123.fas.2.7.7.80.10.50.500.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NC_039746
Parameters: 2 7 7 80 10 50 500
Length:  1191054

Tables:   1   2   3   4   5   6   7   8   

This is table  7  of  8  ( 912 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
928211--928334	54	2.3	54	98	0	239	13	25	23	37	1.91
934617--934656	16	2.5	16	92	8	64	27	12	32	27	1.93
935114--935147	13	2.6	13	95	0	59	11	35	14	38	1.83
937352--937440	29	3.1	29	98	0	169	32	16	13	37	1.88
937423--937448	13	2.0	13	100	0	52	53	15	7	23	1.67
939166--939199	13	2.6	13	95	0	59	26	11	38	23	1.89
939228--939261	7	4.9	7	100	0	68	73	0	14	11	1.10
942719--942755	12	3.1	12	96	0	65	10	21	40	27	1.86
944579--944605	14	1.9	14	100	0	54	44	14	22	18	1.86
951356--951405	26	1.9	26	91	0	82	28	28	22	22	1.99
951412--951470	27	2.2	27	100	0	118	10	50	10	28	1.68
951422--951492	27	2.6	27	84	0	79	16	38	16	28	1.91
951619--951668	26	1.9	26	91	0	82	28	28	22	22	1.99
951675--951733	27	2.2	27	100	0	118	10	50	10	28	1.68
952094--952135	17	2.5	17	100	0	84	26	35	9	28	1.88
953148--953173	13	2.0	13	100	0	52	23	7	38	30	1.83
953883--953928	15	3.1	15	100	0	92	32	45	6	15	1.71
954397--954448	26	2.0	26	96	0	95	42	30	9	17	1.81
955318--955384	14	4.8	14	85	7	82	28	17	23	29	1.97
955324--955410	28	3.2	28	79	12	92	31	18	26	24	1.98
955324--955410	14	6.5	13	79	12	70	31	18	26	24	1.98
955337--955411	25	2.8	26	76	15	82	32	17	28	22	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
955608--955640	15	2.2	15	94	0	57	15	27	27	30	1.96
957906--957930	13	1.9	13	100	0	50	24	16	32	28	1.96
957947--957982	18	2.0	18	100	0	72	38	27	16	16	1.90
963599--963626	14	2.0	14	100	0	56	21	21	7	50	1.72
965694--965768	26	2.9	26	89	0	114	21	28	18	32	1.97
968106--968157	26	2.0	25	96	3	95	23	19	26	30	1.98
968052--968261	105	2.0	101	93	5	359	30	23	22	24	1.99
968213--968261	24	2.0	25	92	4	82	22	16	28	32	1.95
968654--968697	23	1.9	23	100	0	88	20	27	27	25	1.99
968471--968895	222	1.9	222	90	3	678	26	21	31	20	1.98
969597--969655	27	2.2	27	100	0	118	10	50	10	28	1.68
969607--969677	27	2.6	27	84	0	79	16	38	16	28	1.91
970784--970857	37	2.0	37	100	0	148	37	24	16	21	1.93
974229--974258	15	2.0	15	93	0	51	10	20	40	30	1.85
976486--976685	32	6.2	32	91	4	339	17	34	23	25	1.96
977739--977797	27	2.2	27	100	0	118	10	50	10	28	1.68
977749--977819	27	2.6	27	84	0	79	16	38	16	28	1.91
978659--978708	1	50.0	1	100	0	100	0	100	0	0	0.00
980749--980837	32	2.8	32	100	0	178	24	24	34	15	1.95
980778--980960	88	2.1	86	91	4	296	22	18	34	24	1.96
986995--987208	30	7.1	30	96	0	365	25	27	40	7	1.82
990475--990524	13	3.9	13	97	2	93	30	8	46	16	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
990628--990693	26	2.5	26	87	0	87	27	10	28	33	1.90
990625--990706	26	3.2	26	82	0	83	26	10	25	36	1.89
990844--990880	12	3.1	12	96	0	65	29	10	24	35	1.89
995266--995292	14	1.9	14	100	0	54	25	7	7	59	1.51
997279--997328	24	2.0	25	96	3	93	28	20	24	28	1.99
1001916--1002108	65	2.9	65	94	2	323	36	17	12	33	1.87
1002216--1002377	88	1.8	88	100	0	324	22	18	30	27	1.97
1002340--1002415	38	2.0	38	100	0	152	18	15	34	31	1.92
1002252--1002502	126	2.0	126	100	0	502	21	17	32	28	1.96
1007288--1007443	78	2.0	78	91	0	249	19	28	35	16	1.93
1007671--1007816	73	2.0	73	100	0	292	13	38	28	19	1.90
1013091--1013150	25	2.5	24	77	17	63	26	13	36	23	1.92
1013313--1013354	21	2.0	22	95	4	77	21	19	28	30	1.97
1018479--1018536	27	2.1	27	93	0	98	15	44	18	20	1.86
1018533--1018695	84	1.9	84	95	2	292	28	25	20	25	1.99
