123.fas.2.7.7.80.10.50.500.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NC_039746
Parameters: 2 7 7 80 10 50 500
Length:  1191054

Tables:   1   2   3   4   5   6   7   8   

This is table  8  of  8  ( 912 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1108684--1108760	35	2.1	38	88	7	115	27	14	40	18	1.89
1108746--1108771	11	2.4	11	100	0	52	38	0	61	0	0.96
1108711--1108807	49	2.1	45	86	7	131	26	12	46	14	1.80
1108889--1108945	9	6.3	9	100	0	114	10	56	22	10	1.64
1113198--1113347	29	5.2	29	99	0	291	20	34	17	28	1.95
1113484--1113542	27	2.2	27	100	0	118	10	50	10	28	1.68
1113494--1113564	27	2.6	27	84	0	79	16	38	16	28	1.91
1115526--1115566	21	2.0	21	95	0	73	0	31	21	46	1.52
1118980--1119044	24	2.7	24	85	0	76	10	13	46	29	1.77
1119531--1119569	20	2.0	20	90	5	62	33	17	35	12	1.88
1121059--1121197	1	139.0	1	100	0	278	0	100	0	0	0.00
1121263--1121385	51	2.4	52	82	4	135	24	28	22	24	2.00
1121295--1121387	24	3.7	25	88	7	143	25	27	23	22	2.00
1121777--1121813	1	37.0	1	100	0	74	0	0	100	0	0.00
1121632--1121957	180	1.8	180	100	0	652	14	33	30	22	1.93
1122342--1122452	56	2.0	56	100	0	222	37	7	15	39	1.75
1122684--1122787	46	2.3	46	100	0	208	24	18	25	32	1.97
1125140--1125209	24	2.8	25	84	4	106	27	30	21	21	1.98
1125390--1125460	24	3.0	24	93	4	126	26	25	25	22	2.00
1126102--1126177	35	2.1	36	97	2	145	6	38	15	39	1.74
1126828--1126865	13	2.9	13	100	0	76	23	31	23	21	1.98
1129072--1129271	103	1.9	103	97	0	382	26	30	21	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1129783--1129851	33	2.1	33	89	5	104	34	10	34	20	1.86
1131459--1131496	18	2.1	18	85	9	51	15	44	15	23	1.85
1131461--1131489	14	2.1	14	93	6	51	13	44	17	24	1.85
1132792--1132826	17	2.1	17	100	0	70	25	5	45	22	1.74
1133277--1133305	11	2.6	11	100	0	58	37	0	62	0	0.96
1136812--1136852	21	2.0	21	85	4	57	36	12	34	17	1.87
1136949--1136990	17	2.5	17	100	0	84	38	16	23	21	1.93
1141537--1141585	25	2.0	25	100	0	98	36	4	34	24	1.75
1142792--1142832	21	2.0	21	100	0	82	14	34	21	29	1.93
1143713--1143742	16	1.9	15	93	6	51	20	36	0	43	1.52
1144132--1144163	16	2.0	16	100	0	64	18	31	6	43	1.75
1149162--1149234	9	8.1	9	100	0	146	10	23	54	10	1.66
1149311--1149396	43	2.0	43	100	0	172	20	34	9	34	1.85
1149569--1149619	20	2.5	20	100	0	102	3	49	19	27	1.66
1149564--1149621	20	2.5	24	76	23	79	3	50	17	29	1.62
1149608--1149665	27	2.1	27	100	0	116	10	50	10	29	1.70
1149617--1149687	27	2.6	27	84	0	79	16	38	16	28	1.91
1149983--1150033	25	2.0	25	96	0	93	29	27	19	23	1.98
1150060--1150114	27	2.0	27	100	0	110	21	29	21	27	1.99
1150064--1150163	32	3.3	32	83	8	113	18	34	21	27	1.96
1152157--1152396	120	2.0	120	100	0	480	20	23	19	36	1.95
1152454--1152499	23	2.0	23	91	0	74	45	21	21	10	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1153316--1153341	5	5.2	5	100	0	52	0	57	0	42	0.98
1153612--1153662	25	2.0	25	96	0	93	29	27	19	23	1.98
1153693--1153744	27	1.9	27	88	0	77	19	30	21	28	1.97
1156073--1156185	50	2.1	52	84	9	140	21	22	23	33	1.97
1156105--1156212	56	1.9	54	80	10	119	24	20	22	33	1.97
1157945--1157982	13	2.9	13	100	0	76	23	39	0	36	1.55
1158028--1158057	15	2.0	15	100	0	60	33	6	40	20	1.78
1158511--1158559	18	2.7	18	87	0	71	24	28	8	38	1.84
1162337--1162427	46	2.0	46	100	0	182	19	34	17	28	1.95
1162556--1162606	24	2.1	24	96	0	93	23	23	27	25	2.00
1164628--1164678	25	2.0	25	88	7	77	15	23	21	39	1.92
1165127--1165153	10	2.7	10	100	0	54	51	11	18	18	1.74
1170287--1170311	13	1.9	13	100	0	50	24	24	32	20	1.98
1170484--1170542	30	2.0	30	90	6	93	11	25	27	35	1.91
1170852--1170901	20	2.5	20	93	0	82	30	28	2	40	1.68
1171127--1171153	13	2.1	13	100	0	54	48	14	14	22	1.81
1171191--1171229	13	2.9	14	88	7	55	30	28	15	25	1.96
1172458--1172588	69	1.9	66	90	4	208	16	33	21	28	1.95
1174343--1174405	24	2.6	24	89	2	99	26	26	23	22	2.00
1178099--1178130	15	2.1	15	94	0	55	21	21	18	37	1.94
1178126--1178150	12	2.1	12	100	0	50	32	20	0	48	1.50
1179997--1180022	5	5.2	5	100	0	52	0	57	0	42	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1180180--1180275	27	3.6	27	76	10	117	20	32	19	27	1.97
1181316--1181428	35	3.5	35	67	18	116	29	15	35	20	1.93
1181289--1181453	62	2.7	62	96	1	298	26	16	33	22	1.96
1181412--1181465	25	2.2	25	96	0	99	20	20	27	31	1.97
1182436--1182547	32	3.5	32	100	0	224	34	8	34	21	1.85
1184140--1184176	12	3.1	12	96	0	65	8	40	16	35	1.78

Tables:   1   2   3   4   5   6   7   8

The End!