Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_039746
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 1191054
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 2 characters in sequence are not A, C, G, or T
File 6 of 8
Found at i:784193 original size:14 final size:14
Alignment explanation
Indices: 784174--784203 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
784164 GGACTATTCA
784174 ATCCAAGATGTACG
1 ATCCAAGATGTACG
784188 ATCCAAGATGTACG
1 ATCCAAGATGTACG
784202 AT
1 AT
784204 ATTGGTCTGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.37, C:0.20, G:0.20, T:0.23
Consensus pattern (14 bp):
ATCCAAGATGTACG
Left flanking sequence: Indices 783674 -- 784173
TCCTTATAGGTGCCAGTGATCTGGTTTATCGAGACATCCAATACCAGCAGATCAGGAGTTTACCG
AGTATAATAAGCAGCACCAAGAGCAAAGTATATAGTCGCAGGAGATAAGCTCAAAGCACCCCTTC
CAGTTCCAGGTCGAGATTTAGAACCAGGAGCGACCAGTGCATATACCTAGGCATAGCCTATGTAA
CAGGCAACTAAAGCCACGGAGCTAAGGGCAGGATAAGGGGAAGGAGAAGGGAAGGTAAATCATCC
AGCGAACAGGAGAGGGGATCAGATCGAACAGAGGAGGAGGAACTAACAGAGGATCGGATCAAAAA
AGAAGGTGCGAAGCCGCCAGAGAATAAATAAGGAGGGGCAAGGCATATCGCATAGGAAGCAACTA
CACGGATAGGCACTCTTGCATATGTCTTATATAAACTCTAGAAACATTTGGCTGTGGCCTTTCAA
GTGGGAACTGCAACTACCTATACCTTGACTAGGTTGGACTATTCA
Right flanking sequence: Indices 784204 -- 784703
ATTGGTCTGTCTCCGTTGGTTTGCCTTCATGAGATGAGGATCGGTATACAATTGGCTAGCTGTGG
ACGCTCGACCTCCCTCTATCCAAAAGTAGGCTCGCTCGCTGTTAGACAATTGAATTAGGGTTTGT
TTCCCAGTGCCATCTAGGAATAGGGGTTCGACCTAACCTAATGCGCCAGGAAAGGCTATCTGAAT
TGAAAGGAAAGGCGCCATGCACCCGCTTCTCTTTATGCACTCTATTTTCACGACTTGTGGCCTTC
CCTGTTATTACGTATATAATAGAGAGACTCAACCTTGCTTGACCCTTAGCTCCTCTACAAGAATT
CGTCCAAGCACTTACTTTGATGCGTGCCGTGCTGTTAAGAAAAGATCAAAGCGGGTTATGGTGGA
AAGCTGTTCAGTGACGCAAGTGAGCCGAACGGGAGGAAATGCCCTACTTATTCCTGCGTCAGCAA
GCAAAATGTACTTTGACTTAATCACCTTTCTACTTAGTTTAGTCT
Found at i:790960 original size:5 final size:5
Alignment explanation
Indices: 790950--790998 Score: 71
Period size: 5 Copynumber: 9.2 Consensus size: 5
790940 GAGTTGTTCG
790950 TCTCC TCTCC TCTCC TCTCCC TCTCC TCTCCC TCTCC TCTCCC TCTCC
1 TCTCC TCTCC TCTCC TCT-CC TCTCC TCT-CC TCTCC TCT-CC TCTCC
790998 T
1 T
790999 TAACAGTCGA
Statistics
Matches: 41, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
5 26 0.63
6 15 0.37
ACGTcount: A:0.00, C:0.61, G:0.00, T:0.39
Consensus pattern (5 bp):
TCTCC
Left flanking sequence: Indices 790450 -- 790949
CTTCCTCTCCTTAGATTTACTATAGTCGCCTGCTTCCTTGATGCTTATTGGGTGGCCCCTCTCAA
ATAAGTAACTAAAGGTTGGTCGAGCCATGCTTACGCATCCTCTCCTTGACAGTCGAGTGTGCCCG
CATCCTCTCCCTTATGGTCGAGCCCCTCCGGTCCTCGCTTTCCTAACGTCAAGCGAGCGTTCAAA
CCCTCACCCATCGGAATGAGTGAGTGACCCCTAAATAATATAGGGCCCTCTCCTTAATTGAGAGC
GTGCTTACGCACCCTTGCCCCATTCCTTAAAGGTCAAGCAAGCAAGAAATTTCAATTTGACTTAT
TGGGCTCTCAAATAAGTAACTAAAAGGCGTTGGTCGAGTCACTAACGTACCTCTCCTTACCAGTC
GAGCCGATGGCGGCCTTATTAGTCGAGCGTGCTTACGCACCCTGACGGACCTCCCTTTTGGGGCG
TATGGGGTGCTTATTTGGTGAGGGGCCCCAAAAGAGAGTTGTTCG
Right flanking sequence: Indices 790999 -- 791498
TAACAGTCGAGCACCTAAAGGTCCTCTCCTCTCCTTATCAGTCGAGCCCCCTAAAGGGTCCTTAT
CAGTCGAGCACCTAAAGGTTCAATTTACTTATTGGGTGGGGGGGCGTTGGTCGAGCCCTGCCGGG
GGCATCCTCTCCTTAACAGTCGAGCATGCTTGCGCATCCTCTCCCTCTCCCTTAAGGTCGAGCAC
CTAAAGGTCCTATGGTCGAGCACCTAAAGGTCCTTATGGTCGAGCACCTAAAGGTCCTCTCCTCT
CCTTATCAGTCGAGCCCCCTAAAGGGTCCTTAACAGTCGAGCATGCTTGCGCATCCTTAACAGTC
GAGCACCTAAAGGTCCTCTCCTCTCCTTATCAGTCGAGCCCCCTAAAGGGTCCTTATCAGTCGAG
CCTGCTTACGCATCCTTAGGGTCGAGCACCTAAAGGTCCTCTCCTCTCCTTATCAGTCGAGCCCC
CTAAAGGGTCCTTAACAGTCGAGCATGCTTGCGCATCCTTAACAG
Found at i:790974 original size:11 final size:11
Alignment explanation
Indices: 790950--790998 Score: 91
Period size: 11 Copynumber: 4.5 Consensus size: 11
790940 GAGTTGTTCG
790950 TCTCCTCT-CC
1 TCTCCTCTCCC
790960 TCTCCTCTCCC
1 TCTCCTCTCCC
790971 TCTCCTCTCCC
1 TCTCCTCTCCC
790982 TCTCCTCTCCC
1 TCTCCTCTCCC
790993 TCTCCT
1 TCTCCT
790999 TAACAGTCGA
Statistics
Matches: 38, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
10 8 0.21
11 30 0.79
ACGTcount: A:0.00, C:0.61, G:0.00, T:0.39
Consensus pattern (11 bp):
TCTCCTCTCCC
Left flanking sequence: Indices 790450 -- 790949
CTTCCTCTCCTTAGATTTACTATAGTCGCCTGCTTCCTTGATGCTTATTGGGTGGCCCCTCTCAA
ATAAGTAACTAAAGGTTGGTCGAGCCATGCTTACGCATCCTCTCCTTGACAGTCGAGTGTGCCCG
CATCCTCTCCCTTATGGTCGAGCCCCTCCGGTCCTCGCTTTCCTAACGTCAAGCGAGCGTTCAAA
CCCTCACCCATCGGAATGAGTGAGTGACCCCTAAATAATATAGGGCCCTCTCCTTAATTGAGAGC
GTGCTTACGCACCCTTGCCCCATTCCTTAAAGGTCAAGCAAGCAAGAAATTTCAATTTGACTTAT
TGGGCTCTCAAATAAGTAACTAAAAGGCGTTGGTCGAGTCACTAACGTACCTCTCCTTACCAGTC
GAGCCGATGGCGGCCTTATTAGTCGAGCGTGCTTACGCACCCTGACGGACCTCCCTTTTGGGGCG
TATGGGGTGCTTATTTGGTGAGGGGCCCCAAAAGAGAGTTGTTCG
Right flanking sequence: Indices 790999 -- 791498
TAACAGTCGAGCACCTAAAGGTCCTCTCCTCTCCTTATCAGTCGAGCCCCCTAAAGGGTCCTTAT
CAGTCGAGCACCTAAAGGTTCAATTTACTTATTGGGTGGGGGGGCGTTGGTCGAGCCCTGCCGGG
GGCATCCTCTCCTTAACAGTCGAGCATGCTTGCGCATCCTCTCCCTCTCCCTTAAGGTCGAGCAC
CTAAAGGTCCTATGGTCGAGCACCTAAAGGTCCTTATGGTCGAGCACCTAAAGGTCCTCTCCTCT
CCTTATCAGTCGAGCCCCCTAAAGGGTCCTTAACAGTCGAGCATGCTTGCGCATCCTTAACAGTC
GAGCACCTAAAGGTCCTCTCCTCTCCTTATCAGTCGAGCCCCCTAAAGGGTCCTTATCAGTCGAG
CCTGCTTACGCATCCTTAGGGTCGAGCACCTAAAGGTCCTCTCCTCTCCTTATCAGTCGAGCCCC
CTAAAGGGTCCTTAACAGTCGAGCATGCTTGCGCATCCTTAACAG
Found at i:791033 original size:35 final size:38
Alignment explanation
Indices: 790984--791060 Score: 115
Period size: 35 Copynumber: 2.1 Consensus size: 38
790974 CCTCTCCCTC
790984 TCCTCTCCCTCTCCTTAACAGTCGAG-CACCTAAA-GG
1 TCCTCTCCCTCTCCTTAACAGTCGAGCCACCTAAAGGG
* *
791020 TCCTCT-CCTCTCCTTATCAGTCGAGCCCCCTAAAGGG
1 TCCTCTCCCTCTCCTTAACAGTCGAGCCACCTAAAGGG
791057 TCCT
1 TCCT
791061 TATCAGTCGA
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
35 18 0.49
36 13 0.35
37 6 0.16
ACGTcount: A:0.18, C:0.40, G:0.14, T:0.27
Consensus pattern (38 bp):
TCCTCTCCCTCTCCTTAACAGTCGAGCCACCTAAAGGG
Left flanking sequence: Indices 790484 -- 790983
TCCTTGATGCTTATTGGGTGGCCCCTCTCAAATAAGTAACTAAAGGTTGGTCGAGCCATGCTTAC
GCATCCTCTCCTTGACAGTCGAGTGTGCCCGCATCCTCTCCCTTATGGTCGAGCCCCTCCGGTCC
TCGCTTTCCTAACGTCAAGCGAGCGTTCAAACCCTCACCCATCGGAATGAGTGAGTGACCCCTAA
ATAATATAGGGCCCTCTCCTTAATTGAGAGCGTGCTTACGCACCCTTGCCCCATTCCTTAAAGGT
CAAGCAAGCAAGAAATTTCAATTTGACTTATTGGGCTCTCAAATAAGTAACTAAAAGGCGTTGGT
CGAGTCACTAACGTACCTCTCCTTACCAGTCGAGCCGATGGCGGCCTTATTAGTCGAGCGTGCTT
ACGCACCCTGACGGACCTCCCTTTTGGGGCGTATGGGGTGCTTATTTGGTGAGGGGCCCCAAAAG
AGAGTTGTTCGTCTCCTCTCCTCTCCTCTCCCTCTCCTCTCCCTC
Right flanking sequence: Indices 791061 -- 791560
TATCAGTCGAGCACCTAAAGGTTCAATTTACTTATTGGGTGGGGGGGCGTTGGTCGAGCCCTGCC
GGGGGCATCCTCTCCTTAACAGTCGAGCATGCTTGCGCATCCTCTCCCTCTCCCTTAAGGTCGAG
CACCTAAAGGTCCTATGGTCGAGCACCTAAAGGTCCTTATGGTCGAGCACCTAAAGGTCCTCTCC
TCTCCTTATCAGTCGAGCCCCCTAAAGGGTCCTTAACAGTCGAGCATGCTTGCGCATCCTTAACA
GTCGAGCACCTAAAGGTCCTCTCCTCTCCTTATCAGTCGAGCCCCCTAAAGGGTCCTTATCAGTC
GAGCCTGCTTACGCATCCTTAGGGTCGAGCACCTAAAGGTCCTCTCCTCTCCTTATCAGTCGAGC
CCCCTAAAGGGTCCTTAACAGTCGAGCATGCTTGCGCATCCTTAACAGTCGAGCACCTAAAGGTC
CTCTCCTCTCCTTATCAGTCGAGCCCCCTAAAGGGTCCTTATCAG
Found at i:791068 original size:27 final size:26
Alignment explanation
Indices: 791030--791081 Score: 86
Period size: 27 Copynumber: 2.0 Consensus size: 26
791020 TCCTCTCCTC
*
791030 TCCTTATCAGTCGAGCCCCCTAAAGGG
1 TCCTTATCAGTCGAG-CACCTAAAGGG
791057 TCCTTATCAGTCGAGCACCTAAAGG
1 TCCTTATCAGTCGAGCACCTAAAGG
791082 TTCAATTTAC
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
26 9 0.38
27 15 0.62
ACGTcount: A:0.25, C:0.31, G:0.21, T:0.23
Consensus pattern (26 bp):
TCCTTATCAGTCGAGCACCTAAAGGG
Left flanking sequence: Indices 790530 -- 791029
TTGGTCGAGCCATGCTTACGCATCCTCTCCTTGACAGTCGAGTGTGCCCGCATCCTCTCCCTTAT
GGTCGAGCCCCTCCGGTCCTCGCTTTCCTAACGTCAAGCGAGCGTTCAAACCCTCACCCATCGGA
ATGAGTGAGTGACCCCTAAATAATATAGGGCCCTCTCCTTAATTGAGAGCGTGCTTACGCACCCT
TGCCCCATTCCTTAAAGGTCAAGCAAGCAAGAAATTTCAATTTGACTTATTGGGCTCTCAAATAA
GTAACTAAAAGGCGTTGGTCGAGTCACTAACGTACCTCTCCTTACCAGTCGAGCCGATGGCGGCC
TTATTAGTCGAGCGTGCTTACGCACCCTGACGGACCTCCCTTTTGGGGCGTATGGGGTGCTTATT
TGGTGAGGGGCCCCAAAAGAGAGTTGTTCGTCTCCTCTCCTCTCCTCTCCCTCTCCTCTCCCTCT
CCTCTCCCTCTCCTTAACAGTCGAGCACCTAAAGGTCCTCTCCTC
Right flanking sequence: Indices 791082 -- 791581
TTCAATTTACTTATTGGGTGGGGGGGCGTTGGTCGAGCCCTGCCGGGGGCATCCTCTCCTTAACA
GTCGAGCATGCTTGCGCATCCTCTCCCTCTCCCTTAAGGTCGAGCACCTAAAGGTCCTATGGTCG
AGCACCTAAAGGTCCTTATGGTCGAGCACCTAAAGGTCCTCTCCTCTCCTTATCAGTCGAGCCCC
CTAAAGGGTCCTTAACAGTCGAGCATGCTTGCGCATCCTTAACAGTCGAGCACCTAAAGGTCCTC
TCCTCTCCTTATCAGTCGAGCCCCCTAAAGGGTCCTTATCAGTCGAGCCTGCTTACGCATCCTTA
GGGTCGAGCACCTAAAGGTCCTCTCCTCTCCTTATCAGTCGAGCCCCCTAAAGGGTCCTTAACAG
TCGAGCATGCTTGCGCATCCTTAACAGTCGAGCACCTAAAGGTCCTCTCCTCTCCTTATCAGTCG
AGCCCCCTAAAGGGTCCTTATCAGTCGAGCCTGCTTACGCATCCT
Found at i:791236 original size:24 final size:24
Alignment explanation
Indices: 791178--791251 Score: 132
Period size: 24 Copynumber: 3.1 Consensus size: 24
791168 TCTCCCTCTC
*
791178 CCTTAAGGTCGAGCACCTAAAGGT
1 CCTTATGGTCGAGCACCTAAAGGT
791202 CC-TATGGTCGAGCACCTAAAGGT
1 CCTTATGGTCGAGCACCTAAAGGT
791225 CCTTATGGTCGAGCACCTAAAGGT
1 CCTTATGGTCGAGCACCTAAAGGT
791249 CCT
1 CCT
791252 CTCCTCTCCT
Statistics
Matches: 48, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
23 22 0.46
24 26 0.54
ACGTcount: A:0.26, C:0.27, G:0.24, T:0.23
Consensus pattern (24 bp):
CCTTATGGTCGAGCACCTAAAGGT
Left flanking sequence: Indices 790678 -- 791177
AATAATATAGGGCCCTCTCCTTAATTGAGAGCGTGCTTACGCACCCTTGCCCCATTCCTTAAAGG
TCAAGCAAGCAAGAAATTTCAATTTGACTTATTGGGCTCTCAAATAAGTAACTAAAAGGCGTTGG
TCGAGTCACTAACGTACCTCTCCTTACCAGTCGAGCCGATGGCGGCCTTATTAGTCGAGCGTGCT
TACGCACCCTGACGGACCTCCCTTTTGGGGCGTATGGGGTGCTTATTTGGTGAGGGGCCCCAAAA
GAGAGTTGTTCGTCTCCTCTCCTCTCCTCTCCCTCTCCTCTCCCTCTCCTCTCCCTCTCCTTAAC
AGTCGAGCACCTAAAGGTCCTCTCCTCTCCTTATCAGTCGAGCCCCCTAAAGGGTCCTTATCAGT
CGAGCACCTAAAGGTTCAATTTACTTATTGGGTGGGGGGGCGTTGGTCGAGCCCTGCCGGGGGCA
TCCTCTCCTTAACAGTCGAGCATGCTTGCGCATCCTCTCCCTCTC
Right flanking sequence: Indices 791252 -- 791751
CTCCTCTCCTTATCAGTCGAGCCCCCTAAAGGGTCCTTAACAGTCGAGCATGCTTGCGCATCCTT
AACAGTCGAGCACCTAAAGGTCCTCTCCTCTCCTTATCAGTCGAGCCCCCTAAAGGGTCCTTATC
AGTCGAGCCTGCTTACGCATCCTTAGGGTCGAGCACCTAAAGGTCCTCTCCTCTCCTTATCAGTC
GAGCCCCCTAAAGGGTCCTTAACAGTCGAGCATGCTTGCGCATCCTTAACAGTCGAGCACCTAAA
GGTCCTCTCCTCTCCTTATCAGTCGAGCCCCCTAAAGGGTCCTTATCAGTCGAGCCTGCTTACGC
ATCCTTAGGGTCGAGCACCTAAAGGTCCTCTCCTCTCCTTATCAGTCGAGCCCCTCTCCTTGACA
GTCGAGTGTGCTTACGCACCCTGTCGGTCCTCTCTTTTGGGGCCCCTTCCCCCCCCAGAGAGTTG
CTCGTCTCCTCTCCTTATCAGTCGAGCCCCTGACGGACCTCCCAC
Found at i:791416 original size:177 final size:177
Alignment explanation
Indices: 791224--791630 Score: 805
Period size: 177 Copynumber: 2.3 Consensus size: 177
791214 CACCTAAAGG
*
791224 TCCTTATGGTCGAGCACCTAAAGGTCCTCTCCTCTCCTTATCAGTCGAGCCCCCTAAAGGGTCCT
1 TCCTTAGGGTCGAGCACCTAAAGGTCCTCTCCTCTCCTTATCAGTCGAGCCCCCTAAAGGGTCCT
791289 TAACAGTCGAGCATGCTTGCGCATCCTTAACAGTCGAGCACCTAAAGGTCCTCTCCTCTCCTTAT
66 TAACAGTCGAGCATGCTTGCGCATCCTTAACAGTCGAGCACCTAAAGGTCCTCTCCTCTCCTTAT
791354 CAGTCGAGCCCCCTAAAGGGTCCTTATCAGTCGAGCCTGCTTACGCA
131 CAGTCGAGCCCCCTAAAGGGTCCTTATCAGTCGAGCCTGCTTACGCA
791401 TCCTTAGGGTCGAGCACCTAAAGGTCCTCTCCTCTCCTTATCAGTCGAGCCCCCTAAAGGGTCCT
1 TCCTTAGGGTCGAGCACCTAAAGGTCCTCTCCTCTCCTTATCAGTCGAGCCCCCTAAAGGGTCCT
791466 TAACAGTCGAGCATGCTTGCGCATCCTTAACAGTCGAGCACCTAAAGGTCCTCTCCTCTCCTTAT
66 TAACAGTCGAGCATGCTTGCGCATCCTTAACAGTCGAGCACCTAAAGGTCCTCTCCTCTCCTTAT
791531 CAGTCGAGCCCCCTAAAGGGTCCTTATCAGTCGAGCCTGCTTACGCA
131 CAGTCGAGCCCCCTAAAGGGTCCTTATCAGTCGAGCCTGCTTACGCA
791578 TCCTTAGGGTCGAGCACCTAAAGGTCCTCTCCTCTCCTTATCAGTCGAGCCCC
1 TCCTTAGGGTCGAGCACCTAAAGGTCCTCTCCTCTCCTTATCAGTCGAGCCCC
791631 TCTCCTTGAC
Statistics
Matches: 229, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
177 229 1.00
ACGTcount: A:0.20, C:0.34, G:0.19, T:0.26
Consensus pattern (177 bp):
TCCTTAGGGTCGAGCACCTAAAGGTCCTCTCCTCTCCTTATCAGTCGAGCCCCCTAAAGGGTCCT
TAACAGTCGAGCATGCTTGCGCATCCTTAACAGTCGAGCACCTAAAGGTCCTCTCCTCTCCTTAT
CAGTCGAGCCCCCTAAAGGGTCCTTATCAGTCGAGCCTGCTTACGCA
Left flanking sequence: Indices 790724 -- 791223
TTGCCCCATTCCTTAAAGGTCAAGCAAGCAAGAAATTTCAATTTGACTTATTGGGCTCTCAAATA
AGTAACTAAAAGGCGTTGGTCGAGTCACTAACGTACCTCTCCTTACCAGTCGAGCCGATGGCGGC
CTTATTAGTCGAGCGTGCTTACGCACCCTGACGGACCTCCCTTTTGGGGCGTATGGGGTGCTTAT
TTGGTGAGGGGCCCCAAAAGAGAGTTGTTCGTCTCCTCTCCTCTCCTCTCCCTCTCCTCTCCCTC
TCCTCTCCCTCTCCTTAACAGTCGAGCACCTAAAGGTCCTCTCCTCTCCTTATCAGTCGAGCCCC
CTAAAGGGTCCTTATCAGTCGAGCACCTAAAGGTTCAATTTACTTATTGGGTGGGGGGGCGTTGG
TCGAGCCCTGCCGGGGGCATCCTCTCCTTAACAGTCGAGCATGCTTGCGCATCCTCTCCCTCTCC
CTTAAGGTCGAGCACCTAAAGGTCCTATGGTCGAGCACCTAAAGG
Right flanking sequence: Indices 791631 -- 792130
TCTCCTTGACAGTCGAGTGTGCTTACGCACCCTGTCGGTCCTCTCTTTTGGGGCCCCTTCCCCCC
CCAGAGAGTTGCTCGTCTCCTCTCCTTATCAGTCGAGCCCCTGACGGACCTCCCACGTTTACTCA
CCCTGCCGGACCTCTCCTTATCAGTCGAGCCTGCTTACGCATCCTTTGAGTTTCAGATCTCAGAG
CGGGCTTTGACCATGTCTCCCGAGAAAGATCAGTACATATGGCGTAAGACGATTTCACATATCGA
GGTCGGTATGGGATCGGGTGTGTTTCCCGTCTGACAATGATGCCCGCCCGGGAAGACATCTCAGA
TCTTCGTGCCGGCGCTTTTGGCTATTCCTAAATGGCACGTGTGGATAGCAGATGTTGCTATGGGC
ATATGTCATTATGCATTCATTCATTATATATGTCATTACGGTTTAGCAGACAATGCATATATTAT
AGATGTCATTACGCTCTCGAATCCAGTCATGATGCGCAAGCAGGC
Found at i:791473 original size:88 final size:88
Alignment explanation
Indices: 791224--791630 Score: 697
Period size: 89 Copynumber: 4.6 Consensus size: 88
791214 CACCTAAAGG
*
791224 TCCTTATGGTCGAGCACCTAAAGGTCCTCTCCTCTCCTTATCAGTCGAGCCCCCTAAAGGGTCCT
1 TCCTTACGGTCGAGCACCTAAAGGTCCTCTCCTCTCCTTATCAGTCGAGCCCCCTAAAGGGTCCT
*
791289 TAACAGTCGAGCATGCTTGCGCA
66 TAACAGTCGAGCATGCTTACGCA
*
791312 TCCTTAACAGTCGAGCACCTAAAGGTCCTCTCCTCTCCTTATCAGTCGAGCCCCCTAAAGGGTCC
1 TCCTT-ACGGTCGAGCACCTAAAGGTCCTCTCCTCTCCTTATCAGTCGAGCCCCCTAAAGGGTCC
* *
791377 TTATCAGTCGAGCCTGCTTACGCA
65 TTAACAGTCGAGCATGCTTACGCA
*
791401 TCCTTAGGGTCGAGCACCTAAAGGTCCTCTCCTCTCCTTATCAGTCGAGCCCCCTAAAGGGTCCT
1 TCCTTACGGTCGAGCACCTAAAGGTCCTCTCCTCTCCTTATCAGTCGAGCCCCCTAAAGGGTCCT
*
791466 TAACAGTCGAGCATGCTTGCGCA
66 TAACAGTCGAGCATGCTTACGCA
*
791489 TCCTTAACAGTCGAGCACCTAAAGGTCCTCTCCTCTCCTTATCAGTCGAGCCCCCTAAAGGGTCC
1 TCCTT-ACGGTCGAGCACCTAAAGGTCCTCTCCTCTCCTTATCAGTCGAGCCCCCTAAAGGGTCC
* *
791554 TTATCAGTCGAGCCTGCTTACGCA
65 TTAACAGTCGAGCATGCTTACGCA
*
791578 TCCTTAGGGTCGAGCACCTAAAGGTCCTCTCCTCTCCTTATCAGTCGAGCCCC
1 TCCTTACGGTCGAGCACCTAAAGGTCCTCTCCTCTCCTTATCAGTCGAGCCCC
791631 TCTCCTTGAC
Statistics
Matches: 300, Mismatches: 17, Indels: 4
0.93 0.05 0.01
Matches are distributed among these distances:
88 134 0.45
89 166 0.55
ACGTcount: A:0.20, C:0.34, G:0.19, T:0.26
Consensus pattern (88 bp):
TCCTTACGGTCGAGCACCTAAAGGTCCTCTCCTCTCCTTATCAGTCGAGCCCCCTAAAGGGTCCT
TAACAGTCGAGCATGCTTACGCA
Left flanking sequence: Indices 790724 -- 791223
TTGCCCCATTCCTTAAAGGTCAAGCAAGCAAGAAATTTCAATTTGACTTATTGGGCTCTCAAATA
AGTAACTAAAAGGCGTTGGTCGAGTCACTAACGTACCTCTCCTTACCAGTCGAGCCGATGGCGGC
CTTATTAGTCGAGCGTGCTTACGCACCCTGACGGACCTCCCTTTTGGGGCGTATGGGGTGCTTAT
TTGGTGAGGGGCCCCAAAAGAGAGTTGTTCGTCTCCTCTCCTCTCCTCTCCCTCTCCTCTCCCTC
TCCTCTCCCTCTCCTTAACAGTCGAGCACCTAAAGGTCCTCTCCTCTCCTTATCAGTCGAGCCCC
CTAAAGGGTCCTTATCAGTCGAGCACCTAAAGGTTCAATTTACTTATTGGGTGGGGGGGCGTTGG
TCGAGCCCTGCCGGGGGCATCCTCTCCTTAACAGTCGAGCATGCTTGCGCATCCTCTCCCTCTCC
CTTAAGGTCGAGCACCTAAAGGTCCTATGGTCGAGCACCTAAAGG
Right flanking sequence: Indices 791631 -- 792130
TCTCCTTGACAGTCGAGTGTGCTTACGCACCCTGTCGGTCCTCTCTTTTGGGGCCCCTTCCCCCC
CCAGAGAGTTGCTCGTCTCCTCTCCTTATCAGTCGAGCCCCTGACGGACCTCCCACGTTTACTCA
CCCTGCCGGACCTCTCCTTATCAGTCGAGCCTGCTTACGCATCCTTTGAGTTTCAGATCTCAGAG
CGGGCTTTGACCATGTCTCCCGAGAAAGATCAGTACATATGGCGTAAGACGATTTCACATATCGA
GGTCGGTATGGGATCGGGTGTGTTTCCCGTCTGACAATGATGCCCGCCCGGGAAGACATCTCAGA
TCTTCGTGCCGGCGCTTTTGGCTATTCCTAAATGGCACGTGTGGATAGCAGATGTTGCTATGGGC
ATATGTCATTATGCATTCATTCATTATATATGTCATTACGGTTTAGCAGACAATGCATATATTAT
AGATGTCATTACGCTCTCGAATCCAGTCATGATGCGCAAGCAGGC
Found at i:791634 original size:21 final size:21
Alignment explanation
Indices: 791608--791647 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
791598 AAGGTCCTCT
791608 CCTCTCCTT-ATCAGTCGAGCC
1 CCTCTCCTTGA-CAGTCGAGCC
791629 CCTCTCCTTGACAGTCGAG
1 CCTCTCCTTGACAGTCGAG
791648 TGTGCTTACG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 17 0.94
22 1 0.06
ACGTcount: A:0.15, C:0.40, G:0.17, T:0.28
Consensus pattern (21 bp):
CCTCTCCTTGACAGTCGAGCC
Left flanking sequence: Indices 791108 -- 791607
CGTTGGTCGAGCCCTGCCGGGGGCATCCTCTCCTTAACAGTCGAGCATGCTTGCGCATCCTCTCC
CTCTCCCTTAAGGTCGAGCACCTAAAGGTCCTATGGTCGAGCACCTAAAGGTCCTTATGGTCGAG
CACCTAAAGGTCCTCTCCTCTCCTTATCAGTCGAGCCCCCTAAAGGGTCCTTAACAGTCGAGCAT
GCTTGCGCATCCTTAACAGTCGAGCACCTAAAGGTCCTCTCCTCTCCTTATCAGTCGAGCCCCCT
AAAGGGTCCTTATCAGTCGAGCCTGCTTACGCATCCTTAGGGTCGAGCACCTAAAGGTCCTCTCC
TCTCCTTATCAGTCGAGCCCCCTAAAGGGTCCTTAACAGTCGAGCATGCTTGCGCATCCTTAACA
GTCGAGCACCTAAAGGTCCTCTCCTCTCCTTATCAGTCGAGCCCCCTAAAGGGTCCTTATCAGTC
GAGCCTGCTTACGCATCCTTAGGGTCGAGCACCTAAAGGTCCTCT
Right flanking sequence: Indices 791648 -- 792147
TGTGCTTACGCACCCTGTCGGTCCTCTCTTTTGGGGCCCCTTCCCCCCCCAGAGAGTTGCTCGTC
TCCTCTCCTTATCAGTCGAGCCCCTGACGGACCTCCCACGTTTACTCACCCTGCCGGACCTCTCC
TTATCAGTCGAGCCTGCTTACGCATCCTTTGAGTTTCAGATCTCAGAGCGGGCTTTGACCATGTC
TCCCGAGAAAGATCAGTACATATGGCGTAAGACGATTTCACATATCGAGGTCGGTATGGGATCGG
GTGTGTTTCCCGTCTGACAATGATGCCCGCCCGGGAAGACATCTCAGATCTTCGTGCCGGCGCTT
TTGGCTATTCCTAAATGGCACGTGTGGATAGCAGATGTTGCTATGGGCATATGTCATTATGCATT
CATTCATTATATATGTCATTACGGTTTAGCAGACAATGCATATATTATAGATGTCATTACGCTCT
CGAATCCAGTCATGATGCGCAAGCAGGCTCGACCATAAGCTAGTT
Found at i:795177 original size:22 final size:22
Alignment explanation
Indices: 795149--795192 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
795139 GATCGATAAT
795149 CTAACTTATTTATTCCCCGCCC
1 CTAACTTATTTATTCCCCGCCC
*
795171 CTAACTTATTTATTCCCGGCCC
1 CTAACTTATTTATTCCCCGCCC
795193 GTGTTGATCG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.18, C:0.39, G:0.07, T:0.36
Consensus pattern (22 bp):
CTAACTTATTTATTCCCCGCCC
Left flanking sequence: Indices 794649 -- 795148
TGAAAGCCCCCAACCAACTGACTCATACCAAGTTTCTACCACCGCTTTCAGTTCCGAATCTCAAG
CATATTGTTGTCGGGCCCGAACCCCCATTTCTCATGAAATCATCCAATTCTCTCACTGTAATACG
TAATAAACCCAACGAACTACAGGACCCTGATCAATGAGGAGGGCCAGAGGCGGGGACAGCGAGGG
GGGGAATGAAATTGACCCGTGGCTGCTTTCGTCCCTGACCCCCTTGGCATTCAAGCATCCAACAC
TATTAGTTCCAATTATCTCGCTGTCATCAGTATAAATGGGGCCCGCTACCAACCTAATGAAGGCA
TTCTTTCTCTCACCATCAACCGAATCCATTCAGCACCGTCAAATGGAAGGTGACCGCATCATTTC
ATCATCATGTCATATTATCTACCTGTAATATGAAAAGCCAGGTCTTTCAATAGCATGACAACCCA
GTGAGTTGTTCATCAACGTTGAATGATAAGCTGTTGATCGATAAT
Right flanking sequence: Indices 795193 -- 795692
GTGTTGATCGATAATCTAACTTATTTATTCCCCGCCCCTAACTTATTTATTCCCGGCCCCCCCTA
ACTTAGTGAGAATACCTGTTATCTCAGTATTAGTGGAATTGGTCCCAGGCTCCCTAAGGAAGTGA
GGTCCCTGAATGCTTCATCAAGAGGCTATTTCTATCTATATCTGATAAGACTGGCCCTCCCGCTC
AGTATCTTTGCTTTCAAACCTTACCGCATTTCAATTGCCTCTGAAAACGTATTGAAATTGAACGA
ATTCATTAGCGAATAACTTACCTATGAATCTCAATATGAAACCTATTCATGCCGCATCAATGCAC
TTCGAATTTCAGAATGAAATGAATGAATTTGACGGATCTCCTACCTACCTAATCGTGGAAAGAAA
ACGTAATAATATAAGATATAAGATCAGAATAGAACCTATTCATCTCGATAGAACACGAATGACAT
GTCATGTTGGCGAATATAATGACCTAAATGAAATAGCCGCATGCT
Found at i:795227 original size:59 final size:59
Alignment explanation
Indices: 795135--795251 Score: 234
Period size: 59 Copynumber: 2.0 Consensus size: 59
795125 AATGATAAGC
795135 TGTTGATCGATAATCTAACTTATTTATTCCCCGCCCCTAACTTATTTATTCCCGGCCCG
1 TGTTGATCGATAATCTAACTTATTTATTCCCCGCCCCTAACTTATTTATTCCCGGCCCG
795194 TGTTGATCGATAATCTAACTTATTTATTCCCCGCCCCTAACTTATTTATTCCCGGCCC
1 TGTTGATCGATAATCTAACTTATTTATTCCCCGCCCCTAACTTATTTATTCCCGGCCC
795252 CCCCTAACTT
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
59 58 1.00
ACGTcount: A:0.21, C:0.31, G:0.11, T:0.38
Consensus pattern (59 bp):
TGTTGATCGATAATCTAACTTATTTATTCCCCGCCCCTAACTTATTTATTCCCGGCCCG
Left flanking sequence: Indices 794635 -- 795134
ACCCCCATTTCTCATGAAAGCCCCCAACCAACTGACTCATACCAAGTTTCTACCACCGCTTTCAG
TTCCGAATCTCAAGCATATTGTTGTCGGGCCCGAACCCCCATTTCTCATGAAATCATCCAATTCT
CTCACTGTAATACGTAATAAACCCAACGAACTACAGGACCCTGATCAATGAGGAGGGCCAGAGGC
GGGGACAGCGAGGGGGGGAATGAAATTGACCCGTGGCTGCTTTCGTCCCTGACCCCCTTGGCATT
CAAGCATCCAACACTATTAGTTCCAATTATCTCGCTGTCATCAGTATAAATGGGGCCCGCTACCA
ACCTAATGAAGGCATTCTTTCTCTCACCATCAACCGAATCCATTCAGCACCGTCAAATGGAAGGT
GACCGCATCATTTCATCATCATGTCATATTATCTACCTGTAATATGAAAAGCCAGGTCTTTCAAT
AGCATGACAACCCAGTGAGTTGTTCATCAACGTTGAATGATAAGC
Right flanking sequence: Indices 795252 -- 795751
CCCCTAACTTAGTGAGAATACCTGTTATCTCAGTATTAGTGGAATTGGTCCCAGGCTCCCTAAGG
AAGTGAGGTCCCTGAATGCTTCATCAAGAGGCTATTTCTATCTATATCTGATAAGACTGGCCCTC
CCGCTCAGTATCTTTGCTTTCAAACCTTACCGCATTTCAATTGCCTCTGAAAACGTATTGAAATT
GAACGAATTCATTAGCGAATAACTTACCTATGAATCTCAATATGAAACCTATTCATGCCGCATCA
ATGCACTTCGAATTTCAGAATGAAATGAATGAATTTGACGGATCTCCTACCTACCTAATCGTGGA
AAGAAAACGTAATAATATAAGATATAAGATCAGAATAGAACCTATTCATCTCGATAGAACACGAA
TGACATGTCATGTTGGCGAATATAATGACCTAAATGAAATAGCCGCATGCTCGTAAGTAATAATA
ATGCTTCCCGACCGATCGACCGACCAAAAGGCAAAGTGTAACGTA
Found at i:795236 original size:22 final size:22
Alignment explanation
Indices: 795208--795252 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
795198 GATCGATAAT
795208 CTAACTTATTTATTCCCCGCCC
1 CTAACTTATTTATTCCCCGCCC
*
795230 CTAACTTATTTATTCCCGGCCC
1 CTAACTTATTTATTCCCCGCCC
795252 C
1 C
795253 CCCTAACTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.18, C:0.40, G:0.07, T:0.36
Consensus pattern (22 bp):
CTAACTTATTTATTCCCCGCCC
Left flanking sequence: Indices 794708 -- 795207
CTCAAGCATATTGTTGTCGGGCCCGAACCCCCATTTCTCATGAAATCATCCAATTCTCTCACTGT
AATACGTAATAAACCCAACGAACTACAGGACCCTGATCAATGAGGAGGGCCAGAGGCGGGGACAG
CGAGGGGGGGAATGAAATTGACCCGTGGCTGCTTTCGTCCCTGACCCCCTTGGCATTCAAGCATC
CAACACTATTAGTTCCAATTATCTCGCTGTCATCAGTATAAATGGGGCCCGCTACCAACCTAATG
AAGGCATTCTTTCTCTCACCATCAACCGAATCCATTCAGCACCGTCAAATGGAAGGTGACCGCAT
CATTTCATCATCATGTCATATTATCTACCTGTAATATGAAAAGCCAGGTCTTTCAATAGCATGAC
AACCCAGTGAGTTGTTCATCAACGTTGAATGATAAGCTGTTGATCGATAATCTAACTTATTTATT
CCCCGCCCCTAACTTATTTATTCCCGGCCCGTGTTGATCGATAAT
Right flanking sequence: Indices 795253 -- 795752
CCCTAACTTAGTGAGAATACCTGTTATCTCAGTATTAGTGGAATTGGTCCCAGGCTCCCTAAGGA
AGTGAGGTCCCTGAATGCTTCATCAAGAGGCTATTTCTATCTATATCTGATAAGACTGGCCCTCC
CGCTCAGTATCTTTGCTTTCAAACCTTACCGCATTTCAATTGCCTCTGAAAACGTATTGAAATTG
AACGAATTCATTAGCGAATAACTTACCTATGAATCTCAATATGAAACCTATTCATGCCGCATCAA
TGCACTTCGAATTTCAGAATGAAATGAATGAATTTGACGGATCTCCTACCTACCTAATCGTGGAA
AGAAAACGTAATAATATAAGATATAAGATCAGAATAGAACCTATTCATCTCGATAGAACACGAAT
GACATGTCATGTTGGCGAATATAATGACCTAAATGAAATAGCCGCATGCTCGTAAGTAATAATAA
TGCTTCCCGACCGATCGACCGACCAAAAGGCAAAGTGTAACGTAT
Found at i:795261 original size:25 final size:22
Alignment explanation
Indices: 795208--795262 Score: 74
Period size: 22 Copynumber: 2.4 Consensus size: 22
795198 GATCGATAAT
*
795208 CTAACTTATTTATTCCCCGCCC
1 CTAACTTATTTATTCCCCCCCC
795230 CTAACTTATTTATTCCCGGCCCCCC
1 CTAACTTATTTATT-CC--CCCCCC
795255 CTAACTTA
1 CTAACTTA
795263 GTGAGAATAC
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
22 14 0.48
23 2 0.07
25 13 0.45
ACGTcount: A:0.20, C:0.40, G:0.05, T:0.35
Consensus pattern (22 bp):
CTAACTTATTTATTCCCCCCCC
Left flanking sequence: Indices 794708 -- 795207
CTCAAGCATATTGTTGTCGGGCCCGAACCCCCATTTCTCATGAAATCATCCAATTCTCTCACTGT
AATACGTAATAAACCCAACGAACTACAGGACCCTGATCAATGAGGAGGGCCAGAGGCGGGGACAG
CGAGGGGGGGAATGAAATTGACCCGTGGCTGCTTTCGTCCCTGACCCCCTTGGCATTCAAGCATC
CAACACTATTAGTTCCAATTATCTCGCTGTCATCAGTATAAATGGGGCCCGCTACCAACCTAATG
AAGGCATTCTTTCTCTCACCATCAACCGAATCCATTCAGCACCGTCAAATGGAAGGTGACCGCAT
CATTTCATCATCATGTCATATTATCTACCTGTAATATGAAAAGCCAGGTCTTTCAATAGCATGAC
AACCCAGTGAGTTGTTCATCAACGTTGAATGATAAGCTGTTGATCGATAATCTAACTTATTTATT
CCCCGCCCCTAACTTATTTATTCCCGGCCCGTGTTGATCGATAAT
Right flanking sequence: Indices 795263 -- 795762
GTGAGAATACCTGTTATCTCAGTATTAGTGGAATTGGTCCCAGGCTCCCTAAGGAAGTGAGGTCC
CTGAATGCTTCATCAAGAGGCTATTTCTATCTATATCTGATAAGACTGGCCCTCCCGCTCAGTAT
CTTTGCTTTCAAACCTTACCGCATTTCAATTGCCTCTGAAAACGTATTGAAATTGAACGAATTCA
TTAGCGAATAACTTACCTATGAATCTCAATATGAAACCTATTCATGCCGCATCAATGCACTTCGA
ATTTCAGAATGAAATGAATGAATTTGACGGATCTCCTACCTACCTAATCGTGGAAAGAAAACGTA
ATAATATAAGATATAAGATCAGAATAGAACCTATTCATCTCGATAGAACACGAATGACATGTCAT
GTTGGCGAATATAATGACCTAAATGAAATAGCCGCATGCTCGTAAGTAATAATAATGCTTCCCGA
CCGATCGACCGACCAAAAGGCAAAGTGTAACGTATTGACTCATAT
Found at i:796113 original size:20 final size:20
Alignment explanation
Indices: 796088--796146 Score: 109
Period size: 20 Copynumber: 3.0 Consensus size: 20
796078 ATCTATCTGC
796088 TTGGTTCACTAGCTGCTTGG
1 TTGGTTCACTAGCTGCTTGG
*
796108 TTGGTTCACCAGCTGCTTGG
1 TTGGTTCACTAGCTGCTTGG
796128 TTGGTTCACTAGCTGCTTG
1 TTGGTTCACTAGCTGCTTG
796147 AATGACTAGC
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 37 1.00
ACGTcount: A:0.10, C:0.22, G:0.29, T:0.39
Consensus pattern (20 bp):
TTGGTTCACTAGCTGCTTGG
Left flanking sequence: Indices 795588 -- 796087
ATAATATAAGATATAAGATCAGAATAGAACCTATTCATCTCGATAGAACACGAATGACATGTCAT
GTTGGCGAATATAATGACCTAAATGAAATAGCCGCATGCTCGTAAGTAATAATAATGCTTCCCGA
CCGATCGACCGACCAAAAGGCAAAGTGTAACGTATTGACTCATATTCTTTCGGTAACTAGAGAGA
GAATAAAGAAAATCAATAATGAAGTGAAAGGCTATCGCTGGTCATGAATTCTAATTGTCTGCTAA
AGCGTAATTACTAATTGAAAAGCATAATGACATATATAATATATGCATTCAGATTAGCACCTACT
TACCTTGCCCTCAGAAGCGCAAGCCCCTCCGGGACCTTACCAAGTGCCATCATTTGAGGGGAACA
AACAGAGAAGTACGGTGATTGGATTCGAGAGAGCGTAATTACATATATAATTCATGACCAGCAGC
CACTGACTTATTGGCTCGGTCGGCTCGTAATGTAGATCTATCTGC
Right flanking sequence: Indices 796147 -- 796646
AATGACTAGCTAGGAAATGAGATCTCCGAATTCCCTTTAAGCAAGTAATGGCTTTCATTGAGAAA
GTAATCAATGCCAAGTAATCGAAGCTTATGCAAGCTTATCTAGGCTTATCCTATCCTCGCTTCCA
CCCACTTATTCATTGCCTGTACAGGGGGATATAGTTCCTTATCATACGTGGAAGAATTGAGGACT
GCCCCTCCAAAGCACTCAACCTGGTAAGATAGAGCTTGCTTTCCCTGCAAGAACACTCGCTCCTC
AGGTTGTCCGAGGTGATTCGACCAGCCGTTGTTTCTTGTCCCAGCCCGGGGTGATTCGACCGACC
ATCCATTGTTTCTTGGACCAGCCTGCAAGTCACTCTGCAAGTCACGATCGGCCCTCTACTCTGCC
TACACTAACTAAAAGCAAGCCGTTTTCTGTTGGACCAGTTCCGGTGCTCGCTCCGTGCCATCCAT
GCCATGGTGGGTCGATGTGTCCCGTTACTATTCATTCTGCATGCC
Found at i:797934 original size:20 final size:20
Alignment explanation
Indices: 797909--797948 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
797899 TAGCTACCTT
797909 TCTTTGCTCACCTTACCAGA
1 TCTTTGCTCACCTTACCAGA
797929 TCTTTGCTCACCTTACCAGA
1 TCTTTGCTCACCTTACCAGA
797949 ATAAGATTTC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.20, C:0.35, G:0.10, T:0.35
Consensus pattern (20 bp):
TCTTTGCTCACCTTACCAGA
Left flanking sequence: Indices 797409 -- 797908
GCCGGAAATCAATCTATGGGCAACCGTTAATCGGTACCTCCTGAATGATGTACTCTTGGCATCAA
CTGATTGAGTATCAGCATCGATTCCTGTCATTGACTCCTGGATGAGTAATGGGCACGTTCTAGAG
CTTCATTCGTGCACTGACCAGAGTTCTAGCTTGACCGGGAGTCAGCATCATTCATGCACCGTCGT
CTAGAGCTTCCTGCATAGAAAAGAGCTACCCGCATGGACAATAGGTTCCATTCCTCTGCACTGAT
AAGAGTTGTAGCACTGACCGGAGCTTATAGGGGAAAGAGTCTCCAGCCCCACCAAGCCCGACAGA
AGCCTTTCAACCCATAAAAGTCAAGAGAGCTAGCTCTTTTCTTGGCAAGCTTACCTTCAATTAGG
GGCATTAGGTAAGGAGGTTTATCGGTTATTAGGGCATAAAGAAGGCATCATTAGGTGAAAAGGAG
TGTTTCCTGGGGGCCGGGCTCTGCAGGACAACCAGTAGCTACCTT
Right flanking sequence: Indices 797949 -- 798448
ATAAGATTTCCTAGCATCTGACCTTAACTAGCAGTAGCTGTACCAGTCTCAAAGGTACCAGTACT
AGTACCTATAGCTTTCCTGAGCTCTCCTTGTACCAGTAACTAAGTGTATGTCTGTTTGATTGGGT
TGGTTGAGTTAGCTAGGGAGAATAGCTCTTGTGAGTAGGTCTAGTAATAAGGATGGTAGTAGTTC
TAGTAATAAGGATAGCTAGCTTGTATGTCTGGTATGCGTGGATTGATGGGTGTGAGTATGGGGGT
AAGTAGCTTGCAGTATGGCTTGTAAGTTTAGCTAGGTTGGATGGTTGGTTCAATCAATCTCTGTA
TGCCGGTAAGGTTGCTTGCACTAGTATTTGATTGCTTTAGGTGCGATACGAGGTACAGTTCACAC
AGCAATGATGCAACGGTTACCCTTCACTTACGAGACCTTACGGTTGTTCCCACCTCTCGCTCGAT
CCCTTACGGTTTCCATCTCTAGATCCAGTTGAAGCCCCTTGAATT
Found at i:798699 original size:17 final size:17
Alignment explanation
Indices: 798677--798710 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
798667 CAGCATCTAA
798677 GCCATCAGTAGCATAGG
1 GCCATCAGTAGCATAGG
798694 GCCATCAGTAGCATAGG
1 GCCATCAGTAGCATAGG
798711 TAGCAGCATA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.29, C:0.24, G:0.29, T:0.18
Consensus pattern (17 bp):
GCCATCAGTAGCATAGG
Left flanking sequence: Indices 798177 -- 798676
ATGCGTGGATTGATGGGTGTGAGTATGGGGGTAAGTAGCTTGCAGTATGGCTTGTAAGTTTAGCT
AGGTTGGATGGTTGGTTCAATCAATCTCTGTATGCCGGTAAGGTTGCTTGCACTAGTATTTGATT
GCTTTAGGTGCGATACGAGGTACAGTTCACACAGCAATGATGCAACGGTTACCCTTCACTTACGA
GACCTTACGGTTGTTCCCACCTCTCGCTCGATCCCTTACGGTTTCCATCTCTAGATCCAGTTGAA
GCCCCTTGAATTGAAATGGTTAAGCGGTGGCTACGAGAGCCAGCCATACCTTCGTGATCCATCAG
CACTTGCAGCTTATCCACCACCATCTTGACCATATCCATATATAGATGCTTAGCTTGACCTAGTA
CCTGTTAACCCAGTAGTAGATTCAGTACTCGTACCAGTACCAGCAGCATATCCAATAGCACGAGT
AGCAAAGACAGGAGCAAAAGCATAAAAGCTAGGACCAGCATCTAA
Right flanking sequence: Indices 798711 -- 799210
TAGCAGCATAATCAGCAGCTGAAGGGGCATCAGTTTCACCAGTCCCAGCTTCCTCAGTTTCACCA
GCGTCAATAAAGGGGTCATCATTCCCAGAAGCACCAGTTTCATCCTTTTTCATTCCCAGGATCAG
TTCCAGGATCATTTCTAGAAGCATTATTCCCTGCATCCCCAGAAGCACCAGTTTCATTGGCATCC
CCATCAACACCAGTTGAATAAGTGTCATCTCCAGCTTCATTAGAACCATATGAGCCAGGCTCAGC
AAAAGTAGCCTCAGTTCCAGGATCAGCCACATAGCCCCATAGGCAACAGTATAATAGCCAGTAAG
TTAGAGAAAGAACTCCGGTCAGTCAATCTAGAATAAAGCCCTACTCATCAAACCTATACTCAGTG
CGTGAAGCTCTAGTCACATGTGGAAGCTCTACTCAGTCAGTGCTACTCTCTTGTCATTGCTAAGG
TCGATCATTGCCAGCCGGTCCTAGTCCAGTCAGAGCCAGAAAGTC
Found at i:799555 original size:13 final size:13
Alignment explanation
Indices: 799537--799568 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
799527 CCAGGAACAG
799537 AAAGCCTTCACCA
1 AAAGCCTTCACCA
*
799550 AAAGCCTTCACCG
1 AAAGCCTTCACCA
799563 AAAGCC
1 AAAGCC
799569 ATTAGTCAGA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.38, C:0.38, G:0.12, T:0.12
Consensus pattern (13 bp):
AAAGCCTTCACCA
Left flanking sequence: Indices 799037 -- 799536
TAGAGAAAGAACTCCGGTCAGTCAATCTAGAATAAAGCCCTACTCATCAAACCTATACTCAGTGC
GTGAAGCTCTAGTCACATGTGGAAGCTCTACTCAGTCAGTGCTACTCTCTTGTCATTGCTAAGGT
CGATCATTGCCAGCCGGTCCTAGTCCAGTCAGAGCCAGAAAGTCATACATAGCCAGTCATAGCCA
TTGATAAGAATTTGATTTGGATTTCTTGATGAGTCTGCTGCTTCCCCCCCAAACAAGAGCCAATC
GATCGATGAGGAGATGGTGGAGCTGGATGATTAGGATTCTTCCAACCGTTAGGATTCTTCCAAGA
GGGATGAGGAGGTGGAGCTGGATGAGTCACTATACCAGAGACAGTATTCCAAGAGGGGGGGATAA
CCAGGAGCCAGCCAGAAGCCTAAATAAGTCCAACAGTAGCCTTTAGTCTTTCACCTTTAGCCTCA
CCTTTCACCTTTTGCCAGAACCCCCCCCCCATTCACCAGGAACAG
Right flanking sequence: Indices 799569 -- 800068
ATTAGTCAGAAGTCAAGTCCACCGGGGCCACACCTTTAGCCTTTAGCCTCTCACCAGAATACTTT
TGCCTTTTCATCGTGTGTTAGGGGCCATATCCTCTCGGCTAGTGGTGATGTGAGCCTTCCTTATC
ACTTCCTTTTCTCGGGTCTGTGGTGAGGGGGGACATCTCTTTTCTCGTCTGGCGGCCTTCTCTCT
CTGTCGTCTGTTGGCAACTGGGCTCTCTCCTCTTCTGGTGGCAACTTGGTAACCTCAATCACAAT
CTCTTTTCTGGTGGGGAACATGGGAAACATCATCTCTCCTCTCGCGTATGGTGAAAACTTGGGAA
CTAAGCAATATGCTCGTATGTAAACAACTTATCTCAATATCTCTCGTCTGATAGCAACTTGAACT
CGATCAATATCTCGTTATCGTGGCAACTTGGCTGCAATGAGTGGGTGAGTTTGGGGAATGGGTGC
TAAGTCTCACCTCCCCCTGGCCGCTCCCTCCTTCTGTCTAGCAGC
Found at i:800227 original size:20 final size:20
Alignment explanation
Indices: 800204--800274 Score: 56
Period size: 20 Copynumber: 3.5 Consensus size: 20
800194 CCGTCGCGTT
800204 CACATAGTCGTCGTTCACTG
1 CACATAGTCGTCGTTCACTG
* * * *
800224 CACATAG-C-CCCTGTCGCGTT
1 CACATAGTCGTCGT-TCAC-TG
* *
800244 CATATAGTCATCGTTCACTG
1 CACATAGTCGTCGTTCACTG
800264 CACATAGTCGT
1 CACATAGTCGT
800275 TTCGCCCCTA
Statistics
Matches: 36, Mismatches: 11, Indels: 8
0.65 0.20 0.15
Matches are distributed among these distances:
18 2 0.06
19 4 0.11
20 24 0.67
21 4 0.11
22 2 0.06
ACGTcount: A:0.21, C:0.31, G:0.18, T:0.30
Consensus pattern (20 bp):
CACATAGTCGTCGTTCACTG
Left flanking sequence: Indices 799704 -- 800203
CTTTTCTCGGGTCTGTGGTGAGGGGGGACATCTCTTTTCTCGTCTGGCGGCCTTCTCTCTCTGTC
GTCTGTTGGCAACTGGGCTCTCTCCTCTTCTGGTGGCAACTTGGTAACCTCAATCACAATCTCTT
TTCTGGTGGGGAACATGGGAAACATCATCTCTCCTCTCGCGTATGGTGAAAACTTGGGAACTAAG
CAATATGCTCGTATGTAAACAACTTATCTCAATATCTCTCGTCTGATAGCAACTTGAACTCGATC
AATATCTCGTTATCGTGGCAACTTGGCTGCAATGAGTGGGTGAGTTTGGGGAATGGGTGCTAAGT
CTCACCTCCCCCTGGCCGCTCCCTCCTTCTGTCTAGCAGCAGCATTCATTTCTCTATCCGTGCCG
ACTTGGAGAAACTCAATAGATCATATAGTAACAACTTGGCTCAATCTCTTCTGGTGGTTCAATGG
TTGAGATTCTTGTGATTGTATCGCTCACATAGCCTCCGTCGCGTT
Right flanking sequence: Indices 800275 -- 800774
TTCGCCCCTATCCTCACGTGCTAGGCACACTCTCTCTAGCCACACACGTCTAGCCCCAACAAGAT
AATGGGTCTTGTCTCGCAAAACGATAGCCACATGGACCAGCCTCGTGTTCAACCAGCCTCTGCGA
TTGATTTCCATCAAGCCTCACGTCAATCCACACGTCTAACCATTGTATCGCAAAACGTCATAGCT
TCACATTCTTGCCACCCATTCCTTGAATCATTTAGCCGTGCTTTCCGCGATATCTATATATATGA
ATTTATGTATCTCGACTTTGAATGAAAAGAAATGAATTAATACTCCATCCATAGAGCAGCGAAAT
CACCCTAGCCTTATTGCCTTCTGACTTGCCCAAGGAGGGAGCGTGAGGAGACGTCCCACAAAGAC
CTCCCCTCCTTAGTCTATTAACCTCCACCGTGCCGCCCATAAAACACCTGAAAATAGGGGTGACT
CAATCCATAGTTTTTCTATCCGCTATTAGATAGATTTCATTTCTA
Found at i:800240 original size:40 final size:40
Alignment explanation
Indices: 800184--800270 Score: 140
Period size: 40 Copynumber: 2.2 Consensus size: 40
800174 TTGTATCGCT
*
800184 CACATAGCCTCCGTCGCGTTCACATAGTCGTCGTTCACTG
1 CACATAGCCTCCGTCGCGTTCACATAGTCATCGTTCACTG
*
800224 CACATAGCC-CCTGTCGCGTTCATATAGTCATCGTTCACTG
1 CACATAGCCTCC-GTCGCGTTCACATAGTCATCGTTCACTG
800264 CACATAG
1 CACATAG
800271 TCGTTTCGCC
Statistics
Matches: 44, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
39 2 0.05
40 42 0.95
ACGTcount: A:0.21, C:0.33, G:0.18, T:0.28
Consensus pattern (40 bp):
CACATAGCCTCCGTCGCGTTCACATAGTCATCGTTCACTG
Left flanking sequence: Indices 799684 -- 800183
TGAGCCTTCCTTATCACTTCCTTTTCTCGGGTCTGTGGTGAGGGGGGACATCTCTTTTCTCGTCT
GGCGGCCTTCTCTCTCTGTCGTCTGTTGGCAACTGGGCTCTCTCCTCTTCTGGTGGCAACTTGGT
AACCTCAATCACAATCTCTTTTCTGGTGGGGAACATGGGAAACATCATCTCTCCTCTCGCGTATG
GTGAAAACTTGGGAACTAAGCAATATGCTCGTATGTAAACAACTTATCTCAATATCTCTCGTCTG
ATAGCAACTTGAACTCGATCAATATCTCGTTATCGTGGCAACTTGGCTGCAATGAGTGGGTGAGT
TTGGGGAATGGGTGCTAAGTCTCACCTCCCCCTGGCCGCTCCCTCCTTCTGTCTAGCAGCAGCAT
TCATTTCTCTATCCGTGCCGACTTGGAGAAACTCAATAGATCATATAGTAACAACTTGGCTCAAT
CTCTTCTGGTGGTTCAATGGTTGAGATTCTTGTGATTGTATCGCT
Right flanking sequence: Indices 800271 -- 800770
TCGTTTCGCCCCTATCCTCACGTGCTAGGCACACTCTCTCTAGCCACACACGTCTAGCCCCAACA
AGATAATGGGTCTTGTCTCGCAAAACGATAGCCACATGGACCAGCCTCGTGTTCAACCAGCCTCT
GCGATTGATTTCCATCAAGCCTCACGTCAATCCACACGTCTAACCATTGTATCGCAAAACGTCAT
AGCTTCACATTCTTGCCACCCATTCCTTGAATCATTTAGCCGTGCTTTCCGCGATATCTATATAT
ATGAATTTATGTATCTCGACTTTGAATGAAAAGAAATGAATTAATACTCCATCCATAGAGCAGCG
AAATCACCCTAGCCTTATTGCCTTCTGACTTGCCCAAGGAGGGAGCGTGAGGAGACGTCCCACAA
AGACCTCCCCTCCTTAGTCTATTAACCTCCACCGTGCCGCCCATAAAACACCTGAAAATAGGGGT
GACTCAATCCATAGTTTTTCTATCCGCTATTAGATAGATTTCATT
Found at i:800947 original size:18 final size:19
Alignment explanation
Indices: 800919--800955 Score: 67
Period size: 18 Copynumber: 2.0 Consensus size: 19
800909 TTATAGCTAC
800919 TTGAGGGGAATACATAGTA
1 TTGAGGGGAATACATAGTA
800938 TTGA-GGGAATACATAGTA
1 TTGAGGGGAATACATAGTA
800956 GCTATTTCAG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 14 0.78
19 4 0.22
ACGTcount: A:0.38, C:0.05, G:0.30, T:0.27
Consensus pattern (19 bp):
TTGAGGGGAATACATAGTA
Left flanking sequence: Indices 800419 -- 800918
GCCTCACGTCAATCCACACGTCTAACCATTGTATCGCAAAACGTCATAGCTTCACATTCTTGCCA
CCCATTCCTTGAATCATTTAGCCGTGCTTTCCGCGATATCTATATATATGAATTTATGTATCTCG
ACTTTGAATGAAAAGAAATGAATTAATACTCCATCCATAGAGCAGCGAAATCACCCTAGCCTTAT
TGCCTTCTGACTTGCCCAAGGAGGGAGCGTGAGGAGACGTCCCACAAAGACCTCCCCTCCTTAGT
CTATTAACCTCCACCGTGCCGCCCATAAAACACCTGAAAATAGGGGTGACTCAATCCATAGTTTT
TCTATCCGCTATTAGATAGATTTCATTTCTATCACCCACCTTCCTCGCTGGCTAGCATAATTGCA
TATATAAGGCGCGATATCACTCTTTATCTATGGCACCCTAACAAAGCGTTACAGCCTGACATAAG
GACAAGGTAGAGTTATTTCATATTAGAACCTTACCTTATAGCTAC
Right flanking sequence: Indices 800956 -- 801455
GCTATTTCAGGACCTGCTACCACCTGAGCTAGCTAGATTTAGGGGAATAATACAAGGACTACCTT
TACCCCGAAAGAGCCGGTAAGAATTAAGCAACCCTGCTTCCCGACCGACCTTATCATCCTCCTCA
TTATAGTCCTCTTGGAATCAATAGCATATTGTTGAATAAGAAGAAGATCAGAAACGCCATCATTG
AGGCAGACAATGCAGCAATAGCCTCGGTTAAAGCAAACCCCGAAATGGCGTTATTGGAAAAGGTA
CTTTGAAATTGTGGTGGGTGTATTGAAATAGTGGGTTTCTGGTTGCTGGGCCGGCCTCTGAATAT
GAAGGTAAGGCCGTTCATGTTAACGTATGTAGAAAGCTTGTCTCAATTGCGATTTCCCTGAATAT
AGTCAATGTTGAATACGCTTTTCGTGATTTGATGCGACCCTGAATAGATTATAGAGGCCTTGCCT
CTTCGATCATAATCTTCTTTGACCCTGAATATTGATTAAGTTCCC
Found at i:802062 original size:88 final size:88
Alignment explanation
Indices: 801913--802111 Score: 380
Period size: 88 Copynumber: 2.3 Consensus size: 88
801903 GGGGCGGAGC
**
801913 CACTCACTATTCCGATGGTGAGGGTGCGTAAGCACACTCGACTGCCTTTGGTTACTTATTTGAGA
1 CACTCACTATTCATATGGTGAGGGTGCGTAAGCACACTCGACTGCCTTTGGTTACTTATTTGAGA
801978 GGAGGGGAGAGGGTGCGTTAGCA
66 GGAGGGGAGAGGGTGCGTTAGCA
802001 CACTCACTATTCATATGGTGAGGGTGCGTAAGCACACTCGACTGCCTTTGGTTACTTATTTGAGA
1 CACTCACTATTCATATGGTGAGGGTGCGTAAGCACACTCGACTGCCTTTGGTTACTTATTTGAGA
802066 GGAGGGGAGAGGGTGCGTTAGCA
66 GGAGGGGAGAGGGTGCGTTAGCA
802089 CACTCACTATTCATATGGTGAGG
1 CACTCACTATTCATATGGTGAGG
802112 ACCGGTAGGG
Statistics
Matches: 109, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
88 109 1.00
ACGTcount: A:0.23, C:0.19, G:0.31, T:0.27
Consensus pattern (88 bp):
CACTCACTATTCATATGGTGAGGGTGCGTAAGCACACTCGACTGCCTTTGGTTACTTATTTGAGA
GGAGGGGAGAGGGTGCGTTAGCA
Left flanking sequence: Indices 801413 -- 801912
TCGATCATAATCTTCTTTGACCCTGAATATTGATTAAGTTCCCCACATTTTCACCCTACCTACCA
GCCAGGCATATTACTTACGAGCATGCATGAATAGCAGAGCTAGCTCAGGTAATAGCAGGTCCTGA
CTTCAAGGCCCCTTACCCTTAGCAATAATCTTACCCTTCCTTCATAAGTAATATTCAGTTATATG
CGCAACTGCCTACCTAGTGATTCATTGTCTGGTACACCGTTCAGAGCTATAGCGATGAGCAGGAA
GAGCAGTTCACCTAATGACTGGCCTCTAGAACCCTAATAACCAGCGGGATGTCTGTATGTCCGTC
ATTTCTCCATAACCCTAATAACTCACTGTATAACCCTAATAACTGGCAAAGGCTGTTATTGACTG
TTTGTTAAGGCCAAAGGCAAAAGCTTTTCTTTCCTTCAAGGGTGTAAAGGGTGTTCTTTCTAAAT
ACTATAACCCGAAGAACAGGGCCCTATATTCTTTAGGGGCGGAGC
Right flanking sequence: Indices 802112 -- 802611
ACCGGTAGGGGCTCGACTGTCAAGGACCCTTTAGGGTGCGTAAGCACGCTCGACTAATAAGGACC
CTTTAGGGGGCTCGACTGATAAGGAGAGGAGAGGGGGCTCGACTGATAAGGAGAGGAGAGGGGCG
GAGCCACTCACTATTCATATGGTGAGGGGTCACTCACTATTCATATGGTGAGGGTGCGTTAGCAC
ACTCGACTGTCAAGGAGAGGAACGAAGTGCTCGACCAAAGCCCCCCCACCCAATAAGTAAACCCT
AAACGGAGTACTCACCCGTCGTGGGTGAGGTACGGTTAGTGACTCGCCCCTATGATCAATCGAGT
CACGGAGTTGCGAAGAAACCAAAATAGTGACCCATAACCCGATACCCCAAAAGACATAACTCCAT
AACACTACTGCTATTTTTAGCCCCTCAATCAAAGTTTCCATGGTGCTGTGTAACTTACTATTTTC
CTTGCCCCCCGGAGGGACAAGCGGCTTCGCACCTTGGCTTTATTC
Found at i:802198 original size:27 final size:27
Alignment explanation
Indices: 802181--802239 Score: 82
Period size: 27 Copynumber: 2.2 Consensus size: 27
802171 AGGACCCTTT
* *
802181 AGGGGGCTCGACTGATAAGGAGAGGAG
1 AGGGGGCTCGACTGATAAGGACACGAG
* *
802208 AGGGGGCTCGACTGATAAGGAGAGGAG
1 AGGGGGCTCGACTGATAAGGACACGAG
802235 AGGGG
1 AGGGG
802240 CGGAGCCACT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.29, C:0.10, G:0.51, T:0.10
Consensus pattern (27 bp):
AGGGGGCTCGACTGATAAGGACACGAG
Left flanking sequence: Indices 801681 -- 802180
CACCTAATGACTGGCCTCTAGAACCCTAATAACCAGCGGGATGTCTGTATGTCCGTCATTTCTCC
ATAACCCTAATAACTCACTGTATAACCCTAATAACTGGCAAAGGCTGTTATTGACTGTTTGTTAA
GGCCAAAGGCAAAAGCTTTTCTTTCCTTCAAGGGTGTAAAGGGTGTTCTTTCTAAATACTATAAC
CCGAAGAACAGGGCCCTATATTCTTTAGGGGCGGAGCCACTCACTATTCCGATGGTGAGGGTGCG
TAAGCACACTCGACTGCCTTTGGTTACTTATTTGAGAGGAGGGGAGAGGGTGCGTTAGCACACTC
ACTATTCATATGGTGAGGGTGCGTAAGCACACTCGACTGCCTTTGGTTACTTATTTGAGAGGAGG
GGAGAGGGTGCGTTAGCACACTCACTATTCATATGGTGAGGACCGGTAGGGGCTCGACTGTCAAG
GACCCTTTAGGGTGCGTAAGCACGCTCGACTAATAAGGACCCTTT
Right flanking sequence: Indices 802240 -- 802739
CGGAGCCACTCACTATTCATATGGTGAGGGGTCACTCACTATTCATATGGTGAGGGTGCGTTAGC
ACACTCGACTGTCAAGGAGAGGAACGAAGTGCTCGACCAAAGCCCCCCCACCCAATAAGTAAACC
CTAAACGGAGTACTCACCCGTCGTGGGTGAGGTACGGTTAGTGACTCGCCCCTATGATCAATCGA
GTCACGGAGTTGCGAAGAAACCAAAATAGTGACCCATAACCCGATACCCCAAAAGACATAACTCC
ATAACACTACTGCTATTTTTAGCCCCTCAATCAAAGTTTCCATGGTGCTGTGTAACTTACTATTT
TCCTTGCCCCCCGGAGGGACAAGCGGCTTCGCACCTTGGCTTTATTCTATCTATAGTTACCAAAA
TGATATGAGTAAATACGTTATAAAAGAAGTAATACTTCGTCAAGGAAGAGCCATGAAAAGCCGGG
GAGAGAAGTACCAGGTGAGGGAGCGTGTGAAGGTGAGGCGTAGCA
Found at i:802282 original size:26 final size:26
Alignment explanation
Indices: 802246--802295 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
802236 GGGGCGGAGC
802246 CACTCACTATTCATATGGTGAGGGGT
1 CACTCACTATTCATATGGTGAGGGGT
802272 CACTCACTATTCATATGGTGAGGG
1 CACTCACTATTCATATGGTGAGGG
802296 TGCGTTAGCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.24, C:0.20, G:0.26, T:0.30
Consensus pattern (26 bp):
CACTCACTATTCATATGGTGAGGGGT
Left flanking sequence: Indices 801746 -- 802245
ATAACCCTAATAACTCACTGTATAACCCTAATAACTGGCAAAGGCTGTTATTGACTGTTTGTTAA
GGCCAAAGGCAAAAGCTTTTCTTTCCTTCAAGGGTGTAAAGGGTGTTCTTTCTAAATACTATAAC
CCGAAGAACAGGGCCCTATATTCTTTAGGGGCGGAGCCACTCACTATTCCGATGGTGAGGGTGCG
TAAGCACACTCGACTGCCTTTGGTTACTTATTTGAGAGGAGGGGAGAGGGTGCGTTAGCACACTC
ACTATTCATATGGTGAGGGTGCGTAAGCACACTCGACTGCCTTTGGTTACTTATTTGAGAGGAGG
GGAGAGGGTGCGTTAGCACACTCACTATTCATATGGTGAGGACCGGTAGGGGCTCGACTGTCAAG
GACCCTTTAGGGTGCGTAAGCACGCTCGACTAATAAGGACCCTTTAGGGGGCTCGACTGATAAGG
AGAGGAGAGGGGGCTCGACTGATAAGGAGAGGAGAGGGGCGGAGC
Right flanking sequence: Indices 802296 -- 802795
TGCGTTAGCACACTCGACTGTCAAGGAGAGGAACGAAGTGCTCGACCAAAGCCCCCCCACCCAAT
AAGTAAACCCTAAACGGAGTACTCACCCGTCGTGGGTGAGGTACGGTTAGTGACTCGCCCCTATG
ATCAATCGAGTCACGGAGTTGCGAAGAAACCAAAATAGTGACCCATAACCCGATACCCCAAAAGA
CATAACTCCATAACACTACTGCTATTTTTAGCCCCTCAATCAAAGTTTCCATGGTGCTGTGTAAC
TTACTATTTTCCTTGCCCCCCGGAGGGACAAGCGGCTTCGCACCTTGGCTTTATTCTATCTATAG
TTACCAAAATGATATGAGTAAATACGTTATAAAAGAAGTAATACTTCGTCAAGGAAGAGCCATGA
AAAGCCGGGGAGAGAAGTACCAGGTGAGGGAGCGTGTGAAGGTGAGGCGTAGCATATTTCAAGTT
AGGCGTAACGTATTGAAAGCTAGGCTACACATAGGTATATTGAAA
Found at i:803573 original size:88 final size:88
Alignment explanation
Indices: 803424--803622 Score: 380
Period size: 88 Copynumber: 2.3 Consensus size: 88
803414 GGGGCGGAGC
**
803424 CACTCACTATTCCGATGGTGAGGGTGCGTAAGCACACTCGACTGCCTTTGGTTACTTATTTGAGA
1 CACTCACTATTCATATGGTGAGGGTGCGTAAGCACACTCGACTGCCTTTGGTTACTTATTTGAGA
803489 GGAGGGGAGAGGGTGCGTTAGCA
66 GGAGGGGAGAGGGTGCGTTAGCA
803512 CACTCACTATTCATATGGTGAGGGTGCGTAAGCACACTCGACTGCCTTTGGTTACTTATTTGAGA
1 CACTCACTATTCATATGGTGAGGGTGCGTAAGCACACTCGACTGCCTTTGGTTACTTATTTGAGA
803577 GGAGGGGAGAGGGTGCGTTAGCA
66 GGAGGGGAGAGGGTGCGTTAGCA
803600 CACTCACTATTCATATGGTGAGG
1 CACTCACTATTCATATGGTGAGG
803623 ACCGGTAGGG
Statistics
Matches: 109, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
88 109 1.00
ACGTcount: A:0.23, C:0.19, G:0.31, T:0.27
Consensus pattern (88 bp):
CACTCACTATTCATATGGTGAGGGTGCGTAAGCACACTCGACTGCCTTTGGTTACTTATTTGAGA
GGAGGGGAGAGGGTGCGTTAGCA
Left flanking sequence: Indices 802924 -- 803423
TGGGGTGCGGCGAATAACGGGATTCGAACCCGTGTTTTCGAATTCACAATCTGACACTCTGACCT
ATTGGGTTATACTCGCCCTTAGACACGTCTATACTCGCTATCGGATCCGGACCGATACCCCATAT
TTTGTCATCGCTCTATTGCGGTGCGTTCGGAGAATGCTGAATGGATAGGAAATGCGACCGCATGA
TGGAGAATGTGGATGCATCTATTTCTCCCAGTTGGATTGAGATCTGTCTGTGGATGCCTTATATA
TGTTGCATTAGAGATGGCAAAACGATGCATGATGAAGCAAACATGCATGATGGAGATGCATGCAT
TATCTACCAAACATCATGATGCGCATTATACTATGACTTATGTTTAGAAGTGTACACCAGGGTGC
GTTAGCACACTCGACTGCCCTTGCCCCCGGAGGGACAAGCGGCTTCGCACCTTAGTTACTTATTT
GAGAGGGGGGCCGCCATCGCCCCTACTACTTTATAGGGGCGGAGC
Right flanking sequence: Indices 803623 -- 804122
ACCGGTAGGGGCTCGACTGTCAAGGACCCTTTAGGGTGCGTAAGCACGCTCGACTAATAAGGACC
CTTTAGGGGGCTCGACTGATAAGGAGAGGAGAGGGGGCTCGACTGATAAGGAGAGGAGAGGGGTC
ACTCACTATTCATATGGTGAGGGTCTTTAGACACTCTTTATTATATCTCTAGTTACCACCGATCT
ATCTATTTTCCTTGCACTAGGAAGCGCAAGCCCCTCCGGGACCTTGCCCCCCGGCCCCTCCTTTT
TCTCCTCTGGCGGCTTCGCACCTTGAATGAATTACCAGCTGGGCCCTACTACTTTATAGGGGTCA
CTCACTATTCATATGGTGAGGGATTGTCATTCTCATTCTTGATTCTATCTATCTCTAGTTACCGA
AAAGAAAGAAATAGAGATTACTTCATAAGGTAAGGCCGGCGAAAGGCGAGACCACCTTGGTAAAA
TGGGTGCCCACACCTGGCTTTTTCAGGACTTTCCTGGCTGGATCT
Found at i:803709 original size:27 final size:27
Alignment explanation
Indices: 803692--803750 Score: 82
Period size: 27 Copynumber: 2.2 Consensus size: 27
803682 AGGACCCTTT
* *
803692 AGGGGGCTCGACTGATAAGGAGAGGAG
1 AGGGGGCTCGACTGATAAGGACACGAG
* *
803719 AGGGGGCTCGACTGATAAGGAGAGGAG
1 AGGGGGCTCGACTGATAAGGACACGAG
803746 AGGGG
1 AGGGG
803751 TCACTCACTA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.29, C:0.10, G:0.51, T:0.10
Consensus pattern (27 bp):
AGGGGGCTCGACTGATAAGGACACGAG
Left flanking sequence: Indices 803192 -- 803691
TAGAGATGGCAAAACGATGCATGATGAAGCAAACATGCATGATGGAGATGCATGCATTATCTACC
AAACATCATGATGCGCATTATACTATGACTTATGTTTAGAAGTGTACACCAGGGTGCGTTAGCAC
ACTCGACTGCCCTTGCCCCCGGAGGGACAAGCGGCTTCGCACCTTAGTTACTTATTTGAGAGGGG
GGCCGCCATCGCCCCTACTACTTTATAGGGGCGGAGCCACTCACTATTCCGATGGTGAGGGTGCG
TAAGCACACTCGACTGCCTTTGGTTACTTATTTGAGAGGAGGGGAGAGGGTGCGTTAGCACACTC
ACTATTCATATGGTGAGGGTGCGTAAGCACACTCGACTGCCTTTGGTTACTTATTTGAGAGGAGG
GGAGAGGGTGCGTTAGCACACTCACTATTCATATGGTGAGGACCGGTAGGGGCTCGACTGTCAAG
GACCCTTTAGGGTGCGTAAGCACGCTCGACTAATAAGGACCCTTT
Right flanking sequence: Indices 803751 -- 804250
TCACTCACTATTCATATGGTGAGGGTCTTTAGACACTCTTTATTATATCTCTAGTTACCACCGAT
CTATCTATTTTCCTTGCACTAGGAAGCGCAAGCCCCTCCGGGACCTTGCCCCCCGGCCCCTCCTT
TTTCTCCTCTGGCGGCTTCGCACCTTGAATGAATTACCAGCTGGGCCCTACTACTTTATAGGGGT
CACTCACTATTCATATGGTGAGGGATTGTCATTCTCATTCTTGATTCTATCTATCTCTAGTTACC
GAAAAGAAAGAAATAGAGATTACTTCATAAGGTAAGGCCGGCGAAAGGCGAGACCACCTTGGTAA
AATGGGTGCCCACACCTGGCTTTTTCAGGACTTTCCTGGCTGGATCTATCCACCTGTCCAAGTTA
GTGCCGTAACAAGCTAACTCACCCACCCATTGTAGAATAAAGGCTACCGGCATTAGTTCGCGCAA
GCAAGCCATAAGGCAGGCCGGATGGTAGGGCGTACCACTTCATCC
Found at i:810472 original size:11 final size:11
Alignment explanation
Indices: 810456--810480 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
810446 TTGGCTCGGG
810456 CATTTCTGATC
1 CATTTCTGATC
810467 CATTTCTGATC
1 CATTTCTGATC
810478 CAT
1 CAT
810481 ATCTTCTCCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.20, C:0.28, G:0.08, T:0.44
Consensus pattern (11 bp):
CATTTCTGATC
Left flanking sequence: Indices 809956 -- 810455
ACCCAATACATTCCCTTATGTAAAGCAAGCAGATGAGAACAACCCATTACCTGTGTAAACATAGT
GCTTATTAGAACTCCATATTCAAATGGTTATGATTACTTGTCCTATCTATTAAGGTCAAGGTGAC
TTAGGGTTCTACTGAGCTTATAGAGTTAGATACAATGAAACCTATACATGACTATAACATCGGTA
ATATCAGTGAACGTTGTATAAACATAATGTACAGTATGACTCTTGCTTATAACGTTTCAACATTG
ACTATGATTACCCTTATTCTAGTACAGTAAGACCTGCTTTGTTCATCTCTATTTACCAGTATGTT
AGCTCATACCTTACTTCAAGCTATACCCCAGGAATATAGAACACATCATAATTAGGGAAACAGTG
TAGTATCCAGCTGAATGGTAATGCTTGGTTATTCATTACAGCGGATGACTGGGCATATCTATGTA
TATATAGATGGGTAATATTGGTGCTTATTCCCCCGTTGGCTCGGG
Right flanking sequence: Indices 810481 -- 810980
ATCTTCTCCCGATGGCTGGGTCATTCTCCATTATAAGAGAAAGATGTCTTATCAATCGGCTGGTT
TGTCTCGGTGGGTTAGTCTAATCCATCTTTTCCTTTTCGATCACCTTTCCAATTATCCATCTTTG
AAAGGGAAAAACTCATATATAATATACGAGTCGATCACCAAGGCTTCGCATATAATGAAAATCTA
TCCATCTAGCTTTGACAACTAGCTAAAAAAAAAGAATATCTGACCCGATCACAAATTGTTTTTAT
TGGACAAACATGGCGAATCGAGTGAAAGCCTATTGAACTGGACTAGCTTCAGTGCATTAAGCTGC
ATGGACTGCCTATGAACTGTAGAGAGTGAAAGAGAGAGTGAAGGCCATACAGTAAATCCTACTAG
AGAGAATCTAGCTTCAGTCTTAGTAACTTGCCCTAAGGTATTAGAGAGAGACTGCCTTAATTAAG
GTCTTGCTTACGGTAATAGCTCTACGGTACGGTAAATAGACTTAA
Found at i:813736 original size:24 final size:24
Alignment explanation
Indices: 813681--813756 Score: 125
Period size: 24 Copynumber: 3.1 Consensus size: 24
813671 AGGAGAGGAG
*
813681 AGGACCTTTAGGTGCTCGACTGTTA
1 AGGACCTTTAGGTGCTCGAC-CTTA
*
813706 AGGACCTTTAGGTGCTCGACCATA
1 AGGACCTTTAGGTGCTCGACCTTA
813730 AGGACCTTTAGGTGCTCGACCTTA
1 AGGACCTTTAGGTGCTCGACCTTA
813754 AGG
1 AGG
813757 GAGAGGGAGA
Statistics
Matches: 48, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
24 28 0.58
25 20 0.42
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (24 bp):
AGGACCTTTAGGTGCTCGACCTTA
Left flanking sequence: Indices 813181 -- 813680
CATTACACCATGAATTGGAAGGAAGGGGGAAGCCGTAACGGGAATTGAAAATAGAACACCAGGGA
CATAGAGATCCAAGGCTAGCAGCAGTTTCTTATTCTATTGATTTAGATCCTTAACGGAAAGGCTA
TGCATAGAAGCCGCTTAGTCAAGAGGGAAGCCATTGAACAGAAGGCGTGGTCATTAATGAGCGGG
TAATGGAGAATGGGCTGGCAGTGACAGGAAGCTTGAGAAGGACGGCCGATCGGATGTTTTCGGAC
TTGAACGGAAAGGCTGTAGATTAAGGATGCATTAGCAGGCTCGACCCTAAGGCCCGTTAGGGTGA
GGGTGAGCTTGCCGAACTCTCGACAACGGAGAGGTAACGTGTGAGGTCCGTCAGGGGCTCGACTG
ATAAGGATGCGTAAGCAGGCTCGACTGATAAGGACCCTCACCATATGAATAGTGAGTGACCCCTA
AAGAATATAGGGCCCTTTAGGGGGCTCGACTGATAAGGAGAGGAG
Right flanking sequence: Indices 813757 -- 814256
GAGAGGGAGAGGAGAGGAGAGGAGACGAACAACTCTCTTTTGGGGCCCCTCACCAAATAAGCACC
CCATACGCCCCAAAAGAGAGGTCCGTCAGGGTGCGTAGCACGCTCGACTAATAAGGAGAGGGGCT
CGACTGGTAAGGAGAGGAACTTGAAGAACAACAGGCCGCCATCGATATGCTCTCGAATTTATTGA
TGATGCATTACTTATGATGCACCTGTTTTGGGTCATACGCCTCATTAAAAAACACCTGTGCTGCC
TATGCCAGGACTCTTTCCCGCTACTCGATCCAGGGAGGTGTAGAGCCACTAGATGCCGGTACTAC
CTACATTTCAAGTGGAAATGACAGGTTTCAATCACTCAATGCCAAGAGTCGATCACTCGATGACA
GGTTTCGATACACTCAATGCCAGGATTCTTTTCCACTAGTCGAGCCAAGAGGCGATCACTCGATG
ACAGGTGGTGATCCCAGGAGGAAATGCCAGTCATAGATGGGCTGG
Found at i:813889 original size:21 final size:21
Alignment explanation
Indices: 813863--813903 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
813853 TGCGTAGCAC
813863 GCTCGACTAATAAGGAGAGGG
1 GCTCGACTAATAAGGAGAGGG
**
813884 GCTCGACTGGTAAGGAGAGG
1 GCTCGACTAATAAGGAGAGG
813904 AACTTGAAGA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.15, G:0.41, T:0.15
Consensus pattern (21 bp):
GCTCGACTAATAAGGAGAGGG
Left flanking sequence: Indices 813363 -- 813862
ATTAATGAGCGGGTAATGGAGAATGGGCTGGCAGTGACAGGAAGCTTGAGAAGGACGGCCGATCG
GATGTTTTCGGACTTGAACGGAAAGGCTGTAGATTAAGGATGCATTAGCAGGCTCGACCCTAAGG
CCCGTTAGGGTGAGGGTGAGCTTGCCGAACTCTCGACAACGGAGAGGTAACGTGTGAGGTCCGTC
AGGGGCTCGACTGATAAGGATGCGTAAGCAGGCTCGACTGATAAGGACCCTCACCATATGAATAG
TGAGTGACCCCTAAAGAATATAGGGCCCTTTAGGGGGCTCGACTGATAAGGAGAGGAGAGGACCT
TTAGGTGCTCGACTGTTAAGGACCTTTAGGTGCTCGACCATAAGGACCTTTAGGTGCTCGACCTT
AAGGGAGAGGGAGAGGAGAGGAGAGGAGACGAACAACTCTCTTTTGGGGCCCCTCACCAAATAAG
CACCCCATACGCCCCAAAAGAGAGGTCCGTCAGGGTGCGTAGCAC
Right flanking sequence: Indices 813904 -- 814403
AACTTGAAGAACAACAGGCCGCCATCGATATGCTCTCGAATTTATTGATGATGCATTACTTATGA
TGCACCTGTTTTGGGTCATACGCCTCATTAAAAAACACCTGTGCTGCCTATGCCAGGACTCTTTC
CCGCTACTCGATCCAGGGAGGTGTAGAGCCACTAGATGCCGGTACTACCTACATTTCAAGTGGAA
ATGACAGGTTTCAATCACTCAATGCCAAGAGTCGATCACTCGATGACAGGTTTCGATACACTCAA
TGCCAGGATTCTTTTCCACTAGTCGAGCCAAGAGGCGATCACTCGATGACAGGTGGTGATCCCAG
GAGGAAATGCCAGTCATAGATGGGCTGGGATACTCGGCTGCTTGGCTTTTGGCTGCTTGGCTAAT
CGACTTGGCTTGGATACCGGGATCGGTTTATCAGTTGGGATATTCAGTTGGAAACATGAGCTGCT
TGGCTGGGATATTTCACTGTGGCTGCTGCACTACTCGACTTGGCT
Found at i:814136 original size:21 final size:21
Alignment explanation
Indices: 814112--814168 Score: 60
Period size: 21 Copynumber: 2.7 Consensus size: 21
814102 ACAGGTTTCA
814112 ATCACTCAATGCCAAGAGTCG
1 ATCACTCAATGCCAAGAGTCG
* * * **
814133 ATCACTCGATGACAGGTTTCG
1 ATCACTCAATGCCAAGAGTCG
814154 ATACACTCAATGCCA
1 AT-CACTCAATGCCA
814169 GGATTCTTTT
Statistics
Matches: 28, Mismatches: 7, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
21 18 0.64
22 10 0.36
ACGTcount: A:0.32, C:0.28, G:0.18, T:0.23
Consensus pattern (21 bp):
ATCACTCAATGCCAAGAGTCG
Left flanking sequence: Indices 813612 -- 814111
CATATGAATAGTGAGTGACCCCTAAAGAATATAGGGCCCTTTAGGGGGCTCGACTGATAAGGAGA
GGAGAGGACCTTTAGGTGCTCGACTGTTAAGGACCTTTAGGTGCTCGACCATAAGGACCTTTAGG
TGCTCGACCTTAAGGGAGAGGGAGAGGAGAGGAGAGGAGACGAACAACTCTCTTTTGGGGCCCCT
CACCAAATAAGCACCCCATACGCCCCAAAAGAGAGGTCCGTCAGGGTGCGTAGCACGCTCGACTA
ATAAGGAGAGGGGCTCGACTGGTAAGGAGAGGAACTTGAAGAACAACAGGCCGCCATCGATATGC
TCTCGAATTTATTGATGATGCATTACTTATGATGCACCTGTTTTGGGTCATACGCCTCATTAAAA
AACACCTGTGCTGCCTATGCCAGGACTCTTTCCCGCTACTCGATCCAGGGAGGTGTAGAGCCACT
AGATGCCGGTACTACCTACATTTCAAGTGGAAATGACAGGTTTCA
Right flanking sequence: Indices 814169 -- 814668
GGATTCTTTTCCACTAGTCGAGCCAAGAGGCGATCACTCGATGACAGGTGGTGATCCCAGGAGGA
AATGCCAGTCATAGATGGGCTGGGATACTCGGCTGCTTGGCTTTTGGCTGCTTGGCTAATCGACT
TGGCTTGGATACCGGGATCGGTTTATCAGTTGGGATATTCAGTTGGAAACATGAGCTGCTTGGCT
GGGATATTTCACTGTGGCTGCTGCACTACTCGACTTGGCTAATCTACCGTGGCTGCTACGCTATT
CGAATGGACTATCAGCGCTCCCGGGCTGGATACGGTTAGTGCCTAGAAGCTCTTTTCAGTCAGTG
CTTGAAAGAAGTTCTACTCTTGGGAAGGTCTATTCGTGAAGGCTCTACTCTCGGGAAGGTCTACC
CAGTGCATGAATGAAGCTCTAGTCACAGTGCGGCTAGAACTCTTGTATGTCAGTGCATGAATGTA
GCTATACTCTCTTTGAATCTCTACTCTTTGGATGCTATACTCAGT
Found at i:814525 original size:16 final size:16
Alignment explanation
Indices: 814501--814557 Score: 64
Period size: 16 Copynumber: 3.6 Consensus size: 16
814491 GTGCTTGAAA
* *
814501 GAAGTTCTACTCTTGG
1 GAAGGTCTACTCTCGG
*
814517 GAAGGTCTA-T-TCGT
1 GAAGGTCTACTCTCGG
814531 GAAGGCTCTACTCTCGG
1 GAAGG-TCTACTCTCGG
814548 GAAGGTCTAC
1 GAAGGTCTAC
814558 CCAGTGCATG
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
14 7 0.21
15 5 0.15
16 14 0.41
17 8 0.24
ACGTcount: A:0.21, C:0.21, G:0.28, T:0.30
Consensus pattern (16 bp):
GAAGGTCTACTCTCGG
Left flanking sequence: Indices 814001 -- 814500
AAACACCTGTGCTGCCTATGCCAGGACTCTTTCCCGCTACTCGATCCAGGGAGGTGTAGAGCCAC
TAGATGCCGGTACTACCTACATTTCAAGTGGAAATGACAGGTTTCAATCACTCAATGCCAAGAGT
CGATCACTCGATGACAGGTTTCGATACACTCAATGCCAGGATTCTTTTCCACTAGTCGAGCCAAG
AGGCGATCACTCGATGACAGGTGGTGATCCCAGGAGGAAATGCCAGTCATAGATGGGCTGGGATA
CTCGGCTGCTTGGCTTTTGGCTGCTTGGCTAATCGACTTGGCTTGGATACCGGGATCGGTTTATC
AGTTGGGATATTCAGTTGGAAACATGAGCTGCTTGGCTGGGATATTTCACTGTGGCTGCTGCACT
ACTCGACTTGGCTAATCTACCGTGGCTGCTACGCTATTCGAATGGACTATCAGCGCTCCCGGGCT
GGATACGGTTAGTGCCTAGAAGCTCTTTTCAGTCAGTGCTTGAAA
Right flanking sequence: Indices 814558 -- 815057
CCAGTGCATGAATGAAGCTCTAGTCACAGTGCGGCTAGAACTCTTGTATGTCAGTGCATGAATGT
AGCTATACTCTCTTTGAATCTCTACTCTTTGGATGCTATACTCAGTGCATTAAGCTCTAGTTCGT
GCCCAATAAGTCGTTCCCACCTGTTGTACGTGATCAGTTTTCAATCCCCCATGCCCAGTTAGTGG
TACGTGACAAGTAGTCATCCGCTATTAGATGCCAAGAGTCATAGTCGCCAGTAGGGTTGTCAATG
CCGATAGTAAAAGGAGTCGATCCGCTAGTCGATGCCAGAAGGTAGGTCAGCCTAAAGCCAGTGGT
ACACGATAGCCAGGAGGTTGCGCCAGGAGGTCGACGATACCCAGTCTCATTGATAGGAAGGTGGT
CGCCGATAGACAGTGGTGTCCCGATAATGAGGTGTCGCCCAGAGCCAGTCGACAGGAGGTCATTT
TTGATAGCCGCTAGTCGATCCAAGAGTCGATGCCAGGGGGCGATC
Found at i:816726 original size:6 final size:6
Alignment explanation
Indices: 816717--816743 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
816707 CTGTATCTTG
816717 ATCCTT ATCCTT ATCCTT ATCCTT ATC
1 ATCCTT ATCCTT ATCCTT ATCCTT ATC
816744 AGTATCTGTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.19, C:0.33, G:0.00, T:0.48
Consensus pattern (6 bp):
ATCCTT
Left flanking sequence: Indices 816217 -- 816716
AAGGTTCTCCCTTCTCTAGTTCAGGTAAGGTAAATCCTTCGGCAAGGCTGCTTGCTATTATATAC
GTAATTACGTACTACGAGATCGCTGAGCTATTCCGATACAAGAAAAAATCCGATACAAGTTGTTA
AGGTAAATCCTTCCTTCTGACATGCATCTATATATATGATATTATGCCATTTTTACAGATCTATT
TTGTGAATTTATTCCCCTCAAATCGCTAGCTCTCAATCCTTCTTCAATGCCAATATTATATATGT
AATTATGCTATTTTGAGAGATCGAATTGTGAACTTCTTCCAGCCAGTTATGAATTCTATTTGTAA
TTATGCGATTTCGAGATATCCTTTCTAACGCATGTGTGGGCGTGCACGTGTATATAGTATCAATC
ATCATCAGTGTGTTAGCAGTAGCAGTAGGAGTCTTAGGAGTATGAGTATGAGCAGTAGGAGTAAT
AGAGTCTCGGTATTAGGAGTATCTTGATCCAGTATCTGTATCTTG
Right flanking sequence: Indices 816744 -- 817243
AGTATCTGTATCTTGATCTGTATCTTTATTAAGATGAGGTTGTAATGGAGATGAGGTTGGTATGA
AGAATAGGTAGTTAGGAGGATATGGTCTGAATGAATATATGGTAGGTATATGCTGAGGTAGGTCT
GATTAGAAGGTTGGAAGTAATGATGCTGAGTTGGGTCTGATGATGAGATGGTGAGATGGTAGGAA
GTACTACATGGTGGTAATGACTACATGGTAGGTGTTAATGAGGATGAGGTAGGTAGATAGAGAGA
AAGATGTAGCTGGGTCTAGAGATAGACGTTATGATGGGATGCTGGTATGCTAGTATGCTGGGATG
TGGGGATGGATGCTGATGGTCTGATGCTGGTCTGCTGGTCTGCTGTGATGAGCTGATGCTGGGCT
GTATGCTGGGCTGTATGAAGTTAGTGGATGTAGTGGATGTAGAGGAGATAGGAGAGCTAGGAGTG
TTATAGCTGTGTATAGCTAGATAGAAGTTATGATGGTTCTATAGT
Found at i:816731 original size:18 final size:19
Alignment explanation
Indices: 816690--816743 Score: 60
Period size: 19 Copynumber: 2.9 Consensus size: 19
816680 GGTATTAGGA
*
816690 GTATCTTGATCCAGTAT-CT
1 GTATCTTGATCC-TTATCCT
816709 GTATCTTGATCCTTATCCT
1 GTATCTTGATCCTTATCCT
816728 -TATCCTT-ATCCTTATC
1 GTAT-CTTGATCCTTATC
816744 AGTATCTGTA
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
18 15 0.47
19 17 0.53
ACGTcount: A:0.19, C:0.26, G:0.09, T:0.46
Consensus pattern (19 bp):
GTATCTTGATCCTTATCCT
Left flanking sequence: Indices 816190 -- 816689
GATCTTTCTGATCGCTAGCTAGAAGGTAAGGTTCTCCCTTCTCTAGTTCAGGTAAGGTAAATCCT
TCGGCAAGGCTGCTTGCTATTATATACGTAATTACGTACTACGAGATCGCTGAGCTATTCCGATA
CAAGAAAAAATCCGATACAAGTTGTTAAGGTAAATCCTTCCTTCTGACATGCATCTATATATATG
ATATTATGCCATTTTTACAGATCTATTTTGTGAATTTATTCCCCTCAAATCGCTAGCTCTCAATC
CTTCTTCAATGCCAATATTATATATGTAATTATGCTATTTTGAGAGATCGAATTGTGAACTTCTT
CCAGCCAGTTATGAATTCTATTTGTAATTATGCGATTTCGAGATATCCTTTCTAACGCATGTGTG
GGCGTGCACGTGTATATAGTATCAATCATCATCAGTGTGTTAGCAGTAGCAGTAGGAGTCTTAGG
AGTATGAGTATGAGCAGTAGGAGTAATAGAGTCTCGGTATTAGGA
Right flanking sequence: Indices 816744 -- 817243
AGTATCTGTATCTTGATCTGTATCTTTATTAAGATGAGGTTGTAATGGAGATGAGGTTGGTATGA
AGAATAGGTAGTTAGGAGGATATGGTCTGAATGAATATATGGTAGGTATATGCTGAGGTAGGTCT
GATTAGAAGGTTGGAAGTAATGATGCTGAGTTGGGTCTGATGATGAGATGGTGAGATGGTAGGAA
GTACTACATGGTGGTAATGACTACATGGTAGGTGTTAATGAGGATGAGGTAGGTAGATAGAGAGA
AAGATGTAGCTGGGTCTAGAGATAGACGTTATGATGGGATGCTGGTATGCTAGTATGCTGGGATG
TGGGGATGGATGCTGATGGTCTGATGCTGGTCTGCTGGTCTGCTGTGATGAGCTGATGCTGGGCT
GTATGCTGGGCTGTATGAAGTTAGTGGATGTAGTGGATGTAGAGGAGATAGGAGAGCTAGGAGTG
TTATAGCTGTGTATAGCTAGATAGAAGTTATGATGGTTCTATAGT
Found at i:816755 original size:18 final size:17
Alignment explanation
Indices: 816690--816769 Score: 65
Period size: 18 Copynumber: 4.4 Consensus size: 17
816680 GGTATTAGGA
*
816690 GTATCTTGATCCAGTATCT
1 GTATCTT-ATCC-TTATCT
816709 GTATCTTGATCCTTATCCT
1 GTATCTT-ATCCTTAT-CT
*
816728 -TATCCTTATCCTTATCA
1 GTAT-CTTATCCTTATCT
816745 GTATCTGTAT-CTTGATCT
1 GTATCT-TATCCTT-ATCT
816763 GTATCTT
1 GTATCTT
816770 TATTAAGATG
Statistics
Matches: 53, Mismatches: 3, Indels: 12
0.78 0.04 0.18
Matches are distributed among these distances:
17 7 0.13
18 29 0.55
19 17 0.32
ACGTcount: A:0.19, C:0.23, G:0.11, T:0.47
Consensus pattern (17 bp):
GTATCTTATCCTTATCT
Left flanking sequence: Indices 816190 -- 816689
GATCTTTCTGATCGCTAGCTAGAAGGTAAGGTTCTCCCTTCTCTAGTTCAGGTAAGGTAAATCCT
TCGGCAAGGCTGCTTGCTATTATATACGTAATTACGTACTACGAGATCGCTGAGCTATTCCGATA
CAAGAAAAAATCCGATACAAGTTGTTAAGGTAAATCCTTCCTTCTGACATGCATCTATATATATG
ATATTATGCCATTTTTACAGATCTATTTTGTGAATTTATTCCCCTCAAATCGCTAGCTCTCAATC
CTTCTTCAATGCCAATATTATATATGTAATTATGCTATTTTGAGAGATCGAATTGTGAACTTCTT
CCAGCCAGTTATGAATTCTATTTGTAATTATGCGATTTCGAGATATCCTTTCTAACGCATGTGTG
GGCGTGCACGTGTATATAGTATCAATCATCATCAGTGTGTTAGCAGTAGCAGTAGGAGTCTTAGG
AGTATGAGTATGAGCAGTAGGAGTAATAGAGTCTCGGTATTAGGA
Right flanking sequence: Indices 816770 -- 817269
TATTAAGATGAGGTTGTAATGGAGATGAGGTTGGTATGAAGAATAGGTAGTTAGGAGGATATGGT
CTGAATGAATATATGGTAGGTATATGCTGAGGTAGGTCTGATTAGAAGGTTGGAAGTAATGATGC
TGAGTTGGGTCTGATGATGAGATGGTGAGATGGTAGGAAGTACTACATGGTGGTAATGACTACAT
GGTAGGTGTTAATGAGGATGAGGTAGGTAGATAGAGAGAAAGATGTAGCTGGGTCTAGAGATAGA
CGTTATGATGGGATGCTGGTATGCTAGTATGCTGGGATGTGGGGATGGATGCTGATGGTCTGATG
CTGGTCTGCTGGTCTGCTGTGATGAGCTGATGCTGGGCTGTATGCTGGGCTGTATGAAGTTAGTG
GATGTAGTGGATGTAGAGGAGATAGGAGAGCTAGGAGTGTTATAGCTGTGTATAGCTAGATAGAA
GTTATGATGGTTCTATAGTGAGAGTAAGATGGGTATGAAGAAGAT
Found at i:817141 original size:12 final size:12
Alignment explanation
Indices: 817120--817150 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
817110 GCTGTGATGA
817120 GCTG-ATGCTGG
1 GCTGTATGCTGG
817131 GCTGTATGCTGG
1 GCTGTATGCTGG
817143 GCTGTATG
1 GCTGTATG
817151 AAGTTAGTGG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 4 0.21
12 15 0.79
ACGTcount: A:0.10, C:0.16, G:0.42, T:0.32
Consensus pattern (12 bp):
GCTGTATGCTGG
Left flanking sequence: Indices 816620 -- 817119
TAGCAGTAGCAGTAGGAGTCTTAGGAGTATGAGTATGAGCAGTAGGAGTAATAGAGTCTCGGTAT
TAGGAGTATCTTGATCCAGTATCTGTATCTTGATCCTTATCCTTATCCTTATCCTTATCAGTATC
TGTATCTTGATCTGTATCTTTATTAAGATGAGGTTGTAATGGAGATGAGGTTGGTATGAAGAATA
GGTAGTTAGGAGGATATGGTCTGAATGAATATATGGTAGGTATATGCTGAGGTAGGTCTGATTAG
AAGGTTGGAAGTAATGATGCTGAGTTGGGTCTGATGATGAGATGGTGAGATGGTAGGAAGTACTA
CATGGTGGTAATGACTACATGGTAGGTGTTAATGAGGATGAGGTAGGTAGATAGAGAGAAAGATG
TAGCTGGGTCTAGAGATAGACGTTATGATGGGATGCTGGTATGCTAGTATGCTGGGATGTGGGGA
TGGATGCTGATGGTCTGATGCTGGTCTGCTGGTCTGCTGTGATGA
Right flanking sequence: Indices 817151 -- 817650
AAGTTAGTGGATGTAGTGGATGTAGAGGAGATAGGAGAGCTAGGAGTGTTATAGCTGTGTATAGC
TAGATAGAAGTTATGATGGTTCTATAGTGAGAGTAAGATGGGTATGAAGAAGATGCATGGGGTTA
TAGGGATCTTGTATAGGCAGATGGGTAGTTTTAGTGATGCAGGTAGGTTAGGCATAAAGGTAGGT
GAGGTAGGCTAGTAATGATGAATAGCTAATTATTCCCTGGTAAGACCTATTGACTCCTCTATTTT
TCCCGGTTGTGGGTGGGAGTAAATAGTGCTGCAAAACCCCTTGCCCCCGGAGGGACAAGCGGCTT
CGCACCTTTATATTAATCAAATCGGGAATAAATAGTTATTTAAAGATAATAAATAGTTCTTCCTC
TCCCTCTCCCTCTCCTTAACAGTCGAGCACCTAAAGGTCCTTATGGTCGAGCACCTAAAGGTCCT
TATGGTCGAGCCCCTCCGGTCCTCAATTTCGTAACCTCAATTGAG
Found at i:817591 original size:24 final size:24
Alignment explanation
Indices: 817562--817616 Score: 110
Period size: 24 Copynumber: 2.3 Consensus size: 24
817552 CTCCTTAACA
817562 GTCGAGCACCTAAAGGTCCTTATG
1 GTCGAGCACCTAAAGGTCCTTATG
817586 GTCGAGCACCTAAAGGTCCTTATG
1 GTCGAGCACCTAAAGGTCCTTATG
817610 GTCGAGC
1 GTCGAGC
817617 CCCTCCGGTC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.24, C:0.25, G:0.27, T:0.24
Consensus pattern (24 bp):
GTCGAGCACCTAAAGGTCCTTATG
Left flanking sequence: Indices 817062 -- 817561
TGGGATGTGGGGATGGATGCTGATGGTCTGATGCTGGTCTGCTGGTCTGCTGTGATGAGCTGATG
CTGGGCTGTATGCTGGGCTGTATGAAGTTAGTGGATGTAGTGGATGTAGAGGAGATAGGAGAGCT
AGGAGTGTTATAGCTGTGTATAGCTAGATAGAAGTTATGATGGTTCTATAGTGAGAGTAAGATGG
GTATGAAGAAGATGCATGGGGTTATAGGGATCTTGTATAGGCAGATGGGTAGTTTTAGTGATGCA
GGTAGGTTAGGCATAAAGGTAGGTGAGGTAGGCTAGTAATGATGAATAGCTAATTATTCCCTGGT
AAGACCTATTGACTCCTCTATTTTTCCCGGTTGTGGGTGGGAGTAAATAGTGCTGCAAAACCCCT
TGCCCCCGGAGGGACAAGCGGCTTCGCACCTTTATATTAATCAAATCGGGAATAAATAGTTATTT
AAAGATAATAAATAGTTCTTCCTCTCCCTCTCCCTCTCCTTAACA
Right flanking sequence: Indices 817617 -- 818116
CCCTCCGGTCCTCAATTTCGTAACCTCAATTGAGCCCCTCTTCCTGATGGTGGTTTTCAAAATGG
AATAGATGCTTGTCCAGATGCTGACTCGGATTCCTTCCCTGCCCTTGCCTTAGCCGTCGTATACC
GGAACCAATCTATTATTGGTCGAAGATGAAAACTTATATAGCGGGCGGGAAAGTGGAGCAGGGTC
AATTTTCGGGGCGGTAAGATGGGTGGGAATAAATAGTACTTCGCTGCGCTCAGCTCAGCTGGGTC
ACTCCGCCAACCCCCCTATAATAAGTCTAAAAGGTTGGGATAATAGACATCCCAATTTTCGATCG
ATTGTCCGGCTAATGCCTACCGACTCACAAGACAACACTGGATGTATATTATGATAGCGACGGCC
TAACCGTATTGTATTACTACGTCTTCCCTCATGATCCGACGTGCAAATGTCTTGGGTGCGTAATG
ACCTCACTCTATGTCTCTATCAAAGTCATAAACACAGTCCCGCTC
Found at i:819575 original size:17 final size:19
Alignment explanation
Indices: 819553--819592 Score: 57
Period size: 17 Copynumber: 2.2 Consensus size: 19
819543 GGCAGGAAAT
819553 AGGTCGCC-ATAAAG-AGG
1 AGGTCGCCGATAAAGAAGG
*
819570 AGGTCGCCGATAAGGAAGG
1 AGGTCGCCGATAAAGAAGG
819589 AGGT
1 AGGT
819593 GGTCATTGAC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 8 0.40
18 5 0.25
19 7 0.35
ACGTcount: A:0.33, C:0.15, G:0.40, T:0.12
Consensus pattern (19 bp):
AGGTCGCCGATAAAGAAGG
Left flanking sequence: Indices 819053 -- 819552
ATATAGTGAGACAGATAGCTCCAGAGACGGGGGGCTTTGGAATGGGTTATTTGAGCCTAAAGGAT
TTAGCTAGCGTACAGTAAGTACTCGGAAGGTACACTTGACTGGACGGGGGACTGGGTGATTTGGA
ATGGTTAAAGAGGTTAAACCCAAATGGATATATCTCTACTAGGTGAACACGGATACTGGTGTACT
TTTCTTGTTGGAATTGGAAACAGCAACCATCCCATTCGTAGTCGGAATCAAGCCCAGGTGAAGTC
GTGCCAATCCCCACCCCTTGCGTTAGCAAGATGACCGGGAATATGTTTGGAGATTCGGATAAGGT
GGACAGGTATTTAGGAAAAAAGAAAGGTAAGGGGCGTAGCGGTAAGAAGGAAGGGGTTTGATAAA
GCTATCAATGCCATGCCATCCGGGGTCTATAGCTGTACCAACGCATTCATTCGGTAAGTGGTCTA
GGTAGAACGGGTCTAGTTATTCAGGTGGTCTCATTGGCAGGAAAT
Right flanking sequence: Indices 819593 -- 820092
GGTCATTGACAGAAGGTCTCTGATAGCTGGTACTCAATAGCCCGGTGTCAATCCAAGTGTTGATG
CTCTCGATGCTTAGCTTTCTTTCTACTTGAGATATAACGTACCCATGTTCTCTACCCTCAACCAC
CTCACTTACGCCTACGGAACACGAGGTTCATACATCGATTGGATTGTAGGGATGAATACACGATC
TTACTTACGATGCACCTGTCGAAGATAGATAGGATCATGCGACAGACAAGGGGGAGTCTCCCTCA
GTATGGGAAGGGAGGTAGATAATGCTTGATAGTTATTGAGTGATCTATACTGAAGGTCTTCCGAG
AGGAGCGCACAAAAGGATGGAGGCCAACATACAACTGCCATCTACAGGTGGGGTGGCTTGGGGTG
GGACTACGGACGGATCAATACAGAAGACCCAGTGTGTGAGTCAGGTGCACAGATACCAATTGGAG
TCTTACACAGATTATGATTAAGAAGATTGGCTAGACGGGGAGGGG
Found at i:820894 original size:13 final size:13
Alignment explanation
Indices: 820876--820904 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
820866 TTCAGAGCAG
820876 CATTGGCGGCATT
1 CATTGGCGGCATT
820889 CATTGGCGGCATT
1 CATTGGCGGCATT
820902 CAT
1 CAT
820905 AGGAGCATTC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.17, C:0.24, G:0.28, T:0.31
Consensus pattern (13 bp):
CATTGGCGGCATT
Left flanking sequence: Indices 820376 -- 820875
GCTAGATATAAATTGAATGTTCAAATGAGATATCTTTATAGACGATATTATGGTACGATCAATTA
TGAGAGCCTAAAGCGTAATTACGTAGATAATATCCAGAGATACTAAGTGACTTATTGGGTGGGGG
GAATATGCCTGGTTGGGATACTATGGCGGGTATGAGAAGGGCCCGAAATGAGAAGGGTCTGGAAT
TGGTTTGACTTTCCTGGTGTACACTTCGTGACATAAGTCATAGTAGATCGCATCATGCATGTTTG
CTTCATCATGCATCGATTTTGCCATCTCTCATCTGTTGGTAACTTGGGGTACTTTTCTGCTTGGC
CAATGACGGGGAACTGTTCTTCATCTGGTGCCAACTTGGACATCTCTCTTGTCTGTTGGAAACTT
GGGGGGACATTGATCCTCTCGGCCAGTGTGGGTGATGTGGGCCTTCTCACTCGGTTCTGTTGAAC
GGGGGACTTCTCTTTCGTTCGGTGGATCAACAGGATTCAGAGCAG
Right flanking sequence: Indices 820905 -- 821404
AGGAGCATTCGGAGGCCTGAGTTGATTGATCGAGTAAACCAATAAGCAGAGGCTGGAAGGAGCAT
TCATAGAAGCATTCATAGGCAGGCCTTCGTTAATTGATACGAAGATTCAGAGGATGGAGCATTCA
TAGGCTGGAGTTGATTGATTTCTAAATAATCCCTCACCATATGAATAGTGAGTGACCCCTCTCCT
CTCCTTATCAGTCGAGCCCCCTCTCCTCTCCTTATCAGTCGAGCCCCCTAAAGGGTCCTTATTAG
TCGAGCGTGCTTACGCACCCTAAAGGGTCCTTGACAGTCGAGCCCCTACCGGTCCTCACCATATG
AATAGTGAGTGGCTCCGCCCCTCTCCCCTCCTCTCAAATAAGTAACCAAAGGCAGTCGAGTGTGC
TTACGCACCCTCACCATCGGAATAGTGAGTGGCTCCGCCCCTAAAGAATATAGGGCCCTATGAAA
AAGTAGGGGCGATGGCGGCCCCCCTCTCAAATAAGTAACTAAGGT
Found at i:821127 original size:27 final size:27
Alignment explanation
Indices: 821090--821148 Score: 118
Period size: 27 Copynumber: 2.2 Consensus size: 27
821080 TAGTGAGTGA
821090 CCCCTCTCCTCTCCTTATCAGTCGAGC
1 CCCCTCTCCTCTCCTTATCAGTCGAGC
821117 CCCCTCTCCTCTCCTTATCAGTCGAGC
1 CCCCTCTCCTCTCCTTATCAGTCGAGC
821144 CCCCT
1 CCCCT
821149 AAAGGGTCCT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.10, C:0.51, G:0.10, T:0.29
Consensus pattern (27 bp):
CCCCTCTCCTCTCCTTATCAGTCGAGC
Left flanking sequence: Indices 820590 -- 821089
TACACTTCGTGACATAAGTCATAGTAGATCGCATCATGCATGTTTGCTTCATCATGCATCGATTT
TGCCATCTCTCATCTGTTGGTAACTTGGGGTACTTTTCTGCTTGGCCAATGACGGGGAACTGTTC
TTCATCTGGTGCCAACTTGGACATCTCTCTTGTCTGTTGGAAACTTGGGGGGACATTGATCCTCT
CGGCCAGTGTGGGTGATGTGGGCCTTCTCACTCGGTTCTGTTGAACGGGGGACTTCTCTTTCGTT
CGGTGGATCAACAGGATTCAGAGCAGCATTGGCGGCATTCATTGGCGGCATTCATAGGAGCATTC
GGAGGCCTGAGTTGATTGATCGAGTAAACCAATAAGCAGAGGCTGGAAGGAGCATTCATAGAAGC
ATTCATAGGCAGGCCTTCGTTAATTGATACGAAGATTCAGAGGATGGAGCATTCATAGGCTGGAG
TTGATTGATTTCTAAATAATCCCTCACCATATGAATAGTGAGTGA
Right flanking sequence: Indices 821149 -- 821648
AAAGGGTCCTTATTAGTCGAGCGTGCTTACGCACCCTAAAGGGTCCTTGACAGTCGAGCCCCTAC
CGGTCCTCACCATATGAATAGTGAGTGGCTCCGCCCCTCTCCCCTCCTCTCAAATAAGTAACCAA
AGGCAGTCGAGTGTGCTTACGCACCCTCACCATCGGAATAGTGAGTGGCTCCGCCCCTAAAGAAT
ATAGGGCCCTATGAAAAAGTAGGGGCGATGGCGGCCCCCCTCTCAAATAAGTAACTAAGGTGCGA
AGCCGCTTGTCCCTCCGGGGGCAAGGGCAGTCGAGTGTGCTAACGCACCCTCACCATATGAATAG
TGAGTGACCCCTCTCCTCTCCTTATCAGTCGAGCCCCCTCTCCTCTCCTTATCAGTCGAGCCCCC
TAAAGGGTCCGAATAGTGAGTGACCCCTCACCATATGAATAGTGAGTGGCTCCGCCCCTCTCCTC
TCCTTATCAGTCGAGCCCCCTCTCCTCTCCTTATCAGTCGAGCCC
Found at i:821158 original size:27 final size:27
Alignment explanation
Indices: 821100--821170 Score: 79
Period size: 27 Copynumber: 2.6 Consensus size: 27
821090 CCCCTCTCCT
*** *
821100 CTCCTTATCAGTCGAGCCCCCTCTCCT
1 CTCCTTATCAGTCGAGCCCCCTAAACG
*
821127 CTCCTTATCAGTCGAGCCCCCTAAAGG
1 CTCCTTATCAGTCGAGCCCCCTAAACG
* *
821154 GTCCTTATTAGTCGAGC
1 CTCCTTATCAGTCGAGC
821171 GTGCTTACGC
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 37 1.00
ACGTcount: A:0.17, C:0.38, G:0.17, T:0.28
Consensus pattern (27 bp):
CTCCTTATCAGTCGAGCCCCCTAAACG
Left flanking sequence: Indices 820600 -- 821099
GACATAAGTCATAGTAGATCGCATCATGCATGTTTGCTTCATCATGCATCGATTTTGCCATCTCT
CATCTGTTGGTAACTTGGGGTACTTTTCTGCTTGGCCAATGACGGGGAACTGTTCTTCATCTGGT
GCCAACTTGGACATCTCTCTTGTCTGTTGGAAACTTGGGGGGACATTGATCCTCTCGGCCAGTGT
GGGTGATGTGGGCCTTCTCACTCGGTTCTGTTGAACGGGGGACTTCTCTTTCGTTCGGTGGATCA
ACAGGATTCAGAGCAGCATTGGCGGCATTCATTGGCGGCATTCATAGGAGCATTCGGAGGCCTGA
GTTGATTGATCGAGTAAACCAATAAGCAGAGGCTGGAAGGAGCATTCATAGAAGCATTCATAGGC
AGGCCTTCGTTAATTGATACGAAGATTCAGAGGATGGAGCATTCATAGGCTGGAGTTGATTGATT
TCTAAATAATCCCTCACCATATGAATAGTGAGTGACCCCTCTCCT
Right flanking sequence: Indices 821171 -- 821670
GTGCTTACGCACCCTAAAGGGTCCTTGACAGTCGAGCCCCTACCGGTCCTCACCATATGAATAGT
GAGTGGCTCCGCCCCTCTCCCCTCCTCTCAAATAAGTAACCAAAGGCAGTCGAGTGTGCTTACGC
ACCCTCACCATCGGAATAGTGAGTGGCTCCGCCCCTAAAGAATATAGGGCCCTATGAAAAAGTAG
GGGCGATGGCGGCCCCCCTCTCAAATAAGTAACTAAGGTGCGAAGCCGCTTGTCCCTCCGGGGGC
AAGGGCAGTCGAGTGTGCTAACGCACCCTCACCATATGAATAGTGAGTGACCCCTCTCCTCTCCT
TATCAGTCGAGCCCCCTCTCCTCTCCTTATCAGTCGAGCCCCCTAAAGGGTCCGAATAGTGAGTG
ACCCCTCACCATATGAATAGTGAGTGGCTCCGCCCCTCTCCTCTCCTTATCAGTCGAGCCCCCTC
TCCTCTCCTTATCAGTCGAGCCCCCTAAAGGGTCCTTATTAGTCG
Found at i:821518 original size:27 final size:27
Alignment explanation
Indices: 821481--821539 Score: 118
Period size: 27 Copynumber: 2.2 Consensus size: 27
821471 TAGTGAGTGA
821481 CCCCTCTCCTCTCCTTATCAGTCGAGC
1 CCCCTCTCCTCTCCTTATCAGTCGAGC
821508 CCCCTCTCCTCTCCTTATCAGTCGAGC
1 CCCCTCTCCTCTCCTTATCAGTCGAGC
821535 CCCCT
1 CCCCT
821540 AAAGGGTCCG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.10, C:0.51, G:0.10, T:0.29
Consensus pattern (27 bp):
CCCCTCTCCTCTCCTTATCAGTCGAGC
Left flanking sequence: Indices 820981 -- 821480
TTCATAGGCAGGCCTTCGTTAATTGATACGAAGATTCAGAGGATGGAGCATTCATAGGCTGGAGT
TGATTGATTTCTAAATAATCCCTCACCATATGAATAGTGAGTGACCCCTCTCCTCTCCTTATCAG
TCGAGCCCCCTCTCCTCTCCTTATCAGTCGAGCCCCCTAAAGGGTCCTTATTAGTCGAGCGTGCT
TACGCACCCTAAAGGGTCCTTGACAGTCGAGCCCCTACCGGTCCTCACCATATGAATAGTGAGTG
GCTCCGCCCCTCTCCCCTCCTCTCAAATAAGTAACCAAAGGCAGTCGAGTGTGCTTACGCACCCT
CACCATCGGAATAGTGAGTGGCTCCGCCCCTAAAGAATATAGGGCCCTATGAAAAAGTAGGGGCG
ATGGCGGCCCCCCTCTCAAATAAGTAACTAAGGTGCGAAGCCGCTTGTCCCTCCGGGGGCAAGGG
CAGTCGAGTGTGCTAACGCACCCTCACCATATGAATAGTGAGTGA
Right flanking sequence: Indices 821540 -- 822039
AAAGGGTCCGAATAGTGAGTGACCCCTCACCATATGAATAGTGAGTGGCTCCGCCCCTCTCCTCT
CCTTATCAGTCGAGCCCCCTCTCCTCTCCTTATCAGTCGAGCCCCCTAAAGGGTCCTTATTAGTC
GAGCGTGCTTACGCACCCTAAAGGGTCCTTGACAGTCGAGCCCCTACCGGTCCTCACCATCGGAA
TAGTGAGTGGCTCCGCCCCTAAGAAGTAAGGGCCCTCTCCCCTCGGGGATTGGGGTGGGTGGGTA
AATAGTAGTCGAGCCTGCTTGCGCATCGTTGGTCGAGCCATGCTTCGCATCCTCTCCTCCAATAG
TGAGTGACCCCTCTCCTCTCCTTATCAGTCGAGCCCCCTCTCCTCTCCTTATCAGTCGAGCCCCC
TCTCCTCTCCTTATCAGTCGAGCCCCCTAAAGGGTCCTTATTAGTCGAGCGTGCTTACGCACCCT
AAAGGGTCCTTATTAGTCGAGCGTGCTTACGCACCCTAAAGGGTC
Found at i:821629 original size:27 final size:27
Alignment explanation
Indices: 821593--821651 Score: 118
Period size: 27 Copynumber: 2.2 Consensus size: 27
821583 AGTGGCTCCG
821593 CCCCTCTCCTCTCCTTATCAGTCGAGC
1 CCCCTCTCCTCTCCTTATCAGTCGAGC
821620 CCCCTCTCCTCTCCTTATCAGTCGAGC
1 CCCCTCTCCTCTCCTTATCAGTCGAGC
821647 CCCCT
1 CCCCT
821652 AAAGGGTCCT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.10, C:0.51, G:0.10, T:0.29
Consensus pattern (27 bp):
CCCCTCTCCTCTCCTTATCAGTCGAGC
Left flanking sequence: Indices 821093 -- 821592
CTCTCCTCTCCTTATCAGTCGAGCCCCCTCTCCTCTCCTTATCAGTCGAGCCCCCTAAAGGGTCC
TTATTAGTCGAGCGTGCTTACGCACCCTAAAGGGTCCTTGACAGTCGAGCCCCTACCGGTCCTCA
CCATATGAATAGTGAGTGGCTCCGCCCCTCTCCCCTCCTCTCAAATAAGTAACCAAAGGCAGTCG
AGTGTGCTTACGCACCCTCACCATCGGAATAGTGAGTGGCTCCGCCCCTAAAGAATATAGGGCCC
TATGAAAAAGTAGGGGCGATGGCGGCCCCCCTCTCAAATAAGTAACTAAGGTGCGAAGCCGCTTG
TCCCTCCGGGGGCAAGGGCAGTCGAGTGTGCTAACGCACCCTCACCATATGAATAGTGAGTGACC
CCTCTCCTCTCCTTATCAGTCGAGCCCCCTCTCCTCTCCTTATCAGTCGAGCCCCCTAAAGGGTC
CGAATAGTGAGTGACCCCTCACCATATGAATAGTGAGTGGCTCCG
Right flanking sequence: Indices 821652 -- 822151
AAAGGGTCCTTATTAGTCGAGCGTGCTTACGCACCCTAAAGGGTCCTTGACAGTCGAGCCCCTAC
CGGTCCTCACCATCGGAATAGTGAGTGGCTCCGCCCCTAAGAAGTAAGGGCCCTCTCCCCTCGGG
GATTGGGGTGGGTGGGTAAATAGTAGTCGAGCCTGCTTGCGCATCGTTGGTCGAGCCATGCTTCG
CATCCTCTCCTCCAATAGTGAGTGACCCCTCTCCTCTCCTTATCAGTCGAGCCCCCTCTCCTCTC
CTTATCAGTCGAGCCCCCTCTCCTCTCCTTATCAGTCGAGCCCCCTAAAGGGTCCTTATTAGTCG
AGCGTGCTTACGCACCCTAAAGGGTCCTTATTAGTCGAGCGTGCTTACGCACCCTAAAGGGTCCT
TGACAGTCGAGCCCCTACCGGTCCTCACCATATGAATAGTGAGTGGCTCCGCCCCTATGAAGAAG
TAAGGGCCCTCAAATGGCAGGTGAAAATCCATGCCCTGTCTCCGT
Found at i:821648 original size:112 final size:107
Alignment explanation
Indices: 821456--821660 Score: 356
Period size: 112 Copynumber: 1.9 Consensus size: 107
821446 TGCTAACGCA
821456 CCCTCACCATATGAATAGTGAGTGACCCCTCTCCTCTCCTTATCAGTCGAGCCCCCTCTCCTCTC
1 CCCTCACCATATGAATAGTGAGTGACCCCTCTCCTCTCCTTATCAGTCGAGCCCCCTCTCCTCTC
821521 CTTATCAGTCGAGCCCCCTAAAGGGTCCGAATAGTGAGTGAC
66 CTTATCAGTCGAGCCCCCTAAAGGGTCCGAATAGTGAGTGAC
*
821563 CCCTCACCATATGAATAGTGAGTGGCTCCGCCCCTCTCCTCTCCTTATCAGTCGAGCCCCCTCTC
1 CCCTCACCATATGAATAGTGAGT-G----ACCCCTCTCCTCTCCTTATCAGTCGAGCCCCCTCTC
821628 CTCTCCTTATCAGTCGAGCCCCCTAAAGGGTCC
61 CTCTCCTTATCAGTCGAGCCCCCTAAAGGGTCC
821661 TTATTAGTCG
Statistics
Matches: 92, Mismatches: 1, Indels: 5
0.94 0.01 0.05
Matches are distributed among these distances:
107 23 0.25
108 1 0.01
112 68 0.74
ACGTcount: A:0.19, C:0.39, G:0.17, T:0.25
Consensus pattern (107 bp):
CCCTCACCATATGAATAGTGAGTGACCCCTCTCCTCTCCTTATCAGTCGAGCCCCCTCTCCTCTC
CTTATCAGTCGAGCCCCCTAAAGGGTCCGAATAGTGAGTGAC
Left flanking sequence: Indices 820956 -- 821455
GCTGGAAGGAGCATTCATAGAAGCATTCATAGGCAGGCCTTCGTTAATTGATACGAAGATTCAGA
GGATGGAGCATTCATAGGCTGGAGTTGATTGATTTCTAAATAATCCCTCACCATATGAATAGTGA
GTGACCCCTCTCCTCTCCTTATCAGTCGAGCCCCCTCTCCTCTCCTTATCAGTCGAGCCCCCTAA
AGGGTCCTTATTAGTCGAGCGTGCTTACGCACCCTAAAGGGTCCTTGACAGTCGAGCCCCTACCG
GTCCTCACCATATGAATAGTGAGTGGCTCCGCCCCTCTCCCCTCCTCTCAAATAAGTAACCAAAG
GCAGTCGAGTGTGCTTACGCACCCTCACCATCGGAATAGTGAGTGGCTCCGCCCCTAAAGAATAT
AGGGCCCTATGAAAAAGTAGGGGCGATGGCGGCCCCCCTCTCAAATAAGTAACTAAGGTGCGAAG
CCGCTTGTCCCTCCGGGGGCAAGGGCAGTCGAGTGTGCTAACGCA
Right flanking sequence: Indices 821661 -- 822160
TTATTAGTCGAGCGTGCTTACGCACCCTAAAGGGTCCTTGACAGTCGAGCCCCTACCGGTCCTCA
CCATCGGAATAGTGAGTGGCTCCGCCCCTAAGAAGTAAGGGCCCTCTCCCCTCGGGGATTGGGGT
GGGTGGGTAAATAGTAGTCGAGCCTGCTTGCGCATCGTTGGTCGAGCCATGCTTCGCATCCTCTC
CTCCAATAGTGAGTGACCCCTCTCCTCTCCTTATCAGTCGAGCCCCCTCTCCTCTCCTTATCAGT
CGAGCCCCCTCTCCTCTCCTTATCAGTCGAGCCCCCTAAAGGGTCCTTATTAGTCGAGCGTGCTT
ACGCACCCTAAAGGGTCCTTATTAGTCGAGCGTGCTTACGCACCCTAAAGGGTCCTTGACAGTCG
AGCCCCTACCGGTCCTCACCATATGAATAGTGAGTGGCTCCGCCCCTATGAAGAAGTAAGGGCCC
TCAAATGGCAGGTGAAAATCCATGCCCTGTCTCCGTCTCTCTGCA
Found at i:821661 original size:27 final size:27
Alignment explanation
Indices: 821603--821673 Score: 79
Period size: 27 Copynumber: 2.6 Consensus size: 27
821593 CCCCTCTCCT
*** *
821603 CTCCTTATCAGTCGAGCCCCCTCTCCT
1 CTCCTTATCAGTCGAGCCCCCTAAACG
*
821630 CTCCTTATCAGTCGAGCCCCCTAAAGG
1 CTCCTTATCAGTCGAGCCCCCTAAACG
* *
821657 GTCCTTATTAGTCGAGC
1 CTCCTTATCAGTCGAGC
821674 GTGCTTACGC
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 37 1.00
ACGTcount: A:0.17, C:0.38, G:0.17, T:0.28
Consensus pattern (27 bp):
CTCCTTATCAGTCGAGCCCCCTAAACG
Left flanking sequence: Indices 821103 -- 821602
CTTATCAGTCGAGCCCCCTCTCCTCTCCTTATCAGTCGAGCCCCCTAAAGGGTCCTTATTAGTCG
AGCGTGCTTACGCACCCTAAAGGGTCCTTGACAGTCGAGCCCCTACCGGTCCTCACCATATGAAT
AGTGAGTGGCTCCGCCCCTCTCCCCTCCTCTCAAATAAGTAACCAAAGGCAGTCGAGTGTGCTTA
CGCACCCTCACCATCGGAATAGTGAGTGGCTCCGCCCCTAAAGAATATAGGGCCCTATGAAAAAG
TAGGGGCGATGGCGGCCCCCCTCTCAAATAAGTAACTAAGGTGCGAAGCCGCTTGTCCCTCCGGG
GGCAAGGGCAGTCGAGTGTGCTAACGCACCCTCACCATATGAATAGTGAGTGACCCCTCTCCTCT
CCTTATCAGTCGAGCCCCCTCTCCTCTCCTTATCAGTCGAGCCCCCTAAAGGGTCCGAATAGTGA
GTGACCCCTCACCATATGAATAGTGAGTGGCTCCGCCCCTCTCCT
Right flanking sequence: Indices 821674 -- 822173
GTGCTTACGCACCCTAAAGGGTCCTTGACAGTCGAGCCCCTACCGGTCCTCACCATCGGAATAGT
GAGTGGCTCCGCCCCTAAGAAGTAAGGGCCCTCTCCCCTCGGGGATTGGGGTGGGTGGGTAAATA
GTAGTCGAGCCTGCTTGCGCATCGTTGGTCGAGCCATGCTTCGCATCCTCTCCTCCAATAGTGAG
TGACCCCTCTCCTCTCCTTATCAGTCGAGCCCCCTCTCCTCTCCTTATCAGTCGAGCCCCCTCTC
CTCTCCTTATCAGTCGAGCCCCCTAAAGGGTCCTTATTAGTCGAGCGTGCTTACGCACCCTAAAG
GGTCCTTATTAGTCGAGCGTGCTTACGCACCCTAAAGGGTCCTTGACAGTCGAGCCCCTACCGGT
CCTCACCATATGAATAGTGAGTGGCTCCGCCCCTATGAAGAAGTAAGGGCCCTCAAATGGCAGGT
GAAAATCCATGCCCTGTCTCCGTCTCTCTGCATTGAATCCGTTGG
Found at i:821968 original size:54 final size:54
Alignment explanation
Indices: 821872--821979 Score: 153
Period size: 54 Copynumber: 2.0 Consensus size: 54
821862 TAGTGAGTGA
*** *
821872 CCCCTCTCCTCTCCTTATCAGTCGAGCCCCCTCTCCTCTCCTTATCAGTCGAGC
1 CCCCTCTCCTCTCCTTATCAGTCGAGCCCCCTAAACGCTCCTTATCAGTCGAGC
* * *
821926 CCCCTCTCCTCTCCTTATCAGTCGAGCCCCCTAAAGGGTCCTTATTAGTCGAGC
1 CCCCTCTCCTCTCCTTATCAGTCGAGCCCCCTAAACGCTCCTTATCAGTCGAGC
821980 GTGCTTACGC
Statistics
Matches: 47, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
54 47 1.00
ACGTcount: A:0.14, C:0.44, G:0.14, T:0.29
Consensus pattern (54 bp):
CCCCTCTCCTCTCCTTATCAGTCGAGCCCCCTAAACGCTCCTTATCAGTCGAGC
Left flanking sequence: Indices 821372 -- 821871
TGGCGGCCCCCCTCTCAAATAAGTAACTAAGGTGCGAAGCCGCTTGTCCCTCCGGGGGCAAGGGC
AGTCGAGTGTGCTAACGCACCCTCACCATATGAATAGTGAGTGACCCCTCTCCTCTCCTTATCAG
TCGAGCCCCCTCTCCTCTCCTTATCAGTCGAGCCCCCTAAAGGGTCCGAATAGTGAGTGACCCCT
CACCATATGAATAGTGAGTGGCTCCGCCCCTCTCCTCTCCTTATCAGTCGAGCCCCCTCTCCTCT
CCTTATCAGTCGAGCCCCCTAAAGGGTCCTTATTAGTCGAGCGTGCTTACGCACCCTAAAGGGTC
CTTGACAGTCGAGCCCCTACCGGTCCTCACCATCGGAATAGTGAGTGGCTCCGCCCCTAAGAAGT
AAGGGCCCTCTCCCCTCGGGGATTGGGGTGGGTGGGTAAATAGTAGTCGAGCCTGCTTGCGCATC
GTTGGTCGAGCCATGCTTCGCATCCTCTCCTCCAATAGTGAGTGA
Right flanking sequence: Indices 821980 -- 822479
GTGCTTACGCACCCTAAAGGGTCCTTATTAGTCGAGCGTGCTTACGCACCCTAAAGGGTCCTTGA
CAGTCGAGCCCCTACCGGTCCTCACCATATGAATAGTGAGTGGCTCCGCCCCTATGAAGAAGTAA
GGGCCCTCAAATGGCAGGTGAAAATCCATGCCCTGTCTCCGTCTCTCTGCATTGAATCCGTTGGC
GGGAAGCATCTCATCCCAGGTGGTCCAAACTTATCATGATATTACAAGGTATCTATTCCTCCATG
ATGAAAAGAATATCCAGTGAGGGGAGAGCAAGGGGTTAAGTACCACCAATACCAGACATAGGCGC
TCAAGCTGTAAGGGATGCAGAGGTAAAGCCAAAAGCAGTCAACCCCACAGATCCACAAGCAGCAG
TAGTTGAAGCTGACTCATTTTACCCAGTTCTATTTGCATCTCCATATGGTGATCAAAGCACAAGG
TATACCCCCTGTCGTCGCACTCTCTACATCATGCCATCACATTAC
Found at i:821970 original size:27 final size:27
Alignment explanation
Indices: 821872--821957 Score: 172
Period size: 27 Copynumber: 3.2 Consensus size: 27
821862 TAGTGAGTGA
821872 CCCCTCTCCTCTCCTTATCAGTCGAGC
1 CCCCTCTCCTCTCCTTATCAGTCGAGC
821899 CCCCTCTCCTCTCCTTATCAGTCGAGC
1 CCCCTCTCCTCTCCTTATCAGTCGAGC
821926 CCCCTCTCCTCTCCTTATCAGTCGAGC
1 CCCCTCTCCTCTCCTTATCAGTCGAGC
821953 CCCCT
1 CCCCT
821958 AAAGGGTCCT
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 59 1.00
ACGTcount: A:0.10, C:0.50, G:0.10, T:0.29
Consensus pattern (27 bp):
CCCCTCTCCTCTCCTTATCAGTCGAGC
Left flanking sequence: Indices 821372 -- 821871
TGGCGGCCCCCCTCTCAAATAAGTAACTAAGGTGCGAAGCCGCTTGTCCCTCCGGGGGCAAGGGC
AGTCGAGTGTGCTAACGCACCCTCACCATATGAATAGTGAGTGACCCCTCTCCTCTCCTTATCAG
TCGAGCCCCCTCTCCTCTCCTTATCAGTCGAGCCCCCTAAAGGGTCCGAATAGTGAGTGACCCCT
CACCATATGAATAGTGAGTGGCTCCGCCCCTCTCCTCTCCTTATCAGTCGAGCCCCCTCTCCTCT
CCTTATCAGTCGAGCCCCCTAAAGGGTCCTTATTAGTCGAGCGTGCTTACGCACCCTAAAGGGTC
CTTGACAGTCGAGCCCCTACCGGTCCTCACCATCGGAATAGTGAGTGGCTCCGCCCCTAAGAAGT
AAGGGCCCTCTCCCCTCGGGGATTGGGGTGGGTGGGTAAATAGTAGTCGAGCCTGCTTGCGCATC
GTTGGTCGAGCCATGCTTCGCATCCTCTCCTCCAATAGTGAGTGA
Right flanking sequence: Indices 821958 -- 822457
AAAGGGTCCTTATTAGTCGAGCGTGCTTACGCACCCTAAAGGGTCCTTATTAGTCGAGCGTGCTT
ACGCACCCTAAAGGGTCCTTGACAGTCGAGCCCCTACCGGTCCTCACCATATGAATAGTGAGTGG
CTCCGCCCCTATGAAGAAGTAAGGGCCCTCAAATGGCAGGTGAAAATCCATGCCCTGTCTCCGTC
TCTCTGCATTGAATCCGTTGGCGGGAAGCATCTCATCCCAGGTGGTCCAAACTTATCATGATATT
ACAAGGTATCTATTCCTCCATGATGAAAAGAATATCCAGTGAGGGGAGAGCAAGGGGTTAAGTAC
CACCAATACCAGACATAGGCGCTCAAGCTGTAAGGGATGCAGAGGTAAAGCCAAAAGCAGTCAAC
CCCACAGATCCACAAGCAGCAGTAGTTGAAGCTGACTCATTTTACCCAGTTCTATTTGCATCTCC
ATATGGTGATCAAAGCACAAGGTATACCCCCTGTCGTCGCACTCT
Found at i:822053 original size:37 final size:37
Alignment explanation
Indices: 821954--822042 Score: 178
Period size: 37 Copynumber: 2.4 Consensus size: 37
821944 CAGTCGAGCC
821954 CCCTAAAGGGTCCTTATTAGTCGAGCGTGCTTACGCA
1 CCCTAAAGGGTCCTTATTAGTCGAGCGTGCTTACGCA
821991 CCCTAAAGGGTCCTTATTAGTCGAGCGTGCTTACGCA
1 CCCTAAAGGGTCCTTATTAGTCGAGCGTGCTTACGCA
822028 CCCTAAAGGGTCCTT
1 CCCTAAAGGGTCCTT
822043 GACAGTCGAG
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 52 1.00
ACGTcount: A:0.21, C:0.28, G:0.24, T:0.27
Consensus pattern (37 bp):
CCCTAAAGGGTCCTTATTAGTCGAGCGTGCTTACGCA
Left flanking sequence: Indices 821454 -- 821953
CACCCTCACCATATGAATAGTGAGTGACCCCTCTCCTCTCCTTATCAGTCGAGCCCCCTCTCCTC
TCCTTATCAGTCGAGCCCCCTAAAGGGTCCGAATAGTGAGTGACCCCTCACCATATGAATAGTGA
GTGGCTCCGCCCCTCTCCTCTCCTTATCAGTCGAGCCCCCTCTCCTCTCCTTATCAGTCGAGCCC
CCTAAAGGGTCCTTATTAGTCGAGCGTGCTTACGCACCCTAAAGGGTCCTTGACAGTCGAGCCCC
TACCGGTCCTCACCATCGGAATAGTGAGTGGCTCCGCCCCTAAGAAGTAAGGGCCCTCTCCCCTC
GGGGATTGGGGTGGGTGGGTAAATAGTAGTCGAGCCTGCTTGCGCATCGTTGGTCGAGCCATGCT
TCGCATCCTCTCCTCCAATAGTGAGTGACCCCTCTCCTCTCCTTATCAGTCGAGCCCCCTCTCCT
CTCCTTATCAGTCGAGCCCCCTCTCCTCTCCTTATCAGTCGAGCC
Right flanking sequence: Indices 822043 -- 822542
GACAGTCGAGCCCCTACCGGTCCTCACCATATGAATAGTGAGTGGCTCCGCCCCTATGAAGAAGT
AAGGGCCCTCAAATGGCAGGTGAAAATCCATGCCCTGTCTCCGTCTCTCTGCATTGAATCCGTTG
GCGGGAAGCATCTCATCCCAGGTGGTCCAAACTTATCATGATATTACAAGGTATCTATTCCTCCA
TGATGAAAAGAATATCCAGTGAGGGGAGAGCAAGGGGTTAAGTACCACCAATACCAGACATAGGC
GCTCAAGCTGTAAGGGATGCAGAGGTAAAGCCAAAAGCAGTCAACCCCACAGATCCACAAGCAGC
AGTAGTTGAAGCTGACTCATTTTACCCAGTTCTATTTGCATCTCCATATGGTGATCAAAGCACAA
GGTATACCCCCTGTCGTCGCACTCTCTACATCATGCCATCACATTACACCTTGCCACCTAATCCC
GTACACATTACACCTACTACCAGCTCGCTAAGCGCCCATCCCTGA
Found at i:824714 original size:17 final size:17
Alignment explanation
Indices: 824692--824725 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
824682 GGTTCTAAGC
824692 CAATCCTAGCTCTCTTA
1 CAATCCTAGCTCTCTTA
*
824709 CAATCCTTGCTCTCTTA
1 CAATCCTAGCTCTCTTA
824726 TATGGTGGTC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.21, C:0.35, G:0.06, T:0.38
Consensus pattern (17 bp):
CAATCCTAGCTCTCTTA
Left flanking sequence: Indices 824192 -- 824691
GGATAGGTAAGCAACTGCAGAACCAACTGGAGAACCATTTCAAGGGTACTAAACCTCTCCGATGA
AACTACTGATGCTATTGGATCTACTGGTATTGGATCGGCTGCTTATGGACCTGGAACAGGATCTC
AATATGGGTCTAGAAGCTATGGGGCTGTCTCTGCTACTTACTTTTATTCTACTGTTGGCTCACCA
GGATCTCCTTGCTGCTACGTGTTCGGGTCTTCGTAGTAGCCCTCCATTATGGTAAGCTTATTCCC
CTTTCTTTCCAATAATGAATCGGAGGTGGGTTCAGTCGCTCCACTTCTGCCCTCACTCCACCCGC
TTGTCAACTCCCTAGGGCTCATCCTTTGTCCGTCCCAAACACCCACCCACTTACTTTCGAACCAC
GGATCCTATCTATCCATAGAGAGACACTTGTCTCGTTCACCCTTCCTTCCCGTACTGATAGTTTC
TTACAATCATGGCTCGGCTCCCGGAGGGGACTCATGGTTCTAAGC
Right flanking sequence: Indices 824726 -- 825225
TATGGTGGTCAGTTTTTTGAAAAACCTCCGCCTCCTCTCCTTATCAGTCGAGTCTGCTTGTGCAT
CCTCAAATGGCAAGAATAGGAGGGAAGGCTGTGAAAACCTCCGCCAAAGCATATATTCTCTATGT
CATTATGCATTCATTCATTATATATGTCATTACGGCAGCCAATGCTCAAGCTGTCATTCGCCCCT
AAGTAATATGGGCCACCCCTCTCGAAGAATATGGGCCCTAAATCAAGATCTCTCCAGGCAAGCAT
TTCCCACTTCCTCCTTATTGGCAACCACTGGCTATTAGCAACCTCCTTAATTTCTCTTGTAAAAT
AGAGCAAGTTCGTATCCTCACTTTCACCCTTTCAGTAGTGAAAATGCCAGGTGCCAAGGCAATAG
CAGCTTAAAGGCCCTTCCCTCTAAGCTCTCTTACCCGCCCAGTGAAGAGCTCAGAGGTATAGAGC
ACTTGTACCTTTGGCTAAAAGCCCGTAACTTCCCGGCTCCATATA
Found at i:825426 original size:16 final size:16
Alignment explanation
Indices: 825389--825432 Score: 61
Period size: 16 Copynumber: 2.8 Consensus size: 16
825379 ATGGAGGAAG
*
825389 TGGGTGCATAAGAGTG
1 TGGGTGCATAAGAGTA
* *
825405 TTGGTGCGTAAGAGTA
1 TGGGTGCATAAGAGTA
825421 TGGGTGCATAAG
1 TGGGTGCATAAG
825433 TAAGAGAGGG
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.25, C:0.07, G:0.41, T:0.27
Consensus pattern (16 bp):
TGGGTGCATAAGAGTA
Left flanking sequence: Indices 824889 -- 825388
GGCAGCCAATGCTCAAGCTGTCATTCGCCCCTAAGTAATATGGGCCACCCCTCTCGAAGAATATG
GGCCCTAAATCAAGATCTCTCCAGGCAAGCATTTCCCACTTCCTCCTTATTGGCAACCACTGGCT
ATTAGCAACCTCCTTAATTTCTCTTGTAAAATAGAGCAAGTTCGTATCCTCACTTTCACCCTTTC
AGTAGTGAAAATGCCAGGTGCCAAGGCAATAGCAGCTTAAAGGCCCTTCCCTCTAAGCTCTCTTA
CCCGCCCAGTGAAGAGCTCAGAGGTATAGAGCACTTGTACCTTTGGCTAAAAGCCCGTAACTTCC
CGGCTCCATATACGGATGCGCAACTACGGATATGCCAGAGGTGGGTGCTTTTACAGATAGACTTT
GAGTTCCGACCCCTTTTAAGGCTCAGGCCTAGACACTGAACTTAAGGTACCAGTATACAGCCCTT
CCTTTAGGGAGGGAATGGGTCAGCCTACACGATGAATGGAGGAAG
Right flanking sequence: Indices 825433 -- 825932
TAAGAGAGGGAAGAAGGTAAGTAAGAATGCTTTAGGAAGGTAGAGTGATTGACCCCGGCTGGAAC
TATTGAAATTGGAAGTATTGACGGAGGCTGAAGGAACTATTTCTGATTCAATTTCATGGAGATTA
TTAGATCAATTAGGCATGTACTGGCCTTTGCTAACCAAGATCCTAACCAAGGTTTGTTAGACCAA
GGTTGTATGTCCTTCCTGTACGGTGACCATCGAGGAGGGTTTATTCACTTGTTGGATATGTCATT
CTGTAAGCTCTGTCGTGCCTAGATGTAACCAAGTCCTACTAGTAGATTCATACCTTCGTAAGCCA
GATCCTGACCTTAGTGATCGTGGTCGTGCTTCTGTCTTTCGAGATTGAGTAGTTTATCCATCCGT
AGCAAAGATAGGTGCGGATTCAGTTGCTTAGCTAGAGGCACAGGCAGAACCAAAAGCAGCTAAGG
CAGCAGGATCAAAGCAAGCAGATCCGAATAATCCTAGTGTAGAGC
Found at i:827159 original size:12 final size:12
Alignment explanation
Indices: 827136--827176 Score: 55
Period size: 12 Copynumber: 3.3 Consensus size: 12
827126 GTTGTCTCCC
827136 TGAAGGACATGGT
1 TGAA-GACATGGT
*
827149 TGAATACATGGT
1 TGAAGACATGGT
*
827161 TGAAGGCATGGT
1 TGAAGACATGGT
827173 TGAA
1 TGAA
827177 CGCTTCATTA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
12 21 0.84
13 4 0.16
ACGTcount: A:0.32, C:0.07, G:0.34, T:0.27
Consensus pattern (12 bp):
TGAAGACATGGT
Left flanking sequence: Indices 826636 -- 827135
AGCACCAGGGGTGGAGGCACCATCCTTTTTGCCATCATTCGTCCACTACCACCTCGCTAGGTGTC
CCTTCCTGTTCCAGTATATGCTCTTGTTTCTAAGGACAATGCAGAGGTAAGGGTGTCGATCCAGT
TGATTCAGCATTTGAATAAGTAGATCTCGTCAGGCATGGAAGGTCGGAGCTATGGCTTAAGTAAG
GAAGAATCGAGCATCCGCTCGTCATCTTTGTCCATCATTGACCCACAACGGAGCATTCTTACTTA
CTGTTACTACAGTGGTATACCTATAGCGCTATAGCCCTGCATCCGGCAGCTTATTAGATACGGAA
TATAACATATGTAAGAATGAGACTGAGTAGGGTCAATCTTGTTCGCTACGCCTATAAGAGCCACA
GCAACAGATATACTCTGGAAAGACTCAACTCGTGGTTAAGACCTTTCCTTCCTTGCAGTATGGGT
TATACCAACGGGAAAGACCTTGCAGTAGGCATGGGGTTGTCTCCC
Right flanking sequence: Indices 827177 -- 827676
CGCTTCATTAACTGCCTTTAGTTGGGATTACATGCCTCATGAACGGCCATCTTTGTGTCCTTTTT
AGGCATTCGTCAGGTACCCGTTATCTCAGCAATCATGCTCCCTTTTTTCTCTTCGTAACGTCTGA
GTAACCCGCCTCATTCACTTCCTCTTTCCCACTTCTTATGCCTTAGCATATGGGAAATGATCCTG
CGTGAATCTGGAAAAGAAAGGGACAACCAATTGAGAGGTAAGGCCAAATTGATTACCACCTTGTT
CTGGCATTGAGAGGGAAAGAACCTGCGTGAGGAATGGCTAGCCTTACTGGCTTATGAGCTTGCTA
TCGAGAGATATGCCCGTCTACTGCCCGTCTACTATAGATTGACATTCAAGGAGCACTGACCACTG
TTCTTCCTTGGTATTGCACTTCCTTGGTGGAGCGACTGCCCGTATACTTTTTAAGGCGCCAAAAG
ACACCAAGTGAGGCGCCATACGTGAGTGAGTGAGTTGCCTAGCAC
Found at i:832185 original size:25 final size:25
Alignment explanation
Indices: 832147--832212 Score: 123
Period size: 25 Copynumber: 2.6 Consensus size: 25
832137 ACCGGCAGGG
832147 GCTCGACTGTTAAGGACCTTTAGGT
1 GCTCGACTGTTAAGGACCTTTAGGT
*
832172 GCTCGACTGATAAGGACCTTTAGGT
1 GCTCGACTGTTAAGGACCTTTAGGT
832197 GCTCGACTGTTAAGGA
1 GCTCGACTGTTAAGGA
832213 GAGGAGAGGA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
25 39 1.00
ACGTcount: A:0.23, C:0.20, G:0.29, T:0.29
Consensus pattern (25 bp):
GCTCGACTGTTAAGGACCTTTAGGT
Left flanking sequence: Indices 831647 -- 832146
GAGTCCTAGACACATGATCAGTCATCACTCCAAGATACACACCATCACGGGTTCAATTCGGGGCC
TAGGAACTACTGAATTCCCAAGATTGATATGAGGGTGAGGAAACGTTAGTTTGCTCATCCTTGTT
TTCAATTCCTATCCCTTAATAGGCCTTTCATTCATATCTTCCCGAACTCTAACTCAGGGTTGACC
TAAAAGGAAAGAAAACGTAATAATCTCATATATAACGAACGATTGAATGACCTTAGCGATCGAAT
GACGCGTTATTATATATATAACGGCGTCCGCGTCGATACATTTTTTCCCCTTCTTCTTTCCTGCC
TGAAAAGCCCATATAAGATAACCATGAAATCTTGTTTTGATGTCACTCAAAATTCTATCAATTTA
GGTACGTTAAGTGACTCGACTAAAAGGCCGCCATCGCCCCTACTACTTTATAGGGGTCACTCACT
CATTCCGATGCCCCCCACCCAATAAGCAAACCCTAACCGGCAGGG
Right flanking sequence: Indices 832213 -- 832712
GAGGAGAGGATGCGCTTTAAGGCTCGACTGTTAAGGATGCGCAAGCATGCTCGACTGTTAACCCC
CCAAACCAATAAGTAAACCCTAACCTTTAGGTGCTCGACCATAAGGACCTTTAGGTGCTCGACCT
TAAGGGATTTATCGCTCGACCATAAGGGCCGCCATCGCCGCCATCGAGAGGAGAGGAGAGGGCCG
GTAGGCGCTCACCATTCCGATGGTGAGGGTTTGAACGCTCGACCAAGACAGCCTTGAGCCAAAAT
AGTCAAAAAAGAGGTCGGCGAATAGCCCTATTTATAGAGGGGAGCGAGACACGGCGAATCGGTCA
AAGTGAAGTGATCCGGTGCGCAAGCAGGCTCTCAATCTAAGGAGAGGAAAGACAGAAATATGATG
TTCCCGCTCCAGTATTCTGTGTGTAATCATCCTTCTCTACGAAGGAGAATTCATTGCATATATTA
TGTATTCTAATTCCCTGCATCGTATTAGGTGGGAAATGATTGATA
Found at i:832328 original size:24 final size:24
Alignment explanation
Indices: 832300--832347 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
832290 GTAAACCCTA
832300 ACCTTTAGGTGCTCGACCATAAGG
1 ACCTTTAGGTGCTCGACCATAAGG
*
832324 ACCTTTAGGTGCTCGACCTTAAGG
1 ACCTTTAGGTGCTCGACCATAAGG
832348 GATTTATCGC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.23, C:0.25, G:0.25, T:0.27
Consensus pattern (24 bp):
ACCTTTAGGTGCTCGACCATAAGG
Left flanking sequence: Indices 831800 -- 832299
CCTTTCATTCATATCTTCCCGAACTCTAACTCAGGGTTGACCTAAAAGGAAAGAAAACGTAATAA
TCTCATATATAACGAACGATTGAATGACCTTAGCGATCGAATGACGCGTTATTATATATATAACG
GCGTCCGCGTCGATACATTTTTTCCCCTTCTTCTTTCCTGCCTGAAAAGCCCATATAAGATAACC
ATGAAATCTTGTTTTGATGTCACTCAAAATTCTATCAATTTAGGTACGTTAAGTGACTCGACTAA
AAGGCCGCCATCGCCCCTACTACTTTATAGGGGTCACTCACTCATTCCGATGCCCCCCACCCAAT
AAGCAAACCCTAACCGGCAGGGGCTCGACTGTTAAGGACCTTTAGGTGCTCGACTGATAAGGACC
TTTAGGTGCTCGACTGTTAAGGAGAGGAGAGGATGCGCTTTAAGGCTCGACTGTTAAGGATGCGC
AAGCATGCTCGACTGTTAACCCCCCAAACCAATAAGTAAACCCTA
Right flanking sequence: Indices 832348 -- 832847
GATTTATCGCTCGACCATAAGGGCCGCCATCGCCGCCATCGAGAGGAGAGGAGAGGGCCGGTAGG
CGCTCACCATTCCGATGGTGAGGGTTTGAACGCTCGACCAAGACAGCCTTGAGCCAAAATAGTCA
AAAAAGAGGTCGGCGAATAGCCCTATTTATAGAGGGGAGCGAGACACGGCGAATCGGTCAAAGTG
AAGTGATCCGGTGCGCAAGCAGGCTCTCAATCTAAGGAGAGGAAAGACAGAAATATGATGTTCCC
GCTCCAGTATTCTGTGTGTAATCATCCTTCTCTACGAAGGAGAATTCATTGCATATATTATGTAT
TCTAATTCCCTGCATCGTATTAGGTGGGAAATGATTGATAGATAGTTCTTTTTTTAGGTTTTTTT
CGCTAGACCTCCTCTTCGGGAAGCACTAGATCGGCCGTCCAGATAGTATATCAATCTCCTCACGA
ACTCGTACAATCGATGCCACAGAGATGGTCAACTCCATCATCGGA
Found at i:833605 original size:14 final size:14
Alignment explanation
Indices: 833582--833617 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
833572 ACATCTTCGA
*
833582 GGGAAAGGGATACC
1 GGGAAAGGGATAAC
*
833596 GGGGAAGGGATAAC
1 GGGAAAGGGATAAC
833610 GGGAAAGG
1 GGGAAAGG
833618 AAGCAGCACT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.36, C:0.08, G:0.50, T:0.06
Consensus pattern (14 bp):
GGGAAAGGGATAAC
Left flanking sequence: Indices 833082 -- 833581
ATGAGCAAATTAGTTGATGTTGTACCCGCAAAGCATGGGAAGTGCCGAACATTGGGAACTACCCG
GGAAAGAGTGAGAAACAAGAACGGGAAGAAGCGAAAACCACTTGGGTAAAAAAATTGATTGTATC
TCGCCCTTCGTTCTCCGTAGCAACTGGGGATCGAAGAGCACCAAATTTGATAACTTATGGAGGGA
AAGACGGAGTAGGAGCATGCTACTGGAGACGTAGTAACACATGTTGAAGAGGCCTCCGTCAATCG
TGTACGAACGGAATACGGGTCCAAAGGCAGGGTCGGAGAGGGTTTAGCTGATGGAAATATTGACT
CTTCCGGGAACCAATGACGCGTAAACCATGTCGAACTAAGACCAATCAATATCCGAACGGAACGA
ATTCTAGCTTCTCCCGGAGGAGTTTTCGATGCAAAATTCGTATGATACGGATGAAAGATTCATAC
AATATTCGCTCGTCCGTCCAGCGCAACGGGCGCCAACATCTTCGA
Right flanking sequence: Indices 833618 -- 834117
AAGCAGCACTTTAGCAAGTGGGTGCTTCAGAATTTGTGTAGGGATAGTTTCAGGATAGTGAGTGA
CAGAATTTGCCTTCCCTACTTATATTTATTCCCCTCAAAGGGCTCTGCGAAGTCCTGGTCTTACC
TGCCTGCCTGCCTGAGTGAGCTAGCTCTGCAAGGTCCTGGCCCTTGATTTCTTCCCCTTGGTCGA
GGGGAAGGAATCAATATAGGGATAAACTTACCTACGGGAAAGGGATCTTCGCTACGGGTCCTGGC
TGGGCATAGCCCTTCGCGGAGCTTGCCTCTTCCGGCACAGGACCTTTTCTTTTGTTCCCCACCAC
CCTCCCCCCCGACCAACCAAGCCTTGCCTTCAAATAGCTCTGCCTTGCACTTGAAAAGGCCGGGG
TGAAAATGAGAGGGCAGGACCTTATACCTTCCCTGCCAGGCCAGGAGGGTGAAGGCCCTAACCCC
GAAGGTGCTCGAAACTGGAGATGTCGATAGGAGCATGTCGAAGCA
Found at i:835792 original size:16 final size:16
Alignment explanation
Indices: 835771--835803 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
835761 GGATAGTCGT
835771 TCAGTATCAGTATCAG
1 TCAGTATCAGTATCAG
*
835787 TCAGTATCGGTATCAG
1 TCAGTATCAGTATCAG
835803 T
1 T
835804 TGGTCTCAGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.27, C:0.18, G:0.21, T:0.33
Consensus pattern (16 bp):
TCAGTATCAGTATCAG
Left flanking sequence: Indices 835271 -- 835770
ACCGTAAAGGCTGGATTGAGCAATGGAAGGAGGGTATTTCAGATCTGGGTTTTATCGGACGACAT
GGAGGAACCTGTGTTCGTGATGGTCGAATTCCATCTGGCGATCTCCCGATTTCAATTCGCTGTCT
GAATCCAATAGGTTACCTATCTTTCTTCTGGGCGGGACTCTGCCTGAGACTATCTCAATGGATGG
GAAGCTGTTCATTCGGGTTAGGATCTGACTGAGACTTGCAGGAAGAAGGGGAAGTGATCTGTCTG
GGACCGGAAAGAGGTAGAAGCGCAATGTATAAATACTAATATGCCTTCACTTGCCCATGAAAAAG
GAGAAAAGGATGAGGATGCGCAAGCAGGCTCGACCACCCTTTAGTTACTTATTTGAGAGGGGCCA
CCCAATAAGCATCAAGGAACACCTGAAATCAAGTCTGAAAAGGTTTGGATTCGGTCTCTCCTCAA
TCACATTGGTCAGAAGCTATCTCCGGGTCTGGATGGGATAGTCGT
Right flanking sequence: Indices 835804 -- 836303
TGGTCTCAGTTGGTCGGTATCAGTCGATATCGATATCAGTTGGTCTCAGTTGGTCTTAGTCGGCC
AGTCTCAGTCAGCCGGTCTCAGTGGGTCGGTCGGTCGGATCGTTACTGGCTTCCCTTATTCAGTA
ACTAACCCTATTATATATGTTAACGCACTCCTCCAGGAGGGCTGGCTTATCGGGGGGCTCGCTCC
GCTCAACAAACATCCCCCCCCCCGAGAATAACTGCCTAATCCATACGGGTGATTTCCTCTCCCTA
CAATTGAGAGACTTGCTTGCGCCTCCTTGCTCTCCTCACCCATCAGGGTGAGCAATAAATAACCT
GAGGAAATAAGCAAGCCTTAACCAAAAGTAAGTGTAGCCCTCCCTTACGATTAGTTCAAGTTCTC
GGGGTTTACAGGACAAATATTCACGAGAAAGGCGTACAAGTCTCAATCCCAGTAGTAAGTTAATA
TGCTCTATAAATAGTCATGTAGGGTATTATCCTATAGTAGACATA
Found at i:835824 original size:40 final size:40
Alignment explanation
Indices: 835780--835858 Score: 133
Period size: 40 Copynumber: 2.0 Consensus size: 40
835770 TTCAGTATCA
*
835780 GTATCAGTC-AGTATCGGTATCAGTTGGTCTCAGTTGGTCG
1 GTATCAGTCGA-TATCGATATCAGTTGGTCTCAGTTGGTCG
835820 GTATCAGTCGATATCGATATCAGTTGGTCTCAGTTGGTC
1 GTATCAGTCGATATCGATATCAGTTGGTCTCAGTTGGTC
835859 TTAGTCGGCC
Statistics
Matches: 37, Mismatches: 1, Indels: 2
0.93 0.03 0.05
Matches are distributed among these distances:
40 36 0.97
41 1 0.03
ACGTcount: A:0.19, C:0.18, G:0.28, T:0.35
Consensus pattern (40 bp):
GTATCAGTCGATATCGATATCAGTTGGTCTCAGTTGGTCG
Left flanking sequence: Indices 835280 -- 835779
GCTGGATTGAGCAATGGAAGGAGGGTATTTCAGATCTGGGTTTTATCGGACGACATGGAGGAACC
TGTGTTCGTGATGGTCGAATTCCATCTGGCGATCTCCCGATTTCAATTCGCTGTCTGAATCCAAT
AGGTTACCTATCTTTCTTCTGGGCGGGACTCTGCCTGAGACTATCTCAATGGATGGGAAGCTGTT
CATTCGGGTTAGGATCTGACTGAGACTTGCAGGAAGAAGGGGAAGTGATCTGTCTGGGACCGGAA
AGAGGTAGAAGCGCAATGTATAAATACTAATATGCCTTCACTTGCCCATGAAAAAGGAGAAAAGG
ATGAGGATGCGCAAGCAGGCTCGACCACCCTTTAGTTACTTATTTGAGAGGGGCCACCCAATAAG
CATCAAGGAACACCTGAAATCAAGTCTGAAAAGGTTTGGATTCGGTCTCTCCTCAATCACATTGG
TCAGAAGCTATCTCCGGGTCTGGATGGGATAGTCGTTCAGTATCA
Right flanking sequence: Indices 835859 -- 836358
TTAGTCGGCCAGTCTCAGTCAGCCGGTCTCAGTGGGTCGGTCGGTCGGATCGTTACTGGCTTCCC
TTATTCAGTAACTAACCCTATTATATATGTTAACGCACTCCTCCAGGAGGGCTGGCTTATCGGGG
GGCTCGCTCCGCTCAACAAACATCCCCCCCCCCGAGAATAACTGCCTAATCCATACGGGTGATTT
CCTCTCCCTACAATTGAGAGACTTGCTTGCGCCTCCTTGCTCTCCTCACCCATCAGGGTGAGCAA
TAAATAACCTGAGGAAATAAGCAAGCCTTAACCAAAAGTAAGTGTAGCCCTCCCTTACGATTAGT
TCAAGTTCTCGGGGTTTACAGGACAAATATTCACGAGAAAGGCGTACAAGTCTCAATCCCAGTAG
TAAGTTAATATGCTCTATAAATAGTCATGTAGGGTATTATCCTATAGTAGACATAATACAAATAC
TAGTAGCAATCAGAATAGTAATAGTACTTATAATCTATCATGTTT
Found at i:836963 original size:24 final size:24
Alignment explanation
Indices: 836916--836963 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
836906 TTTCGATCTC
** *
836916 CTCCTATAAAGGTATTTTAGGGGG
1 CTCCTATAAAGGTAAATTAAGGGG
*
836940 CTCCTATAGAGGTAAATTAAGGGG
1 CTCCTATAAAGGTAAATTAAGGGG
836964 GCAAACCTAG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.29, C:0.12, G:0.29, T:0.29
Consensus pattern (24 bp):
CTCCTATAAAGGTAAATTAAGGGG
Left flanking sequence: Indices 836416 -- 836915
TTTTCAAGGTGATAATTCCTACAGTACCCAGTACATCTAAACTGAGTTTTTGCTCGAAACTAGTC
TAATTGCACAGAATCCTCACCCATCTGTCAATATCCAATCAAAAAGTAATAATAGATTTTATGCC
AACCGAATACAACCTAATATACTAAAGTAATGCTCAGCTCGATATGTGAGGAGTTCAACAAGAGT
CAATGAAGGCAGGAAAAAGCGCTGCTTGCGCTGACTTGTTTCTCGTAGCACTCTAAATAGTAGTA
AGAGCAGACCCATGAATGGAGATACCACTGAGACGTACTAGCTATGGTAGATCGGGGAATGAAGT
TGGCAAACGCCCATACCCAATGCACCCACAGCGTTATGTATCGGGGATCTCCAGTACAAGGGTTA
CGCTCAGATTTGATCCTTATAGAGATAGAGTAATGCTTTAATAGATTTGAATGGAGTAGAATGAA
ATGGACCAAAAAAGGCTGATTACACTGACATTCGGTTTCGATCTC
Right flanking sequence: Indices 836964 -- 837463
GCAAACCTAGGAATGGGAGAACTTAGAAATACTGAGCCGGGTAGACCGGGGAATGAAATTGGCAA
ACGCCGTGTGGACTCAATGCATTCGACTGTTCTTTATCGAATCATTCCATTCTCTAAGGTTAGCC
AATTGCTCACCTCTTGCTGGGCGTAATAAGCATGCTCGTTAGCTTCGGGTGATTTGGTGAAATTC
CAACCACTATGAATGCAAGAGCTCGCAAAGAGGTACTAAGACCGATAGATCGGGGGAATAATATT
TGCATAATGCCTGTAGTAGACCCAATGCATTTGGGCTTTTCCCCCGTAGCAGTTTCCAGTTCAAG
GTGGTTGGTATCCATCATAAAACACCGATAGCTTAGCATTCATCAATAGCTTAGGATTCAGTAAT
CAATCTCTACGTCTTCGGGGCTAATAGTATCTATAAGTGCCTTGCTTTAAGGCTGAGATGGACAG
GATTTGAACCTGCAACTCTTAGACACTTCATTGAGTAGTGCACTA
Found at i:837857 original size:26 final size:26
Alignment explanation
Indices: 837827--837876 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
837817 GGGGCGGAGC
837827 CACTCACTATTCATATGGTGAGGGGT
1 CACTCACTATTCATATGGTGAGGGGT
837853 CACTCACTATTCATATGGTGAGGG
1 CACTCACTATTCATATGGTGAGGG
837877 ATCATAACCT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.24, C:0.20, G:0.26, T:0.30
Consensus pattern (26 bp):
CACTCACTATTCATATGGTGAGGGGT
Left flanking sequence: Indices 837327 -- 837826
TTCATCAATAGCTTAGGATTCAGTAATCAATCTCTACGTCTTCGGGGCTAATAGTATCTATAAGT
GCCTTGCTTTAAGGCTGAGATGGACAGGATTTGAACCTGCAACTCTTAGACACTTCATTGAGTAG
TGCACTAAGCCGACCCAGTAGCTAATCAGTTCAGTTCCTGAGTCCAGGGTACCGATCAATCCCCG
AAGGGCACTCCCGAAGGGTACTAATGCCCCTTCGGGTATAAAGAAGGGAATTCTATAGGACCGAT
CTACTCTACCATCCCTCCCTCCGCTCATCAGTTCATGAGGAGGGTCGTGCCTGTAGCTCATAAGT
TCCTGAGGTAGGAGGAGTGCCTTCCCTATAGATCTAACCCCCCAGCTAGGGCCCTCTCCCGGGGG
TCGAGCGTTCGTTACCTCACCCTATATTTCTTACTTAGGGGCGGAGCCACTCACTATTCATATGG
TGAGGGTGCGTAAGCACACTCGACTGTCCAGGAGAGGGGCGGAGC
Right flanking sequence: Indices 837877 -- 838376
ATCATAACCTACCCAGCTAGGGCCCTCTCCCGGGGGTCGAGCGTTCGTTACCTCACCCTATATTT
CTTACTTAGGGGCGGAGCCACTCACTATTCATATGGTGAGGGGTCACTCACTATGAGTTAAGGCA
CTTTGCCGATCAGTAACTGAACTGACTTATATCCATATGGAATGAAATGACGGACAACTACCGCA
ACATATATAATGAGATGATGGAATCTCGCTACTGCAACTCGAAGAATTCAAGCCGAGGAGTCACT
TAATAACAGGCCTGGAATAATAATGGTAGAGGGCTTTACACAATACACCGGTTCCACAACGATAT
TTGACATTGAGGTTAGTTAGGACGTTTGTGAGTGAGTCATCTCTTTTCGACTGCCTTCCGTTCTA
TCCAATTCACCCAGTACAACAACGCTTGCCTCCATGTTTGCTAATGAGGAGAGCGAAAAAGAGAC
CGCTTGCCGGAATGGTTGCTATTGATCGCTATCGCTTTCCCCATG
Found at i:839198 original size:8 final size:8
Alignment explanation
Indices: 839187--839226 Score: 80
Period size: 8 Copynumber: 5.0 Consensus size: 8
839177 GCCTGGCTAC
839187 CTGACTTA
1 CTGACTTA
839195 CTGACTTA
1 CTGACTTA
839203 CTGACTTA
1 CTGACTTA
839211 CTGACTTA
1 CTGACTTA
839219 CTGACTTA
1 CTGACTTA
839227 TAGGGTGGGA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 32 1.00
ACGTcount: A:0.25, C:0.25, G:0.12, T:0.38
Consensus pattern (8 bp):
CTGACTTA
Left flanking sequence: Indices 838687 -- 839186
GTTAGTGAAGTGGGCAGTACCGATACGTTCAGGACGGTGTTATACCTGACCAGTTTAGATACCAT
GTGCTCAGTCAGCGAGTGTGAGGTGAGGTTCGAGGTTAGAGTTGGAGGTAGAGGGTCAAGGGATA
TGTATGTCATTTCTAGTTAATGACCGCCTCCTGTTGATGCATGGCTATTGGCTAACCAACTAGCA
ATGACTTCCCGTCAATGGCTATCTATCAGCTGGCTGGCTCTGAAGCCGAAGATTCCATTTTCTTA
ATTGAATGTCTGGATTAGCGCCGACACTTGATTGAACCGACAGAATCTAAAGCTGGATCTGGATC
ATCTGCTTAGCCTTAACTTTCCTAAGCCGGGGGTAGCGCTCAACCCTTTCAACCCGCCTAACCAA
GCAATCCAAGCAAAGCGAAGTGGTGCTTACAAACTCTATGCCCTGCCTATGATCGATATTAGTGA
CTATACTGAATTGGCTCCTGTACTTCTAGTATCCGGCCTGGCTAC
Right flanking sequence: Indices 839227 -- 839726
TAGGGTGGGAAATCAGGCCTGGCTCCGGTCTTCGATTCTTACGCCATTGATCGTGCAGCCCTGGC
AACCGCATGCACATGAGTGGAGTTATATGTCTTTCATTTCCCTCGTCCTATCACCGAAAGAGTGG
AAATACCAGAAGGACCGAAGATGCTTCAACCATAGTGGAACCTACAAATATTCATGAGGCAAGTG
AAGTGTGCAGGGATAAGTCAGTAGGTTTCATAAAGGTAAATAGTCATAGTGATATGGTACCCCCG
AAGTAAGGAATATGTCAGCAAGTGTGTGTAGTCAAACGCCCCCCGTATACAAGGATGCTCTGTCA
AACGCAGGTCCAGTCCAACCAATGCTTTTGCTTTCTGTTGAAGCCCTTTTCCATTCAATGCAATA
AGGTTGGGGCATTCTAAAGTAAGGTAAGTGAGTAGTGAGTAACTAGAGGTAGGTAAATATCAAAG
GTTGGTAGCACAGTTGCACTTGAAGAGTCAAGGGGCAAATAGTCT
Found at i:840310 original size:118 final size:118
Alignment explanation
Indices: 840102--840336 Score: 470
Period size: 118 Copynumber: 2.0 Consensus size: 118
840092 ATGACATAGA
840102 GAAGATCGAAATCTCTCTCCTTGCACTAGGAAGCGCAAGACCCTCCGGACCTTCTCTCAATCTCT
1 GAAGATCGAAATCTCTCTCCTTGCACTAGGAAGCGCAAGACCCTCCGGACCTTCTCTCAATCTCT
840167 CTGGTCATGTAAGAAATGACATCTATCAGATCAGTCATCAATCTGGTATGACC
66 CTGGTCATGTAAGAAATGACATCTATCAGATCAGTCATCAATCTGGTATGACC
840220 GAAGATCGAAATCTCTCTCCTTGCACTAGGAAGCGCAAGACCCTCCGGACCTTCTCTCAATCTCT
1 GAAGATCGAAATCTCTCTCCTTGCACTAGGAAGCGCAAGACCCTCCGGACCTTCTCTCAATCTCT
840285 CTGGTCATGTAAGAAATGACATCTATCAGATCAGTCATCAATCTGGTATGAC
66 CTGGTCATGTAAGAAATGACATCTATCAGATCAGTCATCAATCTGGTATGAC
840337 ACATATCTCA
Statistics
Matches: 117, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
118 117 1.00
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.26
Consensus pattern (118 bp):
GAAGATCGAAATCTCTCTCCTTGCACTAGGAAGCGCAAGACCCTCCGGACCTTCTCTCAATCTCT
CTGGTCATGTAAGAAATGACATCTATCAGATCAGTCATCAATCTGGTATGACC
Left flanking sequence: Indices 839602 -- 840101
CCATTCAATGCAATAAGGTTGGGGCATTCTAAAGTAAGGTAAGTGAGTAGTGAGTAACTAGAGGT
AGGTAAATATCAAAGGTTGGTAGCACAGTTGCACTTGAAGAGTCAAGGGGCAAATAGTCTAAATA
GCGGGTACCCAAGTACGATTAATTAAGTAAGTGTTCGCTTCGCGCCTATCGTTTGGATACGCTAC
CTTTGAGTACTGAATTTACCCACTTTGACGAGCGTTTGAACTCTTACTATTAACATAACTATATG
CCACCTTCTCACTCTACAATTTACCACCTCGATAGGCCATGTTTGCAGAGGAGAATCTACCATCC
CTCTCCCCCTCTCTGTTATTGGGGGGAGGGGGAATGACGTAGATAAAGAATGATTAGTAATTAGA
TATATATCTTTGTATACGAGATTCTGGTACGATCGATGAAAAGAGCTACGATCCCATACGATAAG
AAAGCGTAATGACATATATAATGAATGAATGCATAATGACATAGA
Right flanking sequence: Indices 840337 -- 840836
ACATATCTCATTCATGCATAATGACATATATAATGAGATATCTCTTTGTATACGATATTCTTCTA
TTTATGAAATAAAGTCAATTCATTTTCCTTATTGGGTGGGTGGTTGTCTAATCTAAAGGCTGCTA
TATATTCATTCTATCCGTGCCTCTCTCTATTCCTTCCGTGTGAGTACGTGTTCCTTCCTATTGTG
AGGCCATGTAACTAATCCGTCCGTGTGGGCGCCTTCTGTGTGAATACATGTATCTATACCTTGAG
AGTACGTGTGGGCTATCGTGATACCAGTACGTGTGGGCTATTGTAATGCCTTGATGTTCTCCTAC
TGTGAGTCCATGTTCATATTGTAATGCCGTGATGTTCATACGTGTTCGGATTGTAAGGCCGTCGT
GTCACTGCACTAATCCGTCCGTGTAATGCCTTCCCTTCCCCCTTCCATGCGTGTGAGTAAGTGTA
TCTATTCCTTCATTTGGTGAGTATGTGTATCTCTACGTAAAGCTA
Found at i:845540 original size:15 final size:15
Alignment explanation
Indices: 845520--845549 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
845510 TGGTTTTTGA
*
845520 CTACCCTACCTTAAC
1 CTACCCCACCTTAAC
845535 CTACCCCACCTTAAC
1 CTACCCCACCTTAAC
845550 TATATCTATA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.27, C:0.50, G:0.00, T:0.23
Consensus pattern (15 bp):
CTACCCCACCTTAAC
Left flanking sequence: Indices 845020 -- 845519
GCTTGCTGATGCCCAGAGTAAGCACTTGTTTTTCCTGATCTCCATTAGCTATACCATTCGGGCAA
CTGTATCTGCCTATCAGTCTATCCTTTCCGTTGTTCACTTATTCTACTAGAGTGGGTATGGGCGA
TATGGGTGTGGTTCTTATTGTGTAATCCCTTTTTATTCCCCCCGTCTTAGCTGCTTTTGCTTGGT
CTATTCAATCTACTTAGTCAACTGGTGGATATGCTTCTAGCCTTGGACTTGGATATGCATGCTTA
CTCGGATGCTTGAAATGCTACCTTTGCTTCCGTCTCTATCTCTGTTTCTGGTGCCTGGGATGCTT
CCTGTGTTCCCACCTATGCTTCTAGTGCTTGTGCCTTTGCCTACCTTACTGGTGCGGGGTGAACT
ACAATGGGTTTTTATGCTCGCTCGAGTGATTGGTTGGCCCCTAAAACCCTAGTTTAGGATTAATA
GGCTGGGACCTGTTGAGTAAGATTGCGCGAGCTGGTGGTTTTTGA
Right flanking sequence: Indices 845550 -- 846049
TATATCTATATCTGTCCATTTGGTAAGCTACCGCTTTCACTACTATAGAATGGATGGCCGAAAAC
TTGCACTTGCGACCTCCAAGCACTACCTTTGTTACTTTCGTAGGATCCGATTCCCTTTTACCTGC
ATGTTCTATATAGGTTACGGCTACCGGTGCCCAAGGAACAAATACCCAGCTCCCTGCCAACTCAC
TCAGCTAGTGGCTCAAGCCGCAGATATGGACGGATAGACGCTTAAGAAATAGAAATAACATATAA
ACTCTTACCCGGTGTTTCTAAACGGTCATAAACATCCCTGGATCTATCATAATGAGCTTTTCTCA
CATGGCTGGTATTACCTCTCCCTTATAAACCCTCATAGTCAATTTGCTAAATCAAACACCTAAAT
CTAGGCTATCTAACTTGCTAAATCTCCACCTATATAGTGGCATTGACAGCTACACTTATACCTAT
ACCTACTACTATACCACCCTCTAACACCTCTACTATAGCTATAAA
Found at i:847169 original size:25 final size:25
Alignment explanation
Indices: 847134--847182 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
847124 TAAAATGAAA
*
847134 CTTTAGTTGCTCGACTGATAAGGAC
1 CTTTAGGTGCTCGACTGATAAGGAC
*
847159 CTTTAGGTGCTCGACTGTTAAGGA
1 CTTTAGGTGCTCGACTGATAAGGA
847183 GAGGAGAGGA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.22, C:0.18, G:0.27, T:0.33
Consensus pattern (25 bp):
CTTTAGGTGCTCGACTGATAAGGAC
Left flanking sequence: Indices 846634 -- 847133
TAAGCTAGATAGAAACTCCCATAGCATAATAAGACTACACTCTCTACTCTATGTATAATGCTTAC
TATATAAAAATACACAACTCCATGGTGTTCAGCTATAGCCATGGTAACAACCCTTATAATAAGTA
TCCTCAACAACGCCGCTTCCACGTTGAGATACACGTCGTTAACTGGCTGGAAGAAAGTGGAGTTC
TTCGAGCGCCTGCCTCCTTCTTTCTTTTTTGCGAGCCGAGCCTTTATTCGATTCGACGAGCCCAC
TTCTTGTTGGTTGGGGTGATCCGCTTTCAATTTCCCGAGCGAGGAGATAATCAACCAACACATCA
CAGTCGAGAGACCTGGTCTGGGCTTGGCTACTTGGCTTGGATACCGGGATGCTTTCTGGCTGGAA
TAATGAAAGAGGGAGGTTCGCTTTCGATCCAATATTCTTTTGAAAAAGAAAAAAAAGGATGCGTA
AGCAGGCTCGACCAAAAGCCCCCCCACCCAATAAGTAAAATGAAA
Right flanking sequence: Indices 847183 -- 847682
GAGGAGAGGATGCGTAAGCAGGCTCTCAATCTAAGGAGAGGTAATATGTTTTCGGTAGTTTCGCT
ATCAATTTGCTAATAAACTACCGAACAATCTTAAGCTTAACGTTCCCTCCTACACAACAAAAACA
AACATGATTCTTTCAACTGTCTTTCAACTGGTTGTTTATTTAGGTTATGGAGAACTTGGCACGAA
CACGTCCTTCCTTCCTGGGCACGATCGAGAACTGGTGGTCACGTAGAATTGTGTCGACACCATAT
CCTAGTCTCTTATCTGTCTGCTCATTTCATCCTATACATACTAGCTTTGGGACACAGAATTCAAG
GTGTGGACAAACTGATGAACCCACTCTGACCTAGGGTCTCCTTTGTCTGTCCATGTCTTTTTACA
AAACCATACATCTTCCTGGGGATCTTCTATTCCTTTAGACCTATTTGCTAATTCCAACTCCTGAG
AGGGATGAAATGGAAGAGTCATACACTGTACTACCTACATCCAAT
Found at i:848242 original size:13 final size:13
Alignment explanation
Indices: 848226--848256 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
848216 TGGGCTGCTC
848226 GGTTGGGCTTATA
1 GGTTGGGCTTATA
*
848239 GGTTCGGCTTATA
1 GGTTGGGCTTATA
848252 GGTTG
1 GGTTG
848257 AGCTCATGGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.13, C:0.10, G:0.39, T:0.39
Consensus pattern (13 bp):
GGTTGGGCTTATA
Left flanking sequence: Indices 847726 -- 848225
GTGGTCCGGAGGACGAATGAGGCAGCCCACATATTCGAGAGGGGTGGGACTAGGTCTTCAAGATG
GGCGGTCCAACGGACGGACCAATGACAGCCCGCATCACCAATGGACGAGAGGATTGGGCCTCCCA
TATTCTCACATACCGGATTCCCCTCTACAACATGACACATACACCCAACATGCACGGTATGGTAC
GGGGCCAAGTGATTGAGGCACAGACATAGGGTCATTGTCAATAGCTGGTAGTCGATCCAAGAGTC
GATGCACTCAATACTAGTCATAGCTGGGCTGGGCTACTTGGAAAGGTTGGGCTTAAGTGAATGGT
TTCTGTGAACGGCTTATGCAGTGAGTGAATGGCTTCTATGCGCAGTGAAATAACACGGGGCTAGG
CTAGGTGCATGCTCTTTTTCAGCTTCTATTTGCAGTTTGCGAACGGATGGCTCCCTGTTAACGGC
TTCTTTGAATGGATTCTATGTCTGGGCTGGGCTCCTGGGCTGCTC
Right flanking sequence: Indices 848257 -- 848756
AGCTCATGGGATCCTGGGCTGGGCTACTTGGCTTGGCTCCCGGGCTGCTCGGTTGGGCTACTCGG
TTGGGCTGGCATTGCCGTAGAGCATAGGATATCATAGCCGATTGATCATTGCCGATAGATAGCCC
CAGTATTGGAAGGTCAGTTCCAGTCAGCCGAATATCTCTCTAAATATCAATATCGATAGAAAGAT
ATACCTCTAAATACCGATACTCTAGATATATCTCTTTAGATAGATCTAGCGGGCATAGGATGTAT
GGATGGAGGTGAAGGAAGAGGGCAGAGGGCTAAAGGTGAAGTCTGTAGGGATATGAGGGAAGAGG
TGATAGTTCGAGTTCGAGGTATATGTTGGCATCGTCCGTTGGACCGCCCTACCACTCTAATAGGA
CTGGCTTTGATGCTTTCACTCGATCAAATCTTATGGTTAGTAAGCTCTTCTATTCATATCAAGAT
CCTCCTGCGACTGGCCCTGTCTCTATGCCTCTTCTAGTGGCTTTG
Found at i:848314 original size:13 final size:13
Alignment explanation
Indices: 848298--848329 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
848288 CTTGGCTCCC
848298 GGGCTGCTCGGTT
1 GGGCTGCTCGGTT
*
848311 GGGCTACTCGGTT
1 GGGCTGCTCGGTT
848324 GGGCTG
1 GGGCTG
848330 GCATTGCCGT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.03, C:0.22, G:0.47, T:0.28
Consensus pattern (13 bp):
GGGCTGCTCGGTT
Left flanking sequence: Indices 847798 -- 848297
CAACGGACGGACCAATGACAGCCCGCATCACCAATGGACGAGAGGATTGGGCCTCCCATATTCTC
ACATACCGGATTCCCCTCTACAACATGACACATACACCCAACATGCACGGTATGGTACGGGGCCA
AGTGATTGAGGCACAGACATAGGGTCATTGTCAATAGCTGGTAGTCGATCCAAGAGTCGATGCAC
TCAATACTAGTCATAGCTGGGCTGGGCTACTTGGAAAGGTTGGGCTTAAGTGAATGGTTTCTGTG
AACGGCTTATGCAGTGAGTGAATGGCTTCTATGCGCAGTGAAATAACACGGGGCTAGGCTAGGTG
CATGCTCTTTTTCAGCTTCTATTTGCAGTTTGCGAACGGATGGCTCCCTGTTAACGGCTTCTTTG
AATGGATTCTATGTCTGGGCTGGGCTCCTGGGCTGCTCGGTTGGGCTTATAGGTTCGGCTTATAG
GTTGAGCTCATGGGATCCTGGGCTGGGCTACTTGGCTTGGCTCCC
Right flanking sequence: Indices 848330 -- 848829
GCATTGCCGTAGAGCATAGGATATCATAGCCGATTGATCATTGCCGATAGATAGCCCCAGTATTG
GAAGGTCAGTTCCAGTCAGCCGAATATCTCTCTAAATATCAATATCGATAGAAAGATATACCTCT
AAATACCGATACTCTAGATATATCTCTTTAGATAGATCTAGCGGGCATAGGATGTATGGATGGAG
GTGAAGGAAGAGGGCAGAGGGCTAAAGGTGAAGTCTGTAGGGATATGAGGGAAGAGGTGATAGTT
CGAGTTCGAGGTATATGTTGGCATCGTCCGTTGGACCGCCCTACCACTCTAATAGGACTGGCTTT
GATGCTTTCACTCGATCAAATCTTATGGTTAGTAAGCTCTTCTATTCATATCAAGATCCTCCTGC
GACTGGCCCTGTCTCTATGCCTCTTCTAGTGGCTTTGTATGTGCTACTTATGCAGAGCTTTGCAA
TGATATTCCCTACCTCTGCTGCTTTCCCAGGCTAAATCCAAAATA
Found at i:852745 original size:9 final size:9
Alignment explanation
Indices: 852731--852758 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
852721 CACGCCCTCT
852731 CGATGGCGG
1 CGATGGCGG
852740 CGATGGCGG
1 CGATGGCGG
852749 CGATGGCGG
1 CGATGGCGG
852758 C
1 C
852759 CCTTATGGTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.11, C:0.25, G:0.54, T:0.11
Consensus pattern (9 bp):
CGATGGCGG
Left flanking sequence: Indices 852231 -- 852730
ACCCGGGCGGAAGTGCGATGTGTCCGGAAACTCGAGATCGTAAATGGATTCGGGTACCGCTCTTA
TCGCCTCTTTCATGATCTTCTCTATTGGTACTACTACTGTGAGCGGTCTGAACTTCAACCCCTAT
TTCTTATATTGGAAAGGGGAGCAAAGCCCGTTTTTTGCTCCCCCTCGATATCTGAGGCCCTCCTG
CCGGGACAGATTGGATTTCTGGAAACAATCTTTCTAGCCTCTCCTGCCTGCCAAACTGATTGAAT
GGCTTTCCTTGCACTAGGAAGCGCAAGCCCCTCCGGGACCTTTCTTTCCACCTTACCAGTGTGGA
TGGCTTGAGAGAGACTCACTCTCTATTGCCTGGTTCCTGGTCAAGAGAGCAAAGCACGTAGCCTG
CCCGGTTCCTGGTCAAGAGAGCAAAGCACGCACCTTCAGACCGATTCACTCTGCGTAGATTGACT
GAACGCAGAAACTATACGCACGCTCTACTGACGAGCACGCCCTCT
Right flanking sequence: Indices 852759 -- 853258
CCTTATGGTCGAGCGAGAAATCGATGGCGGCCCTTATGGTCGAGCGAGAAATCGATGGCGGCCCT
TATGGTCGAGCGAGAAATCGATGGCGGCCCTTATGGTCGAGCCCCTACCGGTCCTCTCCTTAACA
GTCGAGCCTGCTTGCGCATCCTTATGGTCGAGCGAGAAATCCCTCACCATCGGAATGGTGAGCCC
CTACCGGGCCTCTCCTTAACAGTCGAGCCCCTGCCGGACCTTATGGTCGAGCCCCTACCGGTGAT
GGCGGCCTTAACAGTCGAGCCTGCTGTAGCATCCTTATGGTCGAGCGACTCCGTCCCTTGATACG
CGTCAATTGCTCATCGTTGTAGGGTTTTGAGGGCTTATCCCCTCTTCCGTACTCCTCAAAGGTCC
GCCGTAATGCTGGACGTCAGATCTTAGGATGATCCGATGACATGCGCACTCCAGTCTGACAACCA
TAAGATTGTCATTTGGGAGTGCACATTGGTGCCGTGTGTCCTTCT
Found at i:852784 original size:31 final size:31
Alignment explanation
Indices: 852749--852865 Score: 234
Period size: 31 Copynumber: 3.8 Consensus size: 31
852739 GCGATGGCGG
852749 CGATGGCGGCCCTTATGGTCGAGCGAGAAAT
1 CGATGGCGGCCCTTATGGTCGAGCGAGAAAT
852780 CGATGGCGGCCCTTATGGTCGAGCGAGAAAT
1 CGATGGCGGCCCTTATGGTCGAGCGAGAAAT
852811 CGATGGCGGCCCTTATGGTCGAGCGAGAAAT
1 CGATGGCGGCCCTTATGGTCGAGCGAGAAAT
852842 CGATGGCGGCCCTTATGGTCGAGC
1 CGATGGCGGCCCTTATGGTCGAGC
852866 CCCTACCGGT
Statistics
Matches: 86, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 86 1.00
ACGTcount: A:0.21, C:0.24, G:0.36, T:0.20
Consensus pattern (31 bp):
CGATGGCGGCCCTTATGGTCGAGCGAGAAAT
Left flanking sequence: Indices 852249 -- 852748
TGTGTCCGGAAACTCGAGATCGTAAATGGATTCGGGTACCGCTCTTATCGCCTCTTTCATGATCT
TCTCTATTGGTACTACTACTGTGAGCGGTCTGAACTTCAACCCCTATTTCTTATATTGGAAAGGG
GAGCAAAGCCCGTTTTTTGCTCCCCCTCGATATCTGAGGCCCTCCTGCCGGGACAGATTGGATTT
CTGGAAACAATCTTTCTAGCCTCTCCTGCCTGCCAAACTGATTGAATGGCTTTCCTTGCACTAGG
AAGCGCAAGCCCCTCCGGGACCTTTCTTTCCACCTTACCAGTGTGGATGGCTTGAGAGAGACTCA
CTCTCTATTGCCTGGTTCCTGGTCAAGAGAGCAAAGCACGTAGCCTGCCCGGTTCCTGGTCAAGA
GAGCAAAGCACGCACCTTCAGACCGATTCACTCTGCGTAGATTGACTGAACGCAGAAACTATACG
CACGCTCTACTGACGAGCACGCCCTCTCGATGGCGGCGATGGCGG
Right flanking sequence: Indices 852866 -- 853365
CCCTACCGGTCCTCTCCTTAACAGTCGAGCCTGCTTGCGCATCCTTATGGTCGAGCGAGAAATCC
CTCACCATCGGAATGGTGAGCCCCTACCGGGCCTCTCCTTAACAGTCGAGCCCCTGCCGGACCTT
ATGGTCGAGCCCCTACCGGTGATGGCGGCCTTAACAGTCGAGCCTGCTGTAGCATCCTTATGGTC
GAGCGACTCCGTCCCTTGATACGCGTCAATTGCTCATCGTTGTAGGGTTTTGAGGGCTTATCCCC
TCTTCCGTACTCCTCAAAGGTCCGCCGTAATGCTGGACGTCAGATCTTAGGATGATCCGATGACA
TGCGCACTCCAGTCTGACAACCATAAGATTGTCATTTGGGAGTGCACATTGGTGCCGTGTGTCCT
TCTTTCATCATCGTGACATCATGCGGGGCCCTTCCCTTCTCGGTCATGCGTAAATGTTCCTTGTA
ACATGCTCTCTCTTCACTGGATGAAGGGTCCTCTTGTGGGTGCAT
Found at i:855668 original size:24 final size:24
Alignment explanation
Indices: 855610--855680 Score: 126
Period size: 24 Copynumber: 3.0 Consensus size: 24
855600 TCTCCCTCTC
*
855610 CCTTAAGGTCGAGCACCTAAAGGT
1 CCTTATGGTCGAGCACCTAAAGGT
855634 CC-TATGGTCGAGCACCTAAAGGT
1 CCTTATGGTCGAGCACCTAAAGGT
855657 CCTTATGGTCGAGCACCTAAAGGT
1 CCTTATGGTCGAGCACCTAAAGGT
855681 TAGGGTTTAC
Statistics
Matches: 45, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
23 22 0.49
24 23 0.51
ACGTcount: A:0.27, C:0.25, G:0.25, T:0.23
Consensus pattern (24 bp):
CCTTATGGTCGAGCACCTAAAGGT
Left flanking sequence: Indices 855110 -- 855609
TCCTTATTAGTCGAGCCCCTAAAGGGTCCTGGTTAGTCGAGTCACTTAACGTACCTCTCCCAAAT
AGTTCTTTCTCGTTTTCAATTTACTTATTGCCCCACCCAATAAGTCAACCCTACCAGTCCCGAGC
CCCTGACGGACCTCCTTTTGGGGGCGTATGGGGTGCTTATTTGGTGAGGGGCCCCAAAGGAGAGT
TGTTTCGTCTCCTTCCTACTCCTCTCCTCTCTTAACAGTCGAGCACCTAAAGGTCCTCTCCTCTT
GGGTTTACTTATTGCCCCACCCAATAAGTCAACCTGGGGTCGAGCACCTAAAGGTCCTTATCAGT
CGAGCCCCCTAAAGGGCCCTATATTCTTTAGGGGTCACTCACTATTCATATGGTGAGGGTCCTTA
TCAGTCGAGCCTGCTTACGCATCCTTATCAGTCGAGCACCTAAAGGTTAGGGTTTACTTATTGGT
TTGGGGGGTTATCAGTCGAGCCTGCTTACGCATCCTCTCCCTCTC
Right flanking sequence: Indices 855681 -- 856180
TAGGGTTTACTTATTGGTTTGGGGGGTTAACAGTCGAGCATGCTTGCGCATCCTTAACAGTCGAG
CCCCTGCCGGTTAGGGTTTGCTTATTGGGTGGGGGGCATATGAATGAGTGAGTGACCCCTAAAGA
ATATAGGGCCCTCCACTTACAGCCTAAAAGCTTCCACAAGGCCGAAAGTGACTAAGATATTACAG
TAGGGGGGAGTCACGATACGAAGTAATAGTGAGTGGTAAGCCAAAATGACACCATACATGTTTAA
AGAAAAACTCAACAGCTTTGGGAGCATCTATAGTCTTGTTTCATGAAAAGAATATGGGCATTTCA
ATCTACATACAACAACAAAGATTCCCAAGGCCTAGAGGGAACTGGAAGTGGCTGGTATAAACCAA
ACTGATTGTTGGAAGGCTTAGATTGATCGCATGGAGAACATCTTCAAATGAAATCTTCCACATGC
CCCCCCACGGAAGACCAATCAAAATCTCTCTGTCTTCCTTGATGC
Found at i:856962 original size:51 final size:51
Alignment explanation
Indices: 856895--856995 Score: 202
Period size: 51 Copynumber: 2.0 Consensus size: 51
856885 GGGGAAGCCT
856895 ACGGTTGCAATATATATAATGACCGCCTACAGAATATATAATGCCTATACC
1 ACGGTTGCAATATATATAATGACCGCCTACAGAATATATAATGCCTATACC
856946 ACGGTTGCAATATATATAATGACCGCCTACAGAATATATAATGCCTATAC
1 ACGGTTGCAATATATATAATGACCGCCTACAGAATATATAATGCCTATAC
856996 TATTAGAATA
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 50 1.00
ACGTcount: A:0.38, C:0.21, G:0.14, T:0.28
Consensus pattern (51 bp):
ACGGTTGCAATATATATAATGACCGCCTACAGAATATATAATGCCTATACC
Left flanking sequence: Indices 856395 -- 856894
AGTTTGATCGACCACTGTAGGTCGTTGTAAAGAGGTGATAATTAGCCCGAAGTATGGGTCTAGAG
AAGAAAGTGACTTTCAATCATATGCAGCAGATTGAATATTCAAAATAGGCAGAACCCTTGAACGA
GGTCTACTCGACATATCAGTCACTCTATTAGCAGTCTTCTTTTTCTACTTGATAACAGAATGAAA
TTGTTGAATAAAAGAAGCCCGTCTTTCTTATCGAATTCCTACACCCTACCTTTCTATAGTGGAAC
ATAATAAGCTGATGATTAGCATGAATGATTGTGTCCTTACCGGGGGGATGTAATATCCCCATTAC
TTGAGCGCTTGAACGCATGGAATTCCTTCTATATATATGCACTTCAATTATCTCTTTTCACATAA
GGTGTTTCAGAATGATAAGCAATGGGCCTCCTTGCTCGAAAACGGCGCTTACGGATTTGAACCTG
GATATGGGCCTGGAATTCTATCTGGAACCCTGCCCGGGGAAGCCT
Right flanking sequence: Indices 856996 -- 857495
TATTAGAATATTCTAGTGTTTGCAGGGCAACTGGTGAAATGGGTGAAACCGCTACCGCCTATCCG
GCTGATGGGTAAACTAAGTCCACCGTATCTCTAATGGGATCTGGAATGGGTTCTGCAATCGATAC
TACCACCCTTGCTTCTGCTCCCATCTATGCCTTTGCTGGGCGAGGTGCTGGCTCTTTCACTCAAT
ATCGAACTGCCTCTCTTTGGTCCGTACCAGCTCTGGGTCTTGTATGGTCTAAGTATATTGTAGCC
TTTGTTCATAAGCACTATTACAAGCTCTTATATGAAACTTGCGACATAAGGGGCCAAGCTCTAAT
GCACGTAAAGTCAAGACTGGTGTCGGTGTCCCTACCTTACAGGTCGTGAAAGGGTAAAGCCGAGG
TAGAGTATCTGTCCGGATATGTATCTATCCTGTCCTGGGAAACCAGATCTTCTCTTTCCTGCGTT
TTGCAACTGAGTTAACATATGGATTGAAAACTCAATATCGATCCG
Found at i:858065 original size:133 final size:133
Alignment explanation
Indices: 857827--858093 Score: 534
Period size: 133 Copynumber: 2.0 Consensus size: 133
857817 TTGCCTCACT
857827 ACCCCTTATACCTTAGAGTAGTATAGTAGTAGTTTCCCATCCTTGCTTACCCATTGCCCTATATA
1 ACCCCTTATACCTTAGAGTAGTATAGTAGTAGTTTCCCATCCTTGCTTACCCATTGCCCTATATA
857892 TACATTCCAGCCTAGTTGCTTCTATTGACTAAGTCTTCCAGAGCATGGACCGGGATTGAAGCATG
66 TACATTCCAGCCTAGTTGCTTCTATTGACTAAGTCTTCCAGAGCATGGACCGGGATTGAAGCATG
857957 GAC
131 GAC
857960 ACCCCTTATACCTTAGAGTAGTATAGTAGTAGTTTCCCATCCTTGCTTACCCATTGCCCTATATA
1 ACCCCTTATACCTTAGAGTAGTATAGTAGTAGTTTCCCATCCTTGCTTACCCATTGCCCTATATA
858025 TACATTCCAGCCTAGTTGCTTCTATTGACTAAGTCTTCCAGAGCATGGACCGGGATTGAAGCATG
66 TACATTCCAGCCTAGTTGCTTCTATTGACTAAGTCTTCCAGAGCATGGACCGGGATTGAAGCATG
858090 GAC
131 GAC
858093 A
1 A
858094 GGGCCTTTAT
Statistics
Matches: 134, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
133 134 1.00
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.31
Consensus pattern (133 bp):
ACCCCTTATACCTTAGAGTAGTATAGTAGTAGTTTCCCATCCTTGCTTACCCATTGCCCTATATA
TACATTCCAGCCTAGTTGCTTCTATTGACTAAGTCTTCCAGAGCATGGACCGGGATTGAAGCATG
GAC
Left flanking sequence: Indices 857327 -- 857826
AAAGTCAAGACTGGTGTCGGTGTCCCTACCTTACAGGTCGTGAAAGGGTAAAGCCGAGGTAGAGT
ATCTGTCCGGATATGTATCTATCCTGTCCTGGGAAACCAGATCTTCTCTTTCCTGCGTTTTGCAA
CTGAGTTAACATATGGATTGAAAACTCAATATCGATCCGGAACCGGGGCAGTAGTTTTAGGTGCG
GACTCACCGTTTGTGTAGGCTATAGTAGTAAAGGCAGGGGGGCTACGACAGCAGAGGTAAAGGAA
CCACCAAAGATAGAGGTAGCAGCATCAATGCCAGCAGCAGGGACGGGTGACCAAGTTTCTCCTTA
AGCAGTTCCATAAGCATTTCACCGAGCAAAAACACGCGTTCGTTTACCCATATCCACTTTACCGA
GTCTCACTAGCAGCTGATCCGGAACCAGAACCAGGGAAAGAAGCAAAGGCATTAGCCAAGGCGGG
AACAGCAGATTCATAAGCAGATGGCTCACTACCCCTTGCCTCACT
Right flanking sequence: Indices 858094 -- 858593
GGGCCTTTATATCCCTTACTCGGGCAAGGAGGAGAATCGCTCTGAAAATCAATATAGTTTTCGTC
ATTTCTTATATACGTAATAACGAAATCTATCACACCCGGAAAGTTTCGGCGCAAACCCCCTAATA
ACTTCGCCGAAACTAACAATTTAGCATCGCCGAAAAGAAAAATTGATGAGTCACCAAAACTCAAA
ATTTCCCTCTCCACTCTCGAGCTACTTAGGTAATTATAGGATGCCTTCACTTGGGAGTACACAAA
TATGCGTGGTATGGATGAGACCCTAGTCTACCATAACCTGCCACTCAAACTTAATGCTAAACCCA
TAAAGTCTAAGCTGCATAGGCATAGGCCCGAGGTAAATGCCGTGGTATAAAAAGATATATGAAAA
CTATGAAAAGCTAAGTTCGTTCAATTAATCGATTACCCTGAGTGGCTAGTAAACATAGTTCCCAT
CATGAAGAAGAATGGCACAGTTTGAGTCTACATAAACTCCTCTAA
Found at i:863170 original size:61 final size:62
Alignment explanation
Indices: 863086--863214 Score: 251
Period size: 61 Copynumber: 2.1 Consensus size: 62
863076 AGGAACTAGT
863086 CTCGACCACCCTTTAGTTACTTATTTGAGAGGGGCCACCCAATAAGCATCAAGGAAGCA-GG
1 CTCGACCACCCTTTAGTTACTTATTTGAGAGGGGCCACCCAATAAGCATCAAGGAAGCATGG
863147 CTCGACCACCCTTTAGTTACTTATTTGAGAGGGGCCACCCAATAAGCATCAAGGAAGCATGG
1 CTCGACCACCCTTTAGTTACTTATTTGAGAGGGGCCACCCAATAAGCATCAAGGAAGCATGG
863209 CTCGAC
1 CTCGAC
863215 TAAAAGGAGA
Statistics
Matches: 67, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
61 59 0.88
62 8 0.12
ACGTcount: A:0.29, C:0.27, G:0.22, T:0.22
Consensus pattern (62 bp):
CTCGACCACCCTTTAGTTACTTATTTGAGAGGGGCCACCCAATAAGCATCAAGGAAGCATGG
Left flanking sequence: Indices 862586 -- 863085
GTTTCATCCTTACCCGTGGTTATGATGTTGAATATGAAAATAGCAGAGATTCATGAAAAAGTATC
GCGCTATCCACCAGTGAGTGGTATTATTGGACTGATCCTTCGGTGGGAAATGTTCTTCATCCCAG
ATAATGATCACATTCCATCATTACCAACCTGCATAAGTACAACCTCTCTGAGATATACAGTTCAT
GCTGGAGAGATACAGAGTTGGACCAATTCGGAAACATCGGGCAATTCACTTCATACCTACTATTC
CGTTCGGTTTTCGGTTTCTAGTCCTATTCCATCAGTAGCCATGATTGGGGCTACAGTACTGACTA
TGCATAGGACTACTAGGGTGAAGAGACAGGACGTATTCCGACAAAATGCTATTGATTCCAAGAGG
ACTATAATGAGGAGGACGACAGACCAACAAGCAGGCTGATCGCGGATACGGGGGCCAGATAAAGG
GAAGAACGGCTACGTTACCACATTGCGTGCGAGGAAGGAACTAGT
Right flanking sequence: Indices 863215 -- 863714
TAAAAGGAGAGGATGCCCCCGGCAGGGTGAGGTACGTTAAGTGACTCGACCTATGCTAGTTACTT
ATTTGAGAGCCCAATAAGTCAAATGAATACGTTAGTGACTCGACTGATAAGGACCCTTTAGGGGG
CTCGACTGATAAGGAGAGGAGAGGTACGTTAAGTGACTCGACCTATGCTAGTTACTTATTTGAGA
GCCCAATAAGTCAAATGAATACGTTAGTGACTCGACTGACAAGGACCCTTTAGGGGGCTCGACTG
ATAAGGAGAGGAGAGGTACGTTAGTGACTCGACCATAGGGAGAGGAACGAACGCTCGACTAATAA
GGACCTTTAGGTGCTCGACTGTTAAGGATGCGCAAGCATGCTCGACTGTTAACCCCCCAAACCAA
TAAGTAAACCCTAACCTTTAGGTGCTCGACCATAAGGGAGAGGAGAGGAGAGGGCTCTCAATTTA
AGGAGAGGATTCTTGACCAGCTTTCTTAGACTATTTGTACTACTA
Found at i:863319 original size:59 final size:60
Alignment explanation
Indices: 863247--863445 Score: 171
Period size: 59 Copynumber: 3.3 Consensus size: 60
863237 CAGGGTGAGG
863247 TACGTTAAGTGACTCGACCTATGCTAGTTACTTATTTGAGAGCCCAATAAGTCAAATGAA
1 TACGTTAAGTGACTCGACCTATGCTAGTTACTTATTTGAGAGCCCAATAAGTCAAATGAA
* * * * * * * * * *
863307 TACGTT-AGTGACTCGA-CTGAT--AAG-GACCCT-TTAGGGGGCTCGACTGATAAG-GAGAGGA
1 TACGTTAAGTGACTCGACCT-ATGCTAGTTA-CTTATTTGAGAGC-C--C-AATAAGTCAAATGA
863365 GA
60 -A
863367 GGTACGTTAAGTGACTCGACCTATGCTAGTTACTTATTTGAGAGCCCAATAAGTCAAATGAA
1 --TACGTTAAGTGACTCGACCTATGCTAGTTACTTATTTGAGAGCCCAATAAGTCAAATGAA
863429 TACGTT-AGTGACTCGAC
1 TACGTTAAGTGACTCGAC
863446 TGACAAGGAC
Statistics
Matches: 103, Mismatches: 20, Indels: 33
0.66 0.13 0.21
Matches are distributed among these distances:
56 7 0.07
57 5 0.05
58 2 0.02
59 28 0.27
60 18 0.17
62 12 0.12
63 17 0.17
64 2 0.02
65 5 0.05
66 7 0.07
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (60 bp):
TACGTTAAGTGACTCGACCTATGCTAGTTACTTATTTGAGAGCCCAATAAGTCAAATGAA
Left flanking sequence: Indices 862747 -- 863246
CATAAGTACAACCTCTCTGAGATATACAGTTCATGCTGGAGAGATACAGAGTTGGACCAATTCGG
AAACATCGGGCAATTCACTTCATACCTACTATTCCGTTCGGTTTTCGGTTTCTAGTCCTATTCCA
TCAGTAGCCATGATTGGGGCTACAGTACTGACTATGCATAGGACTACTAGGGTGAAGAGACAGGA
CGTATTCCGACAAAATGCTATTGATTCCAAGAGGACTATAATGAGGAGGACGACAGACCAACAAG
CAGGCTGATCGCGGATACGGGGGCCAGATAAAGGGAAGAACGGCTACGTTACCACATTGCGTGCG
AGGAAGGAACTAGTCTCGACCACCCTTTAGTTACTTATTTGAGAGGGGCCACCCAATAAGCATCA
AGGAAGCAGGCTCGACCACCCTTTAGTTACTTATTTGAGAGGGGCCACCCAATAAGCATCAAGGA
AGCATGGCTCGACTAAAAGGAGAGGATGCCCCCGGCAGGGTGAGG
Right flanking sequence: Indices 863446 -- 863945
TGACAAGGACCCTTTAGGGGGCTCGACTGATAAGGAGAGGAGAGGTACGTTAGTGACTCGACCAT
AGGGAGAGGAACGAACGCTCGACTAATAAGGACCTTTAGGTGCTCGACTGTTAAGGATGCGCAAG
CATGCTCGACTGTTAACCCCCCAAACCAATAAGTAAACCCTAACCTTTAGGTGCTCGACCATAAG
GGAGAGGAGAGGAGAGGGCTCTCAATTTAAGGAGAGGATTCTTGACCAGCTTTCTTAGACTATTT
GTACTACTATTATTCTTAACACTAGTACACCCATTATTTTCACTATTCACTTCTAACATACGAGG
ATGCTATCTACATCCTAGCTGCTGCTTTCTCTGCTTCTGAGCCTCTTACTCGATCTGCGGGTGGA
AGCTATGGGTAACTGGAAACGGAACTACTACCCATGCCTCTGGTGGTGGAACTGCTCGCTAGGTG
CTGCTTCCTCGGCCCTTGTTTATGGTGACTCGAATGCAACCTATG
Found at i:863460 original size:122 final size:122
Alignment explanation
Indices: 863243--863508 Score: 516
Period size: 122 Copynumber: 2.2 Consensus size: 122
863233 CCGGCAGGGT
863243 GAGGTACGTTAAGTGACTCGACCTATGCTAGTTACTTATTTGAGAGCCCAATAAGTCAAATGAAT
1 GAGGTACGTTAAGTGACTCGACCTATGCTAGTTACTTATTTGAGAGCCCAATAAGTCAAATGAAT
*
863308 ACGTTAGTGACTCGACTGATAAGGACCCTTTAGGGGGCTCGACTGATAAGGAGAGGA
66 ACGTTAGTGACTCGACTGACAAGGACCCTTTAGGGGGCTCGACTGATAAGGAGAGGA
863365 GAGGTACGTTAAGTGACTCGACCTATGCTAGTTACTTATTTGAGAGCCCAATAAGTCAAATGAAT
1 GAGGTACGTTAAGTGACTCGACCTATGCTAGTTACTTATTTGAGAGCCCAATAAGTCAAATGAAT
863430 ACGTTAGTGACTCGACTGACAAGGACCCTTTAGGGGGCTCGACTGATAAGGAGAGGA
66 ACGTTAGTGACTCGACTGACAAGGACCCTTTAGGGGGCTCGACTGATAAGGAGAGGA
863487 GAGGTACGTT-AGTGACTCGACC
1 GAGGTACGTTAAGTGACTCGACC
863509 ATAGGGAGAG
Statistics
Matches: 143, Mismatches: 1, Indels: 1
0.99 0.01 0.01
Matches are distributed among these distances:
121 12 0.08
122 131 0.92
ACGTcount: A:0.30, C:0.18, G:0.27, T:0.25
Consensus pattern (122 bp):
GAGGTACGTTAAGTGACTCGACCTATGCTAGTTACTTATTTGAGAGCCCAATAAGTCAAATGAAT
ACGTTAGTGACTCGACTGACAAGGACCCTTTAGGGGGCTCGACTGATAAGGAGAGGA
Left flanking sequence: Indices 862743 -- 863242
CCTGCATAAGTACAACCTCTCTGAGATATACAGTTCATGCTGGAGAGATACAGAGTTGGACCAAT
TCGGAAACATCGGGCAATTCACTTCATACCTACTATTCCGTTCGGTTTTCGGTTTCTAGTCCTAT
TCCATCAGTAGCCATGATTGGGGCTACAGTACTGACTATGCATAGGACTACTAGGGTGAAGAGAC
AGGACGTATTCCGACAAAATGCTATTGATTCCAAGAGGACTATAATGAGGAGGACGACAGACCAA
CAAGCAGGCTGATCGCGGATACGGGGGCCAGATAAAGGGAAGAACGGCTACGTTACCACATTGCG
TGCGAGGAAGGAACTAGTCTCGACCACCCTTTAGTTACTTATTTGAGAGGGGCCACCCAATAAGC
ATCAAGGAAGCAGGCTCGACCACCCTTTAGTTACTTATTTGAGAGGGGCCACCCAATAAGCATCA
AGGAAGCATGGCTCGACTAAAAGGAGAGGATGCCCCCGGCAGGGT
Right flanking sequence: Indices 863509 -- 864008
ATAGGGAGAGGAACGAACGCTCGACTAATAAGGACCTTTAGGTGCTCGACTGTTAAGGATGCGCA
AGCATGCTCGACTGTTAACCCCCCAAACCAATAAGTAAACCCTAACCTTTAGGTGCTCGACCATA
AGGGAGAGGAGAGGAGAGGGCTCTCAATTTAAGGAGAGGATTCTTGACCAGCTTTCTTAGACTAT
TTGTACTACTATTATTCTTAACACTAGTACACCCATTATTTTCACTATTCACTTCTAACATACGA
GGATGCTATCTACATCCTAGCTGCTGCTTTCTCTGCTTCTGAGCCTCTTACTCGATCTGCGGGTG
GAAGCTATGGGTAACTGGAAACGGAACTACTACCCATGCCTCTGGTGGTGGAACTGCTCGCTAGG
TGCTGCTTCCTCGGCCCTTGTTTATGGTGACTCGAATGCAACCTATGCCTCTGTGGGTGACCCCT
TATCAATAGACCGCAATGCGTTCAAAGTAAATCAAAGAAGGACGA
Found at i:865233 original size:21 final size:22
Alignment explanation
Indices: 865204--865245 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
865194 GTGGGAGTAA
*
865204 AGAAGAAAGCGGTGA-AGATAG
1 AGAAGAAAGCAGTGACAGATAG
*
865225 AGAATAAAGCAGTGACAGATA
1 AGAAGAAAGCAGTGACAGATA
865246 ATAAAGAATC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.50, C:0.07, G:0.31, T:0.12
Consensus pattern (22 bp):
AGAAGAAAGCAGTGACAGATAG
Left flanking sequence: Indices 864704 -- 865203
TTGTTTCTTCCTCTGCTTATGGTGGTGGATCGACTGCTCCTGGCACAAGGTAAACCGCTAATGGG
TCTCGATCTGGATATGGGTAAACTACTGTCTCTCCTGCACCTGCCTATGCTTCTGCTACCTATGC
TTCTGGCCCGCAGCTACCATTGAACCAATATATCTATCAGTTCAAGCAGTTGATCTACCGGCTAT
TGACTTCGTTAATCCTGAAGCGAAGGGAACAGATCCCATTTCATACAGAAGAGGGAGCCGGAGCA
CAGTGAACTAGGGTATACAGGGCAATAGTTCCATGAAGTGATATGGATTCGCCTGCGTTAAGTGC
TGTTACAGCATAGCTTATTTCTTTTAGCCCCGCCTTTTCAGGAGCGGGATAAAGCAGGCACTGAA
TTAATAAAGCGGTTCGCCCGGACCCAGAGCTAGCTTATTCTGTCGATGAACCAGAACCCGTTCAC
TTTAGTAGTTAGAGTATATCCCGTTCAATAGTGAAGTGGGAGTAA
Right flanking sequence: Indices 865246 -- 865745
ATAAAGAATCAGCATCTGGAATCTGGAAATAAGCATTATGGATATTCAATCAATCATTAAGTAGA
TAATAAATCCATTAAGCTATCTTCAGTAGTGACTTTCCCTCCCTGGATCCCATAGTTCCGTGCAT
CTCTCTGTCTTTTGGTTGATTCTGAAGAAGCGGTGTGCGATTTTAGCCCGCACTGGTATTCCCCC
CTGTCCGGTAGGGCCAGCTATGGGTGTTGCTTGTTTGCGGCACCATCAGCAACGTCTTTGGACCC
GGTGAGATAGTGGGATGAAGGTCGTCCACGTCCTATCCTTACCCCATACCCGAATTTTCACGCTC
ATCCTGCACCCGCATAACTTTATTCACGCTTCACACGCTCAACCTTATTCTCATTCACACACCAG
TAGCACCAATCTGTAGCCTCGATAAAGTAACATTCATCCAGATCGTCCATAAAATAGTAGCAATC
TTACTCGTAAGCATAAAACAAAAGCTGTAGTAAATACCTATGCAG
Found at i:867787 original size:12 final size:12
Alignment explanation
Indices: 867770--867829 Score: 60
Period size: 12 Copynumber: 5.5 Consensus size: 12
867760 ACTGGATCTG
867770 CTGGATATAGGT
1 CTGGATATAGGT
*
867782 CTGGATCT--G-
1 CTGGATATAGGT
867791 CTGGATATAGGT
1 CTGGATATAGGT
*
867803 CTGGATCT--G-
1 CTGGATATAGGT
867812 CTGGATATAGGT
1 CTGGATATAGGT
867824 CTGGAT
1 CTGGAT
867830 CACGCTTACT
Statistics
Matches: 38, Mismatches: 4, Indels: 12
0.70 0.07 0.22
Matches are distributed among these distances:
9 14 0.37
10 2 0.05
11 2 0.05
12 20 0.53
ACGTcount: A:0.20, C:0.13, G:0.33, T:0.33
Consensus pattern (12 bp):
CTGGATATAGGT
Left flanking sequence: Indices 867270 -- 867769
CTGCTCTCTCAGGGTCAAAAGGTGGACAAAGTACTACGTATTATGCTAGTTTTCGAAATGTCATT
AGTACTGGAGCCGAAACGACTGATGCTCGGTCAACTACTCCTCGATCCATAAATGCATATGAAAC
CCTAACTAGTGGGGCTTGAACTATGGACTCTACTATTGGATGATCTGGATCCTGGCGAGGTGCTG
TCTATTCTACTGTTAGCTTCGAACCCGCGACTGGTGGTTATGGATCCACTGAATCAATGGTTGCT
TCTGACTAAACTCGGTCAACTGCTGGCTATGCTCTCTGTGCTACCTTTGCTTCTGTCTCCGTCTC
TGTAACCTTCTGTAACCTCTGCTGGGCCCTGCTCCTGCTTATGTAACTTAGTAAGCTGCATCTCG
AACTATTGCTGGTGGAACTACTCGCTTTGGTTCTGCACCTGACAAAATGGTTCCCCCCCGGAGCT
ACTGCTGCTGGAGATACTTTTAGTCTACTGCCGGTACTGGATCTG
Right flanking sequence: Indices 867830 -- 868329
CACGCTTACTAGCAGCAGGCTCTGAATCTCGCTTACAAAAAGCATAAACTGGCGGATCTCGTTCT
TTACAATCATAATATCGATCTCGATCACAAGCATCATAAGTAACTGGGTCCCACTCATCATAAGG
ACCTTCCTATCGAGAATCTAAGTCTGGATCTTGATCTTGTAATGCCTCTGGCTTTGGTGCTGGTG
CTTTCACTGGATCAGCTACTTTACCGACTGCTTCTTAATCTACTGGACCAACCGCTGAACCATTT
CAAGGGGCTACTTCTGCACCACGACTGCTGCTACTGATGCTATTGGTGGATAAGTGGGATCTACT
GCCGCTAGCTATGGGTATGGCCCTGGAACTACTGACTCTCGTACTGGTGCTGCTTATATAGATAG
CTATGATGCTCCTATCTCTGCTACAACTGCTGGCTTTGGATCTTACTCTTGATCTCGCTCACGAA
CTGGATCTCGTGTTAACGAACCTGGCTTTGCTGCTGCCTTTCCCT
Found at i:867787 original size:21 final size:21
Alignment explanation
Indices: 867761--867830 Score: 140
Period size: 21 Copynumber: 3.3 Consensus size: 21
867751 ACTGCCGGTA
867761 CTGGATCTGCTGGATATAGGT
1 CTGGATCTGCTGGATATAGGT
867782 CTGGATCTGCTGGATATAGGT
1 CTGGATCTGCTGGATATAGGT
867803 CTGGATCTGCTGGATATAGGT
1 CTGGATCTGCTGGATATAGGT
867824 CTGGATC
1 CTGGATC
867831 ACGCTTACTA
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 49 1.00
ACGTcount: A:0.19, C:0.16, G:0.33, T:0.33
Consensus pattern (21 bp):
CTGGATCTGCTGGATATAGGT
Left flanking sequence: Indices 867261 -- 867760
GCTTTAGTGCTGCTCTCTCAGGGTCAAAAGGTGGACAAAGTACTACGTATTATGCTAGTTTTCGA
AATGTCATTAGTACTGGAGCCGAAACGACTGATGCTCGGTCAACTACTCCTCGATCCATAAATGC
ATATGAAACCCTAACTAGTGGGGCTTGAACTATGGACTCTACTATTGGATGATCTGGATCCTGGC
GAGGTGCTGTCTATTCTACTGTTAGCTTCGAACCCGCGACTGGTGGTTATGGATCCACTGAATCA
ATGGTTGCTTCTGACTAAACTCGGTCAACTGCTGGCTATGCTCTCTGTGCTACCTTTGCTTCTGT
CTCCGTCTCTGTAACCTTCTGTAACCTCTGCTGGGCCCTGCTCCTGCTTATGTAACTTAGTAAGC
TGCATCTCGAACTATTGCTGGTGGAACTACTCGCTTTGGTTCTGCACCTGACAAAATGGTTCCCC
CCCGGAGCTACTGCTGCTGGAGATACTTTTAGTCTACTGCCGGTA
Right flanking sequence: Indices 867831 -- 868330
ACGCTTACTAGCAGCAGGCTCTGAATCTCGCTTACAAAAAGCATAAACTGGCGGATCTCGTTCTT
TACAATCATAATATCGATCTCGATCACAAGCATCATAAGTAACTGGGTCCCACTCATCATAAGGA
CCTTCCTATCGAGAATCTAAGTCTGGATCTTGATCTTGTAATGCCTCTGGCTTTGGTGCTGGTGC
TTTCACTGGATCAGCTACTTTACCGACTGCTTCTTAATCTACTGGACCAACCGCTGAACCATTTC
AAGGGGCTACTTCTGCACCACGACTGCTGCTACTGATGCTATTGGTGGATAAGTGGGATCTACTG
CCGCTAGCTATGGGTATGGCCCTGGAACTACTGACTCTCGTACTGGTGCTGCTTATATAGATAGC
TATGATGCTCCTATCTCTGCTACAACTGCTGGCTTTGGATCTTACTCTTGATCTCGCTCACGAAC
TGGATCTCGTGTTAACGAACCTGGCTTTGCTGCTGCCTTTCCCTC
Found at i:869802 original size:20 final size:20
Alignment explanation
Indices: 869779--869816 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
869769 CAGCCACAAT
*
869779 ATCTCCTAGCCAGCCGAAGG
1 ATCTCCCAGCCAGCCGAAGG
869799 ATCTCCCAGCCAGCCGAA
1 ATCTCCCAGCCAGCCGAA
869817 CCCCGATCTG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.26, C:0.39, G:0.21, T:0.13
Consensus pattern (20 bp):
ATCTCCCAGCCAGCCGAAGG
Left flanking sequence: Indices 869279 -- 869778
ATAGGTAGCTCCGGTGGTGGGTCTAAAGTGAAATATGTTTGGTTAGGTGCGTGTCTCTTTCGGTC
CGTGGTTGGGTCTCGCTCGGGGTGGTTCGATCGGTCATTCCATCCCTGCAAGTGGCTAGTTCGTC
CCGCTTCGCACCTCGTCCCCGTTAGGGCATGAAATCTGTTGGCAGTGAATAACTCTCAAAGGCAT
ATCTGTCACAATTCGTTGCCCCGTCCGCTGGGCACGACACCCCGCCAGGTCTCTATCTGTTGGCT
TTCAATCGTCAAAGCATCTCCGTCAAAGGTAGGTAGGACCACTCTTTCTCTTCTTGGTTAGTCCT
GGCTATTGGCGGTAAGCATAGGTAGGGTTGGTAGGCACGCATAAGTAGGCAGGTAAAGGTGGGTC
TAAAGGCTAATAAGGGTTTATAGGAACGAGAGGTAGGAAGGTAGGTGTGCGTGATCGGGTCATAG
GCGAGCTGCCCGTACTTAGCTCATAAGTACTTAGCCAGCCACAAT
Right flanking sequence: Indices 869817 -- 870316
CCCCGATCTGGTAGGCGTGGTAAAGAATCTTTTCTTCCCCGATCTATACAACTCCGTCCTCATTT
CCTACCTTACTAGCGGTGGATAATATGATTCGGGAATAGCTATGCCGATGTACCTTACAGGTAGA
GGCAAAGACTAAACTCGACCAAAGACAGATCTCTAAAGGACTCGACAAAGTATGTAAGCGGGAAA
AGTCAATCTCTAGCAAATCAAGGACTAATAACCATAGAGAGCTTCATGGAAAGAGGGACTGCTTG
GCTACGGGTGGCAAGAGATTCGTTCTTTACTAAACACTTCGGCAGGTATAGGGAGACAGCCAGCC
TACCAACGCTGGGATTTGGATGCTGCCCACCCAATAAGCATCAAGGAAGCATGGCTCAACTAAAA
GGCCGCCATCGTGCGTTAGCACACTCGACTGTCAAGGAGAGGGATACAGCCGCGGCTCACCTGGG
TAGCGGGAAGGGGGAATAGCGGTGCGGTAAGGGTAGCGGGCGGTA
Found at i:870316 original size:16 final size:17
Alignment explanation
Indices: 870288--870319 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
870278 GAAGGGGGAA
870288 TAGCGGTGCGGTAAGGG
1 TAGCGGTGCGGTAAGGG
870305 TAGCGG-GCGGTAAGG
1 TAGCGGTGCGGTAAGG
870320 ATCTATGGCA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.19, C:0.12, G:0.53, T:0.16
Consensus pattern (17 bp):
TAGCGGTGCGGTAAGGG
Left flanking sequence: Indices 869788 -- 870287
CCAGCCGAAGGATCTCCCAGCCAGCCGAACCCCGATCTGGTAGGCGTGGTAAAGAATCTTTTCTT
CCCCGATCTATACAACTCCGTCCTCATTTCCTACCTTACTAGCGGTGGATAATATGATTCGGGAA
TAGCTATGCCGATGTACCTTACAGGTAGAGGCAAAGACTAAACTCGACCAAAGACAGATCTCTAA
AGGACTCGACAAAGTATGTAAGCGGGAAAAGTCAATCTCTAGCAAATCAAGGACTAATAACCATA
GAGAGCTTCATGGAAAGAGGGACTGCTTGGCTACGGGTGGCAAGAGATTCGTTCTTTACTAAACA
CTTCGGCAGGTATAGGGAGACAGCCAGCCTACCAACGCTGGGATTTGGATGCTGCCCACCCAATA
AGCATCAAGGAAGCATGGCTCAACTAAAAGGCCGCCATCGTGCGTTAGCACACTCGACTGTCAAG
GAGAGGGATACAGCCGCGGCTCACCTGGGTAGCGGGAAGGGGGAA
Right flanking sequence: Indices 870320 -- 870819
ATCTATGGCACAGTGCGGTAAGGGAAGCGGGCGGTAAGGATCTATGGCACAGTGCGGTAAGGGAA
GCGGGAAGGAAGGAAAGCGGTAAGGAGAAGGGTAAGGACAGCGGTAAGGACCTATGGCACAGTGC
GGTAAGGGGAGAAGGAAGGAATGAGAGAGAGAAAGAGGGGTTGGCTATTTTAGCTCAACGCCAAT
CAACCAATAAGGAGCTTATATCATCGGAGGGAGTTTCTATCATCGTAGGGAGCGTATATCTATTA
TTAGAATTGATTCTTATTATTATATACGTATTTATGTTTATGCCTAACTTGATGCTTATTGGGTG
GTGGGCAAATGTTGGGAGAGTATTAGAAAGATGAAACAACACTGGGAAATGTACCATTGTCTATT
TGGAGGGGACTGAAATTCTAGAATGTATCTCTTTTAGAAGAAAGGGGGAGTAAGGTCCCGGAGGG
GCTTGCGCTTCCTAGTGCAAGGAACGTAGTGCTTGCTTGACGTTA
Found at i:870341 original size:23 final size:23
Alignment explanation
Indices: 870311--870381 Score: 68
Period size: 23 Copynumber: 3.4 Consensus size: 23
870301 AGGGTAGCGG
870311 GCGGTAAGGATCTATGGCACAGT
1 GCGGTAAGGATCTATGGCACAGT
*
870334 GCGGTAAGGGA---A--G--C-GG
1 GCGGTAA-GGATCTATGGCACAGT
870350 GCGGTAAGGATCTATGGCACAGT
1 GCGGTAAGGATCTATGGCACAGT
870373 GCGGTAAGG
1 GCGGTAAGG
870382 GAAGCGGGAA
Statistics
Matches: 37, Mismatches: 2, Indels: 18
0.65 0.04 0.32
Matches are distributed among these distances:
15 3 0.08
16 8 0.22
17 1 0.03
18 1 0.03
19 1 0.03
20 1 0.03
21 1 0.03
22 1 0.03
23 17 0.46
24 3 0.08
ACGTcount: A:0.25, C:0.15, G:0.42, T:0.17
Consensus pattern (23 bp):
GCGGTAAGGATCTATGGCACAGT
Left flanking sequence: Indices 869811 -- 870310
GCCGAACCCCGATCTGGTAGGCGTGGTAAAGAATCTTTTCTTCCCCGATCTATACAACTCCGTCC
TCATTTCCTACCTTACTAGCGGTGGATAATATGATTCGGGAATAGCTATGCCGATGTACCTTACA
GGTAGAGGCAAAGACTAAACTCGACCAAAGACAGATCTCTAAAGGACTCGACAAAGTATGTAAGC
GGGAAAAGTCAATCTCTAGCAAATCAAGGACTAATAACCATAGAGAGCTTCATGGAAAGAGGGAC
TGCTTGGCTACGGGTGGCAAGAGATTCGTTCTTTACTAAACACTTCGGCAGGTATAGGGAGACAG
CCAGCCTACCAACGCTGGGATTTGGATGCTGCCCACCCAATAAGCATCAAGGAAGCATGGCTCAA
CTAAAAGGCCGCCATCGTGCGTTAGCACACTCGACTGTCAAGGAGAGGGATACAGCCGCGGCTCA
CCTGGGTAGCGGGAAGGGGGAATAGCGGTGCGGTAAGGGTAGCGG
Right flanking sequence: Indices 870382 -- 870881
GAAGCGGGAAGGAAGGAAAGCGGTAAGGAGAAGGGTAAGGACAGCGGTAAGGACCTATGGCACAG
TGCGGTAAGGGGAGAAGGAAGGAATGAGAGAGAGAAAGAGGGGTTGGCTATTTTAGCTCAACGCC
AATCAACCAATAAGGAGCTTATATCATCGGAGGGAGTTTCTATCATCGTAGGGAGCGTATATCTA
TTATTAGAATTGATTCTTATTATTATATACGTATTTATGTTTATGCCTAACTTGATGCTTATTGG
GTGGTGGGCAAATGTTGGGAGAGTATTAGAAAGATGAAACAACACTGGGAAATGTACCATTGTCT
ATTTGGAGGGGACTGAAATTCTAGAATGTATCTCTTTTAGAAGAAAGGGGGAGTAAGGTCCCGGA
GGGGCTTGCGCTTCCTAGTGCAAGGAACGTAGTGCTTGCTTGACGTTAGGAAAGCAAGGTGCGAA
GCCGCCAGAGAAGAAATAGGAAGGGCAAGGTCCCGGAGGGGCTTG
Found at i:870398 original size:39 final size:39
Alignment explanation
Indices: 870293--870389 Score: 185
Period size: 39 Copynumber: 2.5 Consensus size: 39
870283 GGGAATAGCG
*
870293 GTGCGGTAAGGGTAGCGGGCGGTAAGGATCTATGGCACA
1 GTGCGGTAAGGGAAGCGGGCGGTAAGGATCTATGGCACA
870332 GTGCGGTAAGGGAAGCGGGCGGTAAGGATCTATGGCACA
1 GTGCGGTAAGGGAAGCGGGCGGTAAGGATCTATGGCACA
870371 GTGCGGTAAGGGAAGCGGG
1 GTGCGGTAAGGGAAGCGGG
870390 AAGGAAGGAA
Statistics
Matches: 57, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 57 1.00
ACGTcount: A:0.24, C:0.14, G:0.46, T:0.15
Consensus pattern (39 bp):
GTGCGGTAAGGGAAGCGGGCGGTAAGGATCTATGGCACA
Left flanking sequence: Indices 869793 -- 870292
CGAAGGATCTCCCAGCCAGCCGAACCCCGATCTGGTAGGCGTGGTAAAGAATCTTTTCTTCCCCG
ATCTATACAACTCCGTCCTCATTTCCTACCTTACTAGCGGTGGATAATATGATTCGGGAATAGCT
ATGCCGATGTACCTTACAGGTAGAGGCAAAGACTAAACTCGACCAAAGACAGATCTCTAAAGGAC
TCGACAAAGTATGTAAGCGGGAAAAGTCAATCTCTAGCAAATCAAGGACTAATAACCATAGAGAG
CTTCATGGAAAGAGGGACTGCTTGGCTACGGGTGGCAAGAGATTCGTTCTTTACTAAACACTTCG
GCAGGTATAGGGAGACAGCCAGCCTACCAACGCTGGGATTTGGATGCTGCCCACCCAATAAGCAT
CAAGGAAGCATGGCTCAACTAAAAGGCCGCCATCGTGCGTTAGCACACTCGACTGTCAAGGAGAG
GGATACAGCCGCGGCTCACCTGGGTAGCGGGAAGGGGGAATAGCG
Right flanking sequence: Indices 870390 -- 870889
AAGGAAGGAAAGCGGTAAGGAGAAGGGTAAGGACAGCGGTAAGGACCTATGGCACAGTGCGGTAA
GGGGAGAAGGAAGGAATGAGAGAGAGAAAGAGGGGTTGGCTATTTTAGCTCAACGCCAATCAACC
AATAAGGAGCTTATATCATCGGAGGGAGTTTCTATCATCGTAGGGAGCGTATATCTATTATTAGA
ATTGATTCTTATTATTATATACGTATTTATGTTTATGCCTAACTTGATGCTTATTGGGTGGTGGG
CAAATGTTGGGAGAGTATTAGAAAGATGAAACAACACTGGGAAATGTACCATTGTCTATTTGGAG
GGGACTGAAATTCTAGAATGTATCTCTTTTAGAAGAAAGGGGGAGTAAGGTCCCGGAGGGGCTTG
CGCTTCCTAGTGCAAGGAACGTAGTGCTTGCTTGACGTTAGGAAAGCAAGGTGCGAAGCCGCCAG
AGAAGAAATAGGAAGGGCAAGGTCCCGGAGGGGCTTGCGCTTCCT
Found at i:870435 original size:12 final size:12
Alignment explanation
Indices: 870394--870434 Score: 57
Period size: 12 Copynumber: 3.4 Consensus size: 12
870384 AGCGGGAAGG
870394 AAGGAAAGCGGT
1 AAGGAAAGCGGT
870406 AAGGAGAAG-GGT
1 AAGGA-AAGCGGT
*
870418 AAGGACAGCGGT
1 AAGGAAAGCGGT
870430 AAGGA
1 AAGGA
870435 CCTATGGCAC
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
11 2 0.08
12 21 0.81
13 3 0.12
ACGTcount: A:0.41, C:0.07, G:0.44, T:0.07
Consensus pattern (12 bp):
AAGGAAAGCGGT
Left flanking sequence: Indices 869894 -- 870393
GCGGTGGATAATATGATTCGGGAATAGCTATGCCGATGTACCTTACAGGTAGAGGCAAAGACTAA
ACTCGACCAAAGACAGATCTCTAAAGGACTCGACAAAGTATGTAAGCGGGAAAAGTCAATCTCTA
GCAAATCAAGGACTAATAACCATAGAGAGCTTCATGGAAAGAGGGACTGCTTGGCTACGGGTGGC
AAGAGATTCGTTCTTTACTAAACACTTCGGCAGGTATAGGGAGACAGCCAGCCTACCAACGCTGG
GATTTGGATGCTGCCCACCCAATAAGCATCAAGGAAGCATGGCTCAACTAAAAGGCCGCCATCGT
GCGTTAGCACACTCGACTGTCAAGGAGAGGGATACAGCCGCGGCTCACCTGGGTAGCGGGAAGGG
GGAATAGCGGTGCGGTAAGGGTAGCGGGCGGTAAGGATCTATGGCACAGTGCGGTAAGGGAAGCG
GGCGGTAAGGATCTATGGCACAGTGCGGTAAGGGAAGCGGGAAGG
Right flanking sequence: Indices 870435 -- 870934
CCTATGGCACAGTGCGGTAAGGGGAGAAGGAAGGAATGAGAGAGAGAAAGAGGGGTTGGCTATTT
TAGCTCAACGCCAATCAACCAATAAGGAGCTTATATCATCGGAGGGAGTTTCTATCATCGTAGGG
AGCGTATATCTATTATTAGAATTGATTCTTATTATTATATACGTATTTATGTTTATGCCTAACTT
GATGCTTATTGGGTGGTGGGCAAATGTTGGGAGAGTATTAGAAAGATGAAACAACACTGGGAAAT
GTACCATTGTCTATTTGGAGGGGACTGAAATTCTAGAATGTATCTCTTTTAGAAGAAAGGGGGAG
TAAGGTCCCGGAGGGGCTTGCGCTTCCTAGTGCAAGGAACGTAGTGCTTGCTTGACGTTAGGAAA
GCAAGGTGCGAAGCCGCCAGAGAAGAAATAGGAAGGGCAAGGTCCCGGAGGGGCTTGCGCTTCCT
AGTGCAAGGTAATTGATTGCTTGTCCGCACCGGGCAAGGACCCGG
Found at i:870574 original size:19 final size:19
Alignment explanation
Indices: 870525--870574 Score: 64
Period size: 19 Copynumber: 2.6 Consensus size: 19
870515 CAACCAATAA
870525 GGAGCTTATATCATCGGAG
1 GGAGCTTATATCATCGGAG
* * *
870544 GGAGTTTCTATCATCGTAG
1 GGAGCTTATATCATCGGAG
*
870563 GGAGCGTATATC
1 GGAGCTTATATC
870575 TATTATTAGA
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.24, C:0.16, G:0.30, T:0.30
Consensus pattern (19 bp):
GGAGCTTATATCATCGGAG
Left flanking sequence: Indices 870025 -- 870524
CAAATCAAGGACTAATAACCATAGAGAGCTTCATGGAAAGAGGGACTGCTTGGCTACGGGTGGCA
AGAGATTCGTTCTTTACTAAACACTTCGGCAGGTATAGGGAGACAGCCAGCCTACCAACGCTGGG
ATTTGGATGCTGCCCACCCAATAAGCATCAAGGAAGCATGGCTCAACTAAAAGGCCGCCATCGTG
CGTTAGCACACTCGACTGTCAAGGAGAGGGATACAGCCGCGGCTCACCTGGGTAGCGGGAAGGGG
GAATAGCGGTGCGGTAAGGGTAGCGGGCGGTAAGGATCTATGGCACAGTGCGGTAAGGGAAGCGG
GCGGTAAGGATCTATGGCACAGTGCGGTAAGGGAAGCGGGAAGGAAGGAAAGCGGTAAGGAGAAG
GGTAAGGACAGCGGTAAGGACCTATGGCACAGTGCGGTAAGGGGAGAAGGAAGGAATGAGAGAGA
GAAAGAGGGGTTGGCTATTTTAGCTCAACGCCAATCAACCAATAA
Right flanking sequence: Indices 870575 -- 871074
TATTATTAGAATTGATTCTTATTATTATATACGTATTTATGTTTATGCCTAACTTGATGCTTATT
GGGTGGTGGGCAAATGTTGGGAGAGTATTAGAAAGATGAAACAACACTGGGAAATGTACCATTGT
CTATTTGGAGGGGACTGAAATTCTAGAATGTATCTCTTTTAGAAGAAAGGGGGAGTAAGGTCCCG
GAGGGGCTTGCGCTTCCTAGTGCAAGGAACGTAGTGCTTGCTTGACGTTAGGAAAGCAAGGTGCG
AAGCCGCCAGAGAAGAAATAGGAAGGGCAAGGTCCCGGAGGGGCTTGCGCTTCCTAGTGCAAGGT
AATTGATTGCTTGTCCGCACCGGGCAAGGACCCGGAGGGGCTTGCGCTTCCTAGTGCAAGGAACG
TAGTGCTTGCTTGACGTTAGGAAAGCAAGGACCCGACAGGGGGCTCGACTGATAAGGAGAGGAGT
TTGCTTCGACCAAGGAAAGAAAGGAATGGTACGCAAGATCCCAAA
Found at i:872537 original size:27 final size:27
Alignment explanation
Indices: 872455--872537 Score: 69
Period size: 27 Copynumber: 3.0 Consensus size: 27
872445 CCAATAAGCA
872455 GGCTCGACTGATAAGGAGAGGACCG-GAGG
1 GGCTCGACTGATAAGGAGAGGA--GAG-GG
* ******
872484 GGCTCGACTGTTAAGGACCCTTTAGGG
1 GGCTCGACTGATAAGGAGAGGAGAGGG
872511 GGCTCGACTGATAAGGAGAGGAGAGGG
1 GGCTCGACTGATAAGGAGAGGAGAGGG
872538 AGAATGTCCA
Statistics
Matches: 39, Mismatches: 14, Indels: 4
0.68 0.25 0.07
Matches are distributed among these distances:
27 22 0.56
28 1 0.03
29 16 0.41
ACGTcount: A:0.25, C:0.17, G:0.42, T:0.16
Consensus pattern (27 bp):
GGCTCGACTGATAAGGAGAGGAGAGGG
Left flanking sequence: Indices 871955 -- 872454
ATCTATAACTGGTGGCTATGGATCTGCGACTGGATTTGCATATGGATCCGTAACTAGCTTTGCCA
CTCGGTCTACCGGATCCAGGACTGGATATGGACTCGAGCGAAGGTCTAAGTGGATATTTGATCTA
CACTGATGCGGTGGGCCGCTGCGGGGTAGGGTTAGCACATTTACTGCTTATGGAACTATGGATAT
TTCCAGCTAATATAGTACTCAACAGGATCGTCGGTAGAAGGAGTCCCAGTCATTGGTCTGCTAGT
GTAGCACGGATCCGTACCCTTCTCCATGTAAAAATGAAGCACTGGTAAAGAGCCCGTCCCAATAA
ACACATAGACCATACATACGTTCCGCCCGGAAATGAATGACCTTAAGAATCTAAGGTATCTGGTC
TCTCTCGTGCTTTCTATTGGGTCTTCTAGCCTTTACATAATGACTTCTTTCGGTTGTGGTGCCGG
CAGCAGGCTCTCGAAATGGCAGGCTCGACCACCACCCAATAAGCA
Right flanking sequence: Indices 872538 -- 873037
AGAATGTCCAAAACCTCCGCCAAGCTAAAACGGCCAAATTAGTAGGGTTTTAACGCTCGACCAGG
GGGGAGAGGGAAAGATGTGAAAACCTCCGCCAAAGCATATATTCTCTATGTCATTATGCATGAAT
TATAAGGGAGAGGAACTTTAGTTGCTCGACCATAAGCCCACCCAATAAGCAGGCTCGACCGCTAG
CTAGTTACTTATTTGAGAGGGGCACCCAATTCATTGGCTGCCGTAATGACATATATAATGAGTGA
TTTCCTAGCTAGAGAAGAAAGAATGGTCGAGCGGCTCCTTGCTTCGGGCGTACAAGACTCGATCT
ATCTCTCTTTAGCCAGCCTATGTTTTCCAGAGGCATGCATCGAGAGCCCCGTGGAATATCGTCTG
AAAGAATGCGTAAGCAGGCTCGACTGATAAGGATGCGCAAGCAGGCTCGACTGTTAAGGACCCTT
TAGGGGGCTCGACTGATAAGGAGAGGAGAGGACCTTTAGGTGCTC
Found at i:872963 original size:27 final size:27
Alignment explanation
Indices: 872925--873014 Score: 92
Period size: 27 Copynumber: 3.4 Consensus size: 27
872915 GGAATATCGT
*
872925 CTGA-AAGAATGCGTAAGCAGGCTCGA
1 CTGATAAGGATGCGTAAGCAGGCTCGA
*
872951 CTGATAAGGATGCGCAAGCAGGCTCGA
1 CTGATAAGGATGCGTAAGCAGGCTCGA
* ** * * **
872978 CTGTTAAGGACCCTTTAGGGGGCTCGA
1 CTGATAAGGATGCGTAAGCAGGCTCGA
873005 CTGATAAGGA
1 CTGATAAGGA
873015 GAGGAGAGGA
Statistics
Matches: 52, Mismatches: 11, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
26 4 0.08
27 48 0.92
ACGTcount: A:0.29, C:0.20, G:0.32, T:0.19
Consensus pattern (27 bp):
CTGATAAGGATGCGTAAGCAGGCTCGA
Left flanking sequence: Indices 872425 -- 872924
ATGGCAGGCTCGACCACCACCCAATAAGCAGGCTCGACTGATAAGGAGAGGACCGGAGGGGCTCG
ACTGTTAAGGACCCTTTAGGGGGCTCGACTGATAAGGAGAGGAGAGGGAGAATGTCCAAAACCTC
CGCCAAGCTAAAACGGCCAAATTAGTAGGGTTTTAACGCTCGACCAGGGGGGAGAGGGAAAGATG
TGAAAACCTCCGCCAAAGCATATATTCTCTATGTCATTATGCATGAATTATAAGGGAGAGGAACT
TTAGTTGCTCGACCATAAGCCCACCCAATAAGCAGGCTCGACCGCTAGCTAGTTACTTATTTGAG
AGGGGCACCCAATTCATTGGCTGCCGTAATGACATATATAATGAGTGATTTCCTAGCTAGAGAAG
AAAGAATGGTCGAGCGGCTCCTTGCTTCGGGCGTACAAGACTCGATCTATCTCTCTTTAGCCAGC
CTATGTTTTCCAGAGGCATGCATCGAGAGCCCCGTGGAATATCGT
Right flanking sequence: Indices 873015 -- 873514
GAGGAGAGGACCTTTAGGTGCTCGACCATAAGGACCTTTAGGTGCTCGACTGATAAGGACCCTTT
AGGGGGCTCGACTGATAAGGACCTTTAGGTGCTCGACCCTAAGGACCTTTAGGTGCTCGACTGTT
AAGGAGAGGGAGAGGAGAGGAGAGGATGCGTAAGCAGGCTCGACTGTGAAACCCCCCAACCCAAT
AAGTAAACCCTAACCTTTAGGTGCTCGACTGTTAAGGAGAGGGAGAGGAGCACGCTCGACCACCC
AATAAGCATCAAGGAAGGCAGGGCTCGACTGTTAAGGAGAGGATGCGGAGCACGCTCGACCAACG
CCCCCCACCCAATAAGCATCAAGGGTTTTGATGCGTAATGACATATATAATGAAACGGCATCTCC
ATGAGCATGAAGGAAGGTACAGATCCGTGCAGCTGTTCTCTCTTCCAGGAAGAGGTATGGAGAAT
GAAATGGAAGGGTACAAAATGAAAGGTCCGGAGGGCTTGCGCTTC
Found at i:873053 original size:24 final size:25
Alignment explanation
Indices: 873021--873141 Score: 174
Period size: 24 Copynumber: 4.8 Consensus size: 25
873011 AGGAGAGGAG
873021 AGGACCTTTAGGTGCTCGAC-CATA
1 AGGACCTTTAGGTGCTCGACTCATA
*
873045 AGGACCTTTAGGTGCTCGACTGATA
1 AGGACCTTTAGGTGCTCGACTCATA
* *
873070 AGGACCCTTTAGGGGGCTCGACTGATA
1 AGGA-CCTTTA-GGTGCTCGACTCATA
*
873097 AGGACCTTTAGGTGCTCGAC-CCTA
1 AGGACCTTTAGGTGCTCGACTCATA
873121 AGGACCTTTAGGTGCTCGACT
1 AGGACCTTTAGGTGCTCGACT
873142 GTTAAGGAGA
Statistics
Matches: 88, Mismatches: 5, Indels: 7
0.88 0.05 0.07
Matches are distributed among these distances:
24 42 0.48
25 16 0.18
26 12 0.14
27 18 0.20
ACGTcount: A:0.22, C:0.24, G:0.28, T:0.26
Consensus pattern (25 bp):
AGGACCTTTAGGTGCTCGACTCATA
Left flanking sequence: Indices 872521 -- 873020
ATAAGGAGAGGAGAGGGAGAATGTCCAAAACCTCCGCCAAGCTAAAACGGCCAAATTAGTAGGGT
TTTAACGCTCGACCAGGGGGGAGAGGGAAAGATGTGAAAACCTCCGCCAAAGCATATATTCTCTA
TGTCATTATGCATGAATTATAAGGGAGAGGAACTTTAGTTGCTCGACCATAAGCCCACCCAATAA
GCAGGCTCGACCGCTAGCTAGTTACTTATTTGAGAGGGGCACCCAATTCATTGGCTGCCGTAATG
ACATATATAATGAGTGATTTCCTAGCTAGAGAAGAAAGAATGGTCGAGCGGCTCCTTGCTTCGGG
CGTACAAGACTCGATCTATCTCTCTTTAGCCAGCCTATGTTTTCCAGAGGCATGCATCGAGAGCC
CCGTGGAATATCGTCTGAAAGAATGCGTAAGCAGGCTCGACTGATAAGGATGCGCAAGCAGGCTC
GACTGTTAAGGACCCTTTAGGGGGCTCGACTGATAAGGAGAGGAG
Right flanking sequence: Indices 873142 -- 873641
GTTAAGGAGAGGGAGAGGAGAGGAGAGGATGCGTAAGCAGGCTCGACTGTGAAACCCCCCAACCC
AATAAGTAAACCCTAACCTTTAGGTGCTCGACTGTTAAGGAGAGGGAGAGGAGCACGCTCGACCA
CCCAATAAGCATCAAGGAAGGCAGGGCTCGACTGTTAAGGAGAGGATGCGGAGCACGCTCGACCA
ACGCCCCCCACCCAATAAGCATCAAGGGTTTTGATGCGTAATGACATATATAATGAAACGGCATC
TCCATGAGCATGAAGGAAGGTACAGATCCGTGCAGCTGTTCTCTCTTCCAGGAAGAGGTATGGAG
AATGAAATGGAAGGGTACAAAATGAAAGGTCCGGAGGGCTTGCGCTTCTGAGGGCAAGGAGAAAT
ACGTCGAACGAAGTGGGCAGTTAGCAGCGGATTTCTCAATACCAAGAAATCATGAAGAGTACCAT
CCCTCAGAACGGAAATAGCTTTCCTCCACAACTAACTACAAGGGA
Found at i:873101 original size:52 final size:49
Alignment explanation
Indices: 873021--873149 Score: 179
Period size: 52 Copynumber: 2.6 Consensus size: 49
873011 AGGAGAGGAG
* *
873021 AGGACCTTTAGGTGCTCGAC-CATAAGGACCTTTAGGTGCTCGACTGATA
1 AGGACCTTTAGGTGCTCGACTGATAAGGACCTTTAGGTGCTCGAC-CATA
* *
873070 AGGACCCTTTAGGGGGCTCGACTGATAAGGACCTTTAGGTGCTCGACCCTA
1 AGGA-CCTTTA-GGTGCTCGACTGATAAGGACCTTTAGGTGCTCGACCATA
*
873121 AGGACCTTTAGGTGCTCGACTGTTAAGGA
1 AGGACCTTTAGGTGCTCGACTGATAAGGA
873150 GAGGGAGAGG
Statistics
Matches: 71, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
49 21 0.30
50 12 0.17
51 15 0.21
52 23 0.32
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (49 bp):
AGGACCTTTAGGTGCTCGACTGATAAGGACCTTTAGGTGCTCGACCATA
Left flanking sequence: Indices 872521 -- 873020
ATAAGGAGAGGAGAGGGAGAATGTCCAAAACCTCCGCCAAGCTAAAACGGCCAAATTAGTAGGGT
TTTAACGCTCGACCAGGGGGGAGAGGGAAAGATGTGAAAACCTCCGCCAAAGCATATATTCTCTA
TGTCATTATGCATGAATTATAAGGGAGAGGAACTTTAGTTGCTCGACCATAAGCCCACCCAATAA
GCAGGCTCGACCGCTAGCTAGTTACTTATTTGAGAGGGGCACCCAATTCATTGGCTGCCGTAATG
ACATATATAATGAGTGATTTCCTAGCTAGAGAAGAAAGAATGGTCGAGCGGCTCCTTGCTTCGGG
CGTACAAGACTCGATCTATCTCTCTTTAGCCAGCCTATGTTTTCCAGAGGCATGCATCGAGAGCC
CCGTGGAATATCGTCTGAAAGAATGCGTAAGCAGGCTCGACTGATAAGGATGCGCAAGCAGGCTC
GACTGTTAAGGACCCTTTAGGGGGCTCGACTGATAAGGAGAGGAG
Right flanking sequence: Indices 873150 -- 873649
GAGGGAGAGGAGAGGAGAGGATGCGTAAGCAGGCTCGACTGTGAAACCCCCCAACCCAATAAGTA
AACCCTAACCTTTAGGTGCTCGACTGTTAAGGAGAGGGAGAGGAGCACGCTCGACCACCCAATAA
GCATCAAGGAAGGCAGGGCTCGACTGTTAAGGAGAGGATGCGGAGCACGCTCGACCAACGCCCCC
CACCCAATAAGCATCAAGGGTTTTGATGCGTAATGACATATATAATGAAACGGCATCTCCATGAG
CATGAAGGAAGGTACAGATCCGTGCAGCTGTTCTCTCTTCCAGGAAGAGGTATGGAGAATGAAAT
GGAAGGGTACAAAATGAAAGGTCCGGAGGGCTTGCGCTTCTGAGGGCAAGGAGAAATACGTCGAA
CGAAGTGGGCAGTTAGCAGCGGATTTCTCAATACCAAGAAATCATGAAGAGTACCATCCCTCAGA
ACGGAAATAGCTTTCCTCCACAACTAACTACAAGGGACCTCACTA
Found at i:873758 original size:12 final size:12
Alignment explanation
Indices: 873741--873765 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
873731 CCTCCTGTCG
873741 TCCCGGGGTCCC
1 TCCCGGGGTCCC
873753 TCCCGGGGTCCC
1 TCCCGGGGTCCC
873765 T
1 T
873766 GCGGCTTCCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.48, G:0.32, T:0.20
Consensus pattern (12 bp):
TCCCGGGGTCCC
Left flanking sequence: Indices 873241 -- 873740
TTAAGGAGAGGGAGAGGAGCACGCTCGACCACCCAATAAGCATCAAGGAAGGCAGGGCTCGACTG
TTAAGGAGAGGATGCGGAGCACGCTCGACCAACGCCCCCCACCCAATAAGCATCAAGGGTTTTGA
TGCGTAATGACATATATAATGAAACGGCATCTCCATGAGCATGAAGGAAGGTACAGATCCGTGCA
GCTGTTCTCTCTTCCAGGAAGAGGTATGGAGAATGAAATGGAAGGGTACAAAATGAAAGGTCCGG
AGGGCTTGCGCTTCTGAGGGCAAGGAGAAATACGTCGAACGAAGTGGGCAGTTAGCAGCGGATTT
CTCAATACCAAGAAATCATGAAGAGTACCATCCCTCAGAACGGAAATAGCTTTCCTCCACAACTA
ACTACAAGGGACCTCACTATAATCGAACTAGACTTCACTCGAACTAGACTTTTGCGGGGGAAATC
AAACTAGACTTCTATGGTGGCTTGTAATACGGTGGCCTCCTGTCG
Right flanking sequence: Indices 873766 -- 874265
GCGGCTTCCTGTCGTCCCGGGGTCCCTGCGGCTTCCTGTCGTCCCGGGGTCCCTCAGGTTTCCTG
TCGCCCCTTTTCGTTCTCCTCGCCCCCCTTTTCACACCAATATATGTTTCCAACCGCCGGCGCTG
GCGGCCGGGTTTTTCATAGAATTGATTCAAAAGGTGCGAAGCCGCTTGTCCCTCCGGGGGCAAGG
AAATCAATCTCCTCAAAGTCCTCCATCTCCTTTTTCGGATCCTTATTATATCTACGAAAATGATA
TCTACGAAAATAGTGCTCGGGAGCCTCGGCAAATATTCTCTTGCACAAGCGGTCCCACCCCGCTA
ACCCCCTAACCTCGGTCTGGACGAACGAGTCAACAAAAGCCTCGGTCTGGACGAACGAGTCAACA
AAAGATCGGATGGTATCTCGTAGGGGGCGGCGTTTTGTCTGCCCATGAATTTTGAGTGCCGCATG
ATAGACATAATTTTGTGAATCCTTTGCCTCTGTTCGATGCGGGAC
Found at i:873783 original size:27 final size:27
Alignment explanation
Indices: 873753--873833 Score: 137
Period size: 27 Copynumber: 3.0 Consensus size: 27
873743 CCGGGGTCCC
873753 TCCCGGGGTCCCTGCGGCTTCCTGTCG
1 TCCCGGGGTCCCTGCGGCTTCCTGTCG
873780 TCCCGGGGTCCCTGCGGCTTCCTGTCG
1 TCCCGGGGTCCCTGCGGCTTCCTGTCG
*
873807 TCCCGGGGTCCCT-CAGGTTTCCTGTCG
1 TCCCGGGGTCCCTGC-GGCTTCCTGTCG
873834 CCCCTTTTCG
Statistics
Matches: 52, Mismatches: 1, Indels: 2
0.95 0.02 0.04
Matches are distributed among these distances:
26 1 0.02
27 51 0.98
ACGTcount: A:0.01, C:0.40, G:0.32, T:0.27
Consensus pattern (27 bp):
TCCCGGGGTCCCTGCGGCTTCCTGTCG
Left flanking sequence: Indices 873253 -- 873752
AGAGGAGCACGCTCGACCACCCAATAAGCATCAAGGAAGGCAGGGCTCGACTGTTAAGGAGAGGA
TGCGGAGCACGCTCGACCAACGCCCCCCACCCAATAAGCATCAAGGGTTTTGATGCGTAATGACA
TATATAATGAAACGGCATCTCCATGAGCATGAAGGAAGGTACAGATCCGTGCAGCTGTTCTCTCT
TCCAGGAAGAGGTATGGAGAATGAAATGGAAGGGTACAAAATGAAAGGTCCGGAGGGCTTGCGCT
TCTGAGGGCAAGGAGAAATACGTCGAACGAAGTGGGCAGTTAGCAGCGGATTTCTCAATACCAAG
AAATCATGAAGAGTACCATCCCTCAGAACGGAAATAGCTTTCCTCCACAACTAACTACAAGGGAC
CTCACTATAATCGAACTAGACTTCACTCGAACTAGACTTTTGCGGGGGAAATCAAACTAGACTTC
TATGGTGGCTTGTAATACGGTGGCCTCCTGTCGTCCCGGGGTCCC
Right flanking sequence: Indices 873834 -- 874333
CCCCTTTTCGTTCTCCTCGCCCCCCTTTTCACACCAATATATGTTTCCAACCGCCGGCGCTGGCG
GCCGGGTTTTTCATAGAATTGATTCAAAAGGTGCGAAGCCGCTTGTCCCTCCGGGGGCAAGGAAA
TCAATCTCCTCAAAGTCCTCCATCTCCTTTTTCGGATCCTTATTATATCTACGAAAATGATATCT
ACGAAAATAGTGCTCGGGAGCCTCGGCAAATATTCTCTTGCACAAGCGGTCCCACCCCGCTAACC
CCCTAACCTCGGTCTGGACGAACGAGTCAACAAAAGCCTCGGTCTGGACGAACGAGTCAACAAAA
GATCGGATGGTATCTCGTAGGGGGCGGCGTTTTGTCTGCCCATGAATTTTGAGTGCCGCATGATA
GACATAATTTTGTGAATCCTTTGCCTCTGTTCGATGCGGGACCCAGCCTTCCACCACTGAAAACC
CGGATACATCGGGAAATTTCTTTTTATCTGTATCTAGGGATTGTA
Found at i:874028 original size:15 final size:15
Alignment explanation
Indices: 874008--874036 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
873998 GATCCTTATT
874008 ATATCTACGAAAATG
1 ATATCTACGAAAATG
874023 ATATCTACGAAAAT
1 ATATCTACGAAAAT
874037 AGTGCTCGGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.48, C:0.14, G:0.10, T:0.28
Consensus pattern (15 bp):
ATATCTACGAAAATG
Left flanking sequence: Indices 873508 -- 874007
GCGCTTCTGAGGGCAAGGAGAAATACGTCGAACGAAGTGGGCAGTTAGCAGCGGATTTCTCAATA
CCAAGAAATCATGAAGAGTACCATCCCTCAGAACGGAAATAGCTTTCCTCCACAACTAACTACAA
GGGACCTCACTATAATCGAACTAGACTTCACTCGAACTAGACTTTTGCGGGGGAAATCAAACTAG
ACTTCTATGGTGGCTTGTAATACGGTGGCCTCCTGTCGTCCCGGGGTCCCTCCCGGGGTCCCTGC
GGCTTCCTGTCGTCCCGGGGTCCCTGCGGCTTCCTGTCGTCCCGGGGTCCCTCAGGTTTCCTGTC
GCCCCTTTTCGTTCTCCTCGCCCCCCTTTTCACACCAATATATGTTTCCAACCGCCGGCGCTGGC
GGCCGGGTTTTTCATAGAATTGATTCAAAAGGTGCGAAGCCGCTTGTCCCTCCGGGGGCAAGGAA
ATCAATCTCCTCAAAGTCCTCCATCTCCTTTTTCGGATCCTTATT
Right flanking sequence: Indices 874037 -- 874536
AGTGCTCGGGAGCCTCGGCAAATATTCTCTTGCACAAGCGGTCCCACCCCGCTAACCCCCTAACC
TCGGTCTGGACGAACGAGTCAACAAAAGCCTCGGTCTGGACGAACGAGTCAACAAAAGATCGGAT
GGTATCTCGTAGGGGGCGGCGTTTTGTCTGCCCATGAATTTTGAGTGCCGCATGATAGACATAAT
TTTGTGAATCCTTTGCCTCTGTTCGATGCGGGACCCAGCCTTCCACCACTGAAAACCCGGATACA
TCGGGAAATTTCTTTTTATCTGTATCTAGGGATTGTAAGTCTGTCAATAGTAAGTCTGTCACTGT
CAATTTACCTATAACGCGCGACGGCATTGGAAACATCGTGATCTGCCAGAACTGCTCGTTCCTTG
GTTTCATACTTGAGAATCTGTGCTTTTTCACACTAGGGGCCCATTTCCCTAGTGGCCGTGCATAC
CGAAAAAAGACTAGAGAAAAACCATTCTGTTCTGTTCCTCTTCGA
Found at i:874134 original size:30 final size:30
Alignment explanation
Indices: 874100--874159 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
874090 AACCCCCTAA
874100 CCTCGGTCTGGACGAACGAGTCAACAAAAG
1 CCTCGGTCTGGACGAACGAGTCAACAAAAG
874130 CCTCGGTCTGGACGAACGAGTCAACAAAAG
1 CCTCGGTCTGGACGAACGAGTCAACAAAAG
874160 ATCGGATGGT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.33, C:0.27, G:0.27, T:0.13
Consensus pattern (30 bp):
CCTCGGTCTGGACGAACGAGTCAACAAAAG
Left flanking sequence: Indices 873600 -- 874099
TCAGAACGGAAATAGCTTTCCTCCACAACTAACTACAAGGGACCTCACTATAATCGAACTAGACT
TCACTCGAACTAGACTTTTGCGGGGGAAATCAAACTAGACTTCTATGGTGGCTTGTAATACGGTG
GCCTCCTGTCGTCCCGGGGTCCCTCCCGGGGTCCCTGCGGCTTCCTGTCGTCCCGGGGTCCCTGC
GGCTTCCTGTCGTCCCGGGGTCCCTCAGGTTTCCTGTCGCCCCTTTTCGTTCTCCTCGCCCCCCT
TTTCACACCAATATATGTTTCCAACCGCCGGCGCTGGCGGCCGGGTTTTTCATAGAATTGATTCA
AAAGGTGCGAAGCCGCTTGTCCCTCCGGGGGCAAGGAAATCAATCTCCTCAAAGTCCTCCATCTC
CTTTTTCGGATCCTTATTATATCTACGAAAATGATATCTACGAAAATAGTGCTCGGGAGCCTCGG
CAAATATTCTCTTGCACAAGCGGTCCCACCCCGCTAACCCCCTAA
Right flanking sequence: Indices 874160 -- 874659
ATCGGATGGTATCTCGTAGGGGGCGGCGTTTTGTCTGCCCATGAATTTTGAGTGCCGCATGATAG
ACATAATTTTGTGAATCCTTTGCCTCTGTTCGATGCGGGACCCAGCCTTCCACCACTGAAAACCC
GGATACATCGGGAAATTTCTTTTTATCTGTATCTAGGGATTGTAAGTCTGTCAATAGTAAGTCTG
TCACTGTCAATTTACCTATAACGCGCGACGGCATTGGAAACATCGTGATCTGCCAGAACTGCTCG
TTCCTTGGTTTCATACTTGAGAATCTGTGCTTTTTCACACTAGGGGCCCATTTCCCTAGTGGCCG
TGCATACCGAAAAAAGACTAGAGAAAAACCATTCTGTTCTGTTCCTCTTCGAAGTATATGTTCCT
CTCTCATCTGCTTGAGATAGGCCTGTCACCCTTGCTCTCAAGCTCGGAGGGGATTAGCTTCAAGG
GATTGTGTTCTTGCCGAGGGAGCGCTTCCCAAAAAGTGCCTAGAA
Found at i:875959 original size:8 final size:8
Alignment explanation
Indices: 875946--875971 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
875936 GTTCGGGTCA
875946 TTCCAACC
1 TTCCAACC
875954 TTCCAACC
1 TTCCAACC
875962 TTCCAACC
1 TTCCAACC
875970 TT
1 TT
875972 ACAGAAGGGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.23, C:0.46, G:0.00, T:0.31
Consensus pattern (8 bp):
TTCCAACC
Left flanking sequence: Indices 875446 -- 875945
AAGGTTCGATGGCTATGGCTTGGCTGTTGAGATCGTTTAGATGGCTTGGATGGAGAGATAGCAGT
GATGGTTCGTTAGCTAGCGATGGTTCTGTTTCGGTTATACCAATTGTTCGTGGAAATAGATCATC
GGGGGTTAGACCAATTGTATTGGACAACATTGTGTTAGACCATTTGTTCGTGGACAAGTAGCAGC
ACGAGACCATGTTCAGCTTTGACGGGTATGTTTCGGTAACAGCTTCGACCGTACCAATTGCTTGG
GATGATGATGACCAGCCAACGAGCTAGCGATAGAAGCACGAGACGAGGTGGAGCTTCGCGCAGTA
TAAGTATTAGTCTAAATCACTAGCTTGACCTTATCCTTTTCCTTATCCTTTGGGTTGATAAGGTT
CAGCTTGATCTTATCTTATCTTGACTTGATCGGTAACAGCATAAAAGAAACCTGCCTTAACTATT
TGATTTGCTTGGGGCTGTTTCACGAGGACAGGTTGGTTCGGGTCA
Right flanking sequence: Indices 875972 -- 876471
ACAGAAGGGAGCTTAAACGAACTTTAGCGACACAGACACCGCTATCGACCCCTTCATGGACTCCG
CAGTCATACCAACCAAAGAAGAGCTTTCGGCACATAATCCATACACCTACGAGGCTTCATTAACT
CTATATTATTGTCCCCATTTGATTCTCATTTCTTCATACTATTCTTGATCCAGGAAGTCTATCGA
GGATGCATATACCACTCGACTTAACATGATACCATATACCCTGATACACCTCTTGATCCCCACCC
TTCATACTTATCACACCTCCTACACCTTTACCCCTAGACAGGCATACCACAACTTTGCTATGGTC
TTCTCTCATATTGAGCACAATATTATAACATACGCCTCCTTTTCAACTAGCCTAACTACTACTTA
TACTACTACCCATACTACCCAGTTGAACACCACTTTCGCACCCGCTACAGCCCTTGAATTGATCT
AAGGGATCCAATTTGATTACCGGAGTCAACTTGATTGAATTCATC
Found at i:876640 original size:23 final size:23
Alignment explanation
Indices: 876614--876680 Score: 134
Period size: 23 Copynumber: 2.9 Consensus size: 23
876604 CTTGGGATCC
876614 ATTGAATTACTTACTAGTTGGCT
1 ATTGAATTACTTACTAGTTGGCT
876637 ATTGAATTACTTACTAGTTGGCT
1 ATTGAATTACTTACTAGTTGGCT
876660 ATTGAATTACTTACTAGTTGG
1 ATTGAATTACTTACTAGTTGG
876681 ATGACCAAGC
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 44 1.00
ACGTcount: A:0.27, C:0.12, G:0.18, T:0.43
Consensus pattern (23 bp):
ATTGAATTACTTACTAGTTGGCT
Left flanking sequence: Indices 876114 -- 876613
CCCCATTTGATTCTCATTTCTTCATACTATTCTTGATCCAGGAAGTCTATCGAGGATGCATATAC
CACTCGACTTAACATGATACCATATACCCTGATACACCTCTTGATCCCCACCCTTCATACTTATC
ACACCTCCTACACCTTTACCCCTAGACAGGCATACCACAACTTTGCTATGGTCTTCTCTCATATT
GAGCACAATATTATAACATACGCCTCCTTTTCAACTAGCCTAACTACTACTTATACTACTACCCA
TACTACCCAGTTGAACACCACTTTCGCACCCGCTACAGCCCTTGAATTGATCTAAGGGATCCAAT
TTGATTACCGGAGTCAACTTGATTGAATTCATCGCTCCTCGTACACCTTCATTTGCCTTTTGACG
CGAGTTACCAACTTGATTATGAGGAAGATTAGGATTTCGATTATGGTGTTGACCCTTACTTGAGA
TATCAATTTAGCTTGTTTATCTTTCCTCGGCTTTGCTTGGGATCC
Right flanking sequence: Indices 876681 -- 877180
ATGACCAAGCATGGAATCTGTCCCTCCCTCGTAGAGGGAGGGGAACCCCTTGTCTAAAAACGGAC
TAAAGCGTGTGACCTGGATCATACCCTGTGATCGTTATGATGGACAGGTGCTTACCCGATCCCAT
TCCGACCTCGACATGTAAGCCTGTCCGAGAACACAATCTGATTCAGAAAGACTCCCCATACATAT
GACTGGCTGGCGTGAGCGGTGAGAGTAGGTGTGGAGTCAAAGGCGGACTTCCGGATACATACATT
GAAGGGAGGAGTTCTCGCTGGCTTCCGAGATAGGGTTCTACCTACGGGAGGAGAAGGGAAGGGAA
TGCATTCTTCCTGGCTTGCCTGCCCTCTCTCTCTTAATGGGGGAATAAGGCACGCATAATGACTT
ATATAATAGCAGCATTGTCGTAAGTAAACCGCTCTTATGACATAATCGTATATAAGCTACTAGAA
AGAAAGAGGGAGATATAGCATAACGATCGATATAATCCGATGCAT
Found at i:879323 original size:13 final size:13
Alignment explanation
Indices: 879305--879337 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
879295 GTAGCCTGCC
879305 AGCCCCTTCTCAT
1 AGCCCCTTCTCAT
879318 AGCCCCTTCTCAT
1 AGCCCCTTCTCAT
*
879331 AGTCCCT
1 AGCCCCT
879338 AGTCAGTGCC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.15, C:0.45, G:0.09, T:0.30
Consensus pattern (13 bp):
AGCCCCTTCTCAT
Left flanking sequence: Indices 878805 -- 879304
ACCCGTTGTTTCCATGGGTCGTTGACATAATCTTCCACTGGGTTAGTCAATGTCATTTGTCATTA
GGCAAGTCGCTAAATGAGAGCCTTTCAGGTTCTTCCTTCTCCATCCATCCTCGCATCGTCCTAGG
GTGCCAGTCAAAAGGGTAAGGGTGTGTTTGTTTCATTCCAACCAATCCTGGGTCTATAGTTGTTC
CCTCCTAAAGCCTAAGGTATAAAAGTTCAGCCAGGGTTACCAGGTCTAGTTCTGGCAGGTAGAGT
GAGTGGTTCCTATATGCGAGATAACCTCCTCCGTACACAAGCTTTACCAGAGAGGTTTCTCTCTT
CCCTTGACGAGGACTAGATAGAATACCTTATTTTAAGGACTCCCTTTCAGGAGATCCGTTCATCC
CAGCCCTTCCCTTTGGCAGCCGCTAATAAATCAAGCCAAGCCTGCAAGCAGCACATCCATATCTG
TCCAATGAACCAAAGAATAGGCGATTTCCCACCCCGTAGCCTGCC
Right flanking sequence: Indices 879338 -- 879837
AGTCAGTGCCAGTGGTCGTTGCCAAGAGTTAGGTCACTGTCACAAGGTCAGGCTATAGCAGCCAA
GCATTGACAATTGATCATACACTGCTGGTCATAGTACATCAGAGCTGCCAAATACAGCTAGTCAT
AGTCCATCATTCCCAAACAGTCACTGCCTTATGATAATAGTAGGGTTGGGGTCGCCGAGTGGAAG
GAAGGACAAGTTGATGTCGAAGAAGGACAAGCAAGTTGATTTCCAAGTTGATCGCTTTATATACT
CGCACCCCGGCGGGACTAAGGAAGCCAGGGTTGGACGAGGTGGCTGGGCTTTGATACTCTTTGAT
TGATACAGAGAGAGATGGGCTTGATACACTCTTTTACAGGAAGGAGGAAGTAACATAAAGCACCC
CACATAGCTCTGGACATGCACGGTACCGTACGGTATGGCACACGGTACAGCGACGAATTCTTCCC
TGCCTGGGCTGGCCTGGCCTGGACTACATGGTTGGGCTGATCGGT
Found at i:879882 original size:13 final size:13
Alignment explanation
Indices: 879866--879891 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
879856 TACTCGACTG
879866 GGATACTCAGCTT
1 GGATACTCAGCTT
879879 GGATACTCAGCTT
1 GGATACTCAGCTT
879892 CACTCCCGGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.23, G:0.23, T:0.31
Consensus pattern (13 bp):
GGATACTCAGCTT
Left flanking sequence: Indices 879366 -- 879865
TTAGGTCACTGTCACAAGGTCAGGCTATAGCAGCCAAGCATTGACAATTGATCATACACTGCTGG
TCATAGTACATCAGAGCTGCCAAATACAGCTAGTCATAGTCCATCATTCCCAAACAGTCACTGCC
TTATGATAATAGTAGGGTTGGGGTCGCCGAGTGGAAGGAAGGACAAGTTGATGTCGAAGAAGGAC
AAGCAAGTTGATTTCCAAGTTGATCGCTTTATATACTCGCACCCCGGCGGGACTAAGGAAGCCAG
GGTTGGACGAGGTGGCTGGGCTTTGATACTCTTTGATTGATACAGAGAGAGATGGGCTTGATACA
CTCTTTTACAGGAAGGAGGAAGTAACATAAAGCACCCCACATAGCTCTGGACATGCACGGTACCG
TACGGTATGGCACACGGTACAGCGACGAATTCTTCCCTGCCTGGGCTGGCCTGGCCTGGACTACA
TGGTTGGGCTGATCGGTTGGACTTATCAGCTTTGCTACTCGACTG
Right flanking sequence: Indices 879892 -- 880391
CACTCCCGGGCTGGGCTGGAAATAGACATAGACGTAGATCAGGGGAGGGGCCATCATAGTCGATC
ATAGCCGATAGACACACACAGCTTCTCATTGCCTTTAGGTACGTGCGATACGGTAGTCGTTCATT
GTAGATAGCCAGTTGCCTTTGCCGGGAGTACTTGTCTCATTGACGATAACCGCTAGTCATAGTCC
CCATTATAGCCAGCTTTTCAGTGCCAATTGCCGATAGTCATTAGTCCCCTTTCAGAGACACACTG
CCAGAATCACAGAGCTGGACCCCACAGGGTTGTACATACAGAACAATGGTTCCTACCTGCTCCAC
ACTGAACCTACGGAACCTTAGTTCTATCTCGATCGGATGACATGAACGATACATTCATTACTGAC
TATGCACCCGTTGATGAGAATGGATCATGCGACAGACACATGGGTTTCATTCACGCTTGTCAGGG
AATGACAGTCAGCGATGGGAAGTGGCCCGATTGATTGCATTGATT
Found at i:880796 original size:12 final size:12
Alignment explanation
Indices: 880779--880804 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
880769 CAACCGTGGC
880779 CCTCGAAATAGA
1 CCTCGAAATAGA
880791 CCTCGAAATAGA
1 CCTCGAAATAGA
880803 CC
1 CC
880805 CTACGAACTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.38, C:0.31, G:0.15, T:0.15
Consensus pattern (12 bp):
CCTCGAAATAGA
Left flanking sequence: Indices 880279 -- 880778
GACTATGCACCCGTTGATGAGAATGGATCATGCGACAGACACATGGGTTTCATTCACGCTTGTCA
GGGAATGACAGTCAGCGATGGGAAGTGGCCCGATTGATTGCATTGATTGCCCACATAAGCAGAAA
GGGGCGGTACAACGAACGGACGAATGACAGCTTGAGCGTTGGCAGCCTTACCGATCGATACCGAA
CAGGAGGTCCTACAGATACTCACAGGGAGGGACTAATCCAATGGGAAGCACTCTTCGAACCTATC
CTCAGTGAGTGCATGAACCTATGGTCGATGCATGAAGCTCTGGTACGTCGGTACATGAATGAAGC
TCCTTTCAGTGCAGCAATTAGCTCTTGTCGGTGCAGCTAGCCTACTATAATTAGGGGGCAGCAGC
ATGATGAAGCTATGGTTGGTGCAGCTAGAAGTGATTGCCTTGAGAAAGAGAACATCATTCCAATA
AGAAGAGACAGGAGACCTCGCCCCTCAACTAGACCCAACCGTGGC
Right flanking sequence: Indices 880805 -- 881304
CTACGAACTCTAATAAATACACCCTCTACCCTACCAAACTACACCCTACACGGTACGGGGCCGAG
TGAGTGAGTCACCATTGGGTTCATAGCTGATTGACACTCATTCCCAATCATTCACAACCGGTCAT
TACCAATCAGCCGACAGGATATCAGACCCCCGAGCATCATTGCCGTAGATCATTGACGATACCAG
AGAGACCCTCATTCACAGGAGGTGCCGATACCCAGTTACCGATACCCGCAAGACCATGCCCCTCA
TTCCCACCGGTCAATGCCAGCCGAGAGGACATCAGGCCCAGGAAGGAGGTACCGATTCACGATAG
ACGATACCCAGACCCTCATTACCCACCAGACCAGGAGGTTGACACAGGGAGGGGCCTAATCACAG
GGAGGGCACACTCCTACTGCTACCACGTAGAGCTACAAATACACAGAGTCAATTTGCATAATCGC
ATATATAATGACAGGAGCTAAATAGTGCATGCAGAGCGCCTTAAT
Found at i:882755 original size:21 final size:21
Alignment explanation
Indices: 882730--882770 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
882720 GGTGATTTAG
882730 AGATCC-TAAGTATAAGTATGT
1 AGATCCAT-AGTATAAGTATGT
*
882751 AGATCCATAGTATCAGTATG
1 AGATCCATAGTATAAGTATG
882771 ACATTTTCTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 17 0.94
22 1 0.06
ACGTcount: A:0.37, C:0.12, G:0.20, T:0.32
Consensus pattern (21 bp):
AGATCCATAGTATAAGTATGT
Left flanking sequence: Indices 882230 -- 882729
CCAGCCGATTGCCAATCATTCACAAACGGTCATTCCTAGTCAGCCGAGAGTCGATCATACCCACA
TTGACCTTCATACCTGAGTCACCCTAACCACATGACACATCCACCCAACACGGGTAAGGTACGGG
ACGGGAAGAAGCTACGAGACAGGACGGCACGGGAAGGGAAGGGACCGAGTGAGTGAGGCACAGAC
ATAGGGGCATTCATTGCCGATAGCAGCCGATAGTTGATGCAGTCGATCCAAGAGTCTTTGTCAAT
GACAAGAGGCGATCCAAGTGTTTATATTCGATGCTTAGCTTTCTTTCATCTTGAATTTTTATCAC
GTCCTGATGCAAGGTCTAATCTCACGTCCCAATACGAGGATGCCCCCGGCAGGGTGAGGTAACGA
ACGCTCGACTAAGAGGAGAGGGCTCGACTGTTAAGGAGAGGTAAAATCTAAGGGCCCTCGAACCT
CATCCCTTTCCCCCAGATGAGGGGACTTTCTCACAGGTGATTTAG
Right flanking sequence: Indices 882771 -- 883270
ACATTTTCTTGACGGGGATAACCTCGAGCCCCACCTACTAGCGGGGATAACCTCCCTACCTACTA
GCGCGGTTGAAGATGCGAGTGAATTGAATGGTTGAATGAGTCCCGCGAGTCCCGCTGATGATAGA
ATTTGCAAGTGATTTCCTGCTGATTTCCTGCTGATGACTGCAGCATTGAATTGATGTTCCCCCCT
GCATTGAATGGTGAGACTAGGCTTGAAAGCTGGCATCTATATTTCCTTGCCCCCCGGAGGGACAA
GCGGCTTCGCACCTTGGTACGAAAGCTAAGCAAGAGAAGTCTAGCAAATGAGGTGAAAAGGTCAA
AGTGTGGAAAGGGATAAGAAAGTAAGCAACGAAGTCAAGGGTGGACTTGGGTACTACGAAGGTAA
GTAGGATATGCTAACTAAGGTGAGGGAGACAAGGCCTAGTGCTTTGGACTAAAGAAGAGGAGTGA
AGGTATGAAGGGTGACTAATGGGCAAAGGAGTCAAGGGGTCTTTG
Found at i:882924 original size:11 final size:11
Alignment explanation
Indices: 882910--882935 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
882900 AATTTGCAAG
882910 TGATTTCCTGC
1 TGATTTCCTGC
882921 TGATTTCCTGC
1 TGATTTCCTGC
882932 TGAT
1 TGAT
882936 GACTGCAGCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.12, C:0.23, G:0.19, T:0.46
Consensus pattern (11 bp):
TGATTTCCTGC
Left flanking sequence: Indices 882410 -- 882909
GAGTGAGGCACAGACATAGGGGCATTCATTGCCGATAGCAGCCGATAGTTGATGCAGTCGATCCA
AGAGTCTTTGTCAATGACAAGAGGCGATCCAAGTGTTTATATTCGATGCTTAGCTTTCTTTCATC
TTGAATTTTTATCACGTCCTGATGCAAGGTCTAATCTCACGTCCCAATACGAGGATGCCCCCGGC
AGGGTGAGGTAACGAACGCTCGACTAAGAGGAGAGGGCTCGACTGTTAAGGAGAGGTAAAATCTA
AGGGCCCTCGAACCTCATCCCTTTCCCCCAGATGAGGGGACTTTCTCACAGGTGATTTAGAGATC
CTAAGTATAAGTATGTAGATCCATAGTATCAGTATGACATTTTCTTGACGGGGATAACCTCGAGC
CCCACCTACTAGCGGGGATAACCTCCCTACCTACTAGCGCGGTTGAAGATGCGAGTGAATTGAAT
GGTTGAATGAGTCCCGCGAGTCCCGCTGATGATAGAATTTGCAAG
Right flanking sequence: Indices 882936 -- 883435
GACTGCAGCATTGAATTGATGTTCCCCCCTGCATTGAATGGTGAGACTAGGCTTGAAAGCTGGCA
TCTATATTTCCTTGCCCCCCGGAGGGACAAGCGGCTTCGCACCTTGGTACGAAAGCTAAGCAAGA
GAAGTCTAGCAAATGAGGTGAAAAGGTCAAAGTGTGGAAAGGGATAAGAAAGTAAGCAACGAAGT
CAAGGGTGGACTTGGGTACTACGAAGGTAAGTAGGATATGCTAACTAAGGTGAGGGAGACAAGGC
CTAGTGCTTTGGACTAAAGAAGAGGAGTGAAGGTATGAAGGGTGACTAATGGGCAAAGGAGTCAA
GGGGTCTTTGAAGGGGAAGAGGTAGGATAGAAGAGATGGAAGAAAAGGAAAGCAAGAAATAAAGG
ATGAAGACATCCGTCTCGTAAGATGGGTATGAGTATAGTATATGTACTCAGAGGTAACTTCGACT
GGGCTGCCCGCTGACTGAGGTAAGCGATCTGTCTTAAAGAAGAAG
Found at i:884297 original size:14 final size:14
Alignment explanation
Indices: 884278--884305 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
884268 CGATATTCGT
884278 CGTGCTTACAGAGC
1 CGTGCTTACAGAGC
884292 CGTGCTTACAGAGC
1 CGTGCTTACAGAGC
884306 TTGGTCCAGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.21, C:0.29, G:0.29, T:0.21
Consensus pattern (14 bp):
CGTGCTTACAGAGC
Left flanking sequence: Indices 883778 -- 884277
GGTGGGTCGATTCAAAGGCTCCTGGTATTTTGGCTGAACGAACTCTTTAGATTAGAGCAGACCAG
GATCACTCATTCATATCCAGACCTTTAGTGAGTTGTTCAGAGCAGACCAGGTTCAGTCCATCCTG
AAGGAAAGGAACCTGAACGAAATAAACGCCATTCCCAGACAGTCCGACAAGCCAGGTTGGTGGAT
GGGTTGAGCCTACAGTCAGACAGTCAGACAGTCACTCGGACCTACAGTCAGATTCGTGTTTACCA
GTCGATATACTTTGCCATCAGAGAACAGTGCTGGCCGAAGCCCGGGGACACACACCCAGCATTTG
GACTTACTTATTACTTATTAATCGTTTTCTTTATGAACTCATTTACCCAGCCCAAAGACTCAGCA
TTTTGAATTCTTATTACTTATGTTATTACTGTATCCAGCCAATCCCAGTCGTCCTTCCAGAGTTG
TTAGTACAGATTCGTGCTTCCAGAGCTTAGTTGGTCGATATTCGT
Right flanking sequence: Indices 884306 -- 884805
TTGGTCCAGAGTAGTCGTGCTTACAGACAGAGCTTTCACAGTTAGTCGATATTCGTTGTGCTTAC
AGACAGAGTTGGTCCATCGTTGGTCGATAAGTCACATTCCCATTTATTACTTATGTTCTTATCAC
TTATGTTCTTATCCCATTCTTTTGAACAGCCAATCCCAGTCCTTGTTACAGAGTTTGTCCATATT
AGTGCTTCCAGAGTTTGTCGATAGTTTGTCGATAAGCTACATTTAATTCCCAGCCACTTAGTCTT
CTTTATGTTAGAACTTATTAGCCAGCCAATCCCAGTAGTGCTTATAGAGCCTGGTCCTTATTCCT
GCCTACAGAGCTTAGTTGGTCGATCTTCCTGCTTACAGAGCTTGGTCCAGAGTTGGTCGATAAGC
TAAATTAGTTGGTCCATAGGATAGATAGTTGGTAGATCTTCCTGCTTACATTGCTTTGTTGGTCC
AGATTAGGGCTTCATTTACAGAGTTGGTCGATAAGCCGGCCACCC
Found at i:884437 original size:15 final size:15
Alignment explanation
Indices: 884414--884448 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
884404 ACATTCCCAT
*
884414 TTATTACTTATGTTC
1 TTATCACTTATGTTC
884429 TTATCACTTATGTTC
1 TTATCACTTATGTTC
884444 TTATC
1 TTATC
884449 CCATTCTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.20, C:0.17, G:0.06, T:0.57
Consensus pattern (15 bp):
TTATCACTTATGTTC
Left flanking sequence: Indices 883914 -- 884413
AGGAACCTGAACGAAATAAACGCCATTCCCAGACAGTCCGACAAGCCAGGTTGGTGGATGGGTTG
AGCCTACAGTCAGACAGTCAGACAGTCACTCGGACCTACAGTCAGATTCGTGTTTACCAGTCGAT
ATACTTTGCCATCAGAGAACAGTGCTGGCCGAAGCCCGGGGACACACACCCAGCATTTGGACTTA
CTTATTACTTATTAATCGTTTTCTTTATGAACTCATTTACCCAGCCCAAAGACTCAGCATTTTGA
ATTCTTATTACTTATGTTATTACTGTATCCAGCCAATCCCAGTCGTCCTTCCAGAGTTGTTAGTA
CAGATTCGTGCTTCCAGAGCTTAGTTGGTCGATATTCGTCGTGCTTACAGAGCCGTGCTTACAGA
GCTTGGTCCAGAGTAGTCGTGCTTACAGACAGAGCTTTCACAGTTAGTCGATATTCGTTGTGCTT
ACAGACAGAGTTGGTCCATCGTTGGTCGATAAGTCACATTCCCAT
Right flanking sequence: Indices 884449 -- 884948
CCATTCTTTTGAACAGCCAATCCCAGTCCTTGTTACAGAGTTTGTCCATATTAGTGCTTCCAGAG
TTTGTCGATAGTTTGTCGATAAGCTACATTTAATTCCCAGCCACTTAGTCTTCTTTATGTTAGAA
CTTATTAGCCAGCCAATCCCAGTAGTGCTTATAGAGCCTGGTCCTTATTCCTGCCTACAGAGCTT
AGTTGGTCGATCTTCCTGCTTACAGAGCTTGGTCCAGAGTTGGTCGATAAGCTAAATTAGTTGGT
CCATAGGATAGATAGTTGGTAGATCTTCCTGCTTACATTGCTTTGTTGGTCCAGATTAGGGCTTC
ATTTACAGAGTTGGTCGATAAGCCGGCCACCCACACAAATTAGGACTTATTATTACTTATGTTCT
TATTGAACCCATTCTCTTATTATCCGGCCAAAAGCATGCAGACACTCCCACACTGATAGAGAGAT
CTAGAGATAGACAGAGAGACAGAGATAGATAGATAGATAGCTTAT
Found at i:884927 original size:18 final size:20
Alignment explanation
Indices: 884896--884932 Score: 60
Period size: 18 Copynumber: 1.9 Consensus size: 20
884886 CCACACTGAT
884896 AGAGAGATCTAGAGATAGAC
1 AGAGAGATCTAGAGATAGAC
884916 AGAGAGA-C-AGAGATAGA
1 AGAGAGATCTAGAGATAGA
884933 TAGATAGATA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 9 0.53
19 1 0.06
20 7 0.41
ACGTcount: A:0.49, C:0.08, G:0.32, T:0.11
Consensus pattern (20 bp):
AGAGAGATCTAGAGATAGAC
Left flanking sequence: Indices 884396 -- 884895
GATAAGTCACATTCCCATTTATTACTTATGTTCTTATCACTTATGTTCTTATCCCATTCTTTTGA
ACAGCCAATCCCAGTCCTTGTTACAGAGTTTGTCCATATTAGTGCTTCCAGAGTTTGTCGATAGT
TTGTCGATAAGCTACATTTAATTCCCAGCCACTTAGTCTTCTTTATGTTAGAACTTATTAGCCAG
CCAATCCCAGTAGTGCTTATAGAGCCTGGTCCTTATTCCTGCCTACAGAGCTTAGTTGGTCGATC
TTCCTGCTTACAGAGCTTGGTCCAGAGTTGGTCGATAAGCTAAATTAGTTGGTCCATAGGATAGA
TAGTTGGTAGATCTTCCTGCTTACATTGCTTTGTTGGTCCAGATTAGGGCTTCATTTACAGAGTT
GGTCGATAAGCCGGCCACCCACACAAATTAGGACTTATTATTACTTATGTTCTTATTGAACCCAT
TCTCTTATTATCCGGCCAAAAGCATGCAGACACTCCCACACTGAT
Right flanking sequence: Indices 884933 -- 885432
TAGATAGATAGCTTATAGTGCTCGGCTTCGCCGGGGAACACACATTCAATTCTCACTTCTCATTA
CTTATGTTCTTATTGAACCAATTATGGTAAGGTATCCAGATACATACTCACTGACACAACCATAC
TACTTCACTCTTATATGCTTATACTCATACATTCTTATTACTTATCTATAGAATAATTAGAGTGC
CGGGCTTCGCCCGGATAAACACTGCTTACACTTCGTTAAACATCGCTTTGTTTCTTTATAATAGA
ACAGGTCGGAAATAAAGAAGAGATAAGAAGGTGCTTCTGGAAGAATAGAAGGGGGAGAGTACTGA
AGGGTCAGGCCTAGACACAGACTGAAGGTAGGTACCACTATAAGGTAATACAAATGTTATAAGTG
CCCAAGCCCTTCCAATATCTCTCTGTAGTAAGGCAGTATTGAATGCAAGAGGGCAGTTTCCACGC
ACGATCCCACACCTGTTGGTAGCTGTCCAACTTCAAGTCTTCCTA
Found at i:886225 original size:78 final size:78
Alignment explanation
Indices: 886096--886295 Score: 357
Period size: 78 Copynumber: 2.6 Consensus size: 78
886086 TTCCCAATTC
886096 GAGGACCGGAGGGGCTCGACCATAAGCCCCCCCACCCAATAAGTAAACCCTAATGCGGGCAGGCT
1 GAGGACCGGAGGGGCTCGACCATAAGCCCCCCCACCCAATAAGTAAACCCTAATGCGGGCAGGCT
886161 CGACTGATAAGGA
66 CGACTGATAAGGA
886174 GAGGACCGGAGGGGCTCGACCATAAGCCCCCCCACCCAATAAGTAAACCCTAATGCGGGCAGGCT
1 GAGGACCGGAGGGGCTCGACCATAAGCCCCCCCACCCAATAAGTAAACCCTAATGCGGGCAGGCT
886239 CGACTGATAAGGA
66 CGACTGATAAGGA
* * *
886252 GAGGACCGGAGGGGCTC-TCAATCTAGCCCCCCCACCCAATAAGT
1 GAGGACCGGAGGGGCTCGACCAT-AAGCCCCCCCACCCAATAAGT
886296 CAATTTCAAC
Statistics
Matches: 118, Mismatches: 3, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
77 3 0.03
78 115 0.97
ACGTcount: A:0.28, C:0.32, G:0.28, T:0.12
Consensus pattern (78 bp):
GAGGACCGGAGGGGCTCGACCATAAGCCCCCCCACCCAATAAGTAAACCCTAATGCGGGCAGGCT
CGACTGATAAGGA
Left flanking sequence: Indices 885596 -- 886095
GGCAGTGTTTATTCCAATAAATACTTGATAGTTTAGAAAGACTATACTCCCTTGTGGTGCTTGGT
ATTAGAAACACCGTTGCTTGCTCCCTTGCGTACCTCTATCTCTTATTGCCACGCCAGTTCGATCT
CCTACTTAGGCTACGAGCACGCTCTCCTCTGTCCAGGTTATGGCCGCTAATGCAGAAGCTTTTGA
TTCATCCCCTCCCTATCCGACGAATGGAGATGAGTAAGCAAGCAATCCCCACGCGGAGTCGTTAG
ATCATCTATCCGTTCAAAGCAGCGGGCGAAAAAGGTAGGGCCCTATATTATTTAGGGGCGGAGCC
ACTCACTATTCATATGGTGAGGGGTCACTCACTATTCATATGGTGAGGCCCGGTAGGGACTCGGC
CGAGGTTACGAGGTCGAGGCCCGGTAGGGACTCACTATTCATATGGTGAGGGATTTCCTATCTGT
TCGATTACCTCTCCATTAGCTGTTGAATCCGTCAATTCCCAATTC
Right flanking sequence: Indices 886296 -- 886795
CAATTTCAACTTTAGTTGCTCGACCACCGCCTTTTAGTTACTTATTTGAGAGGGGCACCCAATAA
GTAAACCCTAACCGGAGGGGCTCTCAATCTAACCCCCCCCACCAATAAGTCAATTTCAACTTTAG
TTGCTCTCAATCTAAGGATGCGTAAGCAGGCTCGACTGATAAGGACCCTTTAGGGGGCTCGACTG
ATAAGGAGAGGAGAGGACCTTTAGGTGCTCGACTGTTAAGGATGCGCAAGCATGCTCGACTGTTA
AGGAGAGGATGCACAAGCAGGCTCTCAATCTAAGGAGAGGAGGCGGAGGTTTTGGAATATTGAGC
AACGAATGAATGCATAATGACATATATAATGAGATATTGTTCGTACAAGCATTCAACCTTCCGCC
TTCATCACCAGCCAAGTCCAACAGAAGCCTTCACCCAGCCAGAAGCCTTCACCCAGCCCCCAGCC
TTAAGCAGACCCGAACCATATGAAATGCATAATGACATAATGACA
Found at i:886468 original size:27 final size:27
Alignment explanation
Indices: 886446--886497 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
886436 TCTAAGGATG
886446 CGTAAGCAGGCTCGACTGATAAGGACC
1 CGTAAGCAGGCTCGACTGATAAGGACC
* * **
886473 CTTTAGGGGGCTCGACTGATAAGGA
1 CGTAAGCAGGCTCGACTGATAAGGA
886498 GAGGAGAGGA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 21 1.00
ACGTcount: A:0.27, C:0.21, G:0.33, T:0.19
Consensus pattern (27 bp):
CGTAAGCAGGCTCGACTGATAAGGACC
Left flanking sequence: Indices 885946 -- 886445
CACTCACTATTCATATGGTGAGGCCCGGTAGGGACTCGGCCGAGGTTACGAGGTCGAGGCCCGGT
AGGGACTCACTATTCATATGGTGAGGGATTTCCTATCTGTTCGATTACCTCTCCATTAGCTGTTG
AATCCGTCAATTCCCAATTCGAGGACCGGAGGGGCTCGACCATAAGCCCCCCCACCCAATAAGTA
AACCCTAATGCGGGCAGGCTCGACTGATAAGGAGAGGACCGGAGGGGCTCGACCATAAGCCCCCC
CACCCAATAAGTAAACCCTAATGCGGGCAGGCTCGACTGATAAGGAGAGGACCGGAGGGGCTCTC
AATCTAGCCCCCCCACCCAATAAGTCAATTTCAACTTTAGTTGCTCGACCACCGCCTTTTAGTTA
CTTATTTGAGAGGGGCACCCAATAAGTAAACCCTAACCGGAGGGGCTCTCAATCTAACCCCCCCC
ACCAATAAGTCAATTTCAACTTTAGTTGCTCTCAATCTAAGGATG
Right flanking sequence: Indices 886498 -- 886997
GAGGAGAGGACCTTTAGGTGCTCGACTGTTAAGGATGCGCAAGCATGCTCGACTGTTAAGGAGAG
GATGCACAAGCAGGCTCTCAATCTAAGGAGAGGAGGCGGAGGTTTTGGAATATTGAGCAACGAAT
GAATGCATAATGACATATATAATGAGATATTGTTCGTACAAGCATTCAACCTTCCGCCTTCATCA
CCAGCCAAGTCCAACAGAAGCCTTCACCCAGCCAGAAGCCTTCACCCAGCCCCCAGCCTTAAGCA
GACCCGAACCATATGAAATGCATAATGACATAATGACATAGAGAATATATGCTTTGGCGGAGCTT
TTCACATCTTTCCCTACTCCTTTTGCCATTTTCTCTTGGCGGAGGTTTGCAATATTGAGCAACGA
ATGAATGAAAGAGCGGAAGAATAGGAAAGAATGAGCAGGTGCATTACTCGAATTCACATCAACAG
CGGACAGCTCACCCAAACAACAGCAGGTGCAAGATGATCAATCGC
Found at i:886730 original size:18 final size:18
Alignment explanation
Indices: 886707--886743 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
886697 CCAAGTCCAA
886707 CAGAAGCCTTCACCCAGC
1 CAGAAGCCTTCACCCAGC
886725 CAGAAGCCTTCACCCAGC
1 CAGAAGCCTTCACCCAGC
886743 C
1 C
886744 CCCAGCCTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.27, C:0.46, G:0.16, T:0.11
Consensus pattern (18 bp):
CAGAAGCCTTCACCCAGC
Left flanking sequence: Indices 886207 -- 886706
ACCCAATAAGTAAACCCTAATGCGGGCAGGCTCGACTGATAAGGAGAGGACCGGAGGGGCTCTCA
ATCTAGCCCCCCCACCCAATAAGTCAATTTCAACTTTAGTTGCTCGACCACCGCCTTTTAGTTAC
TTATTTGAGAGGGGCACCCAATAAGTAAACCCTAACCGGAGGGGCTCTCAATCTAACCCCCCCCA
CCAATAAGTCAATTTCAACTTTAGTTGCTCTCAATCTAAGGATGCGTAAGCAGGCTCGACTGATA
AGGACCCTTTAGGGGGCTCGACTGATAAGGAGAGGAGAGGACCTTTAGGTGCTCGACTGTTAAGG
ATGCGCAAGCATGCTCGACTGTTAAGGAGAGGATGCACAAGCAGGCTCTCAATCTAAGGAGAGGA
GGCGGAGGTTTTGGAATATTGAGCAACGAATGAATGCATAATGACATATATAATGAGATATTGTT
CGTACAAGCATTCAACCTTCCGCCTTCATCACCAGCCAAGTCCAA
Right flanking sequence: Indices 886744 -- 887243
CCCAGCCTTAAGCAGACCCGAACCATATGAAATGCATAATGACATAATGACATAGAGAATATATG
CTTTGGCGGAGCTTTTCACATCTTTCCCTACTCCTTTTGCCATTTTCTCTTGGCGGAGGTTTGCA
ATATTGAGCAACGAATGAATGAAAGAGCGGAAGAATAGGAAAGAATGAGCAGGTGCATTACTCGA
ATTCACATCAACAGCGGACAGCTCACCCAAACAACAGCAGGTGCAAGATGATCAATCGCCTTCCA
CAGCGGCATCACCCCCAATAATATGTGCAACCATTTCTATCCCTTGTCTCTCGTATCTACACATG
CCATCTCAACTCCGGTAGCAGCATAGACACTTTCATCCTTGGACGTATGAGACTCACCCTCTATG
GAGCGCACGGGAGAATCAATTCATTTATCCACTGTCACTTACAACCCCCCCAATCGTTTTTATTC
TCAATAGGTTCCGGTTCTCAATAGCCAATAGGTTTTCTTCCCAAT
Found at i:887763 original size:33 final size:32
Alignment explanation
Indices: 887721--887827 Score: 127
Period size: 33 Copynumber: 3.5 Consensus size: 32
887711 TGCTCGACCA
887721 CCGCCATCAATGAAAATCGCTCGGCTGATAAGG
1 CCGCCATCAATGAAAATCGCTC-GCTGATAAGG
* **
887754 CCGCCATCAATG-AAATTGCT--C-GACCA--
1 CCGCCATCAATGAAAATCGCTCGCTGATAAGG
887780 CCGCCATCAATGAAAATCGCTCGACTGATAAGG
1 CCGCCATCAATGAAAATCGCTCG-CTGATAAGG
887813 CCGCCATCAATGAAA
1 CCGCCATCAATGAAA
887828 TTGCTCGACC
Statistics
Matches: 61, Mismatches: 6, Indels: 14
0.75 0.07 0.17
Matches are distributed among these distances:
26 12 0.20
27 7 0.11
28 3 0.05
29 1 0.02
30 1 0.02
31 3 0.05
32 7 0.11
33 27 0.44
ACGTcount: A:0.33, C:0.30, G:0.20, T:0.18
Consensus pattern (32 bp):
CCGCCATCAATGAAAATCGCTCGCTGATAAGG
Left flanking sequence: Indices 887221 -- 887720
AGCCAATAGGTTTTCTTCCCAATAGGATACTTCGTTACAAGAGACTTCGTTACATCGGCTCTCCA
GGCTACCTACCCAGGCGAGGGAAAGGCTATCCAGTTACTAAATATATATTTTCCATTTCCTTATA
GGCTATATTATAATAGTAGGGATTGACATTGGCTATGTATAAGTGGTCAATAAGAATATCCTTCC
GACATGGAAACTGAAGAAAGGATAGAGCAAGACGACTGGTTCTTAAATCTCCGAGATGATTCTCA
CTTTCCCGCTTATTCTTGGATTGGCTTGTTCCTCAGCTCATAATGAAAGTGAGCCTATTATGAAT
TGCCCTAATATTATGATTTAAGGCGATTGGTCCCTTTATCCACTCCTCAAAGGCCCCACTTGTCT
TATCAGTAAAGCGTCCCCTTCTCCATTTCAAAGAAAGCAGCTAGCAGCTTGTTTCCCGCGGGTTG
AGCTGTGAAGAGAGCTAAGAATAGAGGAATGAAATTGCTCGACCA
Right flanking sequence: Indices 887828 -- 888327
TTGCTCGACCACCGCCATCAAATCCGATCATTGTTTTATAATCGTGAACCGGCCTTCATCCAACT
CGCCAAGCTAATGCGATCCATGGACTGACTGGCAGCCAATCCACTACTGCTGGGACTTCATACTG
GCCCTAAGGACCATGTCTCCCGCAGTTGCCCGCAGTACATGGGGCACTCATGGCATTAATCCATA
TCTATAGGTAGGCCTCTGAATAGGCGTTGATCGGGCAAGCAGCGCGCCCTATTATTCTTATGGGC
CCTAAACTGACTAATTAATTAATGAAATGACTAGTTCCATTACTAGTATTTTCCCAGCCAGCCCA
GGCATACCAGTTTCCTTCCCCGGGGGCTACTAACTATGGTTGGTACGGCAAGCGATGGATGCGTA
CTGAGTATTTGTAGCCCCTGCCTGGCACAACCAACATCAATAATAATAAGAATAGGGAGGGGCCG
GCCGCTGCCCATGAACTCATTCCTTAGGCTGAGGAAATTGATCGG
Found at i:887790 original size:26 final size:26
Alignment explanation
Indices: 887703--887848 Score: 121
Period size: 26 Copynumber: 5.1 Consensus size: 26
887693 AGAATAGAGG
887703 AATGAAATTGCTCGACCACCGCCATC
1 AATGAAATTGCTCGACCACCGCCATC
* **
887729 AATGAAAATCGCTCGGCTGATAAGGCCGCCATC
1 AATG-AAATTGCT---C-GACCA--CCGCCATC
887762 AATGAAATTGCTCGACCACCGCCATC
1 AATGAAATTGCTCGACCACCGCCATC
* *
887788 AATGAAAATCGCTCGACTGATAAGGCCGCCATC
1 AATG-AAATTGCTCGAC----CA--CCGCCATC
887821 AATGAAATTGCTCGACCACCGCCATC
1 AATGAAATTGCTCGACCACCGCCATC
887847 AA
1 AA
887849 ATCCGATCAT
Statistics
Matches: 96, Mismatches: 10, Indels: 28
0.72 0.07 0.21
Matches are distributed among these distances:
26 26 0.27
27 18 0.19
28 4 0.04
29 1 0.01
30 1 0.01
31 4 0.04
32 18 0.19
33 24 0.25
ACGTcount: A:0.32, C:0.31, G:0.18, T:0.18
Consensus pattern (26 bp):
AATGAAATTGCTCGACCACCGCCATC
Left flanking sequence: Indices 887203 -- 887702
TAGGTTCCGGTTCTCAATAGCCAATAGGTTTTCTTCCCAATAGGATACTTCGTTACAAGAGACTT
CGTTACATCGGCTCTCCAGGCTACCTACCCAGGCGAGGGAAAGGCTATCCAGTTACTAAATATAT
ATTTTCCATTTCCTTATAGGCTATATTATAATAGTAGGGATTGACATTGGCTATGTATAAGTGGT
CAATAAGAATATCCTTCCGACATGGAAACTGAAGAAAGGATAGAGCAAGACGACTGGTTCTTAAA
TCTCCGAGATGATTCTCACTTTCCCGCTTATTCTTGGATTGGCTTGTTCCTCAGCTCATAATGAA
AGTGAGCCTATTATGAATTGCCCTAATATTATGATTTAAGGCGATTGGTCCCTTTATCCACTCCT
CAAAGGCCCCACTTGTCTTATCAGTAAAGCGTCCCCTTCTCCATTTCAAAGAAAGCAGCTAGCAG
CTTGTTTCCCGCGGGTTGAGCTGTGAAGAGAGCTAAGAATAGAGG
Right flanking sequence: Indices 887849 -- 888348
ATCCGATCATTGTTTTATAATCGTGAACCGGCCTTCATCCAACTCGCCAAGCTAATGCGATCCAT
GGACTGACTGGCAGCCAATCCACTACTGCTGGGACTTCATACTGGCCCTAAGGACCATGTCTCCC
GCAGTTGCCCGCAGTACATGGGGCACTCATGGCATTAATCCATATCTATAGGTAGGCCTCTGAAT
AGGCGTTGATCGGGCAAGCAGCGCGCCCTATTATTCTTATGGGCCCTAAACTGACTAATTAATTA
ATGAAATGACTAGTTCCATTACTAGTATTTTCCCAGCCAGCCCAGGCATACCAGTTTCCTTCCCC
GGGGGCTACTAACTATGGTTGGTACGGCAAGCGATGGATGCGTACTGAGTATTTGTAGCCCCTGC
CTGGCACAACCAACATCAATAATAATAAGAATAGGGAGGGGCCGGCCGCTGCCCATGAACTCATT
CCTTAGGCTGAGGAAATTGATCGGACTGGCCTATTGATCGTGTTC
Found at i:887795 original size:59 final size:59
Alignment explanation
Indices: 887703--887848 Score: 283
Period size: 59 Copynumber: 2.5 Consensus size: 59
887693 AGAATAGAGG
*
887703 AATGAAATTGCTCGACCACCGCCATCAATGAAAATCGCTCGGCTGATAAGGCCGCCATC
1 AATGAAATTGCTCGACCACCGCCATCAATGAAAATCGCTCGACTGATAAGGCCGCCATC
887762 AATGAAATTGCTCGACCACCGCCATCAATGAAAATCGCTCGACTGATAAGGCCGCCATC
1 AATGAAATTGCTCGACCACCGCCATCAATGAAAATCGCTCGACTGATAAGGCCGCCATC
887821 AATGAAATTGCTCGACCACCGCCATCAA
1 AATGAAATTGCTCGACCACCGCCATCAA
887849 ATCCGATCAT
Statistics
Matches: 86, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
59 86 1.00
ACGTcount: A:0.32, C:0.31, G:0.18, T:0.18
Consensus pattern (59 bp):
AATGAAATTGCTCGACCACCGCCATCAATGAAAATCGCTCGACTGATAAGGCCGCCATC
Left flanking sequence: Indices 887203 -- 887702
TAGGTTCCGGTTCTCAATAGCCAATAGGTTTTCTTCCCAATAGGATACTTCGTTACAAGAGACTT
CGTTACATCGGCTCTCCAGGCTACCTACCCAGGCGAGGGAAAGGCTATCCAGTTACTAAATATAT
ATTTTCCATTTCCTTATAGGCTATATTATAATAGTAGGGATTGACATTGGCTATGTATAAGTGGT
CAATAAGAATATCCTTCCGACATGGAAACTGAAGAAAGGATAGAGCAAGACGACTGGTTCTTAAA
TCTCCGAGATGATTCTCACTTTCCCGCTTATTCTTGGATTGGCTTGTTCCTCAGCTCATAATGAA
AGTGAGCCTATTATGAATTGCCCTAATATTATGATTTAAGGCGATTGGTCCCTTTATCCACTCCT
CAAAGGCCCCACTTGTCTTATCAGTAAAGCGTCCCCTTCTCCATTTCAAAGAAAGCAGCTAGCAG
CTTGTTTCCCGCGGGTTGAGCTGTGAAGAGAGCTAAGAATAGAGG
Right flanking sequence: Indices 887849 -- 888348
ATCCGATCATTGTTTTATAATCGTGAACCGGCCTTCATCCAACTCGCCAAGCTAATGCGATCCAT
GGACTGACTGGCAGCCAATCCACTACTGCTGGGACTTCATACTGGCCCTAAGGACCATGTCTCCC
GCAGTTGCCCGCAGTACATGGGGCACTCATGGCATTAATCCATATCTATAGGTAGGCCTCTGAAT
AGGCGTTGATCGGGCAAGCAGCGCGCCCTATTATTCTTATGGGCCCTAAACTGACTAATTAATTA
ATGAAATGACTAGTTCCATTACTAGTATTTTCCCAGCCAGCCCAGGCATACCAGTTTCCTTCCCC
GGGGGCTACTAACTATGGTTGGTACGGCAAGCGATGGATGCGTACTGAGTATTTGTAGCCCCTGC
CTGGCACAACCAACATCAATAATAATAAGAATAGGGAGGGGCCGGCCGCTGCCCATGAACTCATT
CCTTAGGCTGAGGAAATTGATCGGACTGGCCTATTGATCGTGTTC
Found at i:888843 original size:21 final size:21
Alignment explanation
Indices: 888812--888867 Score: 85
Period size: 21 Copynumber: 2.7 Consensus size: 21
888802 GCAGGACCTT
*
888812 AATACGTGTAGCCTAGCTTTC
1 AATACGCGTAGCCTAGCTTTC
*
888833 AATATGCGTAGCCTAGCTTTC
1 AATACGCGTAGCCTAGCTTTC
*
888854 AATACGTGTAGCCT
1 AATACGCGTAGCCT
888868 CATATTTGTT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.25, C:0.23, G:0.20, T:0.32
Consensus pattern (21 bp):
AATACGCGTAGCCTAGCTTTC
Left flanking sequence: Indices 888312 -- 888811
TGAGGAAATTGATCGGACTGGCCTATTGATCGTGTTCAGTTTAAGGGGTTCCGTGTGTTCGGGTG
GGCATGGGAATGAATCGAAGTAGGCAAATGAATCTTCCCACTCCTGTGTGTGCCTGCCTTCTCAC
TCCAAGAAAGAAGCAATCCCGGCACCTGGGTTTACTTACTTGGCTTGGAGGGGGGTCTAGTTTGT
GGGGAAATGCATTAAGTGACTCATCGGGCTGGCCTCTCTGGCTTGCTTGGCAACGAACGGGACCC
CCTCCTATCAATCGGTAAGAAGTAGGCGTGCCCAAGCAAGAATCATTAAGTACTCTGCCTCTTAC
TTATGAGCATGCCACTTATATCCTTGGCTAGGCAGGCGCACGTGCAACCCTCCCTCTGATTGATA
CAAGCAGACATGCCTCCTTATCATCCCAACCCCGATATATGCCTGGCCAGAATGCCATCGGCCAT
AGCCCTTCCCTGGCCCCTCTGCTTTCCCAAGAAGGGCAGGACCTT
Right flanking sequence: Indices 888868 -- 889367
CATATTTGTTCCCCTCAAAGAGATAGCGAATGTAATACCAGGTCCTGAAAGACTCTTTCTTCCCC
TCAAATCAAAGAGCTAGGTATAGATAGAATGAGATATCTCTTTGTATATGATATTATGGAAAGAT
TAGGTGATGCTAAAGCGCAATTACATATATAATATATGCAAGGTAGCCTAAGGTAGTTCAGATGG
AGGCACACGGCTAACCAAGTTTAGGCAGTGTTTATGATGGCTATAGGTTGTCAGTGCTTTCCTAG
GCGAGATATCCCACGCCTCTCCTAGGCGATATAGCGTACCAGCCCACCATGTCTAGAGTAAGGCA
GTGCTTTATTCCTCCCTAAGAGTTACCAAGTACGAGGGGCAGTCACCTTTCTACCAACCTTCTTA
TCACACATATTCTTACCCACCACCTTCCTACCTATGAAGAACCTACCCTTCTTTTGTTACCCACC
CTCCCTCGAATATCTTGATCGAAACTTCCGCATTCGACGCTTGGT
Found at i:901746 original size:13 final size:13
Alignment explanation
Indices: 901728--901755 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
901718 TGAAAAGATC
901728 ATAATGGGTCGAA
1 ATAATGGGTCGAA
901741 ATAATGGGTCGAA
1 ATAATGGGTCGAA
901754 AT
1 AT
901756 GTCATAATGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.39, C:0.07, G:0.29, T:0.25
Consensus pattern (13 bp):
ATAATGGGTCGAA
Left flanking sequence: Indices 901228 -- 901727
GGAGGGGGGTTGCCGAACAATACGTTTGCCCCTGAAACCAATACGTAGTGGTTTCAGAAAAGATA
TATTATATACGCTACATGGCATAAGGCCTTTCAATCCAATATCGACCCACCTGGAGAGATATCAG
GGGCTGATACACCATAAGGATGCTACAGCAGGCTCGACCATAGGGGCCGGGAGCCTAAGAAAGAG
GAGGTCTGTTAGGTTATTTCATATAAACAAAGGTAGGTGAGAGGGGGCCCAGTTCTATAAGTCAC
GTAGTCGCTTGCTCGACAAAAGGAGAGCAAGGTGATTCGATCCATCATCAATTTCCATACCATGG
GAGATGGGGGTTAGGAGACCAGATGGGGGCCTTTGTCCGGTTTTTCGTTTCTTTTGTCAGGTTTG
AAAGGTAGAGGTGCGATTCAAAACAAAGAAAAGAAGGGGGAGGTGATGGCATAATGACATATATA
ATTATACGCTGAATTACCGCTCCTACGACATGAAGTGAAAAGATC
Right flanking sequence: Indices 901756 -- 902255
GTCATAATGACTGCGAGAATTCTATCGAAAACATTCTCGAAGAATATCGTATACAAACGAAATCT
ATCTTGATCTCTCCATCCTATTCCTACGAAGATGGATATGAAAGGAACGAGCGAGACCATAACTC
GATTCATCAATGAATGAAACGACAAAACGAAGTGGATGCTCATACATAATGATATGAGCCATATT
CCTCTCCTTATCAGTCGAGCCCCCTGTCGGGTCCTTGCTTGACGTTAGGAAAGCAAGGAACGTAG
TGCTTGCTTGACGTTAGGAAAGCAAGGAACGTATCCAGGCAAGCGGTAGCGATCATTCCCAATCC
AGGCAAGCGGTAGCGATCATCAAAATGGGGGGGCGTATGGAGACGTATCTATAAAGGAGGGGTAT
CATTCAGTATAAACCTCGCATGCAGGGTATAAACTACTTGGCCTCAAATACTGGCAATGGAGTAG
CATCATAATAGAACAACCACCCAAATCTAACATCAAGCAGGGCGA
Found at i:902025 original size:34 final size:34
Alignment explanation
Indices: 901984--902048 Score: 130
Period size: 34 Copynumber: 1.9 Consensus size: 34
901974 CTGTCGGGTC
901984 CTTGCTTGACGTTAGGAAAGCAAGGAACGTAGTG
1 CTTGCTTGACGTTAGGAAAGCAAGGAACGTAGTG
902018 CTTGCTTGACGTTAGGAAAGCAAGGAACGTA
1 CTTGCTTGACGTTAGGAAAGCAAGGAACGTA
902049 TCCAGGCAAG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 31 1.00
ACGTcount: A:0.31, C:0.15, G:0.31, T:0.23
Consensus pattern (34 bp):
CTTGCTTGACGTTAGGAAAGCAAGGAACGTAGTG
Left flanking sequence: Indices 901484 -- 901983
TCACGTAGTCGCTTGCTCGACAAAAGGAGAGCAAGGTGATTCGATCCATCATCAATTTCCATACC
ATGGGAGATGGGGGTTAGGAGACCAGATGGGGGCCTTTGTCCGGTTTTTCGTTTCTTTTGTCAGG
TTTGAAAGGTAGAGGTGCGATTCAAAACAAAGAAAAGAAGGGGGAGGTGATGGCATAATGACATA
TATAATTATACGCTGAATTACCGCTCCTACGACATGAAGTGAAAAGATCATAATGGGTCGAAATA
ATGGGTCGAAATGTCATAATGACTGCGAGAATTCTATCGAAAACATTCTCGAAGAATATCGTATA
CAAACGAAATCTATCTTGATCTCTCCATCCTATTCCTACGAAGATGGATATGAAAGGAACGAGCG
AGACCATAACTCGATTCATCAATGAATGAAACGACAAAACGAAGTGGATGCTCATACATAATGAT
ATGAGCCATATTCCTCTCCTTATCAGTCGAGCCCCCTGTCGGGTC
Right flanking sequence: Indices 902049 -- 902548
TCCAGGCAAGCGGTAGCGATCATTCCCAATCCAGGCAAGCGGTAGCGATCATCAAAATGGGGGGG
CGTATGGAGACGTATCTATAAAGGAGGGGTATCATTCAGTATAAACCTCGCATGCAGGGTATAAA
CTACTTGGCCTCAAATACTGGCAATGGAGTAGCATCATAATAGAACAACCACCCAAATCTAACAT
CAAGCAGGGCGAGTGAAAGGGTAGAAGTTGAAAGGGTAAAGGAATGCGGACATAATGCGAACAGA
AAGCTAACTGACTGAATGGGTCATGGTCGGGCAAATGCATATCTAGAGAAAGGCGAACTGAATGC
GAACAGAATGAACAGAAAGGGACAAACAGAAAGCTCAGCTCACAGAATACGGACTGAATGCGGAC
ATAAAGCATACATAAAGCGTACATCATACGGACATCAGAAAGCGAACATCCTCCAATGGCTAACA
TAAAGCGGCTGTCAAGGGGAAGTCAAGGGGACTGGTAGGATTGAT
Found at i:902636 original size:19 final size:18
Alignment explanation
Indices: 902612--902648 Score: 65
Period size: 19 Copynumber: 2.0 Consensus size: 18
902602 TTCAAGGGTA
902612 GGAAGTCAAGGGTGAGTTC
1 GGAAGTCAAGGGTG-GTTC
902631 GGAAGTCAAGGGTGGTTC
1 GGAAGTCAAGGGTGGTTC
902649 ATGGAATCGG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 4 0.22
19 14 0.78
ACGTcount: A:0.24, C:0.11, G:0.43, T:0.22
Consensus pattern (18 bp):
GGAAGTCAAGGGTGGTTC
Left flanking sequence: Indices 902112 -- 902611
GGCGTATGGAGACGTATCTATAAAGGAGGGGTATCATTCAGTATAAACCTCGCATGCAGGGTATA
AACTACTTGGCCTCAAATACTGGCAATGGAGTAGCATCATAATAGAACAACCACCCAAATCTAAC
ATCAAGCAGGGCGAGTGAAAGGGTAGAAGTTGAAAGGGTAAAGGAATGCGGACATAATGCGAACA
GAAAGCTAACTGACTGAATGGGTCATGGTCGGGCAAATGCATATCTAGAGAAAGGCGAACTGAAT
GCGAACAGAATGAACAGAAAGGGACAAACAGAAAGCTCAGCTCACAGAATACGGACTGAATGCGG
ACATAAAGCATACATAAAGCGTACATCATACGGACATCAGAAAGCGAACATCCTCCAATGGCTAA
CATAAAGCGGCTGTCAAGGGGAAGTCAAGGGGACTGGTAGGATTGATAGGATCATTCAAGAGGTT
GAAGAAGGGAAGGTTCAATCGGAAGTCAAGGGTAGTTCAAGGGTA
Right flanking sequence: Indices 902649 -- 903148
ATGGAATCGGTTACCTAACTCAAACGACTTGGCTTATTTGGTCCCAATTTCATTGTCCGCTCCTG
TACGGCCAGCTGGCATAAGTGTAATAATCAAATCAGTATGGGTGACTTCACTCAAACGACTGTGT
TTCTTCCCCCATCATACTATAAGTACTGTGCTTGTTCCCAAACCATCCTCGAAAGACTGTGCTTC
TTTTTTCCTCACCATACTATAGAGACTACTGTGCTTTTTCTTCCCCCCCAACCCCCGCTCTGTTT
CGCTCAGCTTCGATCATCTATCTTTCATCGTAGGTAAAGGTTCGATCGGAGGATAAGGTGGGTTC
GTTTCATCGGTGACCCCTCACCTAATGCGACTTGGCTTCTTCGGTGCTCTCCCATTGGCGGTTCC
TCAACGGCCGGCATAAGTGTAAGAACCAAAATCAGTATCGTTGGTTGATGGACTTGGTGCGGCTA
CCCACCTAACTCCTCTCAAACGACTTGGGTTCTTCCGGTCTGGTT
Found at i:903961 original size:16 final size:16
Alignment explanation
Indices: 903942--903980 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 16
903932 TGTTTGGGGG
903942 GAATGCGGTAATG-GTA
1 GAATGCGGTAATGAG-A
*
903958 GAATGCAGTAATGAGA
1 GAATGCGGTAATGAGA
903974 GAATGCG
1 GAATGCG
903981 TACTGGGCCA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
16 19 0.95
17 1 0.05
ACGTcount: A:0.36, C:0.08, G:0.36, T:0.21
Consensus pattern (16 bp):
GAATGCGGTAATGAGA
Left flanking sequence: Indices 903442 -- 903941
CCCTGTCGGGTCCTGATTGCATTATATACGTGAAAACACACAATCACAATAAGCAAAGGCACCAC
CCACCGTAACCTATTCCAATCAATCTCATCAATTACTCCTCCTAATCGGTGACCCAGCTCAAACA
CTCGGGATGGGAGACGTCTATAAAAAGCATAAGTTGAAACTCCTCAATAAATTGCTGGTGGTATG
GGTTGGGATGAGTTCCATCATAGATTCTGTCAGTTGATCGATGCCTGTATTTCCCTTCATTTCTG
TCTTACGTACGAGAAAGGTAAAAGGAATATTAGGGAAACGAAGGCGAGTGAACCCCCCGGTAGAC
TAAGAGCCAGGGGTGAGCGTAGACCTGTAGTATTCCCGGCTCGTGGTAATTTCCCATCTTGTTTG
TAGTCCGATAGGTGGAGTTATAGATCGAGGTGTAGGTTCTAGGTTTGGCATGCTGCTATCCTGTT
TGTCTACCTGGTACTTCTTGTCAATGCGGGATAATTGTTTGGGGG
Right flanking sequence: Indices 903981 -- 904480
TACTGGGCCATCCTGGGTTGTACTGGGCGGACTGACTATGGCGAACGGAAAGCGGGAATGGGTGA
ACAGCAAGAACAGCAATAAAAGAAAGAAAAGCATGGGTGAATTGAAAGCGGGAAAGCGGATTGAA
GTAAAGCGGACTGGATACTGGTTAATACGGATTGAAGAATGCTGATAGTCTTGGGCGAGGTAATG
CGTTATTGGGTCCTGAAAGCGTCCTGGGCTCCCTGATTGACTGGAAGCGTAATGGGCTGGGTAAT
GGGACTGAATACGAACTGAATGGCGGGGGGATGCGTGTATGCGTTAATGGTAATGCGTGGGTAGA
ATGGCGGGATGTGGGAATATGGGAGAATGCGGACTTGAGAATGCTGGGTAATCCGGGACTGGGAG
AAAGCGAGAAGGGCGTATTGGGAATGGCGGGGGGATTTTTGAATGCGGGCCTGGGTAATGTGATA
ATGGGAGAATGCGGATTTAACATAAAGCGGACGGAAAGCGGACTG
Found at i:904982 original size:13 final size:13
Alignment explanation
Indices: 904966--904999 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
904956 CAACCTTGAC
904966 CCTACACCCTCAA
1 CCTACACCCTCAA
*
904979 CCTACACCCTCGA
1 CCTACACCCTCAA
904992 CCTACACC
1 CCTACACC
905000 TAAAACTCGA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.26, C:0.56, G:0.03, T:0.15
Consensus pattern (13 bp):
CCTACACCCTCAA
Left flanking sequence: Indices 904466 -- 904965
ACGGAAAGCGGACTGTGGATCTGGGGAACGCCTTTCTTGACAGAAGGTTCAGTTTCCCAGGTTGC
ATTAGATATGTTATTATACACCAGCTTATAAACTGATAAAAAGCAGGTTTTAAGTAAGCATGGTT
CCGAGATATGGGAGGGGGGCTCCAAAACCTAAAAAAGGACATCCTCCAAGAATCAATAATCTATC
GGTTCCAAAACATCCAATAAGGCATCGCCACCTGGCTCGACTACCGAAGACACATCTCAGGGCCA
GGAAGGTCCCGAAGGGGCTTGCGCTTCCTAGTGCAAGGACCCTTTAGGGTGCTCGACTGATAAGG
AGAGGAGGTGGTCGTTTTTTTTGTAGCCCATTGCCAATATACAAGTATATAGCCTACTCCCATGT
TTCTTTGCCAATAGCCCATAGCCCAGTTGTCGTTGCCAAACAGTCATAGCCAGTCTCATTGAAAA
GAGGAGGTGGTCACGGAACCATATACCTCTGCCCTCAACCTTGAC
Right flanking sequence: Indices 905000 -- 905499
TAAAACTCGACGGAGGAAGGAACCCCATAGCCCTAAACTAGAAACCCTCTATATCCTCGAACCCC
TCACCCTTGAACTTCTACACCTCACAAAACTGAGAATTGCCGGGAGGTCATTGCTAGCCGATAAG
CCGAGAAACAATCATTGTTGATAGCCACTGATAAGGTTTGTGCACAGGTTTGTGTCCATACATTC
TTGGTACTCGCTGCTGGCACTTGATTCGGGCCAGGTGTAAATGCTGCTACTCAATGCTGCTAGTT
GAGCCACTCGATGTTGGTACTCAATAAAGTCAATGCCAGGTTTCAATTCATGCTGCTGGTACTCC
ATGCCGGTACTCCATGTCAGGATTCGATGTATTCTCTTGTAGGTTTTGGAACCAATGGAGGATGC
CTTCTTATTGGATGTATTCTTGTCTTTTTTGGGGATGTCTTATCATAGGTTTTGGAACCGATGCA
CGATGCTTACGATTCACCTGTCGAAGATAGGATCGTGTGACAGAC
Found at i:906642 original size:36 final size:35
Alignment explanation
Indices: 906587--906656 Score: 122
Period size: 36 Copynumber: 2.0 Consensus size: 35
906577 TCCAATGGGA
*
906587 GGAATAAGCAATGGGAATCCATGGGAGCTCTAATG
1 GGAATAAGCAATGGGAATCCATGGAAGCTCTAATG
906622 GGAATAAGCCAATGGGAATCCATGGAAGCTCTAAT
1 GGAATAAG-CAATGGGAATCCATGGAAGCTCTAAT
906657 CCGCTATAAT
Statistics
Matches: 33, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
35 8 0.24
36 25 0.76
ACGTcount: A:0.36, C:0.16, G:0.29, T:0.20
Consensus pattern (35 bp):
GGAATAAGCAATGGGAATCCATGGAAGCTCTAATG
Left flanking sequence: Indices 906087 -- 906586
ATTCAGTACGCGTTCAGTTCAATCCGCAACTGCCAACATATTCGGGGGTGGGTTGGCATCCTCAT
GAAGTTGATCTATAATGAAGTCGCAGGATGGAATCGATTGCTGGGCGGGGATACTCAACTGGGAT
CTAATACACCGGGCTTGGCTAATAATTGGACGATGCAATCCGATGATACAATACGCTAGGCCTAC
TCAACTGGGCTACTCCGCTTCGATACCCGGCTGCTCAAATTGGATTGGCTTAAGTTCTTCGCTGA
CGCTCAGGGATAAAGGTCCCGGAGGGGCTTGCGCTTCCTAGTGCAAGGAAGGGGACTTAGTTTCA
AATGAAAAGAATGGAGACTTTCACTTGGCTTTCACTCTCTATGGCCTTAGTAGGGCATGGGACTA
ATGGTAGTTCTTAGTGCATGTGGGGACTACAGCTACTCTACAGACTACAGCTAATAGTATTGAGT
GCCAGCAGTGATCCAATGGAATAATCCGCAGGTGATCCAATGGGA
Right flanking sequence: Indices 906657 -- 907156
CCGCTATAATCCAATGGTAGGGCCTAATCACAGGGGGCTACTCAATGGGGGGGATACTCGATGCT
GTCGATCCTAGAGTTGATGCACTTGATGCTGGTAGTCTTAGTCCAGGCCACGTGGAGATGCCAAG
AGTTTATCCCAGTGATTTAGAGGTTTCTTTCTCGCCTACCAAGTTTGGCGAAGGCACTAAGTTTG
CTTCGAACAGATATTAGAAAACCGCCTCATTCACCTTGCTTTCCTAACGTCAAGCAAGCCCCTAC
CGGTCCTTGCCCGATGCGGACAAGCGACTACGTTGATGGCGGCCCCCTTGTCGAGAGTTCGATTC
CTCACCCATATGAATCGGTGAGTCCCTACCGGGCCTCTCCTACTGTCGAGAGTTCGGCTGGCTCA
CCCTCACCCTTTTTTTTCATTAATGAAATTGCTCCCTTTGAGGGGACAAGAATGAAATGGATTTT
CTCTTCAATGAAATAGGCTCTTTCAATTTGTTTCTCTATGAGAAC
Found at i:910077 original size:62 final size:62
Alignment explanation
Indices: 910010--910133 Score: 248
Period size: 62 Copynumber: 2.0 Consensus size: 62
910000 GCTTCGCACC
910010 TTGCCCGATGCGGACAAGCAGGTAAACCTCCTTGCCTTCCTATTTCTTCTCTGGCGGCTTCG
1 TTGCCCGATGCGGACAAGCAGGTAAACCTCCTTGCCTTCCTATTTCTTCTCTGGCGGCTTCG
910072 TTGCCCGATGCGGACAAGCAGGTAAACCTCCTTGCCTTCCTATTTCTTCTCTGGCGGCTTCG
1 TTGCCCGATGCGGACAAGCAGGTAAACCTCCTTGCCTTCCTATTTCTTCTCTGGCGGCTTCG
910134 CACCTTGCTT
Statistics
Matches: 62, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
62 62 1.00
ACGTcount: A:0.15, C:0.32, G:0.23, T:0.31
Consensus pattern (62 bp):
TTGCCCGATGCGGACAAGCAGGTAAACCTCCTTGCCTTCCTATTTCTTCTCTGGCGGCTTCG
Left flanking sequence: Indices 909510 -- 910009
CTTAACATCACATCACTACCTGCCCTTAACCGAGGGAAGTGGGAAAGCATGGGCCAAACATCCAG
TACGTCACATGACTACTATATCGGGTGGGAGTGAACAAAGGATGGTAACAGTAAATGAAGGAGCC
GGGTAACCGGTTGAACGAACAACTATAGGAGATGGGGAATTGAATTCCTTCCTATGCTTTTATTA
GACTGCAACTACCAGCACGCTCAAACCAAAGCCCTATCCTCTATCTCTACTTGAGACCTTTCCGT
CTATCTAGCCCGTCTCTCTCTCTCTTGCTGCCCGGCTTTCTGATCTCTCCCTCCTCAACCTTTGC
ACCCGTATCACAGTTCACCCGTACCAATCGTAGTTTCCAACAGTGCATGGAACCTATTACCTACC
TGTATCATCAATCTCTCCCTCCCTCCCTCTCTTCCTTTTCCTCCCTTCCTTGCCCGGTGCGGACA
AGCAATAAATTACCTTGCCCCCGGAGGGACAAGCGGCTTCGCACC
Right flanking sequence: Indices 910134 -- 910633
CACCTTGCTTTCCTAACGTCAAGCAAGCAAGAAATTCCTTGCACTAGGAAGCGCAAGCCCCTCCG
GGTCCTCTCCCGGTGGTCGAGCAACTAAAGTTCCTTGCTTTCCTAACGTCAAGCAAGCCCTGCCG
GACCTTGCCCGATGCGGACAAGCAGGTAAACCTCCTTGCCTTCCTATTTCTTCTCTGGCGGCTTC
GCACCTTGCTTTCCTAACGTCAAGCAAGCAAGAAATTCCTTGCACTAGGAAGCGCAAGCCCCTCC
GGGTCCTCTCCCGGTGGTCGAGCAACTAAAGTTCCTTGCTTTCCTAACGTCAAGCAAGCCCTGCC
GGACCTTGCCCGATGCGGACAAGCAGGTAAACCTCCTTGCCTTCCTATTTCTTCTCTGGCGGCTT
CGCACCTTGCTTTCCTAACGTCAAGCAAGCAAGAAATTCCTTGCACTAGGAAGCGCAAGCCCCTC
CGGGTCCTCTCCCGGTGGTCGAGCAACTAAAGTTCCTTGCTTTCC
Found at i:910286 original size:95 final size:95
Alignment explanation
Indices: 910187--910874 Score: 257
Period size: 95 Copynumber: 7.1 Consensus size: 95
910177 CTAGGAAGCG
910187 CAAGCCCCTCCGGGTCCTCTCCCGGTGGTCGAGCAACTAAAGTTCCTTGCTTTCCTAACGTCAAG
1 CAAGCCCCTCCGGGTCCTCTCCCGGTGGTCGAGCAACTAAAGTTCCTTGCTTTCCTAACGTCAAG
910252 CAAGCCCTGCCGGACCTTGCCCGATGCGGA
66 CAAGCCCTGCCGGACCTTGCCCGATGCGGA
* ** *** ** ** ** **
910282 CAAGCAGGTAAACCTCCTTG-CCT-TCCTATTTCTTCTCTG-GCGGCT-TCGCACCTTGCTTTCC
1 CAAGC------CCCTCCGGGTCCTCTCC---CGGTGGTC-GAGCAACTAAAGTTCCTTGCTTTCC
** ***** * *
910343 TAACGTCAAGCAAG-CAAGAAATTCCTTGCACTAGGAAGC-G-
56 TAACGTCAAGCAAGCCCTGCCGGACCTTGC-C--CGATGCGGA
910383 CAAGCCCCTCCGGGTCCTCTCCCGGTGGTCGAGCAACTAAAGTTCCTTGCTTTCCTAACGTCAAG
1 CAAGCCCCTCCGGGTCCTCTCCCGGTGGTCGAGCAACTAAAGTTCCTTGCTTTCCTAACGTCAAG
910448 CAAGCCCTGCCGGACCTTGCCCGATGCGGA
66 CAAGCCCTGCCGGACCTTGCCCGATGCGGA
* ** *** ** ** ** **
910478 CAAGCAGGTAAACCTCCTTG-CCT-TCCTATTTCTTCTCTG-GCGGCT-TCGCACCTTGCTTTCC
1 CAAGC------CCCTCCGGGTCCTCTCC---CGGTGGTC-GAGCAACTAAAGTTCCTTGCTTTCC
** ***** * *
910539 TAACGTCAAGCAAG-CAAGAAATTCCTTGCACTAGGAAGC-G-
56 TAACGTCAAGCAAGCCCTGCCGGACCTTGC-C--CGATGCGGA
910579 CAAGCCCCTCCGGGTCCTCTCCCGGTGGTCGAGCAACTAAAGTTCCTTGCTTTCCTAACGTCAAG
1 CAAGCCCCTCCGGGTCCTCTCCCGGTGGTCGAGCAACTAAAGTTCCTTGCTTTCCTAACGTCAAG
910644 CAAGCCCTGCCGGACCTTGCCCGATGCGGA
66 CAAGCCCTGCCGGACCTTGCCCGATGCGGA
* ** *** ** ** ** **
910674 CAAGCAGGTAAACCTCCTTG-CCT-TCCTATTTCTTCTCTG-GCGGCT-TCGCACCTTGCTTTCC
1 CAAGC------CCCTCCGGGTCCTCTCC---CGGTGGTC-GAGCAACTAAAGTTCCTTGCTTTCC
** ***** * *
910735 TAACGTCAAGCAAG-CAAGAAATTCCTTGCACTAGGAAGC-G-
56 TAACGTCAAGCAAGCCCTGCCGGACCTTGC-C--CGATGCGGA
910775 CAAGCCCCTCCGGGTCCTCTCCCGGTGGTCGAGCAACTAAAGTTCCTTGCTTTCCTAACGTCAAG
1 CAAGCCCCTCCGGGTCCTCTCCCGGTGGTCGAGCAACTAAAGTTCCTTGCTTTCCTAACGTCAAG
910840 CAAGCCCTGCCGGACCTTGCCCGATGCGGA
66 CAAGCCCTGCCGGACCTTGCCCGATGCGGA
910870 CAAGC
1 CAAGC
910875 AGGTAAACCT
Statistics
Matches: 395, Mismatches: 138, Indels: 120
0.60 0.21 0.18
Matches are distributed among these distances:
93 15 0.04
94 24 0.06
95 119 0.30
96 33 0.08
97 9 0.02
99 9 0.02
100 33 0.08
101 114 0.29
102 24 0.06
103 15 0.04
ACGTcount: A:0.20, C:0.34, G:0.22, T:0.24
Consensus pattern (95 bp):
CAAGCCCCTCCGGGTCCTCTCCCGGTGGTCGAGCAACTAAAGTTCCTTGCTTTCCTAACGTCAAG
CAAGCCCTGCCGGACCTTGCCCGATGCGGA
Left flanking sequence: Indices 909687 -- 910186
CTTCCTATGCTTTTATTAGACTGCAACTACCAGCACGCTCAAACCAAAGCCCTATCCTCTATCTC
TACTTGAGACCTTTCCGTCTATCTAGCCCGTCTCTCTCTCTCTTGCTGCCCGGCTTTCTGATCTC
TCCCTCCTCAACCTTTGCACCCGTATCACAGTTCACCCGTACCAATCGTAGTTTCCAACAGTGCA
TGGAACCTATTACCTACCTGTATCATCAATCTCTCCCTCCCTCCCTCTCTTCCTTTTCCTCCCTT
CCTTGCCCGGTGCGGACAAGCAATAAATTACCTTGCCCCCGGAGGGACAAGCGGCTTCGCACCTT
GCCCGATGCGGACAAGCAGGTAAACCTCCTTGCCTTCCTATTTCTTCTCTGGCGGCTTCGTTGCC
CGATGCGGACAAGCAGGTAAACCTCCTTGCCTTCCTATTTCTTCTCTGGCGGCTTCGCACCTTGC
TTTCCTAACGTCAAGCAAGCAAGAAATTCCTTGCACTAGGAAGCG
Right flanking sequence: Indices 910875 -- 911374
AGGTAAACCTCCTTGCCTTCCTATTTCTTCTCTGGCGGCTTCGCACCTTGGAATATTTAGAAGAA
GGAGCAGTAGGGAAGTATCTTATTGGATAGCAGCTGGTTTAATAGCTAACAGGTAGATCCCCGTG
GGCAGAACAGAATAACCCTAACTGGTTGATTCGAGAACTTATTGCTATTGGGCACGGATATATCA
CTAGGGATGGTGTAGAATTGTAGGGATGGGATGATGTGAATGGAAGGAGTAGGGATCGTGAGTCA
AGGCTTATCTACTGTGTCCAGGCCTCAAGCGTCAAGGCTTATAGTGAAGGGACTCGGCTTGGCGG
ATCATTTTCATTAATGTCAGTAAATTGTTTGGTGAACCGGATGTCGGAGTTGATCCATCCTAAGG
TGCAAGGTTTTTTGGTGCTAGTTCGATGGGAAGGCAGGCGGAAAGATAGATCGATAAGCAGGTAG
GTGTGATTCGCAGTGTCTGTCGATCATTGCGTAACGTCCCATTCG
Found at i:910387 original size:101 final size:101
Alignment explanation
Indices: 910086--910779 Score: 305
Period size: 101 Copynumber: 7.0 Consensus size: 101
910076 CCGATGCGGA
910086 CAAGCAGGTAAACCTCCTTGCCTTCCTATTTCTTCTCTGGCGGCTTCGCACCTTGCTTTCCTAAC
1 CAAGCAGGTAAACCTCCTTGCCTTCCTATTTCTTCTCTGGCGGCTTCGCACCTTGCTTTCCTAAC
910151 GTCAAGCAAGCAAGAAATTCCTTGCACTAGGAAGCG
66 GTCAAGCAAGCAAGAAATTCCTTGCACTAGGAAGCG
* ** *** ** ** ** **
910187 CAAGC------CCCTCCGGGTCCTCTCC---CGGTGGTC-GAGCAACTAAAGTTCCTTGCTTTCC
1 CAAGCAGGTAAACCTCCTTG-CCT-TCCTATTTCTTCTCTG-GCGGCT-TCGCACCTTGCTTTCC
** ***** * *
910242 TAACGTCAAGCAAGCCCTGCCGGACCTTGC-C--CGATGCGG
62 TAACGTCAAGCAAG-CAAGAAATTCCTTGCACTAGGAAGC-G
910281 ACAAGCAGGTAAACCTCCTTGCCTTCCTATTTCTTCTCTGGCGGCTTCGCACCTTGCTTTCCTAA
1 -CAAGCAGGTAAACCTCCTTGCCTTCCTATTTCTTCTCTGGCGGCTTCGCACCTTGCTTTCCTAA
910346 CGTCAAGCAAGCAAGAAATTCCTTGCACTAGGAAGCG
65 CGTCAAGCAAGCAAGAAATTCCTTGCACTAGGAAGCG
* ** *** ** ** ** **
910383 CAAGC------CCCTCCGGGTCCTCTCC---CGGTGGTC-GAGCAACTAAAGTTCCTTGCTTTCC
1 CAAGCAGGTAAACCTCCTTG-CCT-TCCTATTTCTTCTCTG-GCGGCT-TCGCACCTTGCTTTCC
** ***** * *
910438 TAACGTCAAGCAAGCCCTGCCGGACCTTGC-C--CGATGCGG
62 TAACGTCAAGCAAG-CAAGAAATTCCTTGCACTAGGAAGC-G
910477 ACAAGCAGGTAAACCTCCTTGCCTTCCTATTTCTTCTCTGGCGGCTTCGCACCTTGCTTTCCTAA
1 -CAAGCAGGTAAACCTCCTTGCCTTCCTATTTCTTCTCTGGCGGCTTCGCACCTTGCTTTCCTAA
910542 CGTCAAGCAAGCAAGAAATTCCTTGCACTAGGAAGCG
65 CGTCAAGCAAGCAAGAAATTCCTTGCACTAGGAAGCG
* ** *** ** ** ** **
910579 CAAGC------CCCTCCGGGTCCTCTCC---CGGTGGTC-GAGCAACTAAAGTTCCTTGCTTTCC
1 CAAGCAGGTAAACCTCCTTG-CCT-TCCTATTTCTTCTCTG-GCGGCT-TCGCACCTTGCTTTCC
** ***** * *
910634 TAACGTCAAGCAAGCCCTGCCGGACCTTGC-C--CGATGCGG
62 TAACGTCAAGCAAG-CAAGAAATTCCTTGCACTAGGAAGC-G
910673 ACAAGCAGGTAAACCTCCTTGCCTTCCTATTTCTTCTCTGGCGGCTTCGCACCTTGCTTTCCTAA
1 -CAAGCAGGTAAACCTCCTTGCCTTCCTATTTCTTCTCTGGCGGCTTCGCACCTTGCTTTCCTAA
910738 CGTCAAGCAAGCAAGAAATTCCTTGCACTAGGAAGCG
65 CGTCAAGCAAGCAAGAAATTCCTTGCACTAGGAAGCG
910775 CAAGC
1 CAAGC
910780 CCCTCCGGGT
Statistics
Matches: 395, Mismatches: 138, Indels: 120
0.60 0.21 0.18
Matches are distributed among these distances:
93 15 0.04
94 24 0.06
95 114 0.29
96 33 0.08
97 9 0.02
99 9 0.02
100 33 0.08
101 119 0.30
102 24 0.06
103 15 0.04
ACGTcount: A:0.21, C:0.33, G:0.21, T:0.25
Consensus pattern (101 bp):
CAAGCAGGTAAACCTCCTTGCCTTCCTATTTCTTCTCTGGCGGCTTCGCACCTTGCTTTCCTAAC
GTCAAGCAAGCAAGAAATTCCTTGCACTAGGAAGCG
Left flanking sequence: Indices 909586 -- 910085
ACTACTATATCGGGTGGGAGTGAACAAAGGATGGTAACAGTAAATGAAGGAGCCGGGTAACCGGT
TGAACGAACAACTATAGGAGATGGGGAATTGAATTCCTTCCTATGCTTTTATTAGACTGCAACTA
CCAGCACGCTCAAACCAAAGCCCTATCCTCTATCTCTACTTGAGACCTTTCCGTCTATCTAGCCC
GTCTCTCTCTCTCTTGCTGCCCGGCTTTCTGATCTCTCCCTCCTCAACCTTTGCACCCGTATCAC
AGTTCACCCGTACCAATCGTAGTTTCCAACAGTGCATGGAACCTATTACCTACCTGTATCATCAA
TCTCTCCCTCCCTCCCTCTCTTCCTTTTCCTCCCTTCCTTGCCCGGTGCGGACAAGCAATAAATT
ACCTTGCCCCCGGAGGGACAAGCGGCTTCGCACCTTGCCCGATGCGGACAAGCAGGTAAACCTCC
TTGCCTTCCTATTTCTTCTCTGGCGGCTTCGTTGCCCGATGCGGA
Right flanking sequence: Indices 910780 -- 911279
CCCTCCGGGTCCTCTCCCGGTGGTCGAGCAACTAAAGTTCCTTGCTTTCCTAACGTCAAGCAAGC
CCTGCCGGACCTTGCCCGATGCGGACAAGCAGGTAAACCTCCTTGCCTTCCTATTTCTTCTCTGG
CGGCTTCGCACCTTGGAATATTTAGAAGAAGGAGCAGTAGGGAAGTATCTTATTGGATAGCAGCT
GGTTTAATAGCTAACAGGTAGATCCCCGTGGGCAGAACAGAATAACCCTAACTGGTTGATTCGAG
AACTTATTGCTATTGGGCACGGATATATCACTAGGGATGGTGTAGAATTGTAGGGATGGGATGAT
GTGAATGGAAGGAGTAGGGATCGTGAGTCAAGGCTTATCTACTGTGTCCAGGCCTCAAGCGTCAA
GGCTTATAGTGAAGGGACTCGGCTTGGCGGATCATTTTCATTAATGTCAGTAAATTGTTTGGTGA
ACCGGATGTCGGAGTTGATCCATCCTAAGGTGCAAGGTTTTTTGG
Found at i:910406 original size:196 final size:196
Alignment explanation
Indices: 910072--910924 Score: 1706
Period size: 196 Copynumber: 4.4 Consensus size: 196
910062 GGCGGCTTCG
910072 TTGCCCGATGCGGACAAGCAGGTAAACCTCCTTGCCTTCCTATTTCTTCTCTGGCGGCTTCGCAC
1 TTGCCCGATGCGGACAAGCAGGTAAACCTCCTTGCCTTCCTATTTCTTCTCTGGCGGCTTCGCAC
910137 CTTGCTTTCCTAACGTCAAGCAAGCAAGAAATTCCTTGCACTAGGAAGCGCAAGCCCCTCCGGGT
66 CTTGCTTTCCTAACGTCAAGCAAGCAAGAAATTCCTTGCACTAGGAAGCGCAAGCCCCTCCGGGT
910202 CCTCTCCCGGTGGTCGAGCAACTAAAGTTCCTTGCTTTCCTAACGTCAAGCAAGCCCTGCCGGAC
131 CCTCTCCCGGTGGTCGAGCAACTAAAGTTCCTTGCTTTCCTAACGTCAAGCAAGCCCTGCCGGAC
910267 C
196 C
910268 TTGCCCGATGCGGACAAGCAGGTAAACCTCCTTGCCTTCCTATTTCTTCTCTGGCGGCTTCGCAC
1 TTGCCCGATGCGGACAAGCAGGTAAACCTCCTTGCCTTCCTATTTCTTCTCTGGCGGCTTCGCAC
910333 CTTGCTTTCCTAACGTCAAGCAAGCAAGAAATTCCTTGCACTAGGAAGCGCAAGCCCCTCCGGGT
66 CTTGCTTTCCTAACGTCAAGCAAGCAAGAAATTCCTTGCACTAGGAAGCGCAAGCCCCTCCGGGT
910398 CCTCTCCCGGTGGTCGAGCAACTAAAGTTCCTTGCTTTCCTAACGTCAAGCAAGCCCTGCCGGAC
131 CCTCTCCCGGTGGTCGAGCAACTAAAGTTCCTTGCTTTCCTAACGTCAAGCAAGCCCTGCCGGAC
910463 C
196 C
910464 TTGCCCGATGCGGACAAGCAGGTAAACCTCCTTGCCTTCCTATTTCTTCTCTGGCGGCTTCGCAC
1 TTGCCCGATGCGGACAAGCAGGTAAACCTCCTTGCCTTCCTATTTCTTCTCTGGCGGCTTCGCAC
910529 CTTGCTTTCCTAACGTCAAGCAAGCAAGAAATTCCTTGCACTAGGAAGCGCAAGCCCCTCCGGGT
66 CTTGCTTTCCTAACGTCAAGCAAGCAAGAAATTCCTTGCACTAGGAAGCGCAAGCCCCTCCGGGT
910594 CCTCTCCCGGTGGTCGAGCAACTAAAGTTCCTTGCTTTCCTAACGTCAAGCAAGCCCTGCCGGAC
131 CCTCTCCCGGTGGTCGAGCAACTAAAGTTCCTTGCTTTCCTAACGTCAAGCAAGCCCTGCCGGAC
910659 C
196 C
910660 TTGCCCGATGCGGACAAGCAGGTAAACCTCCTTGCCTTCCTATTTCTTCTCTGGCGGCTTCGCAC
1 TTGCCCGATGCGGACAAGCAGGTAAACCTCCTTGCCTTCCTATTTCTTCTCTGGCGGCTTCGCAC
910725 CTTGCTTTCCTAACGTCAAGCAAGCAAGAAATTCCTTGCACTAGGAAGCGCAAGCCCCTCCGGGT
66 CTTGCTTTCCTAACGTCAAGCAAGCAAGAAATTCCTTGCACTAGGAAGCGCAAGCCCCTCCGGGT
910790 CCTCTCCCGGTGGTCGAGCAACTAAAGTTCCTTGCTTTCCTAACGTCAAGCAAGCCCTGCCGGAC
131 CCTCTCCCGGTGGTCGAGCAACTAAAGTTCCTTGCTTTCCTAACGTCAAGCAAGCCCTGCCGGAC
910855 C
196 C
910856 TTGCCCGATGCGGACAAGCAGGTAAACCTCCTTGCCTTCCTATTTCTTCTCTGGCGGCTTCGCAC
1 TTGCCCGATGCGGACAAGCAGGTAAACCTCCTTGCCTTCCTATTTCTTCTCTGGCGGCTTCGCAC
910921 CTTG
66 CTTG
910925 GAATATTTAG
Statistics
Matches: 657, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
196 657 1.00
ACGTcount: A:0.20, C:0.34, G:0.21, T:0.25
Consensus pattern (196 bp):
TTGCCCGATGCGGACAAGCAGGTAAACCTCCTTGCCTTCCTATTTCTTCTCTGGCGGCTTCGCAC
CTTGCTTTCCTAACGTCAAGCAAGCAAGAAATTCCTTGCACTAGGAAGCGCAAGCCCCTCCGGGT
CCTCTCCCGGTGGTCGAGCAACTAAAGTTCCTTGCTTTCCTAACGTCAAGCAAGCCCTGCCGGAC
C
Left flanking sequence: Indices 909572 -- 910071
CAGTACGTCACATGACTACTATATCGGGTGGGAGTGAACAAAGGATGGTAACAGTAAATGAAGGA
GCCGGGTAACCGGTTGAACGAACAACTATAGGAGATGGGGAATTGAATTCCTTCCTATGCTTTTA
TTAGACTGCAACTACCAGCACGCTCAAACCAAAGCCCTATCCTCTATCTCTACTTGAGACCTTTC
CGTCTATCTAGCCCGTCTCTCTCTCTCTTGCTGCCCGGCTTTCTGATCTCTCCCTCCTCAACCTT
TGCACCCGTATCACAGTTCACCCGTACCAATCGTAGTTTCCAACAGTGCATGGAACCTATTACCT
ACCTGTATCATCAATCTCTCCCTCCCTCCCTCTCTTCCTTTTCCTCCCTTCCTTGCCCGGTGCGG
ACAAGCAATAAATTACCTTGCCCCCGGAGGGACAAGCGGCTTCGCACCTTGCCCGATGCGGACAA
GCAGGTAAACCTCCTTGCCTTCCTATTTCTTCTCTGGCGGCTTCG
Right flanking sequence: Indices 910925 -- 911424
GAATATTTAGAAGAAGGAGCAGTAGGGAAGTATCTTATTGGATAGCAGCTGGTTTAATAGCTAAC
AGGTAGATCCCCGTGGGCAGAACAGAATAACCCTAACTGGTTGATTCGAGAACTTATTGCTATTG
GGCACGGATATATCACTAGGGATGGTGTAGAATTGTAGGGATGGGATGATGTGAATGGAAGGAGT
AGGGATCGTGAGTCAAGGCTTATCTACTGTGTCCAGGCCTCAAGCGTCAAGGCTTATAGTGAAGG
GACTCGGCTTGGCGGATCATTTTCATTAATGTCAGTAAATTGTTTGGTGAACCGGATGTCGGAGT
TGATCCATCCTAAGGTGCAAGGTTTTTTGGTGCTAGTTCGATGGGAAGGCAGGCGGAAAGATAGA
TCGATAAGCAGGTAGGTGTGATTCGCAGTGTCTGTCGATCATTGCGTAACGTCCCATTCGATGAG
AGTAACCCAGCCGAGTAGAGTAGCCCAAGTAGAGAGTATCCGAAT
Found at i:912152 original size:30 final size:30
Alignment explanation
Indices: 912118--912301 Score: 368
Period size: 30 Copynumber: 6.1 Consensus size: 30
912108 GTCAAATGAA
912118 TACGTTAGTGACTCGACTGATAAGGAGAGG
1 TACGTTAGTGACTCGACTGATAAGGAGAGG
912148 TACGTTAGTGACTCGACTGATAAGGAGAGG
1 TACGTTAGTGACTCGACTGATAAGGAGAGG
912178 TACGTTAGTGACTCGACTGATAAGGAGAGG
1 TACGTTAGTGACTCGACTGATAAGGAGAGG
912208 TACGTTAGTGACTCGACTGATAAGGAGAGG
1 TACGTTAGTGACTCGACTGATAAGGAGAGG
912238 TACGTTAGTGACTCGACTGATAAGGAGAGG
1 TACGTTAGTGACTCGACTGATAAGGAGAGG
912268 TACGTTAGTGACTCGACTGATAAGGAGAGG
1 TACGTTAGTGACTCGACTGATAAGGAGAGG
912298 TACG
1 TACG
912302 AACGCTCGAC
Statistics
Matches: 154, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 154 1.00
ACGTcount: A:0.30, C:0.14, G:0.33, T:0.23
Consensus pattern (30 bp):
TACGTTAGTGACTCGACTGATAAGGAGAGG
Left flanking sequence: Indices 911618 -- 912117
GGTATAGAGTTCGAGGGCTATGATTCCGTCGGCACCATGAAAAGTATCATAGCCGGTCAGTGATA
GAACTAGTGGCAGTGAAAGAAGAAAGATGCTCCATGGGAACCTACACTACACGCTATCTCTCTCT
ATAGAAATATATATTTGAAGAATCATAATAATAGGGTAACTCCTCACCATATGAATAGTGAGTCC
CTACCGGGCCTTTTGACCTTTTTACTACTTCAATTTTTCATACACATACATACATTTAGGTAGGC
AGTCATGGAGCTGGCGGTCGATCAGGAAGGATCAAAAGGAAAGATCAGAAGGATATTGCATTGGA
CCAATATGCTTATCCGAAAGCCGCTACTGCCTCCGCTACTGCCTACTCCCTACTCTCCGCTACTA
ACCGCATCACCAGGTCCGTCAGGGGCTCGACTGATAAGGAGAGGTACGTTAAGTGACTCGACCAG
CGCTAGTTACTTATTTGAGAGGGGCCACCCAATAAGTCAAATGAA
Right flanking sequence: Indices 912302 -- 912801
AACGCTCGACTGTTAAGGAGAGGGCTCGACCAGCGGGAGAGGAATTTATTGCTCGACCACCGCCC
CCCACCCAATAAGCAAACCCAAACCGGCAGGGGCTCTCAATCTAAGGAGAGGAATCTATTCCCTT
GAATCAAGTTCTTATTCCTTGGATAGCTATTCGCCTCTCCTTATCTTATTCATTGAGGGGGGGAG
GATATCACCTTGAAGGAATTGATTCTTCTTATTCCTGGAAGGGATATCACCTGGAAGTTCTTATT
CTATGGATGTGGGTAAAAGCCTTTCACCTTGATCTATGTCTTTTCCTTGAGATAGCTACACCTTG
ATCTTGCTCCGCTTGTTCGTGTGCCATAGATCGGGTTAGACCCTGTTGATTGGACACTATTGATC
GGTGGTACGAGACGATAGAAGCAGTCCCGGTTATTCATTCATTCATTCCCAGAGCTATTGATGGT
GGGTTAGACCGCTTCATGGTTCACACAGCTTGGTTCGTTCGATTG
Found at i:919029 original size:13 final size:13
Alignment explanation
Indices: 919011--919036 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
919001 TTTACGAGTC
919011 TCTATCCCTACCT
1 TCTATCCCTACCT
919024 TCTATCCCTACCT
1 TCTATCCCTACCT
919037 CCGGAAGGCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.46, G:0.00, T:0.38
Consensus pattern (13 bp):
TCTATCCCTACCT
Left flanking sequence: Indices 918511 -- 919010
CCACCCTTGGTGTTCCTCTAATAGCATCACGGAAGACTCTGTTAGATTAAGGTTGTTTCAACGCA
CTCTACTTATTGGGTGGGGTGCGGCCGCCAAATGATATATTTCTCAACCATCCCGTTCTCATACA
ACCTTTGAGTCCATAGCTAAGGTTTCCTTAATGCCCTACTATTCTTATTCGCCCCTACTAAAGTA
AGGCAGATTTCATTACGGATCCCGTTACGGCTCAGTATATCCCGTTACGGCATGGCATTACTGAT
CGATCCATCCCGTTACGGCGCCATATATATGTAATTACGCTTTAAAGGAAAGATCTCTCTCTCTC
TTGCCTGTTGTCCGGTTGTTTCGTGATCTCTCTCTCTTGCCTTTGGTGTAAGACTACGATCTATA
CTTAGCAAAAAAAAGCACATCTCCGACCAAGTACTTTCCCTTGGTAGCTCCGATCACTTTGATCA
CTATCTAGAATTCTAGGACAGGGCGCTACACTACCTTTACGAGTC
Right flanking sequence: Indices 919037 -- 919536
CCGGAAGGCAAGCTGGTACCCCCGCTTTCCTCCTAAAGTGGGATTTCACCCTAATAACTGACCCT
TAACGAGGTATCCCGGTTGATTTGCTCTCCCACTCTGCGGGGTAGCCTCCTTCCTTTCCCTCCTA
TATGGAGAATAAGGGTCTGTCACTTTCACCACTGGGTCTACTGCTGCGCCTGGGTCTCGATCTTT
AACGACTAACCTGCTGCTCCTGAGAGTTACCCACCTGAAGAACTAGACCTGTTGGCCCTAGACCA
CTTCATTTATGAATGCTTTTTAGGTACAGCTATAGACCCGGGATCGGATTCAACTACCGAACCTT
CCCTTTACTTCAGTCCACACAACCTACCCACCTGAAGAACTAGACCTGCCTTATACCTATACCAC
TTTCATGAATCGCTTAGGAGCCACTGCACTATTGCTCTCTTACTTAGCCTATTTACCTTTACTTA
AGTGTTCTCTACTCAAAACCCCCCCACCTGTTCTCTTTACCCACC
Found at i:922247 original size:32 final size:32
Alignment explanation
Indices: 922206--922374 Score: 295
Period size: 32 Copynumber: 5.3 Consensus size: 32
922196 AACCTCCGCC
922206 TCCTCTCCTTATCAGTCGAGCCTGCTTGTGCA
1 TCCTCTCCTTATCAGTCGAGCCTGCTTGTGCA
* * *
922238 TCCTCTCCTTA-GATTGAGAGCCTGCTTGTGCA
1 TCCTCTCCTTATCAGT-CGAGCCTGCTTGTGCA
922270 TCCTCTCCTTATCAGTCGAGCCTGCTTGTGCA
1 TCCTCTCCTTATCAGTCGAGCCTGCTTGTGCA
922302 TCCTCTCCTTATCAGTCGAGCCTGCTTGTGCA
1 TCCTCTCCTTATCAGTCGAGCCTGCTTGTGCA
922334 TCCTCTCCTTATCAGTCGAGCCTGCTTGTGCA
1 TCCTCTCCTTATCAGTCGAGCCTGCTTGTGCA
922366 TCCTCTCCT
1 TCCTCTCCT
922375 CTCCCTCTCC
Statistics
Matches: 129, Mismatches: 6, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
31 2 0.02
32 125 0.97
33 2 0.02
ACGTcount: A:0.12, C:0.34, G:0.18, T:0.35
Consensus pattern (32 bp):
TCCTCTCCTTATCAGTCGAGCCTGCTTGTGCA
Left flanking sequence: Indices 921706 -- 922205
TGGGACCATATCGAAGCAAAGTGAAGTAGAGAAGGCTGGAGTGGAGTGGGTCGAATGAGTAGAGT
GAAATAAAAGGATTGAATGGTTCAAAGAGTGGATGGGTTGGAGGTACAAAGTTGAAAAAAGAAGT
GAAGGCGGCTCAATACTTAAGAGTGCGAGCTGTTGGTACACAGAGTAAAGAGCGCGAGGGATGGG
AAACATAGATGGAATTTTGGTCATTTTGTTACTACCATGGGTCACCATACAGAGAAGGAAAGATC
CGTGTAGAATGGATAGGAAAGGTTGACCTTCGGCACATGCATGATAGATGGAGCGGCACGAGTCA
ATGGCGTGATGAGAATGAATGACGAATTGGAAAGATCCCAACGGCCGCTATCAGCCTATCGAGAG
AGTGCAGAGGCCAATAGAGTGGGAGGGTTGGTATGTGCTTCAGTTATCAGCCTATCGAGAGAGTG
CAGAGGCCAATCATATATTATATATGTCATTACAAAACCTCCGCC
Right flanking sequence: Indices 922375 -- 922874
CTCCCTCTCCTTAACAGTCGAGCACCTAAAGGTCCTTATGGTCGAGCACCTAAAGGTCCTTAACA
GTCGAGCCCCTCCGGTCCTCTCCTTATCAGTCGAGCCTGCTTAAGCATCCTGAAAATGCTATAAT
AGGAGGGAAAGATGTGAAAACCTCCGCCAAGCTAAAATGGCCAAATTAGTAGGATGCGTAAGCAT
GCTCGACTGTTAAGGCCGCCATCATGCCCCCCGGCAGGGTGAGGGTGAGCCTGTCGAACTCTCGA
CCTATGCTAGTTACTTATTTGAGAGGGGCACCCAATAAGTCAAATTGAAACGTTCCATTGTTCCG
TAGCGGTAAGTTTGAGGGTAACATTCTCTTTCGGTTTATGAATTGAATTGAACGGGTTACTTCCT
TCTCTGTCGGGTATGGCTTTAATGATAGGGTACATTTCCTTGCACTAGGAAGCGCAAGACCCTCC
GGACCTTCCTTTCTCGTGTATGAATTGAATGGTATCCTGTGATGG
Found at i:922420 original size:24 final size:24
Alignment explanation
Indices: 922391--922436 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
922381 CTCCTTAACA
922391 GTCGAGCACCTAAAGGTCCTTATG
1 GTCGAGCACCTAAAGGTCCTTATG
922415 GTCGAGCACCTAAAGGTCCTTA
1 GTCGAGCACCTAAAGGTCCTTA
922437 ACAGTCGAGC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.26, C:0.26, G:0.24, T:0.24
Consensus pattern (24 bp):
GTCGAGCACCTAAAGGTCCTTATG
Left flanking sequence: Indices 921891 -- 922390
GAGGGATGGGAAACATAGATGGAATTTTGGTCATTTTGTTACTACCATGGGTCACCATACAGAGA
AGGAAAGATCCGTGTAGAATGGATAGGAAAGGTTGACCTTCGGCACATGCATGATAGATGGAGCG
GCACGAGTCAATGGCGTGATGAGAATGAATGACGAATTGGAAAGATCCCAACGGCCGCTATCAGC
CTATCGAGAGAGTGCAGAGGCCAATAGAGTGGGAGGGTTGGTATGTGCTTCAGTTATCAGCCTAT
CGAGAGAGTGCAGAGGCCAATCATATATTATATATGTCATTACAAAACCTCCGCCTCCTCTCCTT
ATCAGTCGAGCCTGCTTGTGCATCCTCTCCTTAGATTGAGAGCCTGCTTGTGCATCCTCTCCTTA
TCAGTCGAGCCTGCTTGTGCATCCTCTCCTTATCAGTCGAGCCTGCTTGTGCATCCTCTCCTTAT
CAGTCGAGCCTGCTTGTGCATCCTCTCCTCTCCCTCTCCTTAACA
Right flanking sequence: Indices 922437 -- 922936
ACAGTCGAGCCCCTCCGGTCCTCTCCTTATCAGTCGAGCCTGCTTAAGCATCCTGAAAATGCTAT
AATAGGAGGGAAAGATGTGAAAACCTCCGCCAAGCTAAAATGGCCAAATTAGTAGGATGCGTAAG
CATGCTCGACTGTTAAGGCCGCCATCATGCCCCCCGGCAGGGTGAGGGTGAGCCTGTCGAACTCT
CGACCTATGCTAGTTACTTATTTGAGAGGGGCACCCAATAAGTCAAATTGAAACGTTCCATTGTT
CCGTAGCGGTAAGTTTGAGGGTAACATTCTCTTTCGGTTTATGAATTGAATTGAACGGGTTACTT
CCTTCTCTGTCGGGTATGGCTTTAATGATAGGGTACATTTCCTTGCACTAGGAAGCGCAAGACCC
TCCGGACCTTCCTTTCTCGTGTATGAATTGAATGGTATCCTGTGATGGTTTCCTTCTCTTTCGGG
TATTATGTTGTGATGGTCTCGCTCACAGCAGGTGTGACTCACTCG
Found at i:923043 original size:19 final size:19
Alignment explanation
Indices: 923019--923056 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
923009 ATGCGGGAAC
923019 GTGGGAGACATAAAATCAA
1 GTGGGAGACATAAAATCAA
923038 GTGGGAGACATAAAATCAA
1 GTGGGAGACATAAAATCAA
923057 ATTGCATCAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.47, C:0.11, G:0.26, T:0.16
Consensus pattern (19 bp):
GTGGGAGACATAAAATCAA
Left flanking sequence: Indices 922519 -- 923018
TGAAAACCTCCGCCAAGCTAAAATGGCCAAATTAGTAGGATGCGTAAGCATGCTCGACTGTTAAG
GCCGCCATCATGCCCCCCGGCAGGGTGAGGGTGAGCCTGTCGAACTCTCGACCTATGCTAGTTAC
TTATTTGAGAGGGGCACCCAATAAGTCAAATTGAAACGTTCCATTGTTCCGTAGCGGTAAGTTTG
AGGGTAACATTCTCTTTCGGTTTATGAATTGAATTGAACGGGTTACTTCCTTCTCTGTCGGGTAT
GGCTTTAATGATAGGGTACATTTCCTTGCACTAGGAAGCGCAAGACCCTCCGGACCTTCCTTTCT
CGTGTATGAATTGAATGGTATCCTGTGATGGTTTCCTTCTCTTTCGGGTATTATGTTGTGATGGT
CTCGCTCACAGCAGGTGTGACTCACTCGGCCCCGTACCGTGTTGAGTGGATGTGTCATGTTGTGA
AGGTGACTCGGGTATGCGTTGAGGGTGACTCCGGTATGCGGGAAC
Right flanking sequence: Indices 923057 -- 923556
ATTGCATCACCTAACCTAACCTAACCTAACCTAACCTAACCTAACTCTCTCTCTCGTTCGGTGAC
AACTTAACCTCAATAAATCACTATCTCTTCTGGTGTTACCTTGGCTATTCTCTGTTCTGGTAGGA
TAGCAAAAGCGAACAAATAGGGGGACATCGGGTCCCCTTGCCTCAAACCTCTACTGTTACTGAAG
AAACCGCATAGTTCTCCATTGATGTTAACAGAGAATCTAGCTGTTGTGATACACTCCTTAATCCA
GTGGATAACCCTCTGTGGGAAGCCGGTGGCTTGGAGAGTAGCCACTAGAAACTCCCAATTAATAG
TGTCATAGGCTTTCAATAAGTAAACCTTGAGAGCACACCTAGGGGAGCCCTTATCCCTGTGATAG
TTCCTCATTAATTCCTGAGCAAGGAGGACCGGTAGGGGCTCACCATTCCGATGGTGAGGATATTG
TCGCCAATTCTTCTACCTTCCACAAAAGCCGACTGTTGAATGCCC
Found at i:923073 original size:5 final size:5
Alignment explanation
Indices: 923065--923101 Score: 74
Period size: 5 Copynumber: 7.4 Consensus size: 5
923055 AAATTGCATC
923065 ACCTA ACCTA ACCTA ACCTA ACCTA ACCTA ACCTA AC
1 ACCTA ACCTA ACCTA ACCTA ACCTA ACCTA ACCTA AC
923102 TCTCTCTCTC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 32 1.00
ACGTcount: A:0.41, C:0.41, G:0.00, T:0.19
Consensus pattern (5 bp):
ACCTA
Left flanking sequence: Indices 922565 -- 923064
AGCATGCTCGACTGTTAAGGCCGCCATCATGCCCCCCGGCAGGGTGAGGGTGAGCCTGTCGAACT
CTCGACCTATGCTAGTTACTTATTTGAGAGGGGCACCCAATAAGTCAAATTGAAACGTTCCATTG
TTCCGTAGCGGTAAGTTTGAGGGTAACATTCTCTTTCGGTTTATGAATTGAATTGAACGGGTTAC
TTCCTTCTCTGTCGGGTATGGCTTTAATGATAGGGTACATTTCCTTGCACTAGGAAGCGCAAGAC
CCTCCGGACCTTCCTTTCTCGTGTATGAATTGAATGGTATCCTGTGATGGTTTCCTTCTCTTTCG
GGTATTATGTTGTGATGGTCTCGCTCACAGCAGGTGTGACTCACTCGGCCCCGTACCGTGTTGAG
TGGATGTGTCATGTTGTGAAGGTGACTCGGGTATGCGTTGAGGGTGACTCCGGTATGCGGGAACG
TGGGAGACATAAAATCAAGTGGGAGACATAAAATCAAATTGCATC
Right flanking sequence: Indices 923102 -- 923601
TCTCTCTCTCGTTCGGTGACAACTTAACCTCAATAAATCACTATCTCTTCTGGTGTTACCTTGGC
TATTCTCTGTTCTGGTAGGATAGCAAAAGCGAACAAATAGGGGGACATCGGGTCCCCTTGCCTCA
AACCTCTACTGTTACTGAAGAAACCGCATAGTTCTCCATTGATGTTAACAGAGAATCTAGCTGTT
GTGATACACTCCTTAATCCAGTGGATAACCCTCTGTGGGAAGCCGGTGGCTTGGAGAGTAGCCAC
TAGAAACTCCCAATTAATAGTGTCATAGGCTTTCAATAAGTAAACCTTGAGAGCACACCTAGGGG
AGCCCTTATCCCTGTGATAGTTCCTCATTAATTCCTGAGCAAGGAGGACCGGTAGGGGCTCACCA
TTCCGATGGTGAGGATATTGTCGCCAATTCTTCTACCTTCCACAAAAGCCGACTGTTGAATGCCC
ACTAAGGATGGAATCACTTTCCTCAACCTGTTGGCAACGATCTTG
Done.