1022470--1022504	17	2.1	17	100	0	70	54	17	17	11	1.71
1029549--1029597	19	2.5	20	83	10	64	12	36	22	28	1.90
1030363--1030404	21	2.0	22	85	4	59	23	11	40	23	1.88
1034783--1034815	6	5.5	6	89	10	50	0	60	0	39	0.97
1034783--1034815	11	2.8	12	90	9	50	0	60	0	39	0.97
1034997--1035056	27	2.3	27	91	5	97	23	31	23	21	1.98
1035163--1035237	25	3.0	25	88	3	125	29	26	22	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1035653--1035827	67	2.7	62	85	12	212	29	13	18	38	1.88
1038737--1038761	12	2.1	12	100	0	50	24	24	20	32	1.98
1039807--1039864	27	2.2	25	90	6	89	22	24	29	24	1.99
1040318--1040348	14	2.2	14	100	0	62	32	25	19	22	1.97
1042851--1042876	13	2.0	13	100	0	52	38	15	23	23	1.92
1043088--1043135	25	2.0	24	83	4	60	27	18	27	27	1.98
1045421--1045457	19	2.0	19	89	5	58	18	29	18	32	1.96
1046245--1046303	27	2.2	27	100	0	118	10	50	10	28	1.68
1046255--1046325	27	2.6	27	84	0	79	16	38	16	28	1.91
1050685--1050743	27	2.2	27	93	0	100	23	20	32	23	1.98
1053814--1053870	26	2.2	26	100	0	114	19	38	14	28	1.90
1054107--1054160	24	2.2	25	93	3	92	27	20	27	24	1.99
1054293--1054351	27	2.2	27	100	0	82	28	10	50	10	1.68
1054358--1054407	26	1.9	26	100	0	100	24	20	26	30	1.98
1054396--1054430	18	1.9	18	100	0	70	17	5	48	28	1.69
1054940--1055120	91	2.0	91	100	0	362	36	16	16	30	1.91
1055580--1055650	24	3.0	24	93	4	126	22	25	25	26	2.00
1055660--1055835	76	2.3	77	93	5	297	30	27	22	19	1.98
1056616--1056834	92	2.4	88	83	14	279	21	30	27	20	1.98
1056865--1056892	9	3.1	9	100	0	56	10	53	25	10	1.67
1057990--1058221	116	2.0	116	100	0	464	27	28	24	19	1.99
1060912--1060946	18	1.9	18	94	0	61	31	20	14	34	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1061667--1061708	20	2.0	21	90	4	68	19	30	19	30	1.96
1062703--1062761	27	2.2	27	100	0	82	28	10	50	10	1.68
1062768--1062817	26	1.9	26	100	0	100	24	20	26	30	1.98
1063425--1063507	24	3.4	24	93	3	130	21	24	25	28	1.99
1063542--1063599	27	2.1	27	100	0	80	29	10	50	10	1.70
1063824--1063881	28	2.1	27	87	9	82	29	8	48	13	1.73
1064210--1064267	27	2.1	28	93	6	102	29	10	50	10	1.70
1064273--1064324	27	2.0	25	92	7	86	21	23	23	32	1.98
1064785--1064835	23	2.1	25	89	7	79	29	13	43	13	1.83
1064841--1064914	25	2.9	26	82	13	100	22	21	25	29	1.99
1065514--1065623	30	3.8	29	86	13	163	19	24	30	26	1.98
1066674--1066726	28	1.9	28	92	3	90	11	45	9	33	1.72
1066995--1067056	24	2.7	23	92	7	101	27	25	24	22	2.00
1069052--1069181	69	1.9	69	90	3	208	27	27	10	33	1.90
1069147--1069196	26	2.0	24	85	11	66	16	34	16	34	1.90
1071398--1071432	19	1.9	18	88	11	54	31	28	28	11	1.92
1072776--1072808	12	2.8	12	95	0	57	27	21	27	24	1.99
1076592--1076638	24	2.0	23	83	4	58	40	29	17	12	1.86
1082455--1082520	25	2.7	24	95	2	114	30	25	24	19	1.98
1082447--1082520	24	3.0	24	90	3	121	28	25	24	21	1.99
1082729--1082755	14	1.9	14	100	0	54	14	29	14	40	1.86
1084605--1084666	29	2.1	29	85	5	81	24	35	9	30	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1085075--1085131	29	2.0	29	86	6	80	24	26	29	19	1.98
1087289--1087342	21	2.6	21	75	0	54	46	22	12	18	1.83
1096260--1096318	27	2.2	27	100	0	82	28	10	50	10	1.68
1096325--1096374	26	1.9	26	100	0	100	24	20	26	30	1.98
1096497--1096554	27	2.1	27	93	0	98	20	18	44	15	1.86
1100607--1100685	35	2.3	35	93	0	131	41	26	13	17	1.87
1103423--1103683	131	2.0	131	100	0	522	22	22	27	26	1.99
1103908--1103953	21	2.1	22	84	4	58	28	23	15	32	1.95
1103907--1103956	22	2.3	23	79	10	59	26	26	14	34	1.94
1108645--1108714	27	2.6	27	83	0	77	28	20	31	20	1.97

Tables:   1   2   3   4   5   6   7   8