Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_039746
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 1191054
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 2 characters in sequence are not A, C, G, or T
File 3 of 8
Found at i:294168 original size:23 final size:23
Alignment explanation
Indices: 294077--294160 Score: 114
Period size: 23 Copynumber: 3.4 Consensus size: 23
294067 AGAAAATGGA
294077 ATAGATAGGACATATGTAAATAG
1 ATAGATAGGACATATGTAAATAG
*
294100 ATAGATAGGAAATATGTAAATGGAATAG
1 ATAGATAGGACATATGT--A---AATAG
294128 ATAGATAGGACATATGTAAATAG
1 ATAGATAGGACATATGTAAATAG
294151 ATAGATAGGA
1 ATAGATAGGA
294161 GATCTGTATC
Statistics
Matches: 54, Mismatches: 2, Indels: 10
0.82 0.03 0.15
Matches are distributed among these distances:
23 31 0.57
25 1 0.02
26 1 0.02
28 21 0.39
ACGTcount: A:0.49, C:0.02, G:0.24, T:0.25
Consensus pattern (23 bp):
ATAGATAGGACATATGTAAATAG
Left flanking sequence: Indices 293577 -- 294076
GAGTCTGAATATAACTCTTACTTTGTACTTATCGAGGTTCTGCCCCCATATATAAGTAAGTAAGG
AAAGAGGTTCTCAATACTTTCTTACTTATGTATGTAATTACGCTCCGATCTTGAAAGAGATTGAT
TCTGACCGGAGTACCCTCCCAAGGCCAAGGGGATAAGTAGATCAACCGCCCTGCCTACCCACCCA
CTAAGTCTCGTCCTGCCTACCTACCTATCCTATATCGAACTGCCTATCCGTAGCGATCTGCCTAC
CTATCAGTATCGATCCGCCTACCTAAGGAAGGAAGGGGATAGTAGCGACCTGCCTACCTATCAGT
ATCGATCTGCCTACCTGCCTGTCAGATTCGAGGACCCTAAAGCGGGTATTGACTATTCCATACAA
ATCCCAAAAGAAAAAGACACTCCAACAGCAACTCTCAGAAGAAAACGATTCAAATTAGTGAATGA
ATTCCGATTACCAAGGTATTGGGTCGAGTCAATTCAGAAAATGGA
Right flanking sequence: Indices 294161 -- 294660
GATCTGTATCCCAATCAATTCTGACATCTGGATAACTCTATTTTCTTTTTATTCGTCTTTCCTTG
ACTGTTACCCTTCATTCCTTCGATCATACCCGATAAGGTTATAAGTGCCTAGCAACAAAGGGTAA
TGAAAGGCAAGTGTTATCGAGGTGAATGCTGTCTCTCTCGAACGCCCATACAAGATGCTCTATGT
GAACTGCCCGTACAATGTGCGTTTGGGGTATGGGTTGGGTAAGTGAGTAAGTGAAGGGTTCATAG
ATGCCGTACCCTCCTATTCCTGGCCTGGCTGAAGCAAGTGTTGTTGAGTTGGGCAGCACTCCACC
ATCTCCTAGAGTGGAAGGCAGTAAGGTCTGGTATAACAGGTGGTGGGACTAAAATGAAAGAGAAA
TAGGGCTCTTCCTTTCCTAGCCAGTGGGTTCAAATTCCTAAATAGTATTTGGCTGACCTAACCGG
GTGAAGCTAGTTCGTCCCCCCAGCTCAATAGTGTTGCTACAACAA
Found at i:297364 original size:9 final size:9
Alignment explanation
Indices: 297350--297384 Score: 52
Period size: 9 Copynumber: 3.9 Consensus size: 9
297340 GCTGGAGCTT
297350 AAGCTGGAG
1 AAGCTGGAG
297359 AAGCTGGAG
1 AAGCTGGAG
*
297368 GAGCTGGAG
1 AAGCTGGAG
*
297377 GAGCTGGA
1 AAGCTGGA
297385 TGGATCGAGA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.29, C:0.11, G:0.49, T:0.11
Consensus pattern (9 bp):
AAGCTGGAG
Left flanking sequence: Indices 296850 -- 297349
AACTTCCTCGCTCTTATGCCTCTCCCTCGTCCTAAGGTTGGTTAGGCAATCTAAGGGAAAAGTCA
GCTTGATCGAGCAAGCCTAACGGAATATGGTCGAGAGGGGAACGATTGGTACCCAACCCTTCCTT
CTAGCTTTCCTAGTTGGTGTGGGCTACATTATATGCGGGGTCCGGCCCAGTAGCGGCTTCACTAC
CACCTCGATCAGCGCTAGTAGTGCTTTTGCACCTCTTCCCTTTCGAGAGCTAGTTGGATTACCCT
AAAGTATAGGCAGTTGATTCATAGGTCAATGGTAGCAGCTGTTTCAGTCGATCCAGAAACAAACA
TAGACCAGGGAAGCAAGAAGGGAGCTCTTCACTACCTCGACAGCCTAAATGTGATCGGAGAATCG
TAACCCCTTGCAAGACCTCCGGACCTTCCTTAGCCAAGTATTTGAATGGCTGGCTGGATGGCTGG
ATGGATGGGGAGCTTTATTGCTGGATGGATCGGAAGCTGGAGCTT
Right flanking sequence: Indices 297385 -- 297884
TGGATCGAGATATAAATCTTATATATGTTACACCCAGAGCTTGAGTGATAGATGGATGCTTACTT
GCTAGAATCTCTAGTTGCTCTTGTGCATTTATTGATATGCAACAAACCTGCCCACCAACGACCTT
AGCCCTTGGGAACAGGCGCACCTACCTGCTGATCTATTGCTGCTTGCCCATTTAGATATAGATAT
ATCTTGCTTATACTTACGCTAATCATAAGACCTAGGGACCTTAGAACCGATAGGACACAGTCCCC
GCTTACCCGCCACTTACAGGGACCCCCGTAACCCCCCCCGCCAACCTTAGCTGGGGACAAGGACC
ACCAATAACAACTGGAAAAAAACCAACAGGACAGGCCAATCAGTTCAGGACCACCAGGGCAGGAT
CACCACACTCCCACCAGGCCAAGAAACATGGGCCTACACACTAAACAGTACACCTCCTGGGCTCC
CACCTGTACACCTCTCATGGGACTACGGATGTTACCTGGGACTAG
Found at i:298245 original size:13 final size:14
Alignment explanation
Indices: 298219--298257 Score: 55
Period size: 13 Copynumber: 2.9 Consensus size: 14
298209 GAAGGAGAGA
298219 TAGATTGAGATTGAT
1 TAGATTG-GATTGAT
298234 T-GATTGGATTGAT
1 TAGATTGGATTGAT
298247 TAGATT-GATTG
1 TAGATTGGATTG
298258 CCAACAGATA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
13 13 0.57
14 9 0.39
15 1 0.04
ACGTcount: A:0.28, C:0.00, G:0.28, T:0.44
Consensus pattern (14 bp):
TAGATTGGATTGAT
Left flanking sequence: Indices 297719 -- 298218
AACTGGAAAAAAACCAACAGGACAGGCCAATCAGTTCAGGACCACCAGGGCAGGATCACCACACT
CCCACCAGGCCAAGAAACATGGGCCTACACACTAAACAGTACACCTCCTGGGCTCCCACCTGTAC
ACCTCTCATGGGACTACGGATGTTACCTGGGACTAGCTCACCCACTTGGCTTGGATCCTTTAAAC
CACTTGGCTGGGACTACTACTTTCACACACTTAGCCATTGACTCTGCTCACCCACTTGGATGGGC
TACTTGGCTTGGCCTTGGATACCGGGATGCTTGCTGGCTGGAATAATGAAGAGGTAGGTTTTTAT
CCAATATGGAAAAAAGGAGGGGGAGGGAGGGACAAGCATGAGAGAAGGAAGGTGGTGCTTATTGT
TGGATAATAACGTCTATAATGCAATCATTGCTTGTGTGATGTTCAGTGTGAAGGATATTGAAAGA
AGTGACGTTCAGTGAAGTCTACGTGATGGATATAGGAAGGAGAGA
Right flanking sequence: Indices 298258 -- 298757
CCAACAGATATATATATACCGGTACCTATAACGATACCCGATACTCTCTACGATACCGATCTCGA
TACCAATCTATATACCAATCTATATAGCTTATAAATCCATCATTTGTCAATCTGAACAGCAAGGC
TATATGAACAACCAGTCATCTCTATGAAGCAAGGGCCCTATAACAACCGAGGCTAGATGGAACAC
CCCTTCATCTAAAACAACCAGGCTCCTTCCTCTTGAAACTCTTTCACACGGAAGTGAACTAGTGT
GAGGTGGTGCATCACCTGAAAACCCATGCATGAAGTGTTCCCACTGACCGGAACTGGACGGATAC
ACAGACAGCCCGAGATACCTACATCCTCAGACTTCACCTTTAGCCCTCTGCCCTAGGCCCTAGAC
CCGAGATCCTCTCCCTATGGTCGAGCCTGCTTAGGCATCCTCTTCCATCCATCCTTCAACTCCAT
CCTTCAACTCCATCCTCTGCCAGCCATACCCCATCCAGCCTCTTC
Found at i:298344 original size:12 final size:12
Alignment explanation
Indices: 298322--298348 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
298312 ACCGATCTCG
298322 ATACCAATCTAT
1 ATACCAATCTAT
298334 ATACCAATCTAT
1 ATACCAATCTAT
298346 ATA
1 ATA
298349 GCTTATAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.44, C:0.22, G:0.00, T:0.33
Consensus pattern (12 bp):
ATACCAATCTAT
Left flanking sequence: Indices 297822 -- 298321
GTACACCTCCTGGGCTCCCACCTGTACACCTCTCATGGGACTACGGATGTTACCTGGGACTAGCT
CACCCACTTGGCTTGGATCCTTTAAACCACTTGGCTGGGACTACTACTTTCACACACTTAGCCAT
TGACTCTGCTCACCCACTTGGATGGGCTACTTGGCTTGGCCTTGGATACCGGGATGCTTGCTGGC
TGGAATAATGAAGAGGTAGGTTTTTATCCAATATGGAAAAAAGGAGGGGGAGGGAGGGACAAGCA
TGAGAGAAGGAAGGTGGTGCTTATTGTTGGATAATAACGTCTATAATGCAATCATTGCTTGTGTG
ATGTTCAGTGTGAAGGATATTGAAAGAAGTGACGTTCAGTGAAGTCTACGTGATGGATATAGGAA
GGAGAGATAGATTGAGATTGATTGATTGGATTGATTAGATTGATTGCCAACAGATATATATATAC
CGGTACCTATAACGATACCCGATACTCTCTACGATACCGATCTCG
Right flanking sequence: Indices 298349 -- 298848
GCTTATAAATCCATCATTTGTCAATCTGAACAGCAAGGCTATATGAACAACCAGTCATCTCTATG
AAGCAAGGGCCCTATAACAACCGAGGCTAGATGGAACACCCCTTCATCTAAAACAACCAGGCTCC
TTCCTCTTGAAACTCTTTCACACGGAAGTGAACTAGTGTGAGGTGGTGCATCACCTGAAAACCCA
TGCATGAAGTGTTCCCACTGACCGGAACTGGACGGATACACAGACAGCCCGAGATACCTACATCC
TCAGACTTCACCTTTAGCCCTCTGCCCTAGGCCCTAGACCCGAGATCCTCTCCCTATGGTCGAGC
CTGCTTAGGCATCCTCTTCCATCCATCCTTCAACTCCATCCTTCAACTCCATCCTCTGCCAGCCA
TACCCCATCCAGCCTCTTCCTTCACCTCCAGCCATCCTCTGCCAGCCATCCTCCATCCAGCTTAG
GATTGATGTAATGAAATAGAGAATATATGCATTGAAGAAGGGTTG
Found at i:298713 original size:13 final size:13
Alignment explanation
Indices: 298695--298728 Score: 68
Period size: 13 Copynumber: 2.6 Consensus size: 13
298685 TCCTCTTCCA
298695 TCCATCCTTCAAC
1 TCCATCCTTCAAC
298708 TCCATCCTTCAAC
1 TCCATCCTTCAAC
298721 TCCATCCT
1 TCCATCCT
298729 CTGCCAGCCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.21, C:0.47, G:0.00, T:0.32
Consensus pattern (13 bp):
TCCATCCTTCAAC
Left flanking sequence: Indices 298195 -- 298694
CGTGATGGATATAGGAAGGAGAGATAGATTGAGATTGATTGATTGGATTGATTAGATTGATTGCC
AACAGATATATATATACCGGTACCTATAACGATACCCGATACTCTCTACGATACCGATCTCGATA
CCAATCTATATACCAATCTATATAGCTTATAAATCCATCATTTGTCAATCTGAACAGCAAGGCTA
TATGAACAACCAGTCATCTCTATGAAGCAAGGGCCCTATAACAACCGAGGCTAGATGGAACACCC
CTTCATCTAAAACAACCAGGCTCCTTCCTCTTGAAACTCTTTCACACGGAAGTGAACTAGTGTGA
GGTGGTGCATCACCTGAAAACCCATGCATGAAGTGTTCCCACTGACCGGAACTGGACGGATACAC
AGACAGCCCGAGATACCTACATCCTCAGACTTCACCTTTAGCCCTCTGCCCTAGGCCCTAGACCC
GAGATCCTCTCCCTATGGTCGAGCCTGCTTAGGCATCCTCTTCCA
Right flanking sequence: Indices 298729 -- 299228
CTGCCAGCCATACCCCATCCAGCCTCTTCCTTCACCTCCAGCCATCCTCTGCCAGCCATCCTCCA
TCCAGCTTAGGATTGATGTAATGAAATAGAGAATATATGCATTGAAGAAGGGTTGGGTACCAACG
TGTGGCTAAAGTAGCGATAAAACGCACGCAAATGTTCAATTGACTTATTGGGTGCCCCTCTCAAA
TAAGTAACTAGCGTTGGTCGAGCGATGGCGGCCTTATTAGTCGAGCGTTCGTACCTCACCCTGCC
GGGGGCACCCTACTAATTTGGCCATTTTCTCTTGGCGGAGGTTTTTCAAGATTCCCCTACTATTA
TAGCATTTTCAGGAGGCGGAGGTTTTGGAATATTGAGCAACGAATGAATGCATAATGACATATAT
AATGAGATATTGTTCGTACAAGCATTCAACCTTCCGCCTTCATCACCAGCCAAGTCCAACAGAAG
CCTTCACCCAGCCTTAAGCAGACCCGAACCATATGAAATGCATAA
Found at i:298768 original size:44 final size:45
Alignment explanation
Indices: 298712--298799 Score: 117
Period size: 48 Copynumber: 1.9 Consensus size: 45
298702 TTCAACTCCA
298712 TCCTTCAACT-CCATCCTCTGCCAGCCATACC-CCATCCAGCCTCT
1 TCCTTCAACTCCCATCCTCTGCCAGCCAT-CCTCCATCCAGCCTCT
*
298756 TCCTTCACCTCCAGCCATCCTCTGCCAGCCATCCTCCATCCAGC
1 TCCTTCAACT-C--CCATCCTCTGCCAGCCATCCTCCATCCAGC
298800 TTAGGATTGA
Statistics
Matches: 38, Mismatches: 1, Indels: 6
0.84 0.02 0.13
Matches are distributed among these distances:
44 9 0.24
47 2 0.05
48 27 0.71
ACGTcount: A:0.17, C:0.51, G:0.08, T:0.24
Consensus pattern (45 bp):
TCCTTCAACTCCCATCCTCTGCCAGCCATCCTCCATCCAGCCTCT
Left flanking sequence: Indices 298212 -- 298711
GGAGAGATAGATTGAGATTGATTGATTGGATTGATTAGATTGATTGCCAACAGATATATATATAC
CGGTACCTATAACGATACCCGATACTCTCTACGATACCGATCTCGATACCAATCTATATACCAAT
CTATATAGCTTATAAATCCATCATTTGTCAATCTGAACAGCAAGGCTATATGAACAACCAGTCAT
CTCTATGAAGCAAGGGCCCTATAACAACCGAGGCTAGATGGAACACCCCTTCATCTAAAACAACC
AGGCTCCTTCCTCTTGAAACTCTTTCACACGGAAGTGAACTAGTGTGAGGTGGTGCATCACCTGA
AAACCCATGCATGAAGTGTTCCCACTGACCGGAACTGGACGGATACACAGACAGCCCGAGATACC
TACATCCTCAGACTTCACCTTTAGCCCTCTGCCCTAGGCCCTAGACCCGAGATCCTCTCCCTATG
GTCGAGCCTGCTTAGGCATCCTCTTCCATCCATCCTTCAACTCCA
Right flanking sequence: Indices 298800 -- 299299
TTAGGATTGATGTAATGAAATAGAGAATATATGCATTGAAGAAGGGTTGGGTACCAACGTGTGGC
TAAAGTAGCGATAAAACGCACGCAAATGTTCAATTGACTTATTGGGTGCCCCTCTCAAATAAGTA
ACTAGCGTTGGTCGAGCGATGGCGGCCTTATTAGTCGAGCGTTCGTACCTCACCCTGCCGGGGGC
ACCCTACTAATTTGGCCATTTTCTCTTGGCGGAGGTTTTTCAAGATTCCCCTACTATTATAGCAT
TTTCAGGAGGCGGAGGTTTTGGAATATTGAGCAACGAATGAATGCATAATGACATATATAATGAG
ATATTGTTCGTACAAGCATTCAACCTTCCGCCTTCATCACCAGCCAAGTCCAACAGAAGCCTTCA
CCCAGCCTTAAGCAGACCCGAACCATATGAAATGCATAATGACATAGAGAATATATGCTTTGGCG
GAGGGTTGAACATCTTTCCCTCTCCCCCCTGGTCGAGCGTTCAAA
Found at i:299583 original size:22 final size:22
Alignment explanation
Indices: 299557--299605 Score: 89
Period size: 22 Copynumber: 2.2 Consensus size: 22
299547 TAAGTACGCC
299557 TATAAGAAAGCGTAATGACATA
1 TATAAGAAAGCGTAATGACATA
*
299579 TATAAGAAATCGTAATGACATA
1 TATAAGAAAGCGTAATGACATA
299601 TATAA
1 TATAA
299606 TTCATGACCA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.51, C:0.08, G:0.14, T:0.27
Consensus pattern (22 bp):
TATAAGAAAGCGTAATGACATA
Left flanking sequence: Indices 299057 -- 299556
CATTTTCAGGAGGCGGAGGTTTTGGAATATTGAGCAACGAATGAATGCATAATGACATATATAAT
GAGATATTGTTCGTACAAGCATTCAACCTTCCGCCTTCATCACCAGCCAAGTCCAACAGAAGCCT
TCACCCAGCCTTAAGCAGACCCGAACCATATGAAATGCATAATGACATAGAGAATATATGCTTTG
GCGGAGGGTTGAACATCTTTCCCTCTCCCCCCTGGTCGAGCGTTCAAACCCTACTAATTTGGTCA
TTTTAGCTTGGCGGAGGTTTTGGAATATTGAGCAACGAATGAATGCATAATGACATATATAATGA
ATGTCACTATCTCTGGTCTCGAAGTCACCTCTAAGTCATGAAATATCAGGTTGGAAAAACCACAA
TGACATATCTAATTCATGACTGGATTCGAGAGCGTAATGACATATATAATATATGCATTATCTGC
TAAGGCATAATGACATATCTCATTCATGACCAATATAAGTACGCC
Right flanking sequence: Indices 299606 -- 300105
TTCATGACCAGCAGCCACTCCTCGGCGATAGCCTCTTTTCTTTCCTCAATCCCACCCATTATAGA
CAAAGAGAGATAGAGATAGAACATGCCGATGCCTTAAATAAAAAACCCATTCTGATCGGAACAGA
AGATCTAGTAAATAGAAGGGATGGGTTCTCGGTCCCTTTCGTCTAGTGGTTAGGACATCGTCTCC
TCATGTCGAAGACACGGGTTCGATTCCCGTAGGGGATAGGTAGGTACTCATTCCCGGTCTCATTG
CTGAGTGACAGGCTGAGAAGCACACGCACCTATATGCATATCCATATATCATATCGAGACATCCA
TAGATGGGTAGAAGAGATCTATTTATATCCATATATGCATATATCTACATATATCCACACCCATA
TCCATATATCGATATGGATACAGATATAGATCCATACATAGATACGGATATGGATCTCCATCTTA
CTTACGCGACTTAATACTGGCTGGCCTGGTGGGGGGCTTAAAATG
Found at i:303203 original size:40 final size:40
Alignment explanation
Indices: 303142--303222 Score: 135
Period size: 40 Copynumber: 2.0 Consensus size: 40
303132 CAACTACCGA
* *
303142 TATATGTTATTCCCGTCAACATTACGGCTTATATTATGGG
1 TATATGTTATTCCCGTAAACATTACGACTTATATTATGGG
*
303182 TATATGTTATTCCTGTAAACATTACGACTTATATTATGGG
1 TATATGTTATTCCCGTAAACATTACGACTTATATTATGGG
303222 T
1 T
303223 GGATATTGTA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 38 1.00
ACGTcount: A:0.27, C:0.15, G:0.16, T:0.42
Consensus pattern (40 bp):
TATATGTTATTCCCGTAAACATTACGACTTATATTATGGG
Left flanking sequence: Indices 302642 -- 303141
GGACGAGCCACATGCAGGGAAACTCGCATGTGTGGTTCTGGCCGCCTTCGGTATCTAATAACCAT
GCTTTTGCTCGCCGCTGGCGCACCTCTCCTTGCCCTCCTATTTGTCGAGCAAGGGAATAACCTAA
CTATCGCCCATTTTTTCCGGAATCATTTTTTGAGGAAAGACGATTCTACATATTTTTGCCAAATC
TTTCTATTATTAAGTACGGCTGGTACCATCCTGATGTGTTTCGATTATTTCGAACAAGAGAGGTT
TAATGCTTTCGAATCCATCGTATCAATTCTACCTCCTACTCGCAGTACGCTCTTTATGATCCCGG
CTCATGATTCAATTGCCATGTATTTAGCTATTGAGCCTCAAAGTTCATGTTTTTACGTGATCGCA
GCATCAAAAAGGAACTCTGAATTTCCCACGGAAGCCGGCTCGAAATATTTGATTTTAGGTGCATT
TCCCCCTGGAATATCATTGTTCGGGTACGACCGGACAACTACCGA
Right flanking sequence: Indices 303223 -- 303722
GGATATTGTATCAAATTAGAATTTCCATCCGTTATGGCAATATTAGCCAATATATGAATAGGGGG
GGGGACGAATCTATTTGATTCTATATAGATACATATGTATTGGTATATACAGGTACGTCTAGGTA
TATATGGGTGGGTATATCTACCAAAATCTTTCCCCTCCTCGCCAAACGTCCTTCAGCGATGGCGA
CGGGCGGCTATGTCTTGATCTATATCCCTCCTACGTGCACAAACAATATGAGGGACTCTATAGAG
ATTCCCCTTGGTCTAATCCCACGACGGAGAGTATCCCCGGCGTCAAGTTCGGATTGGGGGGAGTA
GAGCGAAATGGATCTCCTTGGAGGGGTATTCCGAAGGTGTAACCAGGGCAAGGCAACGGCGGGTG
CAAAAAAAAGTGAGTTCCCGATACTGAAACCAGAGGAGCGACCAGTTGGTTCACCAAACCCCAAC
CCAGCGTCACACGATATCCCTCCTGGTCCGACGAAGGGATCCAGT
Found at i:304449 original size:53 final size:53
Alignment explanation
Indices: 304369--304475 Score: 214
Period size: 53 Copynumber: 2.0 Consensus size: 53
304359 GTAGACCTTC
304369 GGTGTCACCTTGGGGAAAGCCCACCAAAGCTGGATTTCGAACAGTAGTGGGGA
1 GGTGTCACCTTGGGGAAAGCCCACCAAAGCTGGATTTCGAACAGTAGTGGGGA
304422 GGTGTCACCTTGGGGAAAGCCCACCAAAGCTGGATTTCGAACAGTAGTGGGGA
1 GGTGTCACCTTGGGGAAAGCCCACCAAAGCTGGATTTCGAACAGTAGTGGGGA
304475 G
1 G
304476 ACGCAGAAAT
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
53 54 1.00
ACGTcount: A:0.26, C:0.21, G:0.35, T:0.19
Consensus pattern (53 bp):
GGTGTCACCTTGGGGAAAGCCCACCAAAGCTGGATTTCGAACAGTAGTGGGGA
Left flanking sequence: Indices 303869 -- 304368
TAGGGACTTCTACCGCGCACGCGCTGGTAAAAACCACCCACCTCGACCGGATCTACCGAACGGAT
CAGGCCCGGTCACGTAAACCACCAGCTTCACCAACCAAATGGTCTTGGACAGAGACCTGCTGCTT
ACTGCCCACGGAAACATCCGATCCCCGATTCGAGAAACCTCACTACTACGGAAGAGAAGCTTGGC
AGGACAAAGCCGGTGGTTAGGCAGACGCCCCATTGTTCGGGGTGTTGCTATGAATCCGGTGGATC
ATCCCCATGGAGGAGGTGAAGGACGCACGAAAGGAGGTAGACCTTCGGTGTCACCTTGGGGAAAG
CCCACCAAAGCTGGATTTCGAACAGTAGTGGGGAGACGCAGAAATCATTTTATGCCACGACGATC
TATATGGAAGGGCAGTTTCGTCGATGCTTTCTCGTCGAAAATGGTGCTATGAATCCGGTGGATCA
TCCCCATGGAGGAGGTGAAGGACGCACGAAAGGAGGTAGACCTTC
Right flanking sequence: Indices 304476 -- 304975
ACGCAGAAATCATTTTATGCCACGACGATCTATATGGAAGGGCAGTTTCGTCGATGCTTTCTCGT
CGAAAATGAGGAGCAAGAGGGAGAATATTTCTAGCAAGTTTCTTTTTCTTTTGGTGCTCCTTATT
TTTGGTTATCTTATTTGTATGAAAATGGGCTTTATGGCCTATTTCCTTTTGGTCCTTTCCAAAGT
TGGGGTCCTTTTGGTAGGGCGAGCCCTCTCTTTCTTTTTCAGAAAAATGGGATGCCCGGGAGGAA
AGACCCTGGCTCTTTTGTTTTCTTTCTGGGCACTCCAGGAGGCTTCTGCCTCCACGCCCCCTTTC
GGGAATGCAGTTTCGCCCGGAAGGGAGCCTGAGCTGGATTTGCGCTTAGGTCCGCCTGGAGTGCA
GGTCGAGGAGCCAGAAGGCCTCTCTCCCGCGGAGAGGCAGCTGATGGAACGCCTGACTAGAGATG
GACGTGATAATCTATCTCTGGACGACATCCAGGCCATGGTGGGTT
Found at i:306178 original size:13 final size:14
Alignment explanation
Indices: 306155--306183 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
306145 TAGACTTACT
306155 TACCGGGTTATACC
1 TACCGGGTTATACC
306169 TACC-GGTTATACC
1 TACCGGGTTATACC
306182 TA
1 TA
306184 TAGTTACCTG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.73
14 4 0.27
ACGTcount: A:0.24, C:0.28, G:0.17, T:0.31
Consensus pattern (14 bp):
TACCGGGTTATACC
Left flanking sequence: Indices 305655 -- 306154
TATGATGGGTCAATTATTTGCTTTATTGGTGTTAACGGTGGCAGCTGCGGAATCTGCTATTGGGT
CGGCCATTCCGGTTATTACTTTCCGAATTCGAAGGACCATTGCAGTAGAATCTATCAATCGCATG
AAGGGTCGAGCAGCACTAATTATTATATTATTAGTTAGGAAGAAAAAGTGGCTTGTTCCCCGCTT
TCTCTCCCATACGGTCGAGCCAGCTTTCGCTTCCTCCGACCAACAAATATGAAGAAGTATACTCC
TCCGACACAAGTGCATATTCCAAAGTTCCCATTACATTGGCTTCCGCCAACCCAACCAACAGTGA
ATTAACAGATAAAGCTAAGCCCCATCCATTATTGATTGACTAACTTACTGATGGAACCCACCTAG
GTGGCTAGCAACACAGGAAATTTTGAAAGTGTTGTTAGAGCTCCTTATTGGGAGTCATTGAAGCA
GTAATCGTTCGTTTTTTATTTATTATATACGTAATTAGACTTACT
Right flanking sequence: Indices 306184 -- 306683
TAGTTACCTGAGTCTATAGTTACCCCCTCACTTATCGAAAGGTTATCCCTTTAGCAGGCAGAGCT
CGAGTTCTAGCCCAGGATCAGGACCTTACGCAGAGCTCAGTCTTTGGGGCCAAGGAAATGATAGG
CCAGGACTTGTACCTGCCTGAGCATAGCGAAGGGTAAACCTTTCGTGTGCTTACTGGCTGGAAGG
AAAGGAGGGGTTGGCCCGGAAATGGGTTTGCTCCAGGGTAGCCCAAGAAGGGGGACTTTAGTTAC
TCGACCAATGGGAGAGACCTTCTTGACTACTTCCCAGGATATATACCGGTGAAATCGACTACTTA
CCGGATATATGCGGGTTAATGAGTTAGGTAAGACCAATTCCAAAGAGGCCAGATCTGAAGTCCTT
ATTTGGTCAAGGTAGCTGAAGTAAGTTCCTTACCTTACGGGAGATGAGTTACAGATAGTAAGTAT
GATCCCCACCAAGGTCCGGAGGGCTTGCGCTTCTGAGGGCAAGGA
Found at i:309277 original size:23 final size:25
Alignment explanation
Indices: 309229--309284 Score: 71
Period size: 23 Copynumber: 2.3 Consensus size: 25
309219 CCAGCGTTAG
*
309229 AGTACTGTTTGCACTTAGATAGAGT
1 AGTACTGCTTGCACTTAGATAGAGT
*
309254 AGTACTGCTTGC-CTT-TATAGAGT
1 AGTACTGCTTGCACTTAGATAGAGT
*
309277 AGAACTGC
1 AGTACTGC
309285 AATAAGTCGG
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
23 14 0.50
24 3 0.11
25 11 0.39
ACGTcount: A:0.27, C:0.16, G:0.23, T:0.34
Consensus pattern (25 bp):
AGTACTGCTTGCACTTAGATAGAGT
Left flanking sequence: Indices 308729 -- 309228
TTCATAGGGCAAGGACAGGTGAGTGTAAGATAACTCGATAGGCCACGTTTCCCTATTGAATTTAC
TACTTTGACAAGCTTTCACGTAGATAAGCAGGCTTGCTCCCTCCTATATGACTATCTCCTCCTTT
CGACACGGTAGATGTATAATTGTGCTAGCGATTCTCTCTATAACCCCCTCTTAAACCCACCCTAT
AATGCATGCATGGAAAGCCGAACCCTTCTGAAACCCGATCTAACAACCCAACTCACATACCACTT
TCATCGGCGGATAACCCGCATGCATACTATAAATAAAAGAAGTAGCTGCTGGGTTATTCTCTTTC
CTTACAGCAGAGTTTCTCCTTCAGCTCCAGATACAATGGACCCTGCATCTAATAAAGTCGCACCA
ACAGCGGATCAAAAGCAAGATTGAGAACCAGCCAGCCCAGCCCACCACCTAACCTACCTATTTTA
GGAACCGCCTTCCTACTTCGAACTTGACTGCTTTCCCAGCGTTAG
Right flanking sequence: Indices 309285 -- 309784
AATAAGTCGGCTTGTAAGTAGGCTTGTACCCACCATCTAAGGGCGCATGCATGGAGGGAGGCTGC
TTCTACGTTGCCGGAGTTGCTCAAAAAAAGGTGCCTGCCTGGGGAACTATTATTTTAGAGATAGA
TCGACCGGCTTCATTGCTTCATTCTAGTACCTTCCTATCCTATCGGAGTGAGGCCGGCATTCCAT
TCAGTTAAGGGTTTTCCCCTTCCTCTCTCTACCTTATGGTCGAGCAAGTGCCTAAAGGCGATGGC
GGCCCTAGTGCGTGAAAAGTTGAAGCCATTGCCAGCGGAAGGCGGAAGCGCGCTCAATTTGACTT
ACAAGAGGCTTTTTTAGCGCCGCCTTTCGAGCTTCTTTTGAAGGGTGCTTTTGGCAGACTTTTAG
TTACAACCCCTATCCGCTGATGTTACCCAGACCTGCAAGCAAATGATTTCCTTCCTTTATGTCGG
CGGGTGCATGGAAAGGCTGCAGGGATTCTTTTTGAATAAACATTT
Found at i:311942 original size:23 final size:23
Alignment explanation
Indices: 311912--311981 Score: 65
Period size: 23 Copynumber: 3.1 Consensus size: 23
311902 CAACCAATAA
311912 ACCAGTTGGACATGTACTTATCT
1 ACCAGTTGGACATGTACTTATCT
* * *
311935 ACCAGTTGCACA-GTTACTAATCC
1 ACCAGTTGGACATG-TACTTATCT
* *
311958 A-C-TTTGGACATGGACTTATCT
1 ACCAGTTGGACATGTACTTATCT
311979 ACC
1 ACC
311982 TAGTGCGTAT
Statistics
Matches: 36, Mismatches: 8, Indels: 7
0.71 0.16 0.14
Matches are distributed among these distances:
21 13 0.36
22 4 0.11
23 19 0.53
ACGTcount: A:0.27, C:0.26, G:0.16, T:0.31
Consensus pattern (23 bp):
ACCAGTTGGACATGTACTTATCT
Left flanking sequence: Indices 311412 -- 311911
AGAGTCAGGCAAGTCCTAAAACCAATAACTAGAGCGGCAAGTAATCACGTTGGAGTAAGGCAAGC
GAGCCAACCCGTCTAAGAGCCAGTCAAAGCGTAAAAGCCAGTTACAGAGCCAATAATGCGTAAAC
CTGACTATCGACATATAAATATGAGGCGTAACTTATGGTGAAGCCGAATTTGAAAAGTGATGTCT
ACCTGAGGTATTGCTCTTATCACCGCCCTTATACCGCTCCTATCATTTTATACCATTATCCGGGT
GGACAAGGCATGAGGAAGACCATCGGCAATCTCATTATATACGATTGAAATAATGAAAGATATAG
GGCTCCAAGGCTCTAGGAAATGGCCTCGGAGCCCCCGTAGGACCTCTTAGATTCTTCATTTTAGA
TTCATTAAAGAAAGAGTTAACCTTGCCCCCGGAGGGACAAGCGGCTTCGCACCTTACTAATATGG
ATTTGAGTTTGAATAAGGAGGCCCCGCGGGGCTAACAACCAATAA
Right flanking sequence: Indices 311982 -- 312481
TAGTGCGTATATCGACCTTTGCGTACACTTATTTACCTTTGCGTATATCGACCTAGTCATCGACC
TTATAATACACCTTGTAATACACCTATCTACCCATTCCACATTGAGGAAAGAACAGATAAGCGCT
CCATTCACCCAGATCTCAATGAGTCCCTATCTGAGTATCTCCAGAAATGTTATACAACTGTATCA
TCCACATAGCACAAATCCGGGTCACACCCAGAAAATCGGGGTCTTACACTCACCCTATATCCCCA
CACAATTAAGGGTCTTCCCTCTACACCCACCCTCTCCACACCCTCTACACGAAGGAAGTCTTTTT
ACATCCCGTTAAAGAAGTCTTTTACTAATGTTACTAATGATTTGCTTTTAGGATGAAGGCCCTCT
CCTTTTAGTTCTTCGAGTTCCTCTCTTTTGGGGCCCCTCCCCCAAAAGAGAGTTGCTCCTCTCCT
TCGTAACCTCAGTCGAGTCCCTCCGGGCCTCTCCTTCGTAACCTC
Found at i:312470 original size:35 final size:35
Alignment explanation
Indices: 312429--312537 Score: 200
Period size: 35 Copynumber: 3.1 Consensus size: 35
312419 GAGAGTTGCT
312429 CCTCTCCTTCGTAACCTCAGTCGAGTCCCTCCGGG
1 CCTCTCCTTCGTAACCTCAGTCGAGTCCCTCCGGG
312464 CCTCTCCTTCGTAACCTCAGTCGAGTCCCTCCGGG
1 CCTCTCCTTCGTAACCTCAGTCGAGTCCCTCCGGG
* *
312499 CCTCTCCCTCGTAACCTCGGTCGAGTCCCTCCGGG
1 CCTCTCCTTCGTAACCTCAGTCGAGTCCCTCCGGG
312534 CCTC
1 CCTC
312538 ACCATATGAA
Statistics
Matches: 72, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 72 1.00
ACGTcount: A:0.10, C:0.45, G:0.20, T:0.25
Consensus pattern (35 bp):
CCTCTCCTTCGTAACCTCAGTCGAGTCCCTCCGGG
Left flanking sequence: Indices 311929 -- 312428
TTATCTACCAGTTGCACAGTTACTAATCCACTTTGGACATGGACTTATCTACCTAGTGCGTATAT
CGACCTTTGCGTACACTTATTTACCTTTGCGTATATCGACCTAGTCATCGACCTTATAATACACC
TTGTAATACACCTATCTACCCATTCCACATTGAGGAAAGAACAGATAAGCGCTCCATTCACCCAG
ATCTCAATGAGTCCCTATCTGAGTATCTCCAGAAATGTTATACAACTGTATCATCCACATAGCAC
AAATCCGGGTCACACCCAGAAAATCGGGGTCTTACACTCACCCTATATCCCCACACAATTAAGGG
TCTTCCCTCTACACCCACCCTCTCCACACCCTCTACACGAAGGAAGTCTTTTTACATCCCGTTAA
AGAAGTCTTTTACTAATGTTACTAATGATTTGCTTTTAGGATGAAGGCCCTCTCCTTTTAGTTCT
TCGAGTTCCTCTCTTTTGGGGCCCCTCCCCCAAAAGAGAGTTGCT
Right flanking sequence: Indices 312538 -- 313037
ACCATATGAATAGTGAGTCCCTCTCCTTATAGTCGAGAGTTCGGCAGGCTCACCCTACCGGGCCT
CTCCTCACACGTTACCTCTCCTTTTAGTCGAGAGTTCGGCTGGCTCACCCTCACCCTGCGGGGCA
AAGACCCGAGGACCCATGCTTAGCTTATCGAGGAAGCTTATTGAGTTAGCTTATCTCTTTGGAGG
AAGGACAGAATGATTACCAAGGTTGGGTTGACCAAGGTTTGCCAAGATCGAGATTGGATTTACAA
CCCAATTCATGAATTATTTACTGAGATTAGCGCACTATAGGATCGACTATAGGATTAGCTTAGGT
ATCGACTATAGGTAATCAAATCATGTGCCGTTTATGGAATCAAGATTAGTGGGATGAACCAAATG
GGCACATCCATGCTCGTAAACAATTCGGTATAGAAACAAATGCTCACATGCATGGGAAGCAACTG
GATAAAGCTAATGCCGTAGAACACGCTCAATGGCCATTCATAGGG
Found at i:316474 original size:32 final size:33
Alignment explanation
Indices: 316438--316611 Score: 191
Period size: 32 Copynumber: 5.4 Consensus size: 33
316428 AGCATCAAGG
316438 AAGCA-GGCTCGACTGATAAGGAGAGGATGCGT
1 AAGCATGGCTCGACTGATAAGGAGAGGATGCGT
* * *
316470 AAGCATGGCTCGAC-CA-ACGGGAGAGGATGCGG
1 AAGCATGGCTCGACTGATA-AGGAGAGGATGCGT
* *
316502 AGGCA-GGCTCGACTGTTAAGGAGAGGATGCGT
1 AAGCATGGCTCGACTGATAAGGAGAGGATGCGT
* * *
316534 AAGCATGGCTCGAC-CA-ACGGGAGAGGATGCGG
1 AAGCATGGCTCGACTGATA-AGGAGAGGATGCGT
* *
316566 AGGCA-GGCTCGACTGTTAAGGAGAGGATGCGT
1 AAGCATGGCTCGACTGATAAGGAGAGGATGCGT
316598 AAGCATGGCTCGAC
1 AAGCATGGCTCGAC
316612 CAACGGGAGA
Statistics
Matches: 114, Mismatches: 19, Indels: 17
0.76 0.13 0.11
Matches are distributed among these distances:
31 18 0.16
32 70 0.61
33 26 0.23
ACGTcount: A:0.28, C:0.19, G:0.39, T:0.14
Consensus pattern (33 bp):
AAGCATGGCTCGACTGATAAGGAGAGGATGCGT
Left flanking sequence: Indices 315938 -- 316437
CGGAGGAGGAGATTCCCGGCCAGAAATAAGTCAGGTGCCCTCCCAGAAGTTAACACGGGTCTGTC
CATCCTTCCCGGTTGGATGTAGTTTTTTATGGCTGGCAAAGAATCTAGATAGTTTAGCTCCATGA
CCAACGGCTATATAGTTTAGCTCCGAATTACCTGCTCTCCGCGTAAAGGATTAGGGGGCCCCAGG
CAATATCAACTATAGATAGGATGCATGGGGTTGGGTGGGCTCAGGCAGTAGGCTTCTCCCTCACT
TAGGCTTCTCCCGGATCTGAACTCAACTACTATCCTGGGGCCATAGCTTCCATACCGTAACCTAG
AACTCCCACCCGGATATATTTGTTACCCCATCCTACAGGGAGGGGGTGAAGGGTGGAGCAGTGGA
GGAAGAGTAAGTCAATTCATCTACCGGGGGTGTGGGCTAGCCTGGAGTTGGAGGCAAGAGGATGC
GTAAGCATGGCTCGACCACCGCCCCCCACCCAATAAGCATCAAGG
Right flanking sequence: Indices 316612 -- 317111
CAACGGGAGAGGATTTCTCGATCCGCAAGAGGATGCCTAACTTTATCTCCTCGATCGTGGGTGAG
GGCAAGGAGAACTTTATCTCTACTGTCCGGTGAAGTTCAGTTGAGTACTGTCCGACCGGGCAAGG
GGTTTACTCCATGGCTGGCAGTGATGACCCCACGGAAGGAAGTAAGGATGGAAGGGTGCAGGATG
AAACGGGGGTAATGAACTAGTTGGGGGTGCGGGTAGGAGGAAGAGAAAGGTAGTGAACTCCCTCC
CGGAAGGAAAGAAGCTCAACGAGGTCGGGATAGCGGCAAACGAACTTACCTTTATGACAGCCAAA
CAATTAGGCCAGCCACCCAGCCAAGAGCCCGGTAGTTAGTTAGGCCAGCCAAGAGAACAAAAGGG
TAGTCTCGTTTCATCGAGTAGCTCCTCCCGGCTATCCTGTATTTTGAGTTAAGGTACAGGGTCCA
TTACTTTTACCTTTGCTACTGGCTGTGCTTCTATGGGGTCATTTA
Found at i:316541 original size:64 final size:64
Alignment explanation
Indices: 316440--316625 Score: 363
Period size: 64 Copynumber: 2.9 Consensus size: 64
316430 CATCAAGGAA
*
316440 GCAGGCTCGACTGATAAGGAGAGGATGCGTAAGCATGGCTCGACCAACGGGAGAGGATGCGGAG
1 GCAGGCTCGACTGTTAAGGAGAGGATGCGTAAGCATGGCTCGACCAACGGGAGAGGATGCGGAG
316504 GCAGGCTCGACTGTTAAGGAGAGGATGCGTAAGCATGGCTCGACCAACGGGAGAGGATGCGGAG
1 GCAGGCTCGACTGTTAAGGAGAGGATGCGTAAGCATGGCTCGACCAACGGGAGAGGATGCGGAG
316568 GCAGGCTCGACTGTTAAGGAGAGGATGCGTAAGCATGGCTCGACCAACGGGAGAGGAT
1 GCAGGCTCGACTGTTAAGGAGAGGATGCGTAAGCATGGCTCGACCAACGGGAGAGGAT
316626 TTCTCGATCC
Statistics
Matches: 121, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
64 121 1.00
ACGTcount: A:0.27, C:0.19, G:0.40, T:0.14
Consensus pattern (64 bp):
GCAGGCTCGACTGTTAAGGAGAGGATGCGTAAGCATGGCTCGACCAACGGGAGAGGATGCGGAG
Left flanking sequence: Indices 315940 -- 316439
GAGGAGGAGATTCCCGGCCAGAAATAAGTCAGGTGCCCTCCCAGAAGTTAACACGGGTCTGTCCA
TCCTTCCCGGTTGGATGTAGTTTTTTATGGCTGGCAAAGAATCTAGATAGTTTAGCTCCATGACC
AACGGCTATATAGTTTAGCTCCGAATTACCTGCTCTCCGCGTAAAGGATTAGGGGGCCCCAGGCA
ATATCAACTATAGATAGGATGCATGGGGTTGGGTGGGCTCAGGCAGTAGGCTTCTCCCTCACTTA
GGCTTCTCCCGGATCTGAACTCAACTACTATCCTGGGGCCATAGCTTCCATACCGTAACCTAGAA
CTCCCACCCGGATATATTTGTTACCCCATCCTACAGGGAGGGGGTGAAGGGTGGAGCAGTGGAGG
AAGAGTAAGTCAATTCATCTACCGGGGGTGTGGGCTAGCCTGGAGTTGGAGGCAAGAGGATGCGT
AAGCATGGCTCGACCACCGCCCCCCACCCAATAAGCATCAAGGAA
Right flanking sequence: Indices 316626 -- 317125
TTCTCGATCCGCAAGAGGATGCCTAACTTTATCTCCTCGATCGTGGGTGAGGGCAAGGAGAACTT
TATCTCTACTGTCCGGTGAAGTTCAGTTGAGTACTGTCCGACCGGGCAAGGGGTTTACTCCATGG
CTGGCAGTGATGACCCCACGGAAGGAAGTAAGGATGGAAGGGTGCAGGATGAAACGGGGGTAATG
AACTAGTTGGGGGTGCGGGTAGGAGGAAGAGAAAGGTAGTGAACTCCCTCCCGGAAGGAAAGAAG
CTCAACGAGGTCGGGATAGCGGCAAACGAACTTACCTTTATGACAGCCAAACAATTAGGCCAGCC
ACCCAGCCAAGAGCCCGGTAGTTAGTTAGGCCAGCCAAGAGAACAAAAGGGTAGTCTCGTTTCAT
CGAGTAGCTCCTCCCGGCTATCCTGTATTTTGAGTTAAGGTACAGGGTCCATTACTTTTACCTTT
GCTACTGGCTGTGCTTCTATGGGGTCATTTACAGCAGGGGTTGAG
Found at i:319118 original size:9 final size:9
Alignment explanation
Indices: 319103--319153 Score: 70
Period size: 9 Copynumber: 5.9 Consensus size: 9
319093 TTATATCGTC
319103 TGCCTATCT
1 TGCCTATCT
*
319112 AGCCTA--T
1 TGCCTATCT
*
319119 TCCCTATCT
1 TGCCTATCT
319128 TGCCTATCT
1 TGCCTATCT
319137 TGCCTATCT
1 TGCCTATCT
319146 TGCCTATC
1 TGCCTATC
319154 CATCTATCCC
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
7 5 0.14
9 31 0.86
ACGTcount: A:0.14, C:0.35, G:0.10, T:0.41
Consensus pattern (9 bp):
TGCCTATCT
Left flanking sequence: Indices 318603 -- 319102
TATTGGCGGCCATGCTTTGTACTCCTTTTTTGCGAGCATGGGTATGCCTACCTCGGGGATGATAT
ATACATACTTGGTTGATGATTGATTGCAGGTACTCTCCAGCTCCTGGACCTCCAATTCATTTCCT
TGCACTAGGAAGCGCAAGCCCCTCCGGGACCTTGCATTTCTTATTATTGTAAAGTGTTTCGGCCA
TCAGTTTCTCTTCTGACCTCACACTTTAGGGGGGCATCTGTTATACCCTTATTTGCCTTCCTAGA
GGTTCATTAGACCCTTACCTTGTTTGCCATGTTGAAACACTTACTTTACTCCTTTCTTGAGCCTC
AGTGTGAACACCATCCCACCTTGCACTACTCTCTAGGGGTGATGGTATTTGTTACATGGATTTTC
CCGCTGTTTATGTGTCTCACCTAGCCTCTCCTGCCTGCCAAACTGATTGAATGGCTTTCCTTGCA
CTCGGAAGCGCAAGACCCTCCGGACCTTCCTTTCCTTATATCGTC
Right flanking sequence: Indices 319154 -- 319653
CATCTATCCCGGTTATTAGAAACAACACAGAACTATAGTCGGGGCTTAAACGCCTTATTCGGTTA
AGGAATCATGGTTCTTCCCGGAATGAATTGCACGGAGAAGAAGCAGCCTGGTCCACCTACACTGA
TGGAACTATAGTCGCCGCCTTCGATCGCCGCAGTTGATTCCCTATCCAGCTACTCGAATTTGAGT
TGTTCCTTCTACCTCCCTTCTACCAGGTTCCTTCAAATGGCTCCCTTCAACACCTTCGACATGGT
TCTCAAGCGCTCTCTCTAGTATACTATACTCGTTGCCCATATCGATTTGGGGTACGGTTCAGCCT
GATCCTTCCAACCTTTTCATAATTCGACGCCTGATCACCGCAGTTGGATCTCGCCTGGTTGAATT
CCGATGCGGTTCGATATGCACCGGTTGGATGGACGGATGGATGTTCGATGCCTGCCGATCGGTTT
GATTGATATGCACCAGTCCGATCTTCAGTGCGTGCCCGCCGATCG
Found at i:320338 original size:25 final size:27
Alignment explanation
Indices: 320304--320372 Score: 106
Period size: 25 Copynumber: 2.6 Consensus size: 27
320294 TGCGTAAGCA
320304 TGCTCGACTGTTAAGGA-CCTTTA-GG
1 TGCTCGACTGTTAAGGACCCTTTAGGG
320329 TGCTCGACTGTTAAGGACCCTTTAGGG
1 TGCTCGACTGTTAAGGACCCTTTAGGG
* *
320356 GGCTCGACTGATAAGGA
1 TGCTCGACTGTTAAGGA
320373 GAGGAGAGGA
Statistics
Matches: 40, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
25 17 0.43
26 6 0.15
27 17 0.43
ACGTcount: A:0.22, C:0.20, G:0.30, T:0.28
Consensus pattern (27 bp):
TGCTCGACTGTTAAGGACCCTTTAGGG
Left flanking sequence: Indices 319804 -- 320303
GTCGAGATGCGAATGTGGCCTATCGAGATGGGAATTGAAGTAAGCAAAGTGGGCGTAGCGAAATG
ATATAGAGTATGAACGCCTCTAAGGACTGGGAAATTCTGTAAGAAAAGTGGGCGGCTTCACCAAG
CGAATATGGGAAATTCAAGAATGAAAGTGGGCGTATGGGAAGTAGCCGGTGATTATGAGTTTGAA
CCTGGCCTACCTATTGAAATTCCCACCTCTCATTAGTCAGTCCTTCTGTCCTCCGACCCTTTCTC
TATTCTTTCCAGCCCACCCATATAGTTATACCTATTATGTCGGTAATTTAGTTACTTATAAGTAG
ACTTATTACGGATTCATAATGTCCCCTATATTTTGATCTAATCAGTTACTTACCAGATATGGGCA
TATGTCATTACGCATCAAAACCTCCGCCTCCTGAAAATGCTATAATAGTAGGGGAATCTTGAAAA
ACCTCCGCCAAGAGAAAATGGCCAAATTAGTAGAATGCGTAAGCA
Right flanking sequence: Indices 320373 -- 320872
GAGGAGAGGATGCGCAAGCAGGCTCGACTGTTAACCCCCCAAACCAATAAGTAAACCCTAACCTT
TAGGTGCTCGACTGTTAAACCCCCCAAACCAATAAGTAAACCCTAACCTTTAGGTGCTCGACCTT
AAGGGAGAGGGAGAGGAGAGGATGCACAAGCAGGCTCTCAATCTAAGGAGAGGACCGGAGGGGCT
CTCAATCTAGCCCCCCCACCCAATAAGTAAACCCTAATGCACAAGCAGGCTCGACTGATAAGGAG
AGGACCGGAGGGGCTCGACCATAAGGATGCGCAAGCAGGCTCGACTGTTAGGGTTTACTTATTGG
GTGGGGCAATAAGTAAACCCTAACCTTTAGGTGCTCGACCTTAAGGACCTTTAGGTGCTCGACTG
TTAAGGATGCGCAAGCATGCTCGACTGTTAACCCCCCAAACCAATAAGTAAACCCTAACCTTTAG
GTGCTCGACCCCAGGTTGACTTATTGGGTGGGCCAATAAGTAAAC
Found at i:320370 original size:27 final size:25
Alignment explanation
Indices: 320305--320372 Score: 100
Period size: 27 Copynumber: 2.6 Consensus size: 25
320295 GCGTAAGCAT
*
320305 GCTCGACTGTTAAGGACCTTTAGGT
1 GCTCGACTGTTAAGGACCTTTAGGG
320330 GCTCGACTGTTAAGGACCCTTTAGGGG
1 GCTCGACTGTTAAGGA-CCTTTA-GGG
*
320357 GCTCGACTGATAAGGA
1 GCTCGACTGTTAAGGA
320373 GAGGAGAGGA
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
25 16 0.41
26 6 0.15
27 17 0.44
ACGTcount: A:0.22, C:0.21, G:0.31, T:0.26
Consensus pattern (25 bp):
GCTCGACTGTTAAGGACCTTTAGGG
Left flanking sequence: Indices 319805 -- 320304
TCGAGATGCGAATGTGGCCTATCGAGATGGGAATTGAAGTAAGCAAAGTGGGCGTAGCGAAATGA
TATAGAGTATGAACGCCTCTAAGGACTGGGAAATTCTGTAAGAAAAGTGGGCGGCTTCACCAAGC
GAATATGGGAAATTCAAGAATGAAAGTGGGCGTATGGGAAGTAGCCGGTGATTATGAGTTTGAAC
CTGGCCTACCTATTGAAATTCCCACCTCTCATTAGTCAGTCCTTCTGTCCTCCGACCCTTTCTCT
ATTCTTTCCAGCCCACCCATATAGTTATACCTATTATGTCGGTAATTTAGTTACTTATAAGTAGA
CTTATTACGGATTCATAATGTCCCCTATATTTTGATCTAATCAGTTACTTACCAGATATGGGCAT
ATGTCATTACGCATCAAAACCTCCGCCTCCTGAAAATGCTATAATAGTAGGGGAATCTTGAAAAA
CCTCCGCCAAGAGAAAATGGCCAAATTAGTAGAATGCGTAAGCAT
Right flanking sequence: Indices 320373 -- 320872
GAGGAGAGGATGCGCAAGCAGGCTCGACTGTTAACCCCCCAAACCAATAAGTAAACCCTAACCTT
TAGGTGCTCGACTGTTAAACCCCCCAAACCAATAAGTAAACCCTAACCTTTAGGTGCTCGACCTT
AAGGGAGAGGGAGAGGAGAGGATGCACAAGCAGGCTCTCAATCTAAGGAGAGGACCGGAGGGGCT
CTCAATCTAGCCCCCCCACCCAATAAGTAAACCCTAATGCACAAGCAGGCTCGACTGATAAGGAG
AGGACCGGAGGGGCTCGACCATAAGGATGCGCAAGCAGGCTCGACTGTTAGGGTTTACTTATTGG
GTGGGGCAATAAGTAAACCCTAACCTTTAGGTGCTCGACCTTAAGGACCTTTAGGTGCTCGACTG
TTAAGGATGCGCAAGCATGCTCGACTGTTAACCCCCCAAACCAATAAGTAAACCCTAACCTTTAG
GTGCTCGACCCCAGGTTGACTTATTGGGTGGGCCAATAAGTAAAC
Found at i:320451 original size:49 final size:50
Alignment explanation
Indices: 320394--320499 Score: 205
Period size: 50 Copynumber: 2.1 Consensus size: 50
320384 GCGCAAGCAG
320394 GCTCGACTGTT-AACCCCCCAAACCAATAAGTAAACCCTAACCTTTAGGT
1 GCTCGACTGTTAAACCCCCCAAACCAATAAGTAAACCCTAACCTTTAGGT
320443 GCTCGACTGTTAAACCCCCCAAACCAATAAGTAAACCCTAACCTTTAGGT
1 GCTCGACTGTTAAACCCCCCAAACCAATAAGTAAACCCTAACCTTTAGGT
320493 GCTCGAC
1 GCTCGAC
320500 CTTAAGGGAG
Statistics
Matches: 56, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
49 11 0.20
50 45 0.80
ACGTcount: A:0.32, C:0.33, G:0.13, T:0.22
Consensus pattern (50 bp):
GCTCGACTGTTAAACCCCCCAAACCAATAAGTAAACCCTAACCTTTAGGT
Left flanking sequence: Indices 319894 -- 320393
ACTGGGAAATTCTGTAAGAAAAGTGGGCGGCTTCACCAAGCGAATATGGGAAATTCAAGAATGAA
AGTGGGCGTATGGGAAGTAGCCGGTGATTATGAGTTTGAACCTGGCCTACCTATTGAAATTCCCA
CCTCTCATTAGTCAGTCCTTCTGTCCTCCGACCCTTTCTCTATTCTTTCCAGCCCACCCATATAG
TTATACCTATTATGTCGGTAATTTAGTTACTTATAAGTAGACTTATTACGGATTCATAATGTCCC
CTATATTTTGATCTAATCAGTTACTTACCAGATATGGGCATATGTCATTACGCATCAAAACCTCC
GCCTCCTGAAAATGCTATAATAGTAGGGGAATCTTGAAAAACCTCCGCCAAGAGAAAATGGCCAA
ATTAGTAGAATGCGTAAGCATGCTCGACTGTTAAGGACCTTTAGGTGCTCGACTGTTAAGGACCC
TTTAGGGGGCTCGACTGATAAGGAGAGGAGAGGATGCGCAAGCAG
Right flanking sequence: Indices 320500 -- 320999
CTTAAGGGAGAGGGAGAGGAGAGGATGCACAAGCAGGCTCTCAATCTAAGGAGAGGACCGGAGGG
GCTCTCAATCTAGCCCCCCCACCCAATAAGTAAACCCTAATGCACAAGCAGGCTCGACTGATAAG
GAGAGGACCGGAGGGGCTCGACCATAAGGATGCGCAAGCAGGCTCGACTGTTAGGGTTTACTTAT
TGGGTGGGGCAATAAGTAAACCCTAACCTTTAGGTGCTCGACCTTAAGGACCTTTAGGTGCTCGA
CTGTTAAGGATGCGCAAGCATGCTCGACTGTTAACCCCCCAAACCAATAAGTAAACCCTAACCTT
TAGGTGCTCGACCCCAGGTTGACTTATTGGGTGGGCCAATAAGTAAACCCAAGAGGGAGAGGGAG
AGTTGAGTGAGTGAGAAAGGGAGAGATATGCCGTCACTCTATTATATATGTCATTTCGGTTAGCT
GGCTCGGGATCAATAGGTCCAATATTGCCGGTGCATTCACTAGTT
Found at i:320752 original size:24 final size:25
Alignment explanation
Indices: 320720--320769 Score: 84
Period size: 24 Copynumber: 2.0 Consensus size: 25
320710 GTAAACCCTA
320720 ACCTTTAGGTGCTCGAC-CTTAAGG
1 ACCTTTAGGTGCTCGACTCTTAAGG
*
320744 ACCTTTAGGTGCTCGACTGTTAAGG
1 ACCTTTAGGTGCTCGACTCTTAAGG
320769 A
1 A
320770 TGCGCAAGCA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
24 17 0.71
25 7 0.29
ACGTcount: A:0.22, C:0.22, G:0.26, T:0.30
Consensus pattern (25 bp):
ACCTTTAGGTGCTCGACTCTTAAGG
Left flanking sequence: Indices 320220 -- 320719
CCTCCTGAAAATGCTATAATAGTAGGGGAATCTTGAAAAACCTCCGCCAAGAGAAAATGGCCAAA
TTAGTAGAATGCGTAAGCATGCTCGACTGTTAAGGACCTTTAGGTGCTCGACTGTTAAGGACCCT
TTAGGGGGCTCGACTGATAAGGAGAGGAGAGGATGCGCAAGCAGGCTCGACTGTTAACCCCCCAA
ACCAATAAGTAAACCCTAACCTTTAGGTGCTCGACTGTTAAACCCCCCAAACCAATAAGTAAACC
CTAACCTTTAGGTGCTCGACCTTAAGGGAGAGGGAGAGGAGAGGATGCACAAGCAGGCTCTCAAT
CTAAGGAGAGGACCGGAGGGGCTCTCAATCTAGCCCCCCCACCCAATAAGTAAACCCTAATGCAC
AAGCAGGCTCGACTGATAAGGAGAGGACCGGAGGGGCTCGACCATAAGGATGCGCAAGCAGGCTC
GACTGTTAGGGTTTACTTATTGGGTGGGGCAATAAGTAAACCCTA
Right flanking sequence: Indices 320770 -- 321269
TGCGCAAGCATGCTCGACTGTTAACCCCCCAAACCAATAAGTAAACCCTAACCTTTAGGTGCTCG
ACCCCAGGTTGACTTATTGGGTGGGCCAATAAGTAAACCCAAGAGGGAGAGGGAGAGTTGAGTGA
GTGAGAAAGGGAGAGATATGCCGTCACTCTATTATATATGTCATTTCGGTTAGCTGGCTCGGGAT
CAATAGGTCCAATATTGCCGGTGCATTCACTAGTTATGATTCAACAATGACATAACTATCATGCC
GTATCTAGCCACTAGAATCTATCTCATTATGTGATCGGTTCATTCATTATATATGTCATTATGCA
TTCATTCCCACTTCCTAACCTTCATTACTGATCAAAACCTCCGCCTCCTCGTGGGGCAAGAATAG
GACCTTTAGGTGCTCGACCATTAGGACCTTTAGGTGCTCGACTGTTAAGGATGCGCAAGCATGCT
CGACTGTTAACCCCCCAACACAATAAGTAAACCCTAACCTTTAGG
Found at i:321336 original size:9 final size:11
Alignment explanation
Indices: 321307--321333 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
321297 TCGACTGTTA
321307 AGGAGAGGGAG
1 AGGAGAGGGAG
321318 AGGAGAGGGAG
1 AGGAGAGGGAG
321329 AGGAG
1 AGGAG
321334 GGAAAGATGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.37, C:0.00, G:0.63, T:0.00
Consensus pattern (11 bp):
AGGAGAGGGAG
Left flanking sequence: Indices 320807 -- 321306
TAAGTAAACCCTAACCTTTAGGTGCTCGACCCCAGGTTGACTTATTGGGTGGGCCAATAAGTAAA
CCCAAGAGGGAGAGGGAGAGTTGAGTGAGTGAGAAAGGGAGAGATATGCCGTCACTCTATTATAT
ATGTCATTTCGGTTAGCTGGCTCGGGATCAATAGGTCCAATATTGCCGGTGCATTCACTAGTTAT
GATTCAACAATGACATAACTATCATGCCGTATCTAGCCACTAGAATCTATCTCATTATGTGATCG
GTTCATTCATTATATATGTCATTATGCATTCATTCCCACTTCCTAACCTTCATTACTGATCAAAA
CCTCCGCCTCCTCGTGGGGCAAGAATAGGACCTTTAGGTGCTCGACCATTAGGACCTTTAGGTGC
TCGACTGTTAAGGATGCGCAAGCATGCTCGACTGTTAACCCCCCAACACAATAAGTAAACCCTAA
CCTTTAGGTGCTCGACCCTAAGGACCTTTAGGTGCTCGACTGTTA
Right flanking sequence: Indices 321334 -- 321833
GGAAAGATGTTCAAACCTCCGCCTCCTCTCCTCTCCTCTCCTTATCAGTCGAGCAACTCAAGTTC
CTCTCCTTATCAGTCGAGCAACTCAAGTTCCTCTCCTTATCAGTCGAGCCCCTCACCATCGGAAT
AGTGAGTGACCCCTAAATAATATAGGGCCCTCCGGTCCTGAAAATGGCAAAATAGGAGCTAAAAG
TTCAAAAACCTCCGCCGCTGATACACCATCAAGAATCAACATAGGTAGGTGAGAGGGAACGACCC
GGGCGGGGAGCTGTCAAGGTCTGTTAGGTTCTTTCATATAAACAAAGGTAGGTGAGAGGGGGCCC
AGTTCTATAAGTCACGTAGTCGCTTGTCCGCTTATTAATCGGGCAAGGTAGGAAAATGGGAAGAT
TGAGGTTCTGGGGTTCTGGGAGAGGATTCAAGCTAGTGGTCTTTATCTCCTTCCTAGGAATAGGG
CTCACAGTATGATATGTGATAGTCGTGCTCAAGGTAGCAGTAGAG
Found at i:321403 original size:30 final size:30
Alignment explanation
Indices: 321367--321447 Score: 162
Period size: 30 Copynumber: 2.7 Consensus size: 30
321357 TCCTCTCCTC
321367 TCCTCTCCTTATCAGTCGAGCAACTCAAGT
1 TCCTCTCCTTATCAGTCGAGCAACTCAAGT
321397 TCCTCTCCTTATCAGTCGAGCAACTCAAGT
1 TCCTCTCCTTATCAGTCGAGCAACTCAAGT
321427 TCCTCTCCTTATCAGTCGAGC
1 TCCTCTCCTTATCAGTCGAGC
321448 CCCTCACCAT
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 51 1.00
ACGTcount: A:0.21, C:0.35, G:0.14, T:0.31
Consensus pattern (30 bp):
TCCTCTCCTTATCAGTCGAGCAACTCAAGT
Left flanking sequence: Indices 320867 -- 321366
GTAAACCCAAGAGGGAGAGGGAGAGTTGAGTGAGTGAGAAAGGGAGAGATATGCCGTCACTCTAT
TATATATGTCATTTCGGTTAGCTGGCTCGGGATCAATAGGTCCAATATTGCCGGTGCATTCACTA
GTTATGATTCAACAATGACATAACTATCATGCCGTATCTAGCCACTAGAATCTATCTCATTATGT
GATCGGTTCATTCATTATATATGTCATTATGCATTCATTCCCACTTCCTAACCTTCATTACTGAT
CAAAACCTCCGCCTCCTCGTGGGGCAAGAATAGGACCTTTAGGTGCTCGACCATTAGGACCTTTA
GGTGCTCGACTGTTAAGGATGCGCAAGCATGCTCGACTGTTAACCCCCCAACACAATAAGTAAAC
CCTAACCTTTAGGTGCTCGACCCTAAGGACCTTTAGGTGCTCGACTGTTAAGGAGAGGGAGAGGA
GAGGGAGAGGAGGGAAAGATGTTCAAACCTCCGCCTCCTCTCCTC
Right flanking sequence: Indices 321448 -- 321947
CCCTCACCATCGGAATAGTGAGTGACCCCTAAATAATATAGGGCCCTCCGGTCCTGAAAATGGCA
AAATAGGAGCTAAAAGTTCAAAAACCTCCGCCGCTGATACACCATCAAGAATCAACATAGGTAGG
TGAGAGGGAACGACCCGGGCGGGGAGCTGTCAAGGTCTGTTAGGTTCTTTCATATAAACAAAGGT
AGGTGAGAGGGGGCCCAGTTCTATAAGTCACGTAGTCGCTTGTCCGCTTATTAATCGGGCAAGGT
AGGAAAATGGGAAGATTGAGGTTCTGGGGTTCTGGGAGAGGATTCAAGCTAGTGGTCTTTATCTC
CTTCCTAGGAATAGGGCTCACAGTATGATATGTGATAGTCGTGCTCAAGGTAGCAGTAGAGAGTA
TAGTTGTGCTCCAGGTAGATGTCGATGTGGAGGTCAAGGTCGAGGTCAAGGTGAACATAGCCGGC
CGGCTGAGGGTTCAAGGCCGGTGTAGTAGAAGGTAATATACTGAG
Found at i:328997 original size:21 final size:21
Alignment explanation
Indices: 328956--328997 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
328946 TGAAATGAAC
*
328956 CCTTGTCCTATCAGAATAGAT
1 CCTTGTCCTATCAGAAGAGAT
*
328977 CCTTGTCCTATCAGAGGAGAT
1 CCTTGTCCTATCAGAAGAGAT
328998 AAGGTCACAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.31
Consensus pattern (21 bp):
CCTTGTCCTATCAGAAGAGAT
Left flanking sequence: Indices 328456 -- 328955
ACGTGAAAAATGCCTGGTCCACCTAAGTGGGGACTGTACGCTGAGCCATACCAGTTCATGAAAAA
GCTAAGCCTGTTACCTCATAAGCTTGCCCAGCCTTATACCTTAGCAGCGATCTAAGCCTACTACC
GTAGCTAGCTTGGTGTTGATAGCTTTATCAGTAGTAGTGCTTAGCCCTAGCCCTTGTGTATCGAT
GTGCTAGTTGCTCTGTGTATATTTTTTTGAGTGTAGCTTGATCTCTGTATCTTGCCCACCCCTGC
TGGCTATGCCTGTGCTCTAGCTGCTTTCACTCGGGCAACTTCAATTTCTAATGCAACTTTCACTC
CTGCCCTTGCCCGCTCACATCCTTTCAACCAACCTACGGGACAACCAACCATAGCTTTTCATTGA
TAGATTAGCCGCTCAGTCTAGCGAGGCTCGCCCATAGTACTTTGCAGGCCGATTAGCCCTCGCCC
CGCTACTAACCCATGATTAAGAGCGCCTCATCCAATGAAATGAAC
Right flanking sequence: Indices 328998 -- 329497
AAGGTCACATCCGCAACCCTGCCCTACCTATCCCGGATTCGTTAAGTCATGGTAATAAGTTGACC
CGAAATCCCCGGCTCGACCAATACTTTTCTTGATTGCTTGCACCTCAATCGGGAAGCTCGACCAT
AGCCTATAGGTACTTGCCCGAGCGTAGCGTAGCGTAGTTCATTGTCAGTGCAGCCACTTACCCGA
GAATCTTACCCGCTTACCCGAGACGATAATCTTACCCGAGCCCGAGAATAGCATTGAAGATATTC
ATTGTCACAGCGTACAAGATATGAATCATCAACGTAGAAGATGTTAATAAGAAACTCACGGGACC
AAACCCATAGGCCTAACTAGATTGTTATCAAGGAAACTACAGGCAGGCGATAGTCAGCTTTCAAC
ACGCTATCTCTATAACTATGAGAGTTCGAACATCACTATTAGTGTATATAACTATGATGTGTTAA
TTAGGTTCATACTGTGTTATATTAAACATGCTTGATTAGCTGTAA
Found at i:333446 original size:20 final size:20
Alignment explanation
Indices: 333421--333460 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
333411 TCCTTTCTAT
333421 ACCGGCTCAAAGACCTCAAC
1 ACCGGCTCAAAGACCTCAAC
333441 ACCGGCTCAAAGACCTCAAC
1 ACCGGCTCAAAGACCTCAAC
333461 TTAGAGCTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.35, C:0.40, G:0.15, T:0.10
Consensus pattern (20 bp):
ACCGGCTCAAAGACCTCAAC
Left flanking sequence: Indices 332921 -- 333420
TCATATATTTTTTACAGCTACCAACCAACACCCTGTATCTTTAGAACCCTTGATATACCGGCTTA
CCTGCTAACTTAAAGCATTCATTGCATGAGTGGGCTTTGAATACACTTGCTTGAGGAACGAAGTG
TGGTAGGGTAGCAGCACTATACCTTCTTTTGTAGGGCCCGGGCTTAACCCATAGATTCTTTATTT
CTATTTTTACAGCACCTTATTTGATTTGCACAACCCCAGCTTTTAGAAGAAGTGCAGAATCCAAC
TACTTTCACACATGCCCAGATTGCCTTTTAGGGAGGACCTGCTTATTCCTATTTGATCAATTTGA
GTTTGACAGACGCTACTAACTGTTGTGGATTGGATCCTCACAACTGCCTGAAGAGAGAGATAAGA
GGGAGGTAGACACTTAGACGACCATTTGCTTTCGCACCTTTATAAGCCTACATAATGAATGAATT
AATGAATTGTTACTCACAACCTGTTGTGTTCACCATCCTTTCTAT
Right flanking sequence: Indices 333461 -- 333960
TTAGAGCTTTGCTATTCACCGCTACGCCCCAGCTGCCTCACGAAACTTAGTTATTGAACCGAACG
AACCGGCTGGGCTGCTTGCTTAGGCACTTTGACAAGTCTTATTTACTTGATCAGCCTACCTTACC
CTTTGACTTATGAGCATGCTCCTGTTCTGTTTACCAGACTCACCACGGATACCTACTTAGAAAAT
GGAGGGAGGAACAGACTTGTCTGAATAAACCTTCTTTAGACATAATTTGTCCCCCACTAAACGCT
CATATGGGATCTTCTTGAGAAACTTACCGCTCCGCCTCTTCGATCCTCACCGCTGCGCGCTTCTT
CTCTTATGTTGCCCCCTTAGTTTTTGGAATACTCTACCAACAGATGTGCCTTCCTATCAGTCGAT
ATCTCCATGAGTGAGCATGCTGCGGGCTTTCTCGAAAGGGCATCGGCGGGTTATCAAATAACTTG
AGTAATCCATATGCAGCAAGATGACCACGGACCACCTGGTCCCTC
Found at i:335496 original size:24 final size:24
Alignment explanation
Indices: 335464--335528 Score: 130
Period size: 24 Copynumber: 2.7 Consensus size: 24
335454 ATCCTTAACA
335464 GTCGAGCACCTAAAGGTCCTTATG
1 GTCGAGCACCTAAAGGTCCTTATG
335488 GTCGAGCACCTAAAGGTCCTTATG
1 GTCGAGCACCTAAAGGTCCTTATG
335512 GTCGAGCACCTAAAGGT
1 GTCGAGCACCTAAAGGT
335529 TAGGGTTTAC
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 41 1.00
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (24 bp):
GTCGAGCACCTAAAGGTCCTTATG
Left flanking sequence: Indices 334964 -- 335463
TGCCTTTTAGGGAGATATTCCCTTCCCCACCACGCCCAGGTACCGGGAGCAATATAGTGCCTTTT
ATACCTCCCTCTCCTAGCGGGGTCGAGAGAGGCGCATCTTATATAAGAGATTTGCTGATTTCATT
AGGTGATTTCAAGGCTGCAACTACCGCAACATATATAAATAAATATTGAATTTCCCGTATGAAAG
GTACCAAAAAACAACTCTAATTTACCCCAATTTCACGGACAAACAGGAAGATTCCAATTCCGGAT
TCAACTCACCGCATCTTATATAAGAGATTGGTTCATTGGCGGAGGTTTTTCAAGATTTCCCTCTC
CTCTCCTCTCGATGGCGGCCCTCTCCTCTCCCTCTCCCTTAAGGTCGAGCACCTAAAGGTCCTCT
CCTTATCAGTCGAGCCTGCTTACGCATCCTTAGGGTCGAGCACCTAAAGGTTAGGGTTTACTTAT
TGGGTTGGGGGGTTAACAGTCGAGCATGCTTGCGCATCCTTAACA
Right flanking sequence: Indices 335529 -- 336028
TAGGGTTTACTTATTGGGTTGGGGGGTTAACAGTCGAGCATGCTTGCGCATCCTTAACAGTCGAG
CACCTAAAGGTTAGGGTTTACTTATTGGGTTGGGGGGTTAACAGTCGAGCATGCTTGCGCATCCT
TAACAGTCGAGCCTGCTTGCGCATCCTTAACAGTCGAGCATGCTTACGCATCCTACTAATTTGGC
CATTTTAGCTTGGCGGAGGTTTTTCAAGATTTCCCTACTATTATAGCATTTTCAGGAGGCGGAGG
TTTTGTAATGACATATATAAAGAATGAACCAATCTCTCCTCTCCTTATCAGTCGAGCCGATGGCG
GCCTTATTAGTCGAGCGTGCTACGCACCCTGACGGACCTAATCAGATCAGTGACAATCTTTCTCA
CGGAATTACCTATCTCATCCTGACATGATGCCATTGAGAGAGATCGATTTGGTTCATTTCGACCA
GTGATTCCAGTCATGAATGAGATCTATTATATATGTCATTTATTA
Found at i:335560 original size:124 final size:124
Alignment explanation
Indices: 335380--335604 Score: 441
Period size: 124 Copynumber: 1.8 Consensus size: 124
335370 TGCTTACGCA
335380 TCCTTAGGGTCGAGCACCTAAAGGTTAGGGTTTACTTATTGGGTTGGGGGGTTAACAGTCGAGCA
1 TCCTTAGGGTCGAGCACCTAAAGGTTAGGGTTTACTTATTGGGTTGGGGGGTTAACAGTCGAGCA
335445 TGCTTGCGCATCCTTAACAGTCGAGCACCTAAAGGTCCTTATGGTCGAGCACCTAAAGG
66 TGCTTGCGCATCCTTAACAGTCGAGCACCTAAAGGTCCTTATGGTCGAGCACCTAAAGG
*
335504 TCCTTATGGTCGAGCACCTAAAGGTTAGGGTTTACTTATTGGGTTGGGGGGTTAACAGTCGAGCA
1 TCCTTAGGGTCGAGCACCTAAAGGTTAGGGTTTACTTATTGGGTTGGGGGGTTAACAGTCGAGCA
335569 TGCTTGCGCATCCTTAACAGTCGAGCACCTAAAGGT
66 TGCTTGCGCATCCTTAACAGTCGAGCACCTAAAGGT
335605 TAGGGTTTAC
Statistics
Matches: 100, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
124 100 1.00
ACGTcount: A:0.23, C:0.20, G:0.29, T:0.28
Consensus pattern (124 bp):
TCCTTAGGGTCGAGCACCTAAAGGTTAGGGTTTACTTATTGGGTTGGGGGGTTAACAGTCGAGCA
TGCTTGCGCATCCTTAACAGTCGAGCACCTAAAGGTCCTTATGGTCGAGCACCTAAAGG
Left flanking sequence: Indices 334880 -- 335379
GATGGGTGTTTATCGAGCGAGAAAGCGATGGCGGCCTTATAAGTCGAGCCTGCTTACGCATCCTA
AGAAGGGTGAGCAATATAGTGCCTTTTAGGGAGATATTCCCTTCCCCACCACGCCCAGGTACCGG
GAGCAATATAGTGCCTTTTATACCTCCCTCTCCTAGCGGGGTCGAGAGAGGCGCATCTTATATAA
GAGATTTGCTGATTTCATTAGGTGATTTCAAGGCTGCAACTACCGCAACATATATAAATAAATAT
TGAATTTCCCGTATGAAAGGTACCAAAAAACAACTCTAATTTACCCCAATTTCACGGACAAACAG
GAAGATTCCAATTCCGGATTCAACTCACCGCATCTTATATAAGAGATTGGTTCATTGGCGGAGGT
TTTTCAAGATTTCCCTCTCCTCTCCTCTCGATGGCGGCCCTCTCCTCTCCCTCTCCCTTAAGGTC
GAGCACCTAAAGGTCCTCTCCTTATCAGTCGAGCCTGCTTACGCA
Right flanking sequence: Indices 335605 -- 336104
TAGGGTTTACTTATTGGGTTGGGGGGTTAACAGTCGAGCATGCTTGCGCATCCTTAACAGTCGAG
CCTGCTTGCGCATCCTTAACAGTCGAGCATGCTTACGCATCCTACTAATTTGGCCATTTTAGCTT
GGCGGAGGTTTTTCAAGATTTCCCTACTATTATAGCATTTTCAGGAGGCGGAGGTTTTGTAATGA
CATATATAAAGAATGAACCAATCTCTCCTCTCCTTATCAGTCGAGCCGATGGCGGCCTTATTAGT
CGAGCGTGCTACGCACCCTGACGGACCTAATCAGATCAGTGACAATCTTTCTCACGGAATTACCT
ATCTCATCCTGACATGATGCCATTGAGAGAGATCGATTTGGTTCATTTCGACCAGTGATTCCAGT
CATGAATGAGATCTATTATATATGTCATTTATTACATGTCTCATAGAAGGTCTGATGAGGGTAGG
CATGAGGAGATTGGAGGTCTAATGAGGAAAAGACTGCCTGCCTAT
Found at i:335611 original size:76 final size:76
Alignment explanation
Indices: 335512--335670 Score: 318
Period size: 76 Copynumber: 2.1 Consensus size: 76
335502 GGTCCTTATG
335512 GTCGAGCACCTAAAGGTTAGGGTTTACTTATTGGGTTGGGGGGTTAACAGTCGAGCATGCTTGCG
1 GTCGAGCACCTAAAGGTTAGGGTTTACTTATTGGGTTGGGGGGTTAACAGTCGAGCATGCTTGCG
335577 CATCCTTAACA
66 CATCCTTAACA
335588 GTCGAGCACCTAAAGGTTAGGGTTTACTTATTGGGTTGGGGGGTTAACAGTCGAGCATGCTTGCG
1 GTCGAGCACCTAAAGGTTAGGGTTTACTTATTGGGTTGGGGGGTTAACAGTCGAGCATGCTTGCG
335653 CATCCTTAACA
66 CATCCTTAACA
335664 GTCGAGC
1 GTCGAGC
335671 CTGCTTGCGC
Statistics
Matches: 83, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
76 83 1.00
ACGTcount: A:0.22, C:0.19, G:0.31, T:0.28
Consensus pattern (76 bp):
GTCGAGCACCTAAAGGTTAGGGTTTACTTATTGGGTTGGGGGGTTAACAGTCGAGCATGCTTGCG
CATCCTTAACA
Left flanking sequence: Indices 335012 -- 335511
GCAATATAGTGCCTTTTATACCTCCCTCTCCTAGCGGGGTCGAGAGAGGCGCATCTTATATAAGA
GATTTGCTGATTTCATTAGGTGATTTCAAGGCTGCAACTACCGCAACATATATAAATAAATATTG
AATTTCCCGTATGAAAGGTACCAAAAAACAACTCTAATTTACCCCAATTTCACGGACAAACAGGA
AGATTCCAATTCCGGATTCAACTCACCGCATCTTATATAAGAGATTGGTTCATTGGCGGAGGTTT
TTCAAGATTTCCCTCTCCTCTCCTCTCGATGGCGGCCCTCTCCTCTCCCTCTCCCTTAAGGTCGA
GCACCTAAAGGTCCTCTCCTTATCAGTCGAGCCTGCTTACGCATCCTTAGGGTCGAGCACCTAAA
GGTTAGGGTTTACTTATTGGGTTGGGGGGTTAACAGTCGAGCATGCTTGCGCATCCTTAACAGTC
GAGCACCTAAAGGTCCTTATGGTCGAGCACCTAAAGGTCCTTATG
Right flanking sequence: Indices 335671 -- 336170
CTGCTTGCGCATCCTTAACAGTCGAGCATGCTTACGCATCCTACTAATTTGGCCATTTTAGCTTG
GCGGAGGTTTTTCAAGATTTCCCTACTATTATAGCATTTTCAGGAGGCGGAGGTTTTGTAATGAC
ATATATAAAGAATGAACCAATCTCTCCTCTCCTTATCAGTCGAGCCGATGGCGGCCTTATTAGTC
GAGCGTGCTACGCACCCTGACGGACCTAATCAGATCAGTGACAATCTTTCTCACGGAATTACCTA
TCTCATCCTGACATGATGCCATTGAGAGAGATCGATTTGGTTCATTTCGACCAGTGATTCCAGTC
ATGAATGAGATCTATTATATATGTCATTTATTACATGTCTCATAGAAGGTCTGATGAGGGTAGGC
ATGAGGAGATTGGAGGTCTAATGAGGAAAAGACTGCCTGCCTATTCAACTGGCTGGCTTTTGAAC
TGCTGCTTTATCCATTGCCTATGCCTTCGCTACCTATACTGATTC
Found at i:335669 original size:27 final size:27
Alignment explanation
Indices: 335631--335712 Score: 146
Period size: 27 Copynumber: 3.0 Consensus size: 27
335621 GGTTGGGGGG
335631 TTAACAGTCGAGCATGCTTGCGCATCC
1 TTAACAGTCGAGCATGCTTGCGCATCC
*
335658 TTAACAGTCGAGCCTGCTTGCGCATCC
1 TTAACAGTCGAGCATGCTTGCGCATCC
*
335685 TTAACAGTCGAGCATGCTTACGCATCC
1 TTAACAGTCGAGCATGCTTGCGCATCC
335712 T
1 T
335713 ACTAATTTGG
Statistics
Matches: 52, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
27 52 1.00
ACGTcount: A:0.22, C:0.30, G:0.21, T:0.27
Consensus pattern (27 bp):
TTAACAGTCGAGCATGCTTGCGCATCC
Left flanking sequence: Indices 335131 -- 335630
AATAAATATTGAATTTCCCGTATGAAAGGTACCAAAAAACAACTCTAATTTACCCCAATTTCACG
GACAAACAGGAAGATTCCAATTCCGGATTCAACTCACCGCATCTTATATAAGAGATTGGTTCATT
GGCGGAGGTTTTTCAAGATTTCCCTCTCCTCTCCTCTCGATGGCGGCCCTCTCCTCTCCCTCTCC
CTTAAGGTCGAGCACCTAAAGGTCCTCTCCTTATCAGTCGAGCCTGCTTACGCATCCTTAGGGTC
GAGCACCTAAAGGTTAGGGTTTACTTATTGGGTTGGGGGGTTAACAGTCGAGCATGCTTGCGCAT
CCTTAACAGTCGAGCACCTAAAGGTCCTTATGGTCGAGCACCTAAAGGTCCTTATGGTCGAGCAC
CTAAAGGTTAGGGTTTACTTATTGGGTTGGGGGGTTAACAGTCGAGCATGCTTGCGCATCCTTAA
CAGTCGAGCACCTAAAGGTTAGGGTTTACTTATTGGGTTGGGGGG
Right flanking sequence: Indices 335713 -- 336212
ACTAATTTGGCCATTTTAGCTTGGCGGAGGTTTTTCAAGATTTCCCTACTATTATAGCATTTTCA
GGAGGCGGAGGTTTTGTAATGACATATATAAAGAATGAACCAATCTCTCCTCTCCTTATCAGTCG
AGCCGATGGCGGCCTTATTAGTCGAGCGTGCTACGCACCCTGACGGACCTAATCAGATCAGTGAC
AATCTTTCTCACGGAATTACCTATCTCATCCTGACATGATGCCATTGAGAGAGATCGATTTGGTT
CATTTCGACCAGTGATTCCAGTCATGAATGAGATCTATTATATATGTCATTTATTACATGTCTCA
TAGAAGGTCTGATGAGGGTAGGCATGAGGAGATTGGAGGTCTAATGAGGAAAAGACTGCCTGCCT
ATTCAACTGGCTGGCTTTTGAACTGCTGCTTTATCCATTGCCTATGCCTTCGCTACCTATACTGA
TTCTTGTTCGGGTGGTGCTGCTTCCCCATGTGGATCTGAATCTAG
Found at i:337594 original size:34 final size:34
Alignment explanation
Indices: 337556--337659 Score: 116
Period size: 34 Copynumber: 3.3 Consensus size: 34
337546 TAGATAAGAC
337556 GGAGATAAGAAGATAAGAAGAAGAGAAGAATATG
1 GGAGATAAGAAGATAAGAAGAAGAGAAGAATATG
* * * *
337590 GGAGATAAGAGGAT--G--GTAGATAAG---A-C
1 GGAGATAAGAAGATAAGAAGAAGAGAAGAATATG
337616 GGAGATAAGAAGATAAGAAGAAGAGAAGAATATG
1 GGAGATAAGAAGATAAGAAGAAGAGAAGAATATG
337650 GGAGATAAGA
1 GGAGATAAGA
337660 GGATGGTAGA
Statistics
Matches: 54, Mismatches: 8, Indels: 16
0.69 0.10 0.21
Matches are distributed among these distances:
26 13 0.24
27 1 0.02
28 1 0.02
30 14 0.26
32 1 0.02
33 1 0.02
34 23 0.43
ACGTcount: A:0.52, C:0.01, G:0.35, T:0.12
Consensus pattern (34 bp):
GGAGATAAGAAGATAAGAAGAAGAGAAGAATATG
Left flanking sequence: Indices 337056 -- 337555
TGGATATGGATTCTAAACCGCTGATGCTGGTGCTTCTTGCTTTGTTGCTACTGACTCGGATGCCT
TTACACCTGCCTTTACCTCTGTCTGTCGGTGAAACCCCGGGGAGAAGACACCGAGTTCGGGGAGA
AAGACAGGGGTTTAAGCCGTAGCTCCATACAACCCCAGTTCCAGTTACAGATCGAGAGCTTATTT
CGGACTATAATAAGTAAACGCAGTTCGAGTTGATTCAGTTCATCCAGTTGATCCAGCAGCAGAAG
CACAACCTTATTATACTTATTGCATCAACTTCTTATGCTGGATCTACTTGGGGCCTCAACCTCTG
TACGATAGTTGAGGGGCTGGTCATCATCCCGACCTCGTGCTGCTATTGGGGCTGGTTATAATCCA
TACCTCCAAGCAATAGTTCGAGTGATCATCTGTCCAAGCAAGTGACCTAACCCAAGCAATAGAAT
TGGTCTAACCCTCCAGCACTCAGATAAGAGGATGGTAGATAAGAC
Right flanking sequence: Indices 337660 -- 338159
GGATGGTAGATAAGAAGGAGTTAAGAGGATAGCAGATAAAAGGATGGATAGATTCTTATCGCTTC
GTATCGGATCAGAAAGTAACAAGGGAGATCTCAATCTTCTGATTCTTATCCCTGTTCGATCATAT
TTGTAAGATAAGGAACAAAAACAAGGCGTATTATAAGAGTCCCCGTCCCTTTGTTCTCTTGTTCG
ATCATATTTTGAAAGCATAATGACATATATAAAGAATATGCATGATGAGCAAAGCGAGCCCCCCC
GAAACGGTATTGCCCATCGACCAGAAAGACCAGCCCAGTCCTTCCCTTCCTTCCTTCATAAGTTC
GACCACTCATTCCCTAACATATTAGTTGGCATTGAAATTAGGTCAAATGCAACCGCTTACGCACT
GGGCTTTCCTTCCTATCTACCAATACTACCCATCCCATACTTGGCTTAGATGAGCTGAGCCCTAC
CACTCACAAGCCAATGAGCCCTACCACGCTGATACCAATACTTGG
Found at i:337595 original size:26 final size:26
Alignment explanation
Indices: 337566--337659 Score: 71
Period size: 26 Copynumber: 3.3 Consensus size: 26
337556 GGAGATAAGA
337566 AGATAAGAAGAAGAGAAGAATATGGG
1 AGATAAGAAGAAGAGAAGAATATGGG
* * * * *
337592 AGATAAGAGGATGGTAGATAAGACGGAGATAAGA
1 AGATAAGA--A--GAAGAGAAGA---ATAT-GGG
337626 AGATAAGAAGAAGAGAAGAATATGGG
1 AGATAAGAAGAAGAGAAGAATATGGG
337652 AGATAAGA
1 AGATAAGA
337660 GGATGGTAGA
Statistics
Matches: 50, Mismatches: 10, Indels: 16
0.66 0.13 0.21
Matches are distributed among these distances:
26 17 0.34
27 3 0.06
28 1 0.02
30 16 0.32
32 1 0.02
33 3 0.06
34 9 0.18
ACGTcount: A:0.52, C:0.01, G:0.34, T:0.13
Consensus pattern (26 bp):
AGATAAGAAGAAGAGAAGAATATGGG
Left flanking sequence: Indices 337066 -- 337565
TTCTAAACCGCTGATGCTGGTGCTTCTTGCTTTGTTGCTACTGACTCGGATGCCTTTACACCTGC
CTTTACCTCTGTCTGTCGGTGAAACCCCGGGGAGAAGACACCGAGTTCGGGGAGAAAGACAGGGG
TTTAAGCCGTAGCTCCATACAACCCCAGTTCCAGTTACAGATCGAGAGCTTATTTCGGACTATAA
TAAGTAAACGCAGTTCGAGTTGATTCAGTTCATCCAGTTGATCCAGCAGCAGAAGCACAACCTTA
TTATACTTATTGCATCAACTTCTTATGCTGGATCTACTTGGGGCCTCAACCTCTGTACGATAGTT
GAGGGGCTGGTCATCATCCCGACCTCGTGCTGCTATTGGGGCTGGTTATAATCCATACCTCCAAG
CAATAGTTCGAGTGATCATCTGTCCAAGCAAGTGACCTAACCCAAGCAATAGAATTGGTCTAACC
CTCCAGCACTCAGATAAGAGGATGGTAGATAAGACGGAGATAAGA
Right flanking sequence: Indices 337660 -- 338159
GGATGGTAGATAAGAAGGAGTTAAGAGGATAGCAGATAAAAGGATGGATAGATTCTTATCGCTTC
GTATCGGATCAGAAAGTAACAAGGGAGATCTCAATCTTCTGATTCTTATCCCTGTTCGATCATAT
TTGTAAGATAAGGAACAAAAACAAGGCGTATTATAAGAGTCCCCGTCCCTTTGTTCTCTTGTTCG
ATCATATTTTGAAAGCATAATGACATATATAAAGAATATGCATGATGAGCAAAGCGAGCCCCCCC
GAAACGGTATTGCCCATCGACCAGAAAGACCAGCCCAGTCCTTCCCTTCCTTCCTTCATAAGTTC
GACCACTCATTCCCTAACATATTAGTTGGCATTGAAATTAGGTCAAATGCAACCGCTTACGCACT
GGGCTTTCCTTCCTATCTACCAATACTACCCATCCCATACTTGGCTTAGATGAGCTGAGCCCTAC
CACTCACAAGCCAATGAGCCCTACCACGCTGATACCAATACTTGG
Found at i:337625 original size:60 final size:60
Alignment explanation
Indices: 337532--337690 Score: 291
Period size: 60 Copynumber: 2.6 Consensus size: 60
337522 TCCAGCACTC
337532 AGATAAGAGGATGGTAGATAAGACGGAGATAAGAAGATAAGAAGAAGAGAAGAATATGGG
1 AGATAAGAGGATGGTAGATAAGACGGAGATAAGAAGATAAGAAGAAGAGAAGAATATGGG
337592 AGATAAGAGGATGGTAGATAAGACGGAGATAAGAAGATAAGAAGAAGAGAAGAATATGGG
1 AGATAAGAGGATGGTAGATAAGACGGAGATAAGAAGATAAGAAGAAGAGAAGAATATGGG
* * *
337652 AGATAAGAGGATGGTAGATAAGAAGGAGTTAAGAGGATA
1 AGATAAGAGGATGGTAGATAAGACGGAGATAAGAAGATA
337691 GCAGATAAAA
Statistics
Matches: 96, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
60 96 1.00
ACGTcount: A:0.49, C:0.01, G:0.35, T:0.14
Consensus pattern (60 bp):
AGATAAGAGGATGGTAGATAAGACGGAGATAAGAAGATAAGAAGAAGAGAAGAATATGGG
Left flanking sequence: Indices 337032 -- 337531
CGCTGGTGGCTAAGCAATTGCTACTGGATATGGATTCTAAACCGCTGATGCTGGTGCTTCTTGCT
TTGTTGCTACTGACTCGGATGCCTTTACACCTGCCTTTACCTCTGTCTGTCGGTGAAACCCCGGG
GAGAAGACACCGAGTTCGGGGAGAAAGACAGGGGTTTAAGCCGTAGCTCCATACAACCCCAGTTC
CAGTTACAGATCGAGAGCTTATTTCGGACTATAATAAGTAAACGCAGTTCGAGTTGATTCAGTTC
ATCCAGTTGATCCAGCAGCAGAAGCACAACCTTATTATACTTATTGCATCAACTTCTTATGCTGG
ATCTACTTGGGGCCTCAACCTCTGTACGATAGTTGAGGGGCTGGTCATCATCCCGACCTCGTGCT
GCTATTGGGGCTGGTTATAATCCATACCTCCAAGCAATAGTTCGAGTGATCATCTGTCCAAGCAA
GTGACCTAACCCAAGCAATAGAATTGGTCTAACCCTCCAGCACTC
Right flanking sequence: Indices 337691 -- 338190
GCAGATAAAAGGATGGATAGATTCTTATCGCTTCGTATCGGATCAGAAAGTAACAAGGGAGATCT
CAATCTTCTGATTCTTATCCCTGTTCGATCATATTTGTAAGATAAGGAACAAAAACAAGGCGTAT
TATAAGAGTCCCCGTCCCTTTGTTCTCTTGTTCGATCATATTTTGAAAGCATAATGACATATATA
AAGAATATGCATGATGAGCAAAGCGAGCCCCCCCGAAACGGTATTGCCCATCGACCAGAAAGACC
AGCCCAGTCCTTCCCTTCCTTCCTTCATAAGTTCGACCACTCATTCCCTAACATATTAGTTGGCA
TTGAAATTAGGTCAAATGCAACCGCTTACGCACTGGGCTTTCCTTCCTATCTACCAATACTACCC
ATCCCATACTTGGCTTAGATGAGCTGAGCCCTACCACTCACAAGCCAATGAGCCCTACCACGCTG
ATACCAATACTTGGCTAGAAGACCAAGGCAAGCCAAGAGTTCTAA
Found at i:337679 original size:26 final size:25
Alignment explanation
Indices: 337650--337703 Score: 72
Period size: 26 Copynumber: 2.1 Consensus size: 25
337640 GAAGAATATG
* *
337650 GGAGATAAGAGGATGGTAGATAAGAA
1 GGAGATAAGAGGATAGCAGATAA-AA
*
337676 GGAGTTAAGAGGATAGCAGATAAAA
1 GGAGATAAGAGGATAGCAGATAAAA
337701 GGA
1 GGA
337704 TGGATAGATT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
25 5 0.20
26 20 0.80
ACGTcount: A:0.46, C:0.02, G:0.37, T:0.15
Consensus pattern (25 bp):
GGAGATAAGAGGATAGCAGATAAAA
Left flanking sequence: Indices 337150 -- 337649
TGAAACCCCGGGGAGAAGACACCGAGTTCGGGGAGAAAGACAGGGGTTTAAGCCGTAGCTCCATA
CAACCCCAGTTCCAGTTACAGATCGAGAGCTTATTTCGGACTATAATAAGTAAACGCAGTTCGAG
TTGATTCAGTTCATCCAGTTGATCCAGCAGCAGAAGCACAACCTTATTATACTTATTGCATCAAC
TTCTTATGCTGGATCTACTTGGGGCCTCAACCTCTGTACGATAGTTGAGGGGCTGGTCATCATCC
CGACCTCGTGCTGCTATTGGGGCTGGTTATAATCCATACCTCCAAGCAATAGTTCGAGTGATCAT
CTGTCCAAGCAAGTGACCTAACCCAAGCAATAGAATTGGTCTAACCCTCCAGCACTCAGATAAGA
GGATGGTAGATAAGACGGAGATAAGAAGATAAGAAGAAGAGAAGAATATGGGAGATAAGAGGATG
GTAGATAAGACGGAGATAAGAAGATAAGAAGAAGAGAAGAATATG
Right flanking sequence: Indices 337704 -- 338203
TGGATAGATTCTTATCGCTTCGTATCGGATCAGAAAGTAACAAGGGAGATCTCAATCTTCTGATT
CTTATCCCTGTTCGATCATATTTGTAAGATAAGGAACAAAAACAAGGCGTATTATAAGAGTCCCC
GTCCCTTTGTTCTCTTGTTCGATCATATTTTGAAAGCATAATGACATATATAAAGAATATGCATG
ATGAGCAAAGCGAGCCCCCCCGAAACGGTATTGCCCATCGACCAGAAAGACCAGCCCAGTCCTTC
CCTTCCTTCCTTCATAAGTTCGACCACTCATTCCCTAACATATTAGTTGGCATTGAAATTAGGTC
AAATGCAACCGCTTACGCACTGGGCTTTCCTTCCTATCTACCAATACTACCCATCCCATACTTGG
CTTAGATGAGCTGAGCCCTACCACTCACAAGCCAATGAGCCCTACCACGCTGATACCAATACTTG
GCTAGAAGACCAAGGCAAGCCAAGAGTTCTAAAGAGGATTGGAAC
Found at i:339084 original size:27 final size:27
Alignment explanation
Indices: 339047--339105 Score: 118
Period size: 27 Copynumber: 2.2 Consensus size: 27
339037 TAGTGAGTGA
339047 CCCCTCTCCTCTCCTTATCAGTCGAGC
1 CCCCTCTCCTCTCCTTATCAGTCGAGC
339074 CCCCTCTCCTCTCCTTATCAGTCGAGC
1 CCCCTCTCCTCTCCTTATCAGTCGAGC
339101 CCCCT
1 CCCCT
339106 AAAGGGTCCT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.10, C:0.51, G:0.10, T:0.29
Consensus pattern (27 bp):
CCCCTCTCCTCTCCTTATCAGTCGAGC
Left flanking sequence: Indices 338547 -- 339046
ACCAGAGCTCCTAGTCCCATTTCCAGTCCCAGGTTCAGATGGAGATCATCCGGTTCCAGAAGGAG
TTACACCGGTGTATGAAGTTTTATATCCTCTTGCCCTATAGTCACTAGCTTTCCTTCGCCCAGTC
TTCGATTCCCTATCCCTCATTGCATTGTAGCAGGAAGAGACTAACTACCTTACACAGGGGCTACT
CCCTCCCTCTTTCACTGGTTCTTAAAATAGATAGGCGCCTAGGCTATGGCTTTCGAACTTCAACT
CAATATTGATCTGTGCCTGGAGAATCTGCTACGTGATCAACAGAATATGGCACCGGATCGAATGC
ATCTGGATGGATCTAGCTTCGGATTTTCGACTAAAGGATCTGCATATGAACCCCGGCGGGGTGCT
TCCTATGCCTTTGTCTCCGCTGGTGAAAACGATGGCGGCCCCCCTCTCAAATAAGTAACTAAAGG
CAGTCGAGTGTGCTAACGCACCCTCACCATATGAATAGTGAGTGA
Right flanking sequence: Indices 339106 -- 339605
AAAGGGTCCTTATTAGTCGAGCGTGCTTACGCACCCTAAAGGGTCCTTGACAGTCGAGCCCCTAC
CGGTCCTCACCATATGAATAGTGAGTGGCTCCGCCCCTAAGAAGTAAGGGCCCTTTACTCTGTCT
CTCGATCTGGCTAAGAGACTGACTATGCCGTTGAACCCAGTGCTTTTTCCGCCCCGGCTGCTCGC
TTTGCTATTGCTGCTACTTTTTGGTCAACGATGTCAATTACTTCTGGGTCTAAAAATGAAAGAGG
CTCCGCCCCAGCCTCTGCTACTGGATATGCTCTTGCCTTTGGTGGTTATTATAGGTCCACTTGGT
AAACTCCTTTGCCCGCATCCTGGTGATTGCTTACTTTGGTGCCTCCCCCGTGGCTGCTTGTTTTC
TTTGCACCTAGCTTTTACGCAATAACTACTGGGGTTTAAGCGGCTGCTGGGAGTGCCGGATCGGG
AACAAATGCAATGGTTTCTGAAATTGGTAAATAAACTGCTTCTGC
Found at i:339115 original size:27 final size:27
Alignment explanation
Indices: 339057--339127 Score: 79
Period size: 27 Copynumber: 2.6 Consensus size: 27
339047 CCCCTCTCCT
*** *
339057 CTCCTTATCAGTCGAGCCCCCTCTCCT
1 CTCCTTATCAGTCGAGCCCCCTAAACG
*
339084 CTCCTTATCAGTCGAGCCCCCTAAAGG
1 CTCCTTATCAGTCGAGCCCCCTAAACG
* *
339111 GTCCTTATTAGTCGAGC
1 CTCCTTATCAGTCGAGC
339128 GTGCTTACGC
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 37 1.00
ACGTcount: A:0.17, C:0.38, G:0.17, T:0.28
Consensus pattern (27 bp):
CTCCTTATCAGTCGAGCCCCCTAAACG
Left flanking sequence: Indices 338557 -- 339056
CTAGTCCCATTTCCAGTCCCAGGTTCAGATGGAGATCATCCGGTTCCAGAAGGAGTTACACCGGT
GTATGAAGTTTTATATCCTCTTGCCCTATAGTCACTAGCTTTCCTTCGCCCAGTCTTCGATTCCC
TATCCCTCATTGCATTGTAGCAGGAAGAGACTAACTACCTTACACAGGGGCTACTCCCTCCCTCT
TTCACTGGTTCTTAAAATAGATAGGCGCCTAGGCTATGGCTTTCGAACTTCAACTCAATATTGAT
CTGTGCCTGGAGAATCTGCTACGTGATCAACAGAATATGGCACCGGATCGAATGCATCTGGATGG
ATCTAGCTTCGGATTTTCGACTAAAGGATCTGCATATGAACCCCGGCGGGGTGCTTCCTATGCCT
TTGTCTCCGCTGGTGAAAACGATGGCGGCCCCCCTCTCAAATAAGTAACTAAAGGCAGTCGAGTG
TGCTAACGCACCCTCACCATATGAATAGTGAGTGACCCCTCTCCT
Right flanking sequence: Indices 339128 -- 339627
GTGCTTACGCACCCTAAAGGGTCCTTGACAGTCGAGCCCCTACCGGTCCTCACCATATGAATAGT
GAGTGGCTCCGCCCCTAAGAAGTAAGGGCCCTTTACTCTGTCTCTCGATCTGGCTAAGAGACTGA
CTATGCCGTTGAACCCAGTGCTTTTTCCGCCCCGGCTGCTCGCTTTGCTATTGCTGCTACTTTTT
GGTCAACGATGTCAATTACTTCTGGGTCTAAAAATGAAAGAGGCTCCGCCCCAGCCTCTGCTACT
GGATATGCTCTTGCCTTTGGTGGTTATTATAGGTCCACTTGGTAAACTCCTTTGCCCGCATCCTG
GTGATTGCTTACTTTGGTGCCTCCCCCGTGGCTGCTTGTTTTCTTTGCACCTAGCTTTTACGCAA
TAACTACTGGGGTTTAAGCGGCTGCTGGGAGTGCCGGATCGGGAACAAATGCAATGGTTTCTGAA
ATTGGTAAATAAACTGCTTCTGCCTTAGCTGCTAGCTTTGCAATT
Found at i:344973 original size:27 final size:27
Alignment explanation
Indices: 344936--344994 Score: 118
Period size: 27 Copynumber: 2.2 Consensus size: 27
344926 TAGTGAGTGA
344936 CCCCTCTCCTCTCCTTATCAGTCGAGC
1 CCCCTCTCCTCTCCTTATCAGTCGAGC
344963 CCCCTCTCCTCTCCTTATCAGTCGAGC
1 CCCCTCTCCTCTCCTTATCAGTCGAGC
344990 CCCCT
1 CCCCT
344995 AAAGGGTCCT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.10, C:0.51, G:0.10, T:0.29
Consensus pattern (27 bp):
CCCCTCTCCTCTCCTTATCAGTCGAGC
Left flanking sequence: Indices 344436 -- 344935
TAGCTCTTAGCCTTCCTTCTGCGCTCTTTCTTTCTGCGCACACTGATAAGTTGGTTCAGTTGGTT
CAGTGGTTTCATTCCCGTACCGTAAGGTTGAATAGGAACATAGTTCCGTTTCGTGTTGGTTGAAC
CATTGGCTCTTTACCCCACCCCCGGAGGTACTCATGGCAAGGTGACAAAATCAATCCATCTTCCT
TCGTCCAGAAGTTTCCACCCGGAATGTCTGACTCACTATTGGCCTAACCACCTCACCTGATGATA
GTGTGCCCTCTACCCTATGTGCGGTAGTGGAACCTCATCAGAGCGTAGTATTGCTCCAGCGGTTG
TGTGTGGAACCTCTTCATAGAGTGCAGTTGTAGTATCGCTCCATGCGGTTTTGGAACCTTATCAG
CAGAGTAGTAGGTCCCAATCAACCTTAATGGAAAAGTTCAATTTACTTATTGCCCCACCCAATAA
GTAAACCCCAACAGTCGAGCCCCTCACCATCGGAATAGTGAGTGA
Right flanking sequence: Indices 344995 -- 345494
AAAGGGTCCTTATTAGTCGAGCGTGCTTACGCACCCTAAAGGGTCCTTGACAGTCGAGCCGATGG
CGGCCTTAACAGTCGAGCATGCTTACGCATCCTGCCGGTCCTCACCATATGAATAGTGAGTGGCT
CCGCCCCTAAGTAAGAAATATAGGGTGAGGTAACGAACGCTCGACCCCCGGGAGAGGGCCCTCTC
CTTTCACAGTCGAGCCTATGAATAGTGAGTGGCTCCGCCCCTATGAAGAAGTAAGGGCCCAGAAG
ATCGCCTCCTCGGGGAGGAGGTCTACGATCTTGTCTTACTATTTGTTGGGGGTGGGACCGCTTAT
GCAAGAGAATATTCCGCGAGGCTTTCGGAGGGCACTTCGCAAATATAACTGAGAGAGATTCCGAT
ATATATTATATATGTCATTTCGGTTTCTGAATGAGAGAGAAGGAGAGCAGATCATGCATATCTTA
TATATGTCATTATGCATTCATTCATTATATATGTCATTTCAATTC
Found at i:345004 original size:27 final size:27
Alignment explanation
Indices: 344946--345016 Score: 79
Period size: 27 Copynumber: 2.6 Consensus size: 27
344936 CCCCTCTCCT
*** *
344946 CTCCTTATCAGTCGAGCCCCCTCTCCT
1 CTCCTTATCAGTCGAGCCCCCTAAACG
*
344973 CTCCTTATCAGTCGAGCCCCCTAAAGG
1 CTCCTTATCAGTCGAGCCCCCTAAACG
* *
345000 GTCCTTATTAGTCGAGC
1 CTCCTTATCAGTCGAGC
345017 GTGCTTACGC
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 37 1.00
ACGTcount: A:0.17, C:0.38, G:0.17, T:0.28
Consensus pattern (27 bp):
CTCCTTATCAGTCGAGCCCCCTAAACG
Left flanking sequence: Indices 344446 -- 344945
CCTTCCTTCTGCGCTCTTTCTTTCTGCGCACACTGATAAGTTGGTTCAGTTGGTTCAGTGGTTTC
ATTCCCGTACCGTAAGGTTGAATAGGAACATAGTTCCGTTTCGTGTTGGTTGAACCATTGGCTCT
TTACCCCACCCCCGGAGGTACTCATGGCAAGGTGACAAAATCAATCCATCTTCCTTCGTCCAGAA
GTTTCCACCCGGAATGTCTGACTCACTATTGGCCTAACCACCTCACCTGATGATAGTGTGCCCTC
TACCCTATGTGCGGTAGTGGAACCTCATCAGAGCGTAGTATTGCTCCAGCGGTTGTGTGTGGAAC
CTCTTCATAGAGTGCAGTTGTAGTATCGCTCCATGCGGTTTTGGAACCTTATCAGCAGAGTAGTA
GGTCCCAATCAACCTTAATGGAAAAGTTCAATTTACTTATTGCCCCACCCAATAAGTAAACCCCA
ACAGTCGAGCCCCTCACCATCGGAATAGTGAGTGACCCCTCTCCT
Right flanking sequence: Indices 345017 -- 345516
GTGCTTACGCACCCTAAAGGGTCCTTGACAGTCGAGCCGATGGCGGCCTTAACAGTCGAGCATGC
TTACGCATCCTGCCGGTCCTCACCATATGAATAGTGAGTGGCTCCGCCCCTAAGTAAGAAATATA
GGGTGAGGTAACGAACGCTCGACCCCCGGGAGAGGGCCCTCTCCTTTCACAGTCGAGCCTATGAA
TAGTGAGTGGCTCCGCCCCTATGAAGAAGTAAGGGCCCAGAAGATCGCCTCCTCGGGGAGGAGGT
CTACGATCTTGTCTTACTATTTGTTGGGGGTGGGACCGCTTATGCAAGAGAATATTCCGCGAGGC
TTTCGGAGGGCACTTCGCAAATATAACTGAGAGAGATTCCGATATATATTATATATGTCATTTCG
GTTTCTGAATGAGAGAGAAGGAGAGCAGATCATGCATATCTTATATATGTCATTATGCATTCATT
CATTATATATGTCATTTCAATTCAATCAAGTTTCGGCAAAGCGCC
Found at i:347426 original size:89 final size:89
Alignment explanation
Indices: 347307--347509 Score: 320
Period size: 90 Copynumber: 2.3 Consensus size: 89
347297 GGGGCGGAGC
*
347307 CACTCACTATTTTCATATGGTGAGGTGTGCGTAAACACACTCGACTG-CTTTGGTTACTTA-TTG
1 CACTCACTA--TTCATATGGTGAGGGGTGCGTAAACACACTCGACTGCCTTTGGTTACTTATTTG
347370 AGAGGAGGGGAGGAGGGTGCGTTAGCA
64 AGAGGAGGGGA-GAGGGTGCGTTAGCA
* *
347397 CGCTCACTATTCATTATGGTGAGGGGTGCGTAAGCACACTCGACTGCCTTTGGTTACTTATTTGA
1 CACTCACTATTCA-TATGGTGAGGGGTGCGTAAACACACTCGACTGCCTTTGGTTACTTATTTGA
*
347462 GAGGAGGGGAGAGGGTGCGTTTGCA
65 GAGGAGGGGAGAGGGTGCGTTAGCA
347487 CACTCACTATTCATATGGTGAGG
1 CACTCACTATTCATATGGTGAGG
347510 ACGGTTAAGG
Statistics
Matches: 105, Mismatches: 5, Indels: 7
0.90 0.04 0.06
Matches are distributed among these distances:
88 4 0.04
89 40 0.38
90 47 0.45
91 14 0.13
ACGTcount: A:0.22, C:0.18, G:0.31, T:0.29
Consensus pattern (89 bp):
CACTCACTATTCATATGGTGAGGGGTGCGTAAACACACTCGACTGCCTTTGGTTACTTATTTGAG
AGGAGGGGAGAGGGTGCGTTAGCA
Left flanking sequence: Indices 346807 -- 347306
TACATATCTCTATCCATGGAATATATCTCTTCGTATCGATATGTGCATATATCTATTTCGATATA
CCCATGTCTATATