATATAGTGAGCAAGGAGCACATAGGTAATCCCGCGCCGGTT
CATTTCTTCTTCCAGCCCACCTCTTCAAGCAGCCCATGGTGGCAA
Found at i:84357 original size:13 final size:13
Alignment explanation
Indices: 84315--84357 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
84305 GAAAGAGTAG
*
84315 CCAAGCCGAGTAGC
1 CCAA-CCGAGCAGC
*
84329 CCAACCGAGCAAC
1 CCAACCGAGCAGC
*
84342 CCAACCGTGCAGC
1 CCAACCGAGCAGC
84355 CCA
1 CCA
84358 GCCCAGGTAG
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
13 21 0.84
14 4 0.16
ACGTcount: A:0.30, C:0.44, G:0.21, T:0.05
Consensus pattern (13 bp):
CCAACCGAGCAGC
Left flanking sequence: Indices 83815 -- 84314
CGGCCTATCGAGAACTGGTCAATTGGAAAGTGAAAAGGTGGCATATCCAGGTGGTCATTCTTAGA
GTTCAACACGCTTTCAAAAGTGGGGAATTTCACTAGTGGAAAGGTGGCCTATCAGTTAGACATTA
GTAGCCCTGCTACCCGCTAAATTGGAGAGTTCAAACGCTTTCAAAAGTGGGAAATTCAGTACAGA
AAGGTGGCGTATCAGTTAGAAATTAGTAGCCTTGGAACCTGGTAAATTGGAGAGTTCAAACGCTC
GTCAAAGTGGGGAAATTCATGAATGAAAAGGTGGCGTATGCAGGATGCCAAGCCGAGTAGCCCAG
TCGATTAGTCCAGCCAAATAGCGCAGCAGCCACAGTCGAGTATCCCGGTATCCAAGCCAATTCAA
TCAGCCGAGTAGCCAAGCCCGGTATTCCATCACACCCCTGATCCCAGCCCCTGATCCCAGGCGAG
TAGAGATAGTAGCCCTAGTAGAGTGGCCAAGTAGAGAAAGAGTAG
Right flanking sequence: Indices 84358 -- 84857
GCCCAGGTAGGATCTATTGTTCCGTATTGATAAGTGAGGTAGGCATCGAGGTCGAGGGTAGAGAG
GGTCAAGTTCGAGGGCTATGTTTGGCAAGGGGGTTTCCAAGGGCTGTTGGTTCGCTGCTTTCTTT
CGGTTCGCTGACAAGATCAAATATCTCATCAGGTAGGTGAGACTGTGGCCTTGAGGTTATATCAC
CTGCCTAGGTCTGTTTAGCATAAGTAAGATCTATTGGGCAAGCAGCAATCAACTACTATCGGGTA
TCATGTGTCAGCTTTCATCAGTCCCAGCCGATCTCTCTTTCCCAACCGAGAAAAGAAATCAATAT
AGTGAGCAAGGAGCACATAGGTAATCCCGCGCCGGTTCATTTCTTCTTCCAGCCCACCTCTTCAA
GCAGCCCATGGTGGCAAGGATGCCCCGCTAGCCCATTTCTCCTTCTCCCAACCAGCAGGACCAGC
CCACCAGCCAGCCTCGTTTCGTTTGTCTCGCCACACATTCTAGCA
Found at i:87021 original size:68 final size:68
Alignment explanation
Indices: 86902--87028 Score: 200
Period size: 68 Copynumber: 1.9 Consensus size: 68
86892 GATCACCACA
***
86902 GCTTACACCTATTTGGGGGTCTAGTATGGGGGGCCTCGTTTCAGTGCGCATTAGGCCCTACAACG
1 GCTTACACCTATTTGGGGGTCTAGTATGGGGGGCCTCGTTTCAACACGCATTAGGCCCTACAACG
86967 ACG
66 ACG
* * *
86970 GCTTACACCTGTTTGGGGGTCTAGTTTGGGGGGCCTCGTTTCAACATGCATTAGGCCCT
1 GCTTACACCTATTTGGGGGTCTAGTATGGGGGGCCTCGTTTCAACACGCATTAGGCCCT
87029 GTTGCGCCTA
Statistics
Matches: 53, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
68 53 1.00
ACGTcount: A:0.16, C:0.24, G:0.31, T:0.29
Consensus pattern (68 bp):
GCTTACACCTATTTGGGGGTCTAGTATGGGGGGCCTCGTTTCAACACGCATTAGGCCCTACAACG
ACG
Left flanking sequence: Indices 86402 -- 86901
AGGTGAATTCCACCTGAAGCACCAGACAATCGATCACGTCTTCATACTAAGGGCCATTGGAGGCT
CATCATCGCTCTTTGAAAGTCTTTTGCTACTTTGTGGACTTTTTCAAAGCATTTGACACAATACT
AAGAGAGCCTTTGTTTCAACAGCTTCGAGACATTTGCGTCTAGCAGACGATGAGGCTATACGAGT
CGGTCCTTGGCTGCCTTCGTACGGCACACGACCTCTATCACTTCAGATAGAGTACCATAGGAGTT
AAGCAGGGGTGTCCCCTCTCGCCGTCACTTTTTGGGACTACATCGACAAGTTGGAATCTTTCCTC
CGCGAGCATATCCTGAACGGGGACGATTGTCTCCTTCGTTGATGACTTGATCCTACTAGGCTCCT
CCCCTGAGGGCCTACAGAGACAGATTGATGCCTTGACCAGGTTTTATGACCTTCGACGCTTTCAC
CGACTTACATTTCTACTTCCGAGGGAAGACATCGAGATCACCACA
Right flanking sequence: Indices 87029 -- 87528
GTTGCGCCTACTCAACAAGGGATACGGCTCCCTTGCCCTCCTCGAGCAACAATGTTTCCAGAACC
AATTCCAGGACAATTCGTCCAAGCTGTATCTCCTGCATATGATCATCAAAACCACTGTCCTCTAT
TGCTCAGAGATCTAGGGACCAAGTCTGTTGCAGGCCGATTGAGCCAAGACCGAGAGCGTCCATTT
GGTGCCGGTTGCATCAGAGCGACCTGTACTCTTGGCATTGATTAGTTACACTTACGCTCGCTCGG
TTCAACCAACAAAGAAAGCGACTATCGGCGGTTGGTGCCGGCTCAGAATCACCTACTAAGAAAGT
GGGCTTATTCTCTTTTAACCGGGACCTCGTGCTGCTCATGGCCGGGTTGTCTTCCTCCTATTTGC
GCTTGTTGTTATTGTTGGGATGAGAAGCTGCGGACCTCGTTCTAGTTGTTGGGCTTATAATCATC
CTTACCTGCTATACCGATTCTCCCCGAAGCTCTGTCCAAAAGAAA
Found at i:90169 original size:153 final size:153
Alignment explanation
Indices: 89891--90175 Score: 561
Period size: 153 Copynumber: 1.9 Consensus size: 153
89881 CGAGAAATCG
89891 TATGTTATTATTGACCAATAAGATGGCGGAGGGTTTCACAGCTTTCCCTCCTCACCATATGAATA
1 TATGTTATTATTGACCAATAAGATGGCGGAGGGTTTCACAGCTTTCCCTCCTCACCATATGAATA
89956 GTGAGTCCCTACCGGGCCTATTCTTGCCATTTGAGGAGGCGGAGGTTTTAGCGCTCCCGATGGCT
66 GTGAGTCCCTACCGGGCCTATTCTTGCCATTTGAGGAGGCGGAGGTTTTAGCGCTCCCGATGGCT
90021 GCTCCCGTTGGTCATTCTTTAGA
131 GCTCCCGTTGGTCATTCTTTAGA
*
90044 TATGTTATTATTGACCAATAAGATGGCGGAGGGTTTCACATCTTTCCCTCCTCACCATATGAATA
1 TATGTTATTATTGACCAATAAGATGGCGGAGGGTTTCACAGCTTTCCCTCCTCACCATATGAATA
90109 GTGAGTCCCTACCGGGCCTATTCTTGCCATTTGAGGAGGCGGAGGTTTTAGCGCTCCCGATGGCT
66 GTGAGTCCCTACCGGGCCTATTCTTGCCATTTGAGGAGGCGGAGGTTTTAGCGCTCCCGATGGCT
90174 GC
131 GC
90176 CTTATATTGG
Statistics
Matches: 131, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
153 131 1.00
ACGTcount: A:0.20, C:0.24, G:0.25, T:0.31
Consensus pattern (153 bp):
TATGTTATTATTGACCAATAAGATGGCGGAGGGTTTCACAGCTTTCCCTCCTCACCATATGAATA
GTGAGTCCCTACCGGGCCTATTCTTGCCATTTGAGGAGGCGGAGGTTTTAGCGCTCCCGATGGCT
GCTCCCGTTGGTCATTCTTTAGA
Left flanking sequence: Indices 89391 -- 89890
ATCCAATATTTTTCAATAATCACGAAATTTGAGTACCTCGATCCAAGTGGCCCTAAAAAACGAGA
TTTCAATAGATGAAAATATGAAATACTATACCTGGTAGCCCTATACCACTTGATTCATTCATGCA
CTTAGGGAGTGAGTCGGGACTGCTATTTACCTTCTATTATCTGGACCGAATCAACCAACCTTACC
TTCCCCTTCATAATATGTAGATTTGAGTTGTGCCGTAGATGAAATACAACTTAACACTCCGCGTA
CCTTCTTGCATGGATGGAGAACCTGGGTGGGATCCTCCGTGGGAACTGCCCTGTTGGATTATTCT
CTATAGCCAGCCAGAAACTTTAGCAGAGATCCCGGGCCGGATTGAGGAACTAAAGACAGAACTTC
AGAAACATTTATGGATGGATAATTGTCAATTAGGAGAGCCTTGTTGGACGGGCTTCGATAACCAG
ACATCTTCGTACTTGGTACGGCACTTAGAACTGGACGAGAAATCG
Right flanking sequence: Indices 90176 -- 90675
CTTATATTGGGCCCCCTCTCCTCTCCCTCTCCTCTCCCTCTCCTTAACAGTCGAGCACCTAAAGG
TCCTTAGGGTCGAGCACCTAAAGGTTCAATTGACTTATTGGGTGCCCCTCTCAAATAAGTAACTA
GCGTTGGTCGAGCGATGGCGGCCTTATTAGTCGAGCGTTCGTACCTCACCCTGCCGGGGGCATCC
TCTCCTCTCCTCTCCTTAACAGTCGAGCACCTAAAGCTGCCGGGGGCATCCTCTCCTCTCCTCTC
CTTAACAGTCGAGCACCTAAAGGTCCTTATCAGTCGAGCCCCCTAAAGGGTCCTTATCAGTCGAG
CCTGCTTACGCATTCTTATCAGTCGAGCACCTAAAGGTTAGGGTTTACTTATTGGTTTGGGGGGT
TAACAGTCGAGCATGCTTACGCATCCTCTCCTCTCCTCTCCCTCTCCTTAACAGTCGAGCACCTA
AAGGTCCTTAGGGTCGAGCACCTAAAGGTCCTTAACAGTCGAGCA
Found at i:90205 original size:11 final size:11
Alignment explanation
Indices: 90189--90219 Score: 62
Period size: 11 Copynumber: 2.8 Consensus size: 11
90179 ATATTGGGCC
90189 CCCTCTCCTCT
1 CCCTCTCCTCT
90200 CCCTCTCCTCT
1 CCCTCTCCTCT
90211 CCCTCTCCT
1 CCCTCTCCT
90220 TAACAGTCGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.00, C:0.65, G:0.00, T:0.35
Consensus pattern (11 bp):
CCCTCTCCTCT
Left flanking sequence: Indices 89689 -- 90188
GTGGGAACTGCCCTGTTGGATTATTCTCTATAGCCAGCCAGAAACTTTAGCAGAGATCCCGGGCC
GGATTGAGGAACTAAAGACAGAACTTCAGAAACATTTATGGATGGATAATTGTCAATTAGGAGAG
CCTTGTTGGACGGGCTTCGATAACCAGACATCTTCGTACTTGGTACGGCACTTAGAACTGGACGA
GAAATCGTATGTTATTATTGACCAATAAGATGGCGGAGGGTTTCACAGCTTTCCCTCCTCACCAT
ATGAATAGTGAGTCCCTACCGGGCCTATTCTTGCCATTTGAGGAGGCGGAGGTTTTAGCGCTCCC
GATGGCTGCTCCCGTTGGTCATTCTTTAGATATGTTATTATTGACCAATAAGATGGCGGAGGGTT
TCACATCTTTCCCTCCTCACCATATGAATAGTGAGTCCCTACCGGGCCTATTCTTGCCATTTGAG
GAGGCGGAGGTTTTAGCGCTCCCGATGGCTGCCTTATATTGGGCC
Right flanking sequence: Indices 90220 -- 90719
TAACAGTCGAGCACCTAAAGGTCCTTAGGGTCGAGCACCTAAAGGTTCAATTGACTTATTGGGTG
CCCCTCTCAAATAAGTAACTAGCGTTGGTCGAGCGATGGCGGCCTTATTAGTCGAGCGTTCGTAC
CTCACCCTGCCGGGGGCATCCTCTCCTCTCCTCTCCTTAACAGTCGAGCACCTAAAGCTGCCGGG
GGCATCCTCTCCTCTCCTCTCCTTAACAGTCGAGCACCTAAAGGTCCTTATCAGTCGAGCCCCCT
AAAGGGTCCTTATCAGTCGAGCCTGCTTACGCATTCTTATCAGTCGAGCACCTAAAGGTTAGGGT
TTACTTATTGGTTTGGGGGGTTAACAGTCGAGCATGCTTACGCATCCTCTCCTCTCCTCTCCCTC
TCCTTAACAGTCGAGCACCTAAAGGTCCTTAGGGTCGAGCACCTAAAGGTCCTTAACAGTCGAGC
ACCTATCGGAAGCTTTCTCTTTCCTTGCACTAGGAAGCGCAAGCC
Found at i:90432 original size:51 final size:51
Alignment explanation
Indices: 90356--90457 Score: 204
Period size: 51 Copynumber: 2.0 Consensus size: 51
90346 GTACCTCACC
90356 CTGCCGGGGGCATCCTCTCCTCTCCTCTCCTTAACAGTCGAGCACCTAAAG
1 CTGCCGGGGGCATCCTCTCCTCTCCTCTCCTTAACAGTCGAGCACCTAAAG
90407 CTGCCGGGGGCATCCTCTCCTCTCCTCTCCTTAACAGTCGAGCACCTAAAG
1 CTGCCGGGGGCATCCTCTCCTCTCCTCTCCTTAACAGTCGAGCACCTAAAG
90458 GTCCTTATCA
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 51 1.00
ACGTcount: A:0.18, C:0.39, G:0.20, T:0.24
Consensus pattern (51 bp):
CTGCCGGGGGCATCCTCTCCTCTCCTCTCCTTAACAGTCGAGCACCTAAAG
Left flanking sequence: Indices 89856 -- 90355
ACTTGGTACGGCACTTAGAACTGGACGAGAAATCGTATGTTATTATTGACCAATAAGATGGCGGA
GGGTTTCACAGCTTTCCCTCCTCACCATATGAATAGTGAGTCCCTACCGGGCCTATTCTTGCCAT
TTGAGGAGGCGGAGGTTTTAGCGCTCCCGATGGCTGCTCCCGTTGGTCATTCTTTAGATATGTTA
TTATTGACCAATAAGATGGCGGAGGGTTTCACATCTTTCCCTCCTCACCATATGAATAGTGAGTC
CCTACCGGGCCTATTCTTGCCATTTGAGGAGGCGGAGGTTTTAGCGCTCCCGATGGCTGCCTTAT
ATTGGGCCCCCTCTCCTCTCCCTCTCCTCTCCCTCTCCTTAACAGTCGAGCACCTAAAGGTCCTT
AGGGTCGAGCACCTAAAGGTTCAATTGACTTATTGGGTGCCCCTCTCAAATAAGTAACTAGCGTT
GGTCGAGCGATGGCGGCCTTATTAGTCGAGCGTTCGTACCTCACC
Right flanking sequence: Indices 90458 -- 90957
GTCCTTATCAGTCGAGCCCCCTAAAGGGTCCTTATCAGTCGAGCCTGCTTACGCATTCTTATCAG
TCGAGCACCTAAAGGTTAGGGTTTACTTATTGGTTTGGGGGGTTAACAGTCGAGCATGCTTACGC
ATCCTCTCCTCTCCTCTCCCTCTCCTTAACAGTCGAGCACCTAAAGGTCCTTAGGGTCGAGCACC
TAAAGGTCCTTAACAGTCGAGCACCTATCGGAAGCTTTCTCTTTCCTTGCACTAGGAAGCGCAAG
CCCCTCCGGGACCTTGCCCTCCTAACGTCAAGCAAGCGGGTTCCTTTCATTGTCTGAAATGACGT
ATATAATGATGAAATGACGTAGATATGGTCGAGCCTGCTTAACAAACTAATCAATTCTTTTCTCA
ATTCTTCGATAGCGATGCAACATATGCCCATAGCAGCTGCCTTGTAAGCTCTGCTTTTACTGACA
AGGAAAGATAGCTGGTAATAACCCTCAATAAAACCCCACCTCCTC
Found at i:90492 original size:27 final size:26
Alignment explanation
Indices: 90434--90538 Score: 106
Period size: 27 Copynumber: 4.0 Consensus size: 26
90424 TCCTCTCCTC
*
90434 TCCTTAACAGTCGAG-CACCTAAAGG
1 TCCTTATCAGTCGAGCCACCTAAAGG
*
90459 TCCTTATCAGTCGAGCCCCCTAAAGGG
1 TCCTTATCAGTCGAGCCACCTAAA-GG
** * * *
90486 TCCTTATCAGTCGAGCCTGCTTACGCA
1 TCCTTATCAGTCGAGCCACCTAAAG-G
*
90513 TTCTTATCAGTCGAG-CACCTAAAGG
1 TCCTTATCAGTCGAGCCACCTAAAGG
90538 T
1 T
90539 TAGGGTTTAC
Statistics
Matches: 64, Mismatches: 13, Indels: 6
0.77 0.16 0.07
Matches are distributed among these distances:
25 15 0.23
26 13 0.20
27 36 0.56
ACGTcount: A:0.25, C:0.30, G:0.20, T:0.26
Consensus pattern (26 bp):
TCCTTATCAGTCGAGCCACCTAAAGG
Left flanking sequence: Indices 89934 -- 90433
TTCCCTCCTCACCATATGAATAGTGAGTCCCTACCGGGCCTATTCTTGCCATTTGAGGAGGCGGA
GGTTTTAGCGCTCCCGATGGCTGCTCCCGTTGGTCATTCTTTAGATATGTTATTATTGACCAATA
AGATGGCGGAGGGTTTCACATCTTTCCCTCCTCACCATATGAATAGTGAGTCCCTACCGGGCCTA
TTCTTGCCATTTGAGGAGGCGGAGGTTTTAGCGCTCCCGATGGCTGCCTTATATTGGGCCCCCTC
TCCTCTCCCTCTCCTCTCCCTCTCCTTAACAGTCGAGCACCTAAAGGTCCTTAGGGTCGAGCACC
TAAAGGTTCAATTGACTTATTGGGTGCCCCTCTCAAATAAGTAACTAGCGTTGGTCGAGCGATGG
CGGCCTTATTAGTCGAGCGTTCGTACCTCACCCTGCCGGGGGCATCCTCTCCTCTCCTCTCCTTA
ACAGTCGAGCACCTAAAGCTGCCGGGGGCATCCTCTCCTCTCCTC
Right flanking sequence: Indices 90539 -- 91038
TAGGGTTTACTTATTGGTTTGGGGGGTTAACAGTCGAGCATGCTTACGCATCCTCTCCTCTCCTC
TCCCTCTCCTTAACAGTCGAGCACCTAAAGGTCCTTAGGGTCGAGCACCTAAAGGTCCTTAACAG
TCGAGCACCTATCGGAAGCTTTCTCTTTCCTTGCACTAGGAAGCGCAAGCCCCTCCGGGACCTTG
CCCTCCTAACGTCAAGCAAGCGGGTTCCTTTCATTGTCTGAAATGACGTATATAATGATGAAATG
ACGTAGATATGGTCGAGCCTGCTTAACAAACTAATCAATTCTTTTCTCAATTCTTCGATAGCGAT
GCAACATATGCCCATAGCAGCTGCCTTGTAAGCTCTGCTTTTACTGACAAGGAAAGATAGCTGGT
AATAACCCTCAATAAAACCCCACCTCCTCCACTCCCTGATGTCAACCCTTGGTTGGAAAATAGGT
ATCAGGTGGAAACAAAGCAGCTGGAGACAACACAAAGATAGGTTC
Found at i:90677 original size:25 final size:25
Alignment explanation
Indices: 90610--90679 Score: 115
Period size: 24 Copynumber: 2.8 Consensus size: 25
90600 CCTCTCCCTC
90610 TCCTTAACAGTCGAGCACCTAAAGG
1 TCCTTAACAGTCGAGCACCTAAAGG
**
90635 TCCTT-AGGGTCGAGCACCTAAAGG
1 TCCTTAACAGTCGAGCACCTAAAGG
90659 TCCTTAACAGTCGAGCACCTA
1 TCCTTAACAGTCGAGCACCTA
90680 TCGGAAGCTT
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
24 22 0.55
25 18 0.45
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (25 bp):
TCCTTAACAGTCGAGCACCTAAAGG
Left flanking sequence: Indices 90110 -- 90609
TGAGTCCCTACCGGGCCTATTCTTGCCATTTGAGGAGGCGGAGGTTTTAGCGCTCCCGATGGCTG
CCTTATATTGGGCCCCCTCTCCTCTCCCTCTCCTCTCCCTCTCCTTAACAGTCGAGCACCTAAAG
GTCCTTAGGGTCGAGCACCTAAAGGTTCAATTGACTTATTGGGTGCCCCTCTCAAATAAGTAACT
AGCGTTGGTCGAGCGATGGCGGCCTTATTAGTCGAGCGTTCGTACCTCACCCTGCCGGGGGCATC
CTCTCCTCTCCTCTCCTTAACAGTCGAGCACCTAAAGCTGCCGGGGGCATCCTCTCCTCTCCTCT
CCTTAACAGTCGAGCACCTAAAGGTCCTTATCAGTCGAGCCCCCTAAAGGGTCCTTATCAGTCGA
GCCTGCTTACGCATTCTTATCAGTCGAGCACCTAAAGGTTAGGGTTTACTTATTGGTTTGGGGGG
TTAACAGTCGAGCATGCTTACGCATCCTCTCCTCTCCTCTCCCTC
Right flanking sequence: Indices 90680 -- 91179
TCGGAAGCTTTCTCTTTCCTTGCACTAGGAAGCGCAAGCCCCTCCGGGACCTTGCCCTCCTAACG
TCAAGCAAGCGGGTTCCTTTCATTGTCTGAAATGACGTATATAATGATGAAATGACGTAGATATG
GTCGAGCCTGCTTAACAAACTAATCAATTCTTTTCTCAATTCTTCGATAGCGATGCAACATATGC
CCATAGCAGCTGCCTTGTAAGCTCTGCTTTTACTGACAAGGAAAGATAGCTGGTAATAACCCTCA
ATAAAACCCCACCTCCTCCACTCCCTGATGTCAACCCTTGGTTGGAAAATAGGTATCAGGTGGAA
ACAAAGCAGCTGGAGACAACACAAAGATAGGTTCATCGCGATAGCCTCAGTATTTAGTATTTGCA
TAGATGCAAAGATTAGTTGTGAAAGATTGATTGGGAATTACTGTGGATAGAACGCGGATTAGTTA
TATATTGATTACGCGATGGATGAGATTCATTACCTTCTATATCTA
Found at i:93101 original size:15 final size:15
Alignment explanation
Indices: 93081--93111 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
93071 GTTGAACCGA
93081 AAAACTTCACTCCTT
1 AAAACTTCACTCCTT
93096 AAAACTTCACTCCTT
1 AAAACTTCACTCCTT
93111 A
1 A
93112 GTCTATGACA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.35, C:0.32, G:0.00, T:0.32
Consensus pattern (15 bp):
AAAACTTCACTCCTT
Left flanking sequence: Indices 92581 -- 93080
TGGCTTGTAAGAAGACCATCAAAGGACAAGAAGCTGCAAGCTTGTTCTTTAAAAGGGCTCGGGTA
AGAAGACAGGGCCAACCTTTCTGATGCTTAGGCCCTTCTGACTGATGCTAAGGTCAAGTAACCCC
CTCTGATGCTTAGGTCAGGTAACCTAAAGTTTGAGGGGAATAAATGAAAGAATGAACCGCATCTA
CAAGGTGTTAAAGTACTTTGGTGATGACTTCTTTTAGGCACCGGTCAACCCAGTAACTAGAGATA
GCATAATGAGAAAACATAAGATCGCTAACTCAGGCTTAACTCACAAAGGGACCGTTAGCGAGTGA
AATCGTTCGTTAGCTAAGTGCCATACTCAGGTCCTGCGATAGAATAAATCAAAGGATAACCTTCT
CGCTACGGGAAAGGGATAACCTTACTTTATTTAATAGGCTTCTACTTTAAGTAAGAAAGAGCAAG
ATATGGATCAAAGATAGATAGATTATGGATTGTTTGTTGAACCGA
Right flanking sequence: Indices 93112 -- 93611
GTCTATGACACTACAACAAAACTGCTTGCTCCATGCCGCGCTGGCTTTATGTTTGGCTGCTCCCC
TCCCAATATTGGAATGAAATCATTGAAGCTTCTTCCACACCTACCTACCTATTAGCCATCTATCT
TTAGGGAAGCATGAACCAAGGACGAGCACCTAAGGCCCCCCTCCGGTCCTAGCCGGGGCTATAAA
TAGCGAACGAAGGGGTTTGGGGTAGGCAACTACTTGGAAGCAAGCAGGGAGGATCTATTACCCAG
CTTTATGGCAACTACTTTCGAGTAGGTTTCTTCTCACAGCCGGGGTCACCAAAGCCCAGTCATCC
ACCCATCCATATAGGGATTATAGCCATCCTACTGCACTGCCTTAGATCTCCCCAGTAATCAGCCA
GCATAGAGGCATACATAATTCTTCTCCAGCTGTCTGTCCGTCTGTATCGGTGAAGATTTCTGGTT
CAATGCTGTATCGGAAATCAAGTTCATCGTCATACTCTCTGTGGT
Found at i:93907 original size:17 final size:17
Alignment explanation
Indices: 93871--93908 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
93861 GCATGGCTCA
**
93871 GCTT-GCAGGTGAGATT
1 GCTTGGCAGGTGAGAGG
93887 GCTTGGCAGGTGAGAGG
1 GCTTGGCAGGTGAGAGG
93904 GCTTG
1 GCTTG
93909 TAGGTAGGAG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
16 4 0.21
17 15 0.79
ACGTcount: A:0.16, C:0.13, G:0.45, T:0.26
Consensus pattern (17 bp):
GCTTGGCAGGTGAGAGG
Left flanking sequence: Indices 93371 -- 93870
GCTTTATGGCAACTACTTTCGAGTAGGTTTCTTCTCACAGCCGGGGTCACCAAAGCCCAGTCATC
CACCCATCCATATAGGGATTATAGCCATCCTACTGCACTGCCTTAGATCTCCCCAGTAATCAGCC
AGCATAGAGGCATACATAATTCTTCTCCAGCTGTCTGTCCGTCTGTATCGGTGAAGATTTCTGGT
TCAATGCTGTATCGGAAATCAAGTTCATCGTCATACTCTCTGTGGTCGAACCTCCATAGTTTGGT
TGGTTCAGCATTATTCTCTGTGGTTTACCTAACCCCTCCTATCTTTCTTTCCCATGGATGCCGAT
CGGGGGTTGATGAATGAGGGAGATGAAAAAGCATATATTATATATGTCATTATGCCATCCCACTC
TGATGAATGAGGGAGATGAAAAGCATATATGGGCATATGTCATTATTGACCGATAAGAGAGATAA
TGACATATATAAAGAATGACCAACGGGAAAGGAAGGCATGGCTCA
Right flanking sequence: Indices 93909 -- 94408
TAGGTAGGAGCGTAATGACACATATCGATGCATTCATTCATTATATACGTAATTACGCTTTAGCA
GATCATGCATCTATGGGCATATGTCATTATGCAATCGAGATCTCGAACTAAATGACATATATAAA
GAATGAACCAATCTCTCCTCTCCTTATCAGTCGAGCCGATGGCGGCCTTATTAGTCGAGCGTGCT
TACGCACCCTGACGGACCTAATCAGATCAGTGACAATCTTTCTCACGGAATGACCTATCTCATTC
AGGCAGGGCAGGGATCATGCTTGGATCATTCATTCACCGTAATGACATATATAATGAATGAATGC
ATAATGACATATGCCCATAGCAACATCTGCTATCCACACGTGCCATTTAGGTCACGTAACTAGAG
AGATTTCAAGGTCCGGAGGGTCTTGCGCTTCCTAGTGCAAGGAAAAGGGGATTCGAGCCAACCAA
AGATGTATCTACGGCTGACTTTCGTGAGCGAGCTTGTACCATGTC
Found at i:95480 original size:15 final size:15
Alignment explanation
Indices: 95460--95489 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
95450 ATGCCTTCAT
95460 TAAGGCTTGAAGAAA
1 TAAGGCTTGAAGAAA
95475 TAAGGCTTGAAGAAA
1 TAAGGCTTGAAGAAA
95490 GGATTGATTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.47, C:0.07, G:0.27, T:0.20
Consensus pattern (15 bp):
TAAGGCTTGAAGAAA
Left flanking sequence: Indices 94960 -- 95459
TGTGGGCAGGATGATTTGAACTAAACGAATAGATGCTTCGATTGCTGTATACCGCTTCCCGAAAG
CAGTGCCCTTACCATCTCAGGTTGTAGGGGCGGTCAGGATCGATAGCTCACAGAGGATCAGGAGG
AAGCTAGTCTATCTCCGTCCACTCATGCTTGCATGCCGTCCCTCCCATTGAAATACAATTAGTGG
ATACTTATTGATTGAAATGAAATCAAAATAGTGAGATTGAACCATCCCCAATCATCACGCAATCG
AACCATCACTCACCAATCTTCACTCACACCGACCTACCCGCCATGCAGTCTCTCCCGCCAAATAG
TAGTTATGGCAGGATTAGTTCAGGCAGGAGAAGGATTAGTTCCGCCAAGCAATGCCCACTACTGC
TTCTCTCGCTAGCACTCTCACTCGCACTACCTCCCTCACGGAGGAGTAAGTCATGGCAGTAAAAG
GGGGAATGCGTTCTTGCTGGCTGGCCGTCCCACTCATGCCTTCAT
Right flanking sequence: Indices 95490 -- 95989
GGATTGATTCAAGTACTTTCCCACCTTCAACAATAGCTGGTTCTACTTAAATAGCTGGTCCTACC
TTCGATAGATCGGTCTGGTCTTACCTTGTATGGAAGGTCTGGTAAGACGATCAAAAAGGCTGGTC
CTACCTAGCTTATCGGGTTACTGGCTGGTCCTAAGAAGGTCAAGGAACGTTTCAAGACTAATCCT
TGCCCCCCGGAGGGACAAGCGGCTTCGCACCTTGGGTGGTGTCGTTCTAAGGTCGCGAAGCAGGG
TCTGTCTCTTCTCTAGCGGGGTGATAAGGGAATCCACTAACACACGATGTAGCGATGGTCGTTTT
CAGGCAAGAATCCCAGGCAGGGTCTAGTCTATTTGGTGGCCTAGCAATAGCGTAAGTAAGTGGTG
GGAAATTCCCCACCCACAATTTGAAAGCGCGAAGGTCCGTTCTAAGATTGCTAGTAATCTGTTCT
GCAAAGGTCAAGTCGATGTGGGTGACTCTCCCGGATGAATAGATC
Found at i:96117 original size:18 final size:18
Alignment explanation
Indices: 96064--96117 Score: 53
Period size: 18 Copynumber: 3.2 Consensus size: 18
96054 GTCATGTAGA
96064 TGGGAGCAATAAGGAGAG
1 TGGGAGCAATAAGGAGAG
* *
96082 T---AGTCAAGATGG-GAG
1 TGGGAG-CAATAAGGAGAG
96097 TGGGAGCAATAAGGAGAG
1 TGGGAGCAATAAGGAGAG
96115 TGG
1 TGG
96118 TCAAGCAAGC
Statistics
Matches: 27, Mismatches: 4, Indels: 10
0.66 0.10 0.24
Matches are distributed among these distances:
15 6 0.22
16 6 0.22
17 6 0.22
18 9 0.33
ACGTcount: A:0.35, C:0.06, G:0.44, T:0.15
Consensus pattern (18 bp):
TGGGAGCAATAAGGAGAG
Left flanking sequence: Indices 95564 -- 96063
TCGGTCTGGTCTTACCTTGTATGGAAGGTCTGGTAAGACGATCAAAAAGGCTGGTCCTACCTAGC
TTATCGGGTTACTGGCTGGTCCTAAGAAGGTCAAGGAACGTTTCAAGACTAATCCTTGCCCCCCG
GAGGGACAAGCGGCTTCGCACCTTGGGTGGTGTCGTTCTAAGGTCGCGAAGCAGGGTCTGTCTCT
TCTCTAGCGGGGTGATAAGGGAATCCACTAACACACGATGTAGCGATGGTCGTTTTCAGGCAAGA
ATCCCAGGCAGGGTCTAGTCTATTTGGTGGCCTAGCAATAGCGTAAGTAAGTGGTGGGAAATTCC
CCACCCACAATTTGAAAGCGCGAAGGTCCGTTCTAAGATTGCTAGTAATCTGTTCTGCAAAGGTC
AAGTCGATGTGGGTGACTCTCCCGGATGAATAGATCACGCCCATCATCATAAGGATCTGCATCTC
GGTATGGGTTGGGATCGTCAAGATGAGGGGGAATTGTCATGTAGA
Right flanking sequence: Indices 96118 -- 96617
TCAAGCAAGCGGGTAATGCCAGATCATCATTTAACCTATCGTAGTAGCCGTCGAGGTCTCAACGA
CGCAGGCAGGCAGAGTGCCCTTACTTAGAGGCACCTAGTAGTGATAATACGGCGTAGCAGCGTCT
TTCTAGCGGGTCTAAAGAAGCAAAGCATGATGTGCCTTGTCCCTCGAATCATGGAAACGACGGGT
TTCATATAAGAAACACCCCCTCTCAGAAGCTCTTTCGGATCCATCGGAACCGACCTTGTAGCCCC
CACTAGGTTTATTCGGAGCCAGGACTCACTTTAGAATTTCTATAGACCTTGAAACTCTTATTATT
TCAAATCCTCGTAGCTGCTATCCCGCCTTACATACCGTACCCTTATACTTAAGTGCATGCTACCT
TTTAGTTTTAGACCAGACCTTTTACTTTATGCTGCCAGATGCTGTCAGAACCCTAGGAAATTAGA
TTATGGGGTGCTCCCATTAATTTGATGAACCAGCCAACTACACGA
Found at i:100255 original size:27 final size:27
Alignment explanation
Indices: 100238--100296 Score: 82
Period size: 27 Copynumber: 2.2 Consensus size: 27
100228 AGGACCCTTT
* *
100238 AGGGGGCTCGACTGATAAGGAGAGGAG
1 AGGGGGCTCGACTGATAAGGACACGAG
* *
100265 AGGGGGCTCGACTGATAAGGAGAGGAG
1 AGGGGGCTCGACTGATAAGGACACGAG
100292 AGGGG
1 AGGGG
100297 TCACTCACTA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.29, C:0.10, G:0.51, T:0.10
Consensus pattern (27 bp):
AGGGGGCTCGACTGATAAGGACACGAG
Left flanking sequence: Indices 99738 -- 100237
ATTCATTCAAAAGGTAAGTCGTAAGGTGAAGGAGGAAACAGTAAAGAGAAAGACAAGGTGTATAG
GTCGAGTAAAGGTAAGCGGTACCCCAAGTAAGCATGATTTCAGTAAGTGTTACACTCGTGAATGC
TACAAGTTAAGATCATGAAACCAGCCGGTATAGAAGGGGGGTTGACGCCAGGTGGATAGATGCTC
ATAAGTAAAGGGAAGCAGCTGAGAAGGGCCGGAAGGCGCTCACCTGAGGCCCTACTATTATAATG
GGGGGTGAGGGGATTTCTCGTCAAAGTTCTCAGTGCCCAAGCAAGCCCGTCCACCAAAGGGCCCT
ATATTATTTAGGGGCGGAGCCACTCACTATTCATATGGTGAGGGTGCTAACGCACACTCGACTGT
CCAGGAGAGGGGCGGAGCCACTCACTATTCATATGGTGAGGACCGGTAGGGGCTCGACTGTCAAG
GACCCTTTAGGGTGCGTAAGCACGCTCGACTAATAAGGACCCTTT
Right flanking sequence: Indices 100297 -- 100796
TCACTCACTATTCATATGGTGAGGGTGAGCCTGCCGAACTCTCGACCCCGGGAGAGGGTTTGAAC
GCTCACTCATCATATGGGTGAGGGCCCTTACTTCTTCATAGGGGTCACTCACTATTCATATGGTG
AGGGTGCGTAAGCACACTCGACTGTCCAGGAGAGGGGCGGAGCCACTCACTATTCATATGGTGAG
GGGTTTCTCTTTCATTCCTAAGCAAGTTATGACGATCATCCCACAACTGGTTCCATCGAAACCAT
TGACCCTCGTCTGACCGATAAAGCAAGAAGTAAAACGACCAGCCATGCCATTCAGCAATATATGG
AGCACGGAGCAAGCAAGGCACCTCGTGTTCGATCCACCCAAACTAAAGGCTGGCAGGAATAATAA
AGAACTATAGGGTAGCCCCCCCCTTGGCCCAGCCAGGTTGTGGTAGCAAGTATTTATGAAGGTTG
TAAAAGGTTTCATTCATTTGGCTTGGTAAACCTGGAAGTAAATAG
Found at i:100493 original size:31 final size:33
Alignment explanation
Indices: 100407--100494 Score: 87
Period size: 31 Copynumber: 2.8 Consensus size: 33
100397 TCATAGGGGT
100407 CACTCACTATTCATATGGTGAGGGTGCGTAAGCA
1 CACTCACTATTCATATGGTGAGGG-GCGTAAGCA
* * * *
100441 CACTCGACT-GTC-CA-GGAGAGGGGCG-GAGC-
1 CACTC-ACTATTCATATGGTGAGGGGCGTAAGCA
100470 CACTCACTATTCATATGGTGAGGGG
1 CACTCACTATTCATATGGTGAGGGG
100495 TTTCTCTTTC
Statistics
Matches: 43, Mismatches: 7, Indels: 11
0.70 0.11 0.18
Matches are distributed among these distances:
28 3 0.07
29 7 0.16
30 4 0.09
31 11 0.26
32 7 0.16
33 1 0.02
34 7 0.16
35 3 0.07
ACGTcount: A:0.24, C:0.23, G:0.32, T:0.22
Consensus pattern (33 bp):
CACTCACTATTCATATGGTGAGGGGCGTAAGCA
Left flanking sequence: Indices 99907 -- 100406
GGTTGACGCCAGGTGGATAGATGCTCATAAGTAAAGGGAAGCAGCTGAGAAGGGCCGGAAGGCGC
TCACCTGAGGCCCTACTATTATAATGGGGGGTGAGGGGATTTCTCGTCAAAGTTCTCAGTGCCCA
AGCAAGCCCGTCCACCAAAGGGCCCTATATTATTTAGGGGCGGAGCCACTCACTATTCATATGGT
GAGGGTGCTAACGCACACTCGACTGTCCAGGAGAGGGGCGGAGCCACTCACTATTCATATGGTGA
GGACCGGTAGGGGCTCGACTGTCAAGGACCCTTTAGGGTGCGTAAGCACGCTCGACTAATAAGGA
CCCTTTAGGGGGCTCGACTGATAAGGAGAGGAGAGGGGGCTCGACTGATAAGGAGAGGAGAGGGG
TCACTCACTATTCATATGGTGAGGGTGAGCCTGCCGAACTCTCGACCCCGGGAGAGGGTTTGAAC
GCTCACTCATCATATGGGTGAGGGCCCTTACTTCTTCATAGGGGT
Right flanking sequence: Indices 100495 -- 100994
TTTCTCTTTCATTCCTAAGCAAGTTATGACGATCATCCCACAACTGGTTCCATCGAAACCATTGA
CCCTCGTCTGACCGATAAAGCAAGAAGTAAAACGACCAGCCATGCCATTCAGCAATATATGGAGC
ACGGAGCAAGCAAGGCACCTCGTGTTCGATCCACCCAAACTAAAGGCTGGCAGGAATAATAAAGA
ACTATAGGGTAGCCCCCCCCTTGGCCCAGCCAGGTTGTGGTAGCAAGTATTTATGAAGGTTGTAA
AAGGTTTCATTCATTTGGCTTGGTAAACCTGGAAGTAAATAGTAGGTAGGTGGTAACTATTGATT
GTGAACATAAGACTTGCAGCAATCAAATCCAAGTGGTGATGGGTCCGAGGTACAATAGGAGGGAT
TTGATCAACTGGAACCATCCCACTCATTCACAAAGAGCTCTTCGGGGAATGCACTTAGAATAGGG
TTTTTACCTACCAGAAGCTCTGAGCTCTCCATTATTGATTACTTG
Found at i:101513 original size:21 final size:22
Alignment explanation
Indices: 101487--101531 Score: 74
Period size: 22 Copynumber: 2.1 Consensus size: 22
101477 TCCCCTTATG
101487 TCATGGGAGC-AATTCTTCCTC
1 TCATGGGAGCTAATTCTTCCTC
*
101508 TCATGGGAGCTATTTCTTCCTC
1 TCATGGGAGCTAATTCTTCCTC
101530 TC
1 TC
101532 CTGTTATTAA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 10 0.45
22 12 0.55
ACGTcount: A:0.16, C:0.29, G:0.18, T:0.38
Consensus pattern (22 bp):
TCATGGGAGCTAATTCTTCCTC
Left flanking sequence: Indices 100987 -- 101486
ATTACTTGAGGGCATGGCTTTTCTATCCTGCTTGAGTGGGTGGATGGCAGCTTGTTGGATTATTG
CATGAAGCTGGACAAACCTACCTCATCAAGGCATCAAATGAAGCTTTGGGTGCTGGGCAGAACAT
ACCCATCCATAGCTATGTGCATGGGGATATGGCAAGAAACGAAGTGGCTGGGTCTTAGAGAGAGA
AACCGCATTCAATCGGTCTGAGAGGGATGGATAACCAAATACTGATTCGAGAGAATGAATGATAC
CACTCAAATCCAATCAAAGGTTATACCTATCGGAAGCCTTCCCCCCTATAGTATAGTAGCTCAAA
CCCCCCCATCTATACAAATCAAATGGGTGTAGCAGCATCTGTGACTATGTCTTTTTGGGTATCGG
GTTATGGATGCACTTTCAAGTGACTCATCTGGCTGGCACTGAACTCATTTGGTGGGGGGGAACAA
GAAAGAATGGAAGAACAAAGAAAGCATCTAAGCCTTCCCCTTATG
Right flanking sequence: Indices 101532 -- 102031
CTGTTATTAAGGAACGAGCCTGCTAGCGCATCCTAACCCCTTCTCTATACAAGTTATCGTACAAG
GTCAAGGTAAAAGAAATCCCACTTTGTTACAGAGAAATGCACTTTATCGCATGTTACTCCCAATC
AACGATAGATTCCCTTATATGGGCTCTTATCCTACGTTTCTTTCTACATACCTTTGATGTTTCCT
AACTGCACTGCGTAATTACATAGGTAATATTTAAGGATGAACGAACCCACCCACCATTTAGCGAG
CTCTTTTCAAATCCTTCCTTAAGGTGCGAAGCCGCCAGAGAAGAAATAGGAGGGGCAAGGACCCG
GAGGGGCTTGCGCTTCCTAGGGCAAGGATCCACTTTTGTTCTGTCTGGGCTTATGGAGCAAGAGA
AGGCTTATCTGAAGGGTCAGTCGAGCCTGCTTACGCATCCTTTCAGACGAGATTCCACTCTCGAT
GCATGCCTCTGGAAAACTACCACATGCTCATATATAACTACCACC
Found at i:102264 original size:20 final size:20
Alignment explanation
Indices: 102239--102289 Score: 102
Period size: 20 Copynumber: 2.5 Consensus size: 20
102229 CGCATCCTCT
102239 CCTCTCCTCTCGATGGCGGC
1 CCTCTCCTCTCGATGGCGGC
102259 CCTCTCCTCTCGATGGCGGC
1 CCTCTCCTCTCGATGGCGGC
102279 CCTCTCCTCTC
1 CCTCTCCTCTC
102290 CTTATCAGTC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.04, C:0.49, G:0.20, T:0.27
Consensus pattern (20 bp):
CCTCTCCTCTCGATGGCGGC
Left flanking sequence: Indices 101739 -- 102238
TAATTACATAGGTAATATTTAAGGATGAACGAACCCACCCACCATTTAGCGAGCTCTTTTCAAAT
CCTTCCTTAAGGTGCGAAGCCGCCAGAGAAGAAATAGGAGGGGCAAGGACCCGGAGGGGCTTGCG
CTTCCTAGGGCAAGGATCCACTTTTGTTCTGTCTGGGCTTATGGAGCAAGAGAAGGCTTATCTGA
AGGGTCAGTCGAGCCTGCTTACGCATCCTTTCAGACGAGATTCCACTCTCGATGCATGCCTCTGG
AAAACTACCACATGCTCATATATAACTACCACCATAACAATGACTGGTCTTTCTTCTCTCTCTCT
AGCTAGGAAATCACTCTCATTATATATGTCATTACGGCAGCCAATGAATTGGATTCAAGTTCAAT
TGACTTATTGGGTGGCCCCTCTCAAATAAGTAACTAGCGCTGGTCGAGCCCTGCCGGCCCTTGAT
GCTTATTGGGTGGGGGGCGCTGGTCGAGCGTGCTCCGCATCCTCT
Right flanking sequence: Indices 102290 -- 102789
CTTATCAGTCGAGCCGATGGCGGCCTTATTAGTCGAGCGTGCTACGCACCCTAACGGACCTCACA
CGTTACCTCACCCTTCGGGCCTTTAGTCGAGAGTTCGGCAGGCTCACCCTTATGCCAAAGGACTT
AAGCTAAGACTAAAGCAAGATCTTATGGCAGGTTGATTAATAGGACTTATCGTATGGACCTTACT
CCATGGAACTAACTCCTAAAACTACAGCAAGTGCCTTACTCTATGGCCGGCTAAGATATTATTCT
TATTTGCTTACGCTGGTAATAGTGAGAAAGAGAATTTCTCTTATTTTTATTGCATATAACTAATG
ACAAGACAAGTTCAACTTAGATATGCAAGTCCTAGTTATAGGCGAGTCTCTCAACAACACTCAAT
GTATTTGGAACAACCTATACTCCTCTTCTTATGCCATTCCCATTCAAACTGGAGACACTACTTGC
CAGAGATCAAACTACGTGTAGAATCAGGAAACAAGGAAGAGATAT
Found at i:102268 original size:25 final size:24
Alignment explanation
Indices: 102234--102291 Score: 79
Period size: 20 Copynumber: 2.5 Consensus size: 24
102224 TGCTCCGCAT
102234 CCTCTCCTCTCCTCTCGATGGCGG
1 CCTCTCCTCTCCTCTCGATGGCGG
102258 ---C-CCTCTCCTCTCGATGGCGG
1 CCTCTCCTCTCCTCTCGATGGCGG
102278 CCCTCTCCTCTCCT
1 -CCTCTCCTCTCCT
102292 TATCAGTCGA
Statistics
Matches: 29, Mismatches: 0, Indels: 9
0.76 0.00 0.24
Matches are distributed among these distances:
20 19 0.66
21 1 0.03
24 1 0.03
25 8 0.28
ACGTcount: A:0.03, C:0.50, G:0.17, T:0.29
Consensus pattern (24 bp):
CCTCTCCTCTCCTCTCGATGGCGG
Left flanking sequence: Indices 101734 -- 102233
CTGCGTAATTACATAGGTAATATTTAAGGATGAACGAACCCACCCACCATTTAGCGAGCTCTTTT
CAAATCCTTCCTTAAGGTGCGAAGCCGCCAGAGAAGAAATAGGAGGGGCAAGGACCCGGAGGGGC
TTGCGCTTCCTAGGGCAAGGATCCACTTTTGTTCTGTCTGGGCTTATGGAGCAAGAGAAGGCTTA
TCTGAAGGGTCAGTCGAGCCTGCTTACGCATCCTTTCAGACGAGATTCCACTCTCGATGCATGCC
TCTGGAAAACTACCACATGCTCATATATAACTACCACCATAACAATGACTGGTCTTTCTTCTCTC
TCTCTAGCTAGGAAATCACTCTCATTATATATGTCATTACGGCAGCCAATGAATTGGATTCAAGT
TCAATTGACTTATTGGGTGGCCCCTCTCAAATAAGTAACTAGCGCTGGTCGAGCCCTGCCGGCCC
TTGATGCTTATTGGGTGGGGGGCGCTGGTCGAGCGTGCTCCGCAT
Right flanking sequence: Indices 102292 -- 102791
TATCAGTCGAGCCGATGGCGGCCTTATTAGTCGAGCGTGCTACGCACCCTAACGGACCTCACACG
TTACCTCACCCTTCGGGCCTTTAGTCGAGAGTTCGGCAGGCTCACCCTTATGCCAAAGGACTTAA
GCTAAGACTAAAGCAAGATCTTATGGCAGGTTGATTAATAGGACTTATCGTATGGACCTTACTCC
ATGGAACTAACTCCTAAAACTACAGCAAGTGCCTTACTCTATGGCCGGCTAAGATATTATTCTTA
TTTGCTTACGCTGGTAATAGTGAGAAAGAGAATTTCTCTTATTTTTATTGCATATAACTAATGAC
AAGACAAGTTCAACTTAGATATGCAAGTCCTAGTTATAGGCGAGTCTCTCAACAACACTCAATGT
ATTTGGAACAACCTATACTCCTCTTCTTATGCCATTCCCATTCAAACTGGAGACACTACTTGCCA
GAGATCAAACTACGTGTAGAATCAGGAAACAAGGAAGAGATATGT
Found at i:103337 original size:16 final size:16
Alignment explanation
Indices: 103316--103347 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
103306 TGCTGGAGTT
*
103316 AGTTCCTTAACATGGG
1 AGTTCCTGAACATGGG
103332 AGTTCCTGAACATGGG
1 AGTTCCTGAACATGGG
103348 GAGCTGAAGC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (16 bp):
AGTTCCTGAACATGGG
Left flanking sequence: Indices 102816 -- 103315
TAGGAGACTATGGCTAGTACCTTACTTACGTTACTGGGACACATGAGAATGAATTCATAGATTGT
GTCTTATATATGCCGGTATCAAATGTATGAAGTCCACATGCACTAAGAACGACTAGCTTAAGTCC
ATTTGTTCTTTAACTACTGGCAGCCGTAGTGTAAGTCCCATAGCAATTAGCCTTACAGACACTAG
CGCTTAGTCCATGCACTATGCACTATAATAAGCCTTAAGCCTTTGAGTTTAAGGCCGAGAAAGGT
CTTTGCCGGACTGCTTGACTAGCTTCAGAATGGGCCCTATGAACAACTGTAAGTTCTCTATTTAT
TAAGTCAGCTGTAGTCCATGACAATAAGCCTTAATTGCCAGACCTTCAATCACTGCATGAAGAAG
AAGCCATGATTGCATTCCACTTGTTGTTGTTTATAAAACAAGTGAAAAACTATATGCGAGTACAG
GTTCTATGTCTCTATGCATGCTCGTATATGAACCCTGCTGGAGTT
Right flanking sequence: Indices 103348 -- 103847
GAGCTGAAGCCGCTGACTCCTACTAGATATGGAATCCTGCCACGAGATAAACGTACGGAAATGGC
CATGTTCTGTTCAGAATAAATCCATTTAGGTGCCAAGATGAGTTGGTTTCATCGAACCCATCAAA
AAGAGATTATGACAAAGGAACTATGCCCAATGAGAAGGTTTGGGGAAGTCTGTCCCATCCCAAAT
GGACCAGTGAAACGAGACTCTATGCCATGCTAATATAGCATAGATCCTAGGACTCTTTTACAACA
ACTAGGTTTTCTTACACAACGACATACACGGGGATTCTTTCACATGGGGAGAACTGGTGGAGCTG
TTTGAGGTGCCTTGCCCGAACCCGCTTCAGCTTCAGCTCGCCTATATTCCGGGAGCATATTAGTG
GTGTTAATATAAGTTAGTAATAGCATTTATTTCCACTTGTTTGTGTCCCCTGAGCTCCAGCGAAG
AAGCAGTTGTGTTCATTATTTGAAAGAAATAGGAGGTTACTTAGT
Found at i:104304 original size:46 final size:46
Alignment explanation
Indices: 104216--104327 Score: 143
Period size: 46 Copynumber: 2.4 Consensus size: 46
104206 GCCAGTAAGA
* * * *
104216 GCCAGAAGGTCAGACGAGAGCCAGTGGTCATTGCCGGGAGGTCATT
1 GCCAGAAGGCCAGCCGAGAGCCAGTGGTCATTGCCAGAAGGTCATT
* * *
104262 GCCATAGGGCCAGCCGAGAGCTAGTGGTCATTGCCAGAAGGTCATT
1 GCCAGAAGGCCAGCCGAGAGCCAGTGGTCATTGCCAGAAGGTCATT
* *
104308 GTCAGAAGGTCAGCCGAGAG
1 GCCAGAAGGCCAGCCGAGAG
104328 ACAAGCATTG
Statistics
Matches: 55, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
46 55 1.00
ACGTcount: A:0.25, C:0.22, G:0.36, T:0.17
Consensus pattern (46 bp):
GCCAGAAGGCCAGCCGAGAGCCAGTGGTCATTGCCAGAAGGTCATT
Left flanking sequence: Indices 103716 -- 104215
ATATTCCGGGAGCATATTAGTGGTGTTAATATAAGTTAGTAATAGCATTTATTTCCACTTGTTTG
TGTCCCCTGAGCTCCAGCGAAGAAGCAGTTGTGTTCATTATTTGAAAGAAATAGGAGGTTACTTA
GTTGGGCGAAAGCGAAGAAGCTTGCCAGGTAAGGTCAAGTCCCATACCACTTGTGCTTTCCTCTG
AGCTCCAGCAGAGTGTGTGTGAGGTGCACCCATTCCCCTTACTCCTCCATCCATTCCAAGTTTCC
ACCAGATGAGAGAGAAGGACCCGTTCAATCCATACCTCGTGAAATCCATACCCGAGAATGAGTTC
CCCCATACCCTCACTTACCGCTACGGAACATTGGAATGTTCCTACCTGGGCTGGACTGAACGGTT
CGGAACGATGGAAGGAATGAAGAGGCGTTACATACGTGAATTCACAAGAGGTTCATACGCCAGTC
TTACATAGCGATCATTGCCAATCATATCAGTTATAGCCAGTAAGA
Right flanking sequence: Indices 104328 -- 104827
ACAAGCATTGCCAGTCATTGTCAGGAGGTCAGAGCCAATCATACCAGTCATTGCCAGCCGGTCAT
TGTCAGAAGTCATTGCCATATAGCTAGTCTTCTGGGAGGGTTGAGAGGTATTCCGGGAAGGGATT
TCTTTATTTGATTGATGAGGATTACCCTATGAGTCAACCGATCGAGCCAGAACATTGCAGGCATC
TAGGGACAAAGGCAGGGAACACGTTGCCAACAATGCGAGGAAGTGCACCGATGAGTGAGTGATTT
GATTGATGGCCAGTTGAGAGCAGCGGTGGTCCGGTCCCACGGACGGAGGGATGGTGGCGAGGACA
GACAGACATGTGGAAGGGACAGCGAGAGGCGGGGCAGGGTTAAAGGAATGATTGATTGAGGAGCT
GGATGATGAGTCTTACCCACCAAGTTACCCCCATCGATCCACAGTTATATATTCTCGATCCACCG
AACGAGATGACATAACACCTAGCCCTATATTTAATGAGACGGAAC
Found at i:104306 original size:14 final size:14
Alignment explanation
Indices: 104287--104319 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
104277 GAGAGCTAGT
104287 GGTCATTGCCAGAA
1 GGTCATTGCCAGAA
*
104301 GGTCATTGTCAGAA
1 GGTCATTGCCAGAA
104315 GGTCA
1 GGTCA
104320 GCCGAGAGAC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.24
Consensus pattern (14 bp):
GGTCATTGCCAGAA
Left flanking sequence: Indices 103787 -- 104286
CTGAGCTCCAGCGAAGAAGCAGTTGTGTTCATTATTTGAAAGAAATAGGAGGTTACTTAGTTGGG
CGAAAGCGAAGAAGCTTGCCAGGTAAGGTCAAGTCCCATACCACTTGTGCTTTCCTCTGAGCTCC
AGCAGAGTGTGTGTGAGGTGCACCCATTCCCCTTACTCCTCCATCCATTCCAAGTTTCCACCAGA
TGAGAGAGAAGGACCCGTTCAATCCATACCTCGTGAAATCCATACCCGAGAATGAGTTCCCCCAT
ACCCTCACTTACCGCTACGGAACATTGGAATGTTCCTACCTGGGCTGGACTGAACGGTTCGGAAC
GATGGAAGGAATGAAGAGGCGTTACATACGTGAATTCACAAGAGGTTCATACGCCAGTCTTACAT
AGCGATCATTGCCAATCATATCAGTTATAGCCAGTAAGAGCCAGAAGGTCAGACGAGAGCCAGTG
GTCATTGCCGGGAGGTCATTGCCATAGGGCCAGCCGAGAGCTAGT
Right flanking sequence: Indices 104320 -- 104819
GCCGAGAGACAAGCATTGCCAGTCATTGTCAGGAGGTCAGAGCCAATCATACCAGTCATTGCCAG
CCGGTCATTGTCAGAAGTCATTGCCATATAGCTAGTCTTCTGGGAGGGTTGAGAGGTATTCCGGG
AAGGGATTTCTTTATTTGATTGATGAGGATTACCCTATGAGTCAACCGATCGAGCCAGAACATTG
CAGGCATCTAGGGACAAAGGCAGGGAACACGTTGCCAACAATGCGAGGAAGTGCACCGATGAGTG
AGTGATTTGATTGATGGCCAGTTGAGAGCAGCGGTGGTCCGGTCCCACGGACGGAGGGATGGTGG
CGAGGACAGACAGACATGTGGAAGGGACAGCGAGAGGCGGGGCAGGGTTAAAGGAATGATTGATT
GAGGAGCTGGATGATGAGTCTTACCCACCAAGTTACCCCCATCGATCCACAGTTATATATTCTCG
ATCCACCGAACGAGATGACATAACACCTAGCCCTATATTTAATGA
Found at i:105900 original size:14 final size:14
Alignment explanation
Indices: 105881--105917 Score: 74
Period size: 14 Copynumber: 2.6 Consensus size: 14
105871 TTATACATCG
105881 TATTGGGAGCTTCA
1 TATTGGGAGCTTCA
105895 TATTGGGAGCTTCA
1 TATTGGGAGCTTCA
105909 TATTGGGAG
1 TATTGGGAG
105918 TGATAAAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.22, C:0.11, G:0.32, T:0.35
Consensus pattern (14 bp):
TATTGGGAGCTTCA
Left flanking sequence: Indices 105381 -- 105880
ATAGCCAGTAATAGCAGAGCTAAAAGCACCAGAGGCAGCATAGGTAGTAGATCCAGTAAAAGCAA
GGGTGTATGAACCAGTAGATTCAGTAGTTGGTTATGTATATGAAGCAGAAGTAGATTATGCTGTT
GACTGAGCAGATTATTCAGATGGCTAAAAAGCAAGAGCATAATCTGCCCTATCTTCATTCGCTCT
GGGCGTCATATCCTTGACCATCGCATGCGGCTCTCTCTCCCTTACTTATGAGGGGGGCCTGCAGC
CTCGGCTTCATCTCCTTCTTTTCGATGGAGGTAAGGACCGTGTGTTCTGTATCGGTAAGTGAGTG
GTAGATTCGAGTTTATAGGGGGGAGGATATATTTGGTTCGAGGTTCGATAAAATGGGGGCTTTAG
ATTAGACCTTGCATTAGGACGTGAGATTTCATCATATTGATACGTGAACTTAGCCCCCGATGGGT
ACGAAAGATTAGCCCCTTGTATTGGGAAGGATAGATTATACATCG
Right flanking sequence: Indices 105918 -- 106417
TGATAAAAATGAAAGTAGAAATAAAGCTAAGCATCGAATCAACATTTGTATCGAAAACAACCTAC
CTGATTGAGACTTGGCATCAACTGGATTGAGTACGGGCATCAAAACACCTGAATCGAGTGTCTCA
ACTCTTGGCTATCGTTGACCTCCTATCCTGGGAATGAGGACTGTGTCTGGCTGGCTTGCGGGGTA
TGTGTGCTGCTATGGCCATCCCTTCCCGTCCCGGTGGCTGTGTCGTGTGTGGAAGGTGACTTGGC
ATATATGTTACTATGTTGGGTGGGTCTATGTGAGTCGGCTCTGTCAGTTGGCCTTAATCCTCTTG
GCCGGTGGTGATGTGCGCTGTCAAGAACGGTAAGGTGGGTCCCTTTAAATGGTTATAGATCGTAC
ACGGAGAGGCTCTCCTCGGAAGAGGATCAAGTTGGCCCCGGTTTCCCTACTATAGAAAGGGGTGG
GACGCATCCGAAGGGAAGAAGTGGGATAGCATAGGCTTTACCAAT
Found at i:108026 original size:13 final size:13
Alignment explanation
Indices: 108008--108036 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
107998 AATGAGGATA
108008 CCCTGTTAAAGAG
1 CCCTGTTAAAGAG
108021 CCCTGTTAAAGAG
1 CCCTGTTAAAGAG
108034 CCC
1 CCC
108037 CGGTAAAAGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.28, C:0.31, G:0.21, T:0.21
Consensus pattern (13 bp):
CCCTGTTAAAGAG
Left flanking sequence: Indices 107508 -- 108007
ACAAGGGGCAGCTACTCAATCGGGATACTCTATGGGACTACAGGTCACAGGGGACTAATCCACAG
GGAGGAGCAGAGCTACGGGGCACAGGTATGGCACTAATCCACAGGGAGGGGCATTTACAGTTCAC
CAAGAAAATATCATTCTCACATAGTCAATGTAAGTCAGCCGAGAGTCCATCAGTCACAGGATGTG
CCGATAGACACAGTAAGGAGGTCCCAATTACCGCTAGTTGATGATGCAGTCCAATTCACTCGATG
CCGGTACTCGAAGACAAGAATTGATCCAAGGGTCAATTCTTTTACTCTATGCTTTTACTCTCTAG
ATGGATGGTGTATCTTAATGATGCTACTTGATGGCCGGGACTCGATGCCAAGTGTTGATCGGCCG
CCGGGCAAGACCCCTAAGCAGCAGCCAGCAGGAGATCGATAAATAAGGTTGTAAGACGGTTACTA
AATAGGAGCCCCGGTAAATATGAGGAGCCCTGTCGAATGAGGATA
Right flanking sequence: Indices 108037 -- 108536
CGGTAAAAGAAGAAGCGCTGTTTTAAGAGGAGCGCTTTAAAGAAAGAGGAGCGATGGCGGCCTTT
AGTCGAGAGTTCGCTACCTCTCCTTTAGTCGAGAGTTCGGCAGGCTCACCCTCACCCTGGTGACA
TGACTTACACTACGGAACCACCACCTATGAATGGTTCCTACCTGGGAGGTGCGAAATCAACATGA
CTTACCGCACTTACTGACTCGGGTCGGGGGACCTCCCACTCGTCTAGAGAGCCCCGTAGAGAAGA
GCCCCTAGTGTGATAAGCCCTAGTAGAAGCCCTATAATTTGTTTCTCTGGTCGTAGATATGCGAG
TCCAAGTGGAAACGTAGATATGGCGAGAGAGTTATTCTGTTCTAACTAAACTCTGGATCTTCCGC
TTAAAACTAACTGGAGCTTTCACTATAAGGAGTGCATGGGACTAAAGCTAAGAACTAAGAATAGA
GAGAATGAGAAAGATCATTTATTCTCTCTGGACTCTAGCTTTCAC
Found at i:116041 original size:16 final size:16
Alignment explanation
Indices: 116020--116052 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
116010 ATATGCCTAA
116020 GACCCCTACAAATAAG
1 GACCCCTACAAATAAG
116036 GACCCCTACAAATAAG
1 GACCCCTACAAATAAG
116052 G
1 G
116053 GGGGCGAGGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.42, C:0.30, G:0.15, T:0.12
Consensus pattern (16 bp):
GACCCCTACAAATAAG
Left flanking sequence: Indices 115520 -- 116019
TGAGAGTCGCAGGTTACAAAGAGCCATTCCTCCCTCATTCACTTAGGTTGGTAGCTTCTATGTAA
GCTTCCTTTGATTGAGATTTGCTTTCATTTCAGTTCCTTTGCATTTCAAGCTAGAATAACATGAA
GTCTTGAAGACATATAACCATAACCCTTCACGTATACGTACATCCTCCATCCTTTCAAGTGAGTC
TCTTTCTTTATTATAGTAGTGCCCCCTAAGCAGCTGGTTTTCTAATGCCTCGCAACAAGCTTCAT
CAGGAGGTGGGGACCGGAGCAATATACACATTTTCTTATTAGGCCAAGAACCTTTATTCCTTCAA
GGTAAGAACAAATCGGGTGAGACCGAAACCTGCCTAAACCCCGTTATGCTGCCACCTGCCTGATT
GGATGGATTAATGAAAGGATGGAAGGATGGAATCACCTTTCATGCCATAATTCATCAATTTGGCC
TAATAACACCGCTACTTCTTTACCCCGATGGATCAATATGCCTAA
Right flanking sequence: Indices 116053 -- 116552
GGGGCGAGGTACGTTAAGTGACTCAGCACCTCCTTGCCACTAGGAAAGCGCAAGCCCCTCCGGAA
CCTTGTGTTTCCCATGGGATCACTGTAGGAGAAAACCAATTGATTAGTCCCATTGGCTTATTCCC
TTCTCTTATCTCTTATTTCCTTTCCTATTTCTATCTCTTCCTATCTCTTATCTCCTTTATTTTCC
TTTCCTTTCCCCCTTCCCCTCCCTAACCCCCTCCCTAGCCCTCGCTTCCGCTTACGCTTCCGACT
CCCATCCTTACCATATGATCCTCTGATTGTCTGAACCTAATCTCTGACAATGATCCTTTCCTTTG
TTCGCATGAAACTTTTCCCTGGTTTTTTCCAAAAAAAAGAGAACAACACCTTCTTGGAAGGCGAC
TACTTGCCTTTTCTCTCTCTGAAAGAGCCCATCCGCAAAGGATCCACTCTCTGAAAGAGAGAAAC
ACCTATCCCCCTACCTATCTCTGAAAGAGCGATCCGCAAAGATCC
Found at i:116225 original size:16 final size:17
Alignment explanation
Indices: 116189--116236 Score: 53
Period size: 16 Copynumber: 2.8 Consensus size: 17
116179 TCCCTTCTCT
*
116189 TATCTCTTATTTCCTTTCC
1 TATCTCTTATCT-C-TTCC
*
116208 TATTTC-TATCTCTTCC
1 TATCTCTTATCTCTTCC
116224 TATCTCTTATCTC
1 TATCTCTTATCTC
116237 CTTTATTTTC
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
16 9 0.36
17 7 0.28
18 4 0.16
19 5 0.20
ACGTcount: A:0.12, C:0.31, G:0.00, T:0.56
Consensus pattern (17 bp):
TATCTCTTATCTCTTCC
Left flanking sequence: Indices 115689 -- 116188
ACATCCTCCATCCTTTCAAGTGAGTCTCTTTCTTTATTATAGTAGTGCCCCCTAAGCAGCTGGTT
TTCTAATGCCTCGCAACAAGCTTCATCAGGAGGTGGGGACCGGAGCAATATACACATTTTCTTAT
TAGGCCAAGAACCTTTATTCCTTCAAGGTAAGAACAAATCGGGTGAGACCGAAACCTGCCTAAAC
CCCGTTATGCTGCCACCTGCCTGATTGGATGGATTAATGAAAGGATGGAAGGATGGAATCACCTT
TCATGCCATAATTCATCAATTTGGCCTAATAACACCGCTACTTCTTTACCCCGATGGATCAATAT
GCCTAAGACCCCTACAAATAAGGACCCCTACAAATAAGGGGGGCGAGGTACGTTAAGTGACTCAG
CACCTCCTTGCCACTAGGAAAGCGCAAGCCCCTCCGGAACCTTGTGTTTCCCATGGGATCACTGT
AGGAGAAAACCAATTGATTAGTCCCATTGGCTTATTCCCTTCTCT
Right flanking sequence: Indices 116237 -- 116736
CTTTATTTTCCTTTCCTTTCCCCCTTCCCCTCCCTAACCCCCTCCCTAGCCCTCGCTTCCGCTTA
CGCTTCCGACTCCCATCCTTACCATATGATCCTCTGATTGTCTGAACCTAATCTCTGACAATGAT
CCTTTCCTTTGTTCGCATGAAACTTTTCCCTGGTTTTTTCCAAAAAAAAGAGAACAACACCTTCT
TGGAAGGCGACTACTTGCCTTTTCTCTCTCTGAAAGAGCCCATCCGCAAAGGATCCACTCTCTGA
AAGAGAGAAACACCTATCCCCCTACCTATCTCTGAAAGAGCGATCCGCAAAGATCCCACTCTCTG
AAAGAAGAGAACAACCTATCTCACGGAACGCACTTCTGAAAGAGAGAACACCTATCTTTCTAACG
GAACGCAACTCTCTGAAAGAAAAGAACACCTATCTCTCCCCTATTCTTTTCTTTTCTTCTCATTG
AAGACGGGCTTAAATATCGGACCAACCTGAAGAAGCTACGTTCTT
Found at i:116632 original size:40 final size:39
Alignment explanation
Indices: 116553--116661 Score: 143
Period size: 43 Copynumber: 2.7 Consensus size: 39
116543 GCAAAGATCC
116553 CACTCTCTGAAAGAAGAGAACAACCTATC-TCACGGAACG
1 CACTCTCTGAAAGAAGAGAAC-ACCTATCTTCACGGAACG
116592 CACT-TCTGAAAG-AGAGAACACCTATCTTTCTAACGGAACG
1 CACTCTCTGAAAGAAGAGAACACCTATC-TTC--ACGGAACG
*
116632 CAACTCTCTGAAAGAAAAGAACACCTATCT
1 C-ACTCTCTGAAAGAAGAGAACACCTATCT
116662 CTCCCCTATT
Statistics
Matches: 62, Mismatches: 1, Indels: 11
0.84 0.01 0.15
Matches are distributed among these distances:
36 7 0.11
37 7 0.11
38 10 0.16
39 4 0.06
40 9 0.15
41 3 0.05
42 9 0.15
43 13 0.21
ACGTcount: A:0.39, C:0.27, G:0.16, T:0.19
Consensus pattern (39 bp):
CACTCTCTGAAAGAAGAGAACACCTATCTTCACGGAACG
Left flanking sequence: Indices 116053 -- 116552
GGGGCGAGGTACGTTAAGTGACTCAGCACCTCCTTGCCACTAGGAAAGCGCAAGCCCCTCCGGAA
CCTTGTGTTTCCCATGGGATCACTGTAGGAGAAAACCAATTGATTAGTCCCATTGGCTTATTCCC
TTCTCTTATCTCTTATTTCCTTTCCTATTTCTATCTCTTCCTATCTCTTATCTCCTTTATTTTCC
TTTCCTTTCCCCCTTCCCCTCCCTAACCCCCTCCCTAGCCCTCGCTTCCGCTTACGCTTCCGACT
CCCATCCTTACCATATGATCCTCTGATTGTCTGAACCTAATCTCTGACAATGATCCTTTCCTTTG
TTCGCATGAAACTTTTCCCTGGTTTTTTCCAAAAAAAAGAGAACAACACCTTCTTGGAAGGCGAC
TACTTGCCTTTTCTCTCTCTGAAAGAGCCCATCCGCAAAGGATCCACTCTCTGAAAGAGAGAAAC
ACCTATCCCCCTACCTATCTCTGAAAGAGCGATCCGCAAAGATCC
Right flanking sequence: Indices 116662 -- 117161
CTCCCCTATTCTTTTCTTTTCTTCTCATTGAAGACGGGCTTAAATATCGGACCAACCTGAAGAAG
CTACGTTCTTTTCAAAATTGGCCAGATTCTAGGTGGTCTTTAGAGGAGAAATTTCTCGATATATT
ATATATGCTGCACCAGTTTGAAATTCAAGGATGTTCTTCTTTTTCAATGTGTTAACCAAACCAAG
GTGCGAAAGAAGCTCCCACCGCGTTCCGCCTGTGCCTTTCTTTTTCAATGGAACCAAACAAGATT
GCCTTCTTTTGTCAGTCAATGCCCTTCACCATATGAATAGTGAGTGTGCTAACGCACCCTCTCCC
CTCCTCTAAAAAGTAACCAAAGGCAGTCGAGTGTGGTTACGCACCCTTCACCATATGAATAGTTG
AGTGGCTCCGCCCCTAAGTCATATTGGGCCTTTCTAATGCGGCCAGCCTTCATATTCATATATTA
TATTATGTCATTACGGTCATGATCGAATTCATACCGATCTTCCTG
Found at i:118235 original size:24 final size:24
Alignment explanation
Indices: 118203--118274 Score: 144
Period size: 24 Copynumber: 3.0 Consensus size: 24
118193 ATACTCGATT
118203 CAGGTTGGTAGTCGATCCCAGCAG
1 CAGGTTGGTAGTCGATCCCAGCAG
118227 CAGGTTGGTAGTCGATCCCAGCAG
1 CAGGTTGGTAGTCGATCCCAGCAG
118251 CAGGTTGGTAGTCGATCCCAGCAG
1 CAGGTTGGTAGTCGATCCCAGCAG
118275 GGAGACCATG
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 48 1.00
ACGTcount: A:0.21, C:0.25, G:0.33, T:0.21
Consensus pattern (24 bp):
CAGGTTGGTAGTCGATCCCAGCAG
Left flanking sequence: Indices 117703 -- 118202
TCGGGTCCTTGCACTAGGAAGCGCAAGCCCCTCCGGGTCCTTGCCCTCAAATTCTGTTTCGAGAA
AATAAGATGAATGCCCCACCTCACGGACGAGACCCCATTGCCCCAAACCCGACTACCTTAATCTA
CCAATCACATATGGTGATCCCCTTCCCTACCACCGGCCGGGTATATTGCCAACAGAGTGCACAGA
AAGAAGAGATGGATAACCCTAAACTGGATACAATGAAAATAAGAAATTGGTACCCCACATATTCT
TTACGCACCTTTTCAACCTTTCCACTCCACACCCCGAGCTGGATACCCGGAAACTGGTTCGAGCC
AATCAAATGGATTTTCTTCTTACTAAACATTGCCTTTTGAGAGCATTTACCTTGTTTAGCCGATT
CGATTGACTGGTTTCGATCCCAGGATTTCATGCAAGTACTCTATGCTGACACTCAATGCCAGGTG
TGCTGTAGATCCCAGAGTTGATACACTCGATACCAATACTCGATT
Right flanking sequence: Indices 118275 -- 118774
GGAGACCATGACAGTCATAGATCGGGGATTAACAGTTCAAACAATGTTATGCCTTACTTACAATG
CACCCGTTTAGGATCGATCTTGACAGACAGACACATGGTTCTTTAACGCTAGGAAGGAAGGTTGG
GCCACAAAGCGAGCGAAGTGGAGCTTAATAGTGATTTTTGATTGATTGATTGATAGGACCCATCT
TACAGGAAAGGCGTATCCATTATTCACCACGTCCCCATCATTTACTGACAGACTAATTAGCTTCT
TACTTGATCCTTATCTCACGTCCCCCTCATTCCCAGATTCAAGCCCAATCATACCCATACATACT
AATTAGCCTTCTTACTTGATCTTAGCGCTCACGTCCCCATCAACTCCACATCTCACGGCCCCATC
GAGGTCTAAGCTCACTCCCCATCGAGGGCTAATATAGTTCTACCAATGTTCTCTACCCTCGAAAC
TTCCCTCTATCTCCACCTCTCATAGCTGGTCATTGCCTCAGGGTG
Found at i:118678 original size:24 final size:23
Alignment explanation
Indices: 118651--118696 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
118641 AACTCCACAT
*
118651 CTCACGGCCCCATCGAGGTCTAAG
1 CTCAC-GCCCCATCGAGGGCTAAG
*
118675 CTCACTCCCCATCGAGGGCTAA
1 CTCACGCCCCATCGAGGGCTAA
118697 TATAGTTCTA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 15 0.75
24 5 0.25
ACGTcount: A:0.22, C:0.39, G:0.22, T:0.17
Consensus pattern (23 bp):
CTCACGCCCCATCGAGGGCTAAG
Left flanking sequence: Indices 118151 -- 118650
CCAGGTGTGCTGTAGATCCCAGAGTTGATACACTCGATACCAATACTCGATTCAGGTTGGTAGTC
GATCCCAGCAGCAGGTTGGTAGTCGATCCCAGCAGCAGGTTGGTAGTCGATCCCAGCAGGGAGAC
CATGACAGTCATAGATCGGGGATTAACAGTTCAAACAATGTTATGCCTTACTTACAATGCACCCG
TTTAGGATCGATCTTGACAGACAGACACATGGTTCTTTAACGCTAGGAAGGAAGGTTGGGCCACA
AAGCGAGCGAAGTGGAGCTTAATAGTGATTTTTGATTGATTGATTGATAGGACCCATCTTACAGG
AAAGGCGTATCCATTATTCACCACGTCCCCATCATTTACTGACAGACTAATTAGCTTCTTACTTG
ATCCTTATCTCACGTCCCCCTCATTCCCAGATTCAAGCCCAATCATACCCATACATACTAATTAG
CCTTCTTACTTGATCTTAGCGCTCACGTCCCCATCAACTCCACAT
Right flanking sequence: Indices 118697 -- 119196
TATAGTTCTACCAATGTTCTCTACCCTCGAAACTTCCCTCTATCTCCACCTCTCATAGCTGGTCA
TTGCCTCAGGGTGCGGTCATTCCCATAGCAGCTTGTCATTTACAGTCTCATTGCTTTAAGCTCTA
GTCAGTGCCAAGTAGTCAGTGCAACCAGTCATAGTCCAGTCATATATTGCCCCGATCATAGCCAG
GAGGTCCTTGCCAGCCGGGAGTCATAAGCCGGGAGTCCTTGTCATACTGCCCAACTGATAAGGAA
CCTACGGGATGACACTTACCGCGACGGAACCGTCAGGTTCCTACCCCGAGTGGATGCATGGAATG
ATTATGCCTTACATATGTTAATTCACTTTTCGAGGACCCGCCAGACATAGTCCCACCCTAGCCAG
ACATAGAACTCTACCCTCTACCTATACAGAACCATATATCTCTACCTCGAACTCCTCGACCTCGA
AATGGAACCATGGGAATGTTACTACATTCGCTGACGGCCTTTACC
Found at i:120772 original size:20 final size:20
Alignment explanation
Indices: 120747--120786 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
120737 TCCCTCCCGA
120747 CTTACTCGATCTTCTCTTTC
1 CTTACTCGATCTTCTCTTTC
120767 CTTACTCGATCTTCTCTTTC
1 CTTACTCGATCTTCTCTTTC
120787 ATCTTTCCTC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.10, C:0.35, G:0.05, T:0.50
Consensus pattern (20 bp):
CTTACTCGATCTTCTCTTTC
Left flanking sequence: Indices 120247 -- 120746
AGATCCGTCTTTCACGTTCGAGGAATAGGAAGATCAATTTTTTCGGAGGATCCGGCCAACAACCA
GATCGTGTAGTAATAATGAATGCAGATAGGGAGTCCTCGGTCATACTCGAAGCTGATCGATTACA
AATACCTATCGTATCTTTGGTGGATTCGAATATCCCATTGGGATTATATAGAGGAATAACTTATC
CCATTCCAGCGAATGATTCTATACAGTTCGTATATCCATCTCGTAATTCGATCACGAAAACAGTT
CCTCCTGAACGGGGAAAAATGCAATGGATGAAGGAGGGGAGAACGACTCATCGATCAACTTCTTC
CAATGAGAATTACCATTGCATGCACCAATCTACAAGTCGATGAGATCGGTCGAGTGGTCCCAGTT
GGAGATGGGTGTCTGTCTATGGATTGAACAAGATTCCCCATTTGGTTGGAACACCGCTGGTTCGT
TCCTAATCGTGGTGGTCGGTACACAGCAGCCAACGTCCCTCCCGA
Right flanking sequence: Indices 120787 -- 121286
ATCTTTCCTCGACTTACTCCTGTATCAATACGTTACGCCACCCTCGAAGGTAGAACGAAGATCGG
ATAGCTTATGCTCTTGCCCAAGCGACCGTGATCCTCTTCCTGGCCTGAAGCTTCCTCCTAGGCAG
AGCCCCCGCAAGCAATCCAGCCCAGCTTCGATCTTGATCTCCATTCATCTCCTCTCATTCATCAA
CCCCCGATCGGCACCTACCTTATGGATGGATGCCGCTTGCCGCCAACCTTTCATGATTCGATCAA
ACCTTTAGTTGATTCGATCAAACCTTTAGTTGATTCGACCAACCTTGAAAAGAACGTTAGCTTAG
AGGTAGGCTATACCTGAAAACCGGAGATAAAGAGAAAACCTTAAAACCGTAGCAACACGTGAAGT
ATTTGATGCTCCGGAGCCGCCTTATAGAGTTGACCCAAGGTCCCTTTCGAAATGCCAACCTTGCA
GCGTAAGGATCTTCAAGCTCTATTGTAGTTCCACACATCAATATA
Found at i:121051 original size:20 final size:20
Alignment explanation
Indices: 121026--121084 Score: 84
Period size: 21 Copynumber: 2.9 Consensus size: 20
121016 GCTTGCCGCC
121026 AACCTTTCA-TGATTCGATCA
1 AACCTTT-AGTGATTCGATCA
121046 AACCTTTAGTTGATTCGATCA
1 AACCTTTAG-TGATTCGATCA
121067 AACCTTTAGTTGATTCGA
1 AACCTTTAG-TGATTCGA
121085 CCAACCTTGA
Statistics
Matches: 37, Mismatches: 0, Indels: 3
0.93 0.00 0.08
Matches are distributed among these distances:
19 1 0.03
20 7 0.19
21 29 0.78
ACGTcount: A:0.29, C:0.20, G:0.14, T:0.37
Consensus pattern (20 bp):
AACCTTTAGTGATTCGATCA
Left flanking sequence: Indices 120526 -- 121025
TGCAATGGATGAAGGAGGGGAGAACGACTCATCGATCAACTTCTTCCAATGAGAATTACCATTGC
ATGCACCAATCTACAAGTCGATGAGATCGGTCGAGTGGTCCCAGTTGGAGATGGGTGTCTGTCTA
TGGATTGAACAAGATTCCCCATTTGGTTGGAACACCGCTGGTTCGTTCCTAATCGTGGTGGTCGG
TACACAGCAGCCAACGTCCCTCCCGACTTACTCGATCTTCTCTTTCCTTACTCGATCTTCTCTTT
CATCTTTCCTCGACTTACTCCTGTATCAATACGTTACGCCACCCTCGAAGGTAGAACGAAGATCG
GATAGCTTATGCTCTTGCCCAAGCGACCGTGATCCTCTTCCTGGCCTGAAGCTTCCTCCTAGGCA
GAGCCCCCGCAAGCAATCCAGCCCAGCTTCGATCTTGATCTCCATTCATCTCCTCTCATTCATCA
ACCCCCGATCGGCACCTACCTTATGGATGGATGCCGCTTGCCGCC
Right flanking sequence: Indices 121085 -- 121584
CCAACCTTGAAAAGAACGTTAGCTTAGAGGTAGGCTATACCTGAAAACCGGAGATAAAGAGAAAA
CCTTAAAACCGTAGCAACACGTGAAGTATTTGATGCTCCGGAGCCGCCTTATAGAGTTGACCCAA
GGTCCCTTTCGAAATGCCAACCTTGCAGCGTAAGGATCTTCAAGCTCTATTGTAGTTCCACACAT
CAATATAAGTAGGTTTCATTTTACTTAATTGGGTGGGGGGGCTTGAGAGGTGCGCAAAAGGAGGT
ACCCATGCTACCATGCCGTATCTAGCAACCAACGGGAAGAAATGGTGGTAGTTATATATGAGCAT
GTGGTAGTTAATGGCTTAATCAGCTGCTTATTCAATGTGAAGCACGATCAGCAAGCCTTGGCCCA
AGTGATCAGGCCTGGGCCAGCGTAACACCTACCGAGAGCAGCTGAACCAACCGAGGGATTGGCCT
TTCTTGAAATCGCCTTTGCTTTGGATCGCTAACTCAGGCCCAAGT
Found at i:121061 original size:21 final size:21
Alignment explanation
Indices: 121035--121092 Score: 100
Period size: 21 Copynumber: 2.8 Consensus size: 21
121025 CAACCTTTCA
121035 TGATTCGATCAAACCTTTAGT
1 TGATTCGATCAAACCTTTAGT
121056 TGATTCGATCAAACCTTTAGT
1 TGATTCGATCAAACCTTTAGT
*
121077 TGATTCGA-CCAACCTT
1 TGATTCGATCAAACCTT
121093 GAAAAGAACG
Statistics
Matches: 36, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
20 7 0.19
21 29 0.81
ACGTcount: A:0.28, C:0.22, G:0.14, T:0.36
Consensus pattern (21 bp):
TGATTCGATCAAACCTTTAGT
Left flanking sequence: Indices 120535 -- 121034
TGAAGGAGGGGAGAACGACTCATCGATCAACTTCTTCCAATGAGAATTACCATTGCATGCACCAA
TCTACAAGTCGATGAGATCGGTCGAGTGGTCCCAGTTGGAGATGGGTGTCTGTCTATGGATTGAA
CAAGATTCCCCATTTGGTTGGAACACCGCTGGTTCGTTCCTAATCGTGGTGGTCGGTACACAGCA
GCCAACGTCCCTCCCGACTTACTCGATCTTCTCTTTCCTTACTCGATCTTCTCTTTCATCTTTCC
TCGACTTACTCCTGTATCAATACGTTACGCCACCCTCGAAGGTAGAACGAAGATCGGATAGCTTA
TGCTCTTGCCCAAGCGACCGTGATCCTCTTCCTGGCCTGAAGCTTCCTCCTAGGCAGAGCCCCCG
CAAGCAATCCAGCCCAGCTTCGATCTTGATCTCCATTCATCTCCTCTCATTCATCAACCCCCGAT
CGGCACCTACCTTATGGATGGATGCCGCTTGCCGCCAACCTTTCA
Right flanking sequence: Indices 121093 -- 121592
GAAAAGAACGTTAGCTTAGAGGTAGGCTATACCTGAAAACCGGAGATAAAGAGAAAACCTTAAAA
CCGTAGCAACACGTGAAGTATTTGATGCTCCGGAGCCGCCTTATAGAGTTGACCCAAGGTCCCTT
TCGAAATGCCAACCTTGCAGCGTAAGGATCTTCAAGCTCTATTGTAGTTCCACACATCAATATAA
GTAGGTTTCATTTTACTTAATTGGGTGGGGGGGCTTGAGAGGTGCGCAAAAGGAGGTACCCATGC
TACCATGCCGTATCTAGCAACCAACGGGAAGAAATGGTGGTAGTTATATATGAGCATGTGGTAGT
TAATGGCTTAATCAGCTGCTTATTCAATGTGAAGCACGATCAGCAAGCCTTGGCCCAAGTGATCA
GGCCTGGGCCAGCGTAACACCTACCGAGAGCAGCTGAACCAACCGAGGGATTGGCCTTTCTTGAA
ATCGCCTTTGCTTTGGATCGCTAACTCAGGCCCAAGTAAGGTGGT
Found at i:124519 original size:20 final size:20
Alignment explanation
Indices: 124494--124545 Score: 104
Period size: 20 Copynumber: 2.6 Consensus size: 20
124484 TCTCTCCTCT
124494 CCCTCTCCTCTCGATGGCGG
1 CCCTCTCCTCTCGATGGCGG
124514 CCCTCTCCTCTCGATGGCGG
1 CCCTCTCCTCTCGATGGCGG
124534 CCCTCTCCTCTC
1 CCCTCTCCTCTC
124546 CTTATCAGTC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.04, C:0.50, G:0.19, T:0.27
Consensus pattern (20 bp):
CCCTCTCCTCTCGATGGCGG
Left flanking sequence: Indices 123994 -- 124493
CTCGAGCCACGTCCTCGCCTTCCTTTCGTCAGGCGAGCCCCCTTGCCTCGCCTTCCTACCGCATC
CGTTTAAGGATTCTCAGGATCATCACTCTCAGGATAGGGAGAATTCTCGGGGAGATCCCCGAACC
CCCGTTACCGCTCTCTCTTTCTTTGCCACTAACACTACCCCTCCTATATGAATATCACTAGAACC
TCTCTCATCATCACTAGGAAACATATCTAATCCTATCATTCCCCATAGAAAGCTTTATGTCTTTT
CTTACAAGGGGCATTAGGAGCGCTAGCTAGTTACTTATTTGAGAGGGGCACCCAATTGAACTTGA
ATCCAATTCATTGGCTGCCCCTCTCAAATAAGTAACTAGCTAGCGGTCGAGCCTGCTTCCTTGAT
GCTTATTGGGCTTATGGTCGAGCAACTAAAGTTCCTCTCCCTTATAATTCATGCATAATGACATA
GAGAATATATGCTTTGGCGGAGGTTTTCACATCTTTCTCTCCTCT
Right flanking sequence: Indices 124546 -- 125045
CTTATCAGTCGAGCCCCCTCTCCTCTCCTTATCAGTCGAGCCCCCTAAAGGGTCCTTATTAGTCG
AGCGTGCTTACGCACCCTAAAGGGTCCTTAACAGTCGAGCACCTAAAGGTCCTCTCCTCTTGGGT
TTACTTATTGCCCCACCCAATAAGTCAACCCTGGGTCGAGCACCTAAAGGTCCGTGTGCGTCTAG
TCCTCTGAAGGGTCCTTTAACAGTCGAGCATGCTTGCGCATCCTAATGCGTCCTTAACAGTCGAG
CACCTAAAGGTCCTTAAGGTCGAGCACCTAAAGGTCCTTATGGTCGAGCACCTAAAGGTTAGGGT
TTACTTATTGTGTTGGGGGGTTAACAGTCGAGCATGCTTGCGCATCCTTAACAGTCGAGCACCTA
AAGGTCCTTAACAGTCGAGTGTGCTTACGCACCCTTTGGTCGAGCGACTACGTACCTCAAAGTCA
ATACGTTATACGCCTTAAGTCTTCACTTCCTCATCTCCAAGAAAG
Found at i:124543 original size:25 final size:24
Alignment explanation
Indices: 124489--124547 Score: 72
Period size: 20 Copynumber: 2.5 Consensus size: 24
124479 ATCTTTCTCT
124489 CCTCTCCCTCTCCTCTCGATGGCGG
1 CCTCT-CCTCTCCTCTCGATGGCGG
124514 ---C-CCTCTCCTCTCGATGGCGG
1 CCTCTCCTCTCCTCTCGATGGCGG
124534 CCCTCTCCTCTCCT
1 -CCTCTCCTCTCCT
124548 TATCAGTCGA
Statistics
Matches: 29, Mismatches: 0, Indels: 10
0.74 0.00 0.26
Matches are distributed among these distances:
20 19 0.66
22 1 0.03
24 1 0.03
25 8 0.28
ACGTcount: A:0.03, C:0.51, G:0.17, T:0.29
Consensus pattern (24 bp):
CCTCTCCTCTCCTCTCGATGGCGG
Left flanking sequence: Indices 123989 -- 124488
GGGGGCTCGAGCCACGTCCTCGCCTTCCTTTCGTCAGGCGAGCCCCCTTGCCTCGCCTTCCTACC
GCATCCGTTTAAGGATTCTCAGGATCATCACTCTCAGGATAGGGAGAATTCTCGGGGAGATCCCC
GAACCCCCGTTACCGCTCTCTCTTTCTTTGCCACTAACACTACCCCTCCTATATGAATATCACTA
GAACCTCTCTCATCATCACTAGGAAACATATCTAATCCTATCATTCCCCATAGAAAGCTTTATGT
CTTTTCTTACAAGGGGCATTAGGAGCGCTAGCTAGTTACTTATTTGAGAGGGGCACCCAATTGAA
CTTGAATCCAATTCATTGGCTGCCCCTCTCAAATAAGTAACTAGCTAGCGGTCGAGCCTGCTTCC
TTGATGCTTATTGGGCTTATGGTCGAGCAACTAAAGTTCCTCTCCCTTATAATTCATGCATAATG
ACATAGAGAATATATGCTTTGGCGGAGGTTTTCACATCTTTCTCT
Right flanking sequence: Indices 124548 -- 125047
TATCAGTCGAGCCCCCTCTCCTCTCCTTATCAGTCGAGCCCCCTAAAGGGTCCTTATTAGTCGAG
CGTGCTTACGCACCCTAAAGGGTCCTTAACAGTCGAGCACCTAAAGGTCCTCTCCTCTTGGGTTT
ACTTATTGCCCCACCCAATAAGTCAACCCTGGGTCGAGCACCTAAAGGTCCGTGTGCGTCTAGTC
CTCTGAAGGGTCCTTTAACAGTCGAGCATGCTTGCGCATCCTAATGCGTCCTTAACAGTCGAGCA
CCTAAAGGTCCTTAAGGTCGAGCACCTAAAGGTCCTTATGGTCGAGCACCTAAAGGTTAGGGTTT
ACTTATTGTGTTGGGGGGTTAACAGTCGAGCATGCTTGCGCATCCTTAACAGTCGAGCACCTAAA
GGTCCTTAACAGTCGAGTGTGCTTACGCACCCTTTGGTCGAGCGACTACGTACCTCAAAGTCAAT
ACGTTATACGCCTTAAGTCTTCACTTCCTCATCTCCAAGAAAGCC
Found at i:124572 original size:27 final size:27
Alignment explanation
Indices: 124534--124591 Score: 116
Period size: 27 Copynumber: 2.1 Consensus size: 27
124524 TCGATGGCGG
124534 CCCTCTCCTCTCCTTATCAGTCGAGCC
1 CCCTCTCCTCTCCTTATCAGTCGAGCC
124561 CCCTCTCCTCTCCTTATCAGTCGAGCC
1 CCCTCTCCTCTCCTTATCAGTCGAGCC
124588 CCCT
1 CCCT
124592 AAAGGGTCCT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.10, C:0.50, G:0.10, T:0.29
Consensus pattern (27 bp):
CCCTCTCCTCTCCTTATCAGTCGAGCC
Left flanking sequence: Indices 124034 -- 124533
CCTTGCCTCGCCTTCCTACCGCATCCGTTTAAGGATTCTCAGGATCATCACTCTCAGGATAGGGA
GAATTCTCGGGGAGATCCCCGAACCCCCGTTACCGCTCTCTCTTTCTTTGCCACTAACACTACCC
CTCCTATATGAATATCACTAGAACCTCTCTCATCATCACTAGGAAACATATCTAATCCTATCATT
CCCCATAGAAAGCTTTATGTCTTTTCTTACAAGGGGCATTAGGAGCGCTAGCTAGTTACTTATTT
GAGAGGGGCACCCAATTGAACTTGAATCCAATTCATTGGCTGCCCCTCTCAAATAAGTAACTAGC
TAGCGGTCGAGCCTGCTTCCTTGATGCTTATTGGGCTTATGGTCGAGCAACTAAAGTTCCTCTCC
CTTATAATTCATGCATAATGACATAGAGAATATATGCTTTGGCGGAGGTTTTCACATCTTTCTCT
CCTCTCCCTCTCCTCTCGATGGCGGCCCTCTCCTCTCGATGGCGG
Right flanking sequence: Indices 124592 -- 125091
AAAGGGTCCTTATTAGTCGAGCGTGCTTACGCACCCTAAAGGGTCCTTAACAGTCGAGCACCTAA
AGGTCCTCTCCTCTTGGGTTTACTTATTGCCCCACCCAATAAGTCAACCCTGGGTCGAGCACCTA
AAGGTCCGTGTGCGTCTAGTCCTCTGAAGGGTCCTTTAACAGTCGAGCATGCTTGCGCATCCTAA
TGCGTCCTTAACAGTCGAGCACCTAAAGGTCCTTAAGGTCGAGCACCTAAAGGTCCTTATGGTCG
AGCACCTAAAGGTTAGGGTTTACTTATTGTGTTGGGGGGTTAACAGTCGAGCATGCTTGCGCATC
CTTAACAGTCGAGCACCTAAAGGTCCTTAACAGTCGAGTGTGCTTACGCACCCTTTGGTCGAGCG
ACTACGTACCTCAAAGTCAATACGTTATACGCCTTAAGTCTTCACTTCCTCATCTCCAAGAAAGC
CTGGACTGGGAAAGAAAGGACCTTACTGATCGACCCTGTGTTAGA
Found at i:124601 original size:27 final size:27
Alignment explanation
Indices: 124543--124613 Score: 79
Period size: 27 Copynumber: 2.6 Consensus size: 27
124533 GCCCTCTCCT
*** *
124543 CTCCTTATCAGTCGAGCCCCCTCTCCT
1 CTCCTTATCAGTCGAGCCCCCTAAACG
*
124570 CTCCTTATCAGTCGAGCCCCCTAAAGG
1 CTCCTTATCAGTCGAGCCCCCTAAACG
* *
124597 GTCCTTATTAGTCGAGC
1 CTCCTTATCAGTCGAGC
124614 GTGCTTACGC
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 37 1.00
ACGTcount: A:0.17, C:0.38, G:0.17, T:0.28
Consensus pattern (27 bp):
CTCCTTATCAGTCGAGCCCCCTAAACG
Left flanking sequence: Indices 124043 -- 124542
GCCTTCCTACCGCATCCGTTTAAGGATTCTCAGGATCATCACTCTCAGGATAGGGAGAATTCTCG
GGGAGATCCCCGAACCCCCGTTACCGCTCTCTCTTTCTTTGCCACTAACACTACCCCTCCTATAT
GAATATCACTAGAACCTCTCTCATCATCACTAGGAAACATATCTAATCCTATCATTCCCCATAGA
AAGCTTTATGTCTTTTCTTACAAGGGGCATTAGGAGCGCTAGCTAGTTACTTATTTGAGAGGGGC
ACCCAATTGAACTTGAATCCAATTCATTGGCTGCCCCTCTCAAATAAGTAACTAGCTAGCGGTCG
AGCCTGCTTCCTTGATGCTTATTGGGCTTATGGTCGAGCAACTAAAGTTCCTCTCCCTTATAATT
CATGCATAATGACATAGAGAATATATGCTTTGGCGGAGGTTTTCACATCTTTCTCTCCTCTCCCT
CTCCTCTCGATGGCGGCCCTCTCCTCTCGATGGCGGCCCTCTCCT
Right flanking sequence: Indices 124614 -- 125113
GTGCTTACGCACCCTAAAGGGTCCTTAACAGTCGAGCACCTAAAGGTCCTCTCCTCTTGGGTTTA
CTTATTGCCCCACCCAATAAGTCAACCCTGGGTCGAGCACCTAAAGGTCCGTGTGCGTCTAGTCC
TCTGAAGGGTCCTTTAACAGTCGAGCATGCTTGCGCATCCTAATGCGTCCTTAACAGTCGAGCAC
CTAAAGGTCCTTAAGGTCGAGCACCTAAAGGTCCTTATGGTCGAGCACCTAAAGGTTAGGGTTTA
CTTATTGTGTTGGGGGGTTAACAGTCGAGCATGCTTGCGCATCCTTAACAGTCGAGCACCTAAAG
GTCCTTAACAGTCGAGTGTGCTTACGCACCCTTTGGTCGAGCGACTACGTACCTCAAAGTCAATA
CGTTATACGCCTTAAGTCTTCACTTCCTCATCTCCAAGAAAGCCTGGACTGGGAAAGAAAGGACC
TTACTGATCGACCCTGTGTTAGATCTCGTTTTGGGAGGCGGGGGC
Found at i:124831 original size:24 final size:24
Alignment explanation
Indices: 124790--124864 Score: 123
Period size: 24 Copynumber: 3.1 Consensus size: 24
124780 ATCCTAATGC
*
124790 GTCCTTAACAGTCGAGCACCTAAAG
1 GTCCTTAA-GGTCGAGCACCTAAAG
124815 GTCCTTAAGGTCGAGCACCTAAAG
1 GTCCTTAAGGTCGAGCACCTAAAG
*
124839 GTCCTTATGGTCGAGCACCTAAAG
1 GTCCTTAAGGTCGAGCACCTAAAG
124863 GT
1 GT
124865 TAGGGTTTAC
Statistics
Matches: 48, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
24 40 0.83
25 8 0.17
ACGTcount: A:0.28, C:0.25, G:0.24, T:0.23
Consensus pattern (24 bp):
GTCCTTAAGGTCGAGCACCTAAAG
Left flanking sequence: Indices 124290 -- 124789
ATTTGAGAGGGGCACCCAATTGAACTTGAATCCAATTCATTGGCTGCCCCTCTCAAATAAGTAAC
TAGCTAGCGGTCGAGCCTGCTTCCTTGATGCTTATTGGGCTTATGGTCGAGCAACTAAAGTTCCT
CTCCCTTATAATTCATGCATAATGACATAGAGAATATATGCTTTGGCGGAGGTTTTCACATCTTT
CTCTCCTCTCCCTCTCCTCTCGATGGCGGCCCTCTCCTCTCGATGGCGGCCCTCTCCTCTCCTTA
TCAGTCGAGCCCCCTCTCCTCTCCTTATCAGTCGAGCCCCCTAAAGGGTCCTTATTAGTCGAGCG
TGCTTACGCACCCTAAAGGGTCCTTAACAGTCGAGCACCTAAAGGTCCTCTCCTCTTGGGTTTAC
TTATTGCCCCACCCAATAAGTCAACCCTGGGTCGAGCACCTAAAGGTCCGTGTGCGTCTAGTCCT
CTGAAGGGTCCTTTAACAGTCGAGCATGCTTGCGCATCCTAATGC
Right flanking sequence: Indices 124865 -- 125364
TAGGGTTTACTTATTGTGTTGGGGGGTTAACAGTCGAGCATGCTTGCGCATCCTTAACAGTCGAG
CACCTAAAGGTCCTTAACAGTCGAGTGTGCTTACGCACCCTTTGGTCGAGCGACTACGTACCTCA
AAGTCAATACGTTATACGCCTTAAGTCTTCACTTCCTCATCTCCAAGAAAGCCTGGACTGGGAAA
GAAAGGACCTTACTGATCGACCCTGTGTTAGATCTCGTTTTGGGAGGCGGGGGCAGGGTTCGAAC
CTGCAGTCTTCAGGTCATGGGCCTGACGAGTCGACCAATTACTCTACCCCGCTATCGTTCTAAGC
CAGGATCAAACTATTTGTTTTGAGTATGATCTATTTTGAGCATCAAATGCCCTCTCCCCTCCTCT
CAAATAAGTAACCAAAGGCAGTCGAGCGTGCTTACGCACCCTCACCATATGAATAGTGAGTGACT
CCGTCCCTTTTCTTTCAAAGGGGAAGTGCATTGAAGACCTAACCC
Found at i:125739 original size:34 final size:34
Alignment explanation
Indices: 125695--125795 Score: 136
Period size: 32 Copynumber: 3.0 Consensus size: 34
125685 GCAGTCGAGC
*
125695 GTGCTTACGCACCCTCACCATATGAATAGTGAGT
1 GTGCTAACGCACCCTCACCATATGAATAGTGAGT
* * *
125729 GTGCTAACGCACCCTCTCC---TGGACAGTCGAGT
1 GTGCTAACGCACCCTCACCATATGAATAGT-GAGT
125761 GTGCTAACGCACCCTCACCATATGAATAGTGAGT
1 GTGCTAACGCACCCTCACCATATGAATAGTGAGT
125795 G
1 G
125796 ACTCCGTCCC
Statistics
Matches: 56, Mismatches: 7, Indels: 8
0.79 0.10 0.11
Matches are distributed among these distances:
31 6 0.11
32 22 0.39
34 22 0.39
35 6 0.11
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.24
Consensus pattern (34 bp):
GTGCTAACGCACCCTCACCATATGAATAGTGAGT
Left flanking sequence: Indices 125195 -- 125694
TCAAACTATTTGTTTTGAGTATGATCTATTTTGAGCATCAAATGCCCTCTCCCCTCCTCTCAAAT
AAGTAACCAAAGGCAGTCGAGCGTGCTTACGCACCCTCACCATATGAATAGTGAGTGACTCCGTC
CCTTTTCTTTCAAAGGGGAAGTGCATTGAAGACCTAACCCATCTTAAAGGTCATTGCAAAGATGA
TGGACACCTATCCCCGCTAATACAAGACCTTTCCGCAGAGAGACCTCGGTTGAGCAACCCCGATC
TTTCTTGTTGCTGGCCATTTTGACTTCCCATTCCATCGGCTTTCTAACGGCGGATGCGATTTCGA
CTAAGTAGAAACCGGCAGGTCGAGATCTTGAAGAAAAGTGCGTTCAGTTGTTTCATGCCTTTTTC
CTCATTTGGGAGCTATATCCTCTAAAGAGTGCACTGAAGCCGCCCGCCTCGTTCCCGCGAGAGAA
AACCCTCTCCCCTCCTCTCAAATAAGTAACCAAAGGCAGTCGAGC
Right flanking sequence: Indices 125796 -- 126295
ACTCCGTCCCTTATCCCGAATCATATTGACCCGGCCACAAGGTCAAGAAGAGTTGGTGACCGGGC
CGTCTTCCTGAAGAGGTAACCCCTTTCAAAGATATCCCGTTCGTCGAGATCTCTTATTTTCGGGT
AGATAACCTATATGAGAGGTCAATGCATAAATGTGTAAACCTATCTCCAAGATCAGTGCTTCAAT
GACGGGCACTTACGAAAGAGAGGGAGGTCGAGATCTCTACAACCCGATGGAATGGCTCTGCCCAT
TTCCCATCCATCTATCTATCTATCTTTTCAACCTTTCCAATCGGAGCCGCTTCAAACTACTGAAT
TCCGAACCCCCAAATCCTTGAGTTCAGATAGCGTTAGTCCTTCTTGAACAACGAACAAAAGGTGC
GTTCTGACTCGCATGTAGCATTATGCGCGCAGCATCCACTGTGTTCAAAGAAGGGACCTATTTCA
CTGCACTTCGTTCCCTACTCAATAGTCTAGATCCCTGGCCTTTTG
Found at i:128446 original size:54 final size:54
Alignment explanation
Indices: 128364--128485 Score: 183
Period size: 54 Copynumber: 2.3 Consensus size: 54
128354 TGCATGGGTA
*
128364 TGGATCCAAAGGTTAGTGTGGGCAAGAATCTTCCTGCAGCAGAA-TCACCAGAGC
1 TGGATCCAAGGGTTAGTGTGGGCAAGAATCTTCCTGCAGCA-AATTCACCAGAGC
* *
128418 TGGATCCAAGGGTTAGTGTGGGCAAGAATCTTCCTGCAGCAAATTCGCCAGATC
1 TGGATCCAAGGGTTAGTGTGGGCAAGAATCTTCCTGCAGCAAATTCACCAGAGC
* *
128472 CGGATCTAAGGGTT
1 TGGATCCAAGGGTT
128486 GAGAGTAGAG
Statistics
Matches: 62, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
53 2 0.03
54 60 0.97
ACGTcount: A:0.27, C:0.21, G:0.29, T:0.23
Consensus pattern (54 bp):
TGGATCCAAGGGTTAGTGTGGGCAAGAATCTTCCTGCAGCAAATTCACCAGAGC
Left flanking sequence: Indices 127864 -- 128363
GTTCGGTGATGTACTGCTTCCGGGATCACTAAAGGTAATTCCTTATTACCGTTAGCAGAATCTTG
TGAGTGAAGGAGGATTGGATTGAGCAACCCATCTTTCTTCGGGAGTTACCTATCTTTCTTAAGGT
CTTTTTTTTGCCCAATCTGAGTCTTGATACGCCTCGGAAGGGAGGGGGAAAGAATGGCTTGATTC
TCTAACAAACATTTAAGGTTAGTAAGGCCGCTCTATTGCTAAATAGAGGATTCTGGTCAAGAGAT
CGCTGGATGGAAGGCTTCCAGAAGAGATTCTCTTTGAATGTGAAGGTGAGCAGTGATCTCAGATC
TTGGATTACGAAAAGCTTCCATTTAGATGTAATTACTGCAAGATTCACGGTCATTTGATCCGGGA
ATGCCCGTCTAGGGCTAAGGTCACCCTAAAGAGGAAAAGCCCTAGTGCTGCTTCTCCTTCCACAC
TGGATCGACAAGTTTATGGTCCCTCTGGATCTGATTGCATGGGTA
Right flanking sequence: Indices 128486 -- 128985
GAGAGTAGAGTGGAGGATTTGGAGGAACCTTGTTCTCGGAAGAACAAGCGGCTTCGCACCTTGTG
TAACTGCTCAGAAGGATATGCTTCTGTTTATCAGATCGGGGATAAGGATTGCAGGGTGCGTTAGC
ACACTCGACTGTCAAGGCCGCCATCGCCTATATTATTTAGGGGCGGAGCCACTCACTATTCCGAT
GGTGAGGACCGGTAGGGGCTCGACTGTCAAGGACCCTTTAGGGTGCGTAAGCACGCTCGACTAAT
AAGGACCCTTTAGGGGGCTCGACTGATAAGGAGAGGAGAGGGGGCTCGACTGATAAGGAGAGGAG
AGGGGTCACTCACTATTCATATGGTGAGGGTGCGTAAGCACGCTCGACTGCCTTTGGTTACTTAT
TTGAGAGGAGGGGAGAGGGTGCGTAAGCACACTCACTATTCATATGGTGAGGGTGCGTAAGCACG
CTCGACTGCCTTTGGTTACTTATTTGAGAGGAGGGGAGAGGGTGC
Found at i:128774 original size:27 final size:27
Alignment explanation
Indices: 128757--128815 Score: 82
Period size: 27 Copynumber: 2.2 Consensus size: 27
128747 AGGACCCTTT
* *
128757 AGGGGGCTCGACTGATAAGGAGAGGAG
1 AGGGGGCTCGACTGATAAGGACACGAG
* *
128784 AGGGGGCTCGACTGATAAGGAGAGGAG
1 AGGGGGCTCGACTGATAAGGACACGAG
128811 AGGGG
1 AGGGG
128816 TCACTCACTA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.29, C:0.10, G:0.51, T:0.10
Consensus pattern (27 bp):
AGGGGGCTCGACTGATAAGGACACGAG
Left flanking sequence: Indices 128257 -- 128756
CCCGTCTAGGGCTAAGGTCACCCTAAAGAGGAAAAGCCCTAGTGCTGCTTCTCCTTCCACACTGG
ATCGACAAGTTTATGGTCCCTCTGGATCTGATTGCATGGGTATGGATCCAAAGGTTAGTGTGGGC
AAGAATCTTCCTGCAGCAGAATCACCAGAGCTGGATCCAAGGGTTAGTGTGGGCAAGAATCTTCC
TGCAGCAAATTCGCCAGATCCGGATCTAAGGGTTGAGAGTAGAGTGGAGGATTTGGAGGAACCTT
GTTCTCGGAAGAACAAGCGGCTTCGCACCTTGTGTAACTGCTCAGAAGGATATGCTTCTGTTTAT
CAGATCGGGGATAAGGATTGCAGGGTGCGTTAGCACACTCGACTGTCAAGGCCGCCATCGCCTAT
ATTATTTAGGGGCGGAGCCACTCACTATTCCGATGGTGAGGACCGGTAGGGGCTCGACTGTCAAG
GACCCTTTAGGGTGCGTAAGCACGCTCGACTAATAAGGACCCTTT
Right flanking sequence: Indices 128816 -- 129315
TCACTCACTATTCATATGGTGAGGGTGCGTAAGCACGCTCGACTGCCTTTGGTTACTTATTTGAG
AGGAGGGGAGAGGGTGCGTAAGCACACTCACTATTCATATGGTGAGGGTGCGTAAGCACGCTCGA
CTGCCTTTGGTTACTTATTTGAGAGGAGGGGAGAGGGTGCGTAAGCACACTCACTATTCATATGG
TGAGGGTTTTACAGCCCTCTACTTCTCTAATATATAGATATAAGGAAGGGGCAATAAATGAGAAG
GGTGAATCAGGATCATATCTGTCTGTTATATAAGGGTTGGTTAGGATCATATCTGTAGGTAGGGA
TCGAGGAGCCTAGCCTACAGGCAGGCCGACCAAAGGGAAGGGAGAAGCTCGCAACCTTATTCATG
CCACTTGGCATGATCGGGGAAAACGGGGTTCGAACCCGCGACTTCTGGCGTGACAGACCAGCACT
CTAACCGACTGAGCTATTTCCCCCTTCCAGATTCGGCCCCCCACC
Found at i:128921 original size:88 final size:88
Alignment explanation
Indices: 128817--129017 Score: 402
Period size: 88 Copynumber: 2.3 Consensus size: 88
128807 GGAGAGGGGT
128817 CACTCACTATTCATATGGTGAGGGTGCGTAAGCACGCTCGACTGCCTTTGGTTACTTATTTGAGA
1 CACTCACTATTCATATGGTGAGGGTGCGTAAGCACGCTCGACTGCCTTTGGTTACTTATTTGAGA
128882 GGAGGGGAGAGGGTGCGTAAGCA
66 GGAGGGGAGAGGGTGCGTAAGCA
128905 CACTCACTATTCATATGGTGAGGGTGCGTAAGCACGCTCGACTGCCTTTGGTTACTTATTTGAGA
1 CACTCACTATTCATATGGTGAGGGTGCGTAAGCACGCTCGACTGCCTTTGGTTACTTATTTGAGA
128970 GGAGGGGAGAGGGTGCGTAAGCA
66 GGAGGGGAGAGGGTGCGTAAGCA
128993 CACTCACTATTCATATGGTGAGGGT
1 CACTCACTATTCATATGGTGAGGGT
129018 TTTACAGCCC
Statistics
Matches: 113, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
88 113 1.00
ACGTcount: A:0.23, C:0.18, G:0.32, T:0.27
Consensus pattern (88 bp):
CACTCACTATTCATATGGTGAGGGTGCGTAAGCACGCTCGACTGCCTTTGGTTACTTATTTGAGA
GGAGGGGAGAGGGTGCGTAAGCA
Left flanking sequence: Indices 128317 -- 128816
ACTGGATCGACAAGTTTATGGTCCCTCTGGATCTGATTGCATGGGTATGGATCCAAAGGTTAGTG
TGGGCAAGAATCTTCCTGCAGCAGAATCACCAGAGCTGGATCCAAGGGTTAGTGTGGGCAAGAAT
CTTCCTGCAGCAAATTCGCCAGATCCGGATCTAAGGGTTGAGAGTAGAGTGGAGGATTTGGAGGA
ACCTTGTTCTCGGAAGAACAAGCGGCTTCGCACCTTGTGTAACTGCTCAGAAGGATATGCTTCTG
TTTATCAGATCGGGGATAAGGATTGCAGGGTGCGTTAGCACACTCGACTGTCAAGGCCGCCATCG
CCTATATTATTTAGGGGCGGAGCCACTCACTATTCCGATGGTGAGGACCGGTAGGGGCTCGACTG
TCAAGGACCCTTTAGGGTGCGTAAGCACGCTCGACTAATAAGGACCCTTTAGGGGGCTCGACTGA
TAAGGAGAGGAGAGGGGGCTCGACTGATAAGGAGAGGAGAGGGGT
Right flanking sequence: Indices 129018 -- 129517
TTTACAGCCCTCTACTTCTCTAATATATAGATATAAGGAAGGGGCAATAAATGAGAAGGGTGAAT
CAGGATCATATCTGTCTGTTATATAAGGGTTGGTTAGGATCATATCTGTAGGTAGGGATCGAGGA
GCCTAGCCTACAGGCAGGCCGACCAAAGGGAAGGGAGAAGCTCGCAACCTTATTCATGCCACTTG
GCATGATCGGGGAAAACGGGGTTCGAACCCGCGACTTCTGGCGTGACAGACCAGCACTCTAACCG
ACTGAGCTATTTCCCCCTTCCAGATTCGGCCCCCCACCCAATAAGTAACTCAAGGTCGAAGGTTT
CAAGCTACGCATCCTAGTAGCAAACGCCGGAGACCTACCTCGCGTAGAAGTACTTTGGGCGGCGT
TTTTGAACTAAACAAGACACTTCGCGTTTCCACCCTCGCCCTCTTAATGACTTATTGGTTAGTGG
GGGTATTTAGAGCGGCTCGTTTGCTCCTCGCCCCTATTAGGACGT
Done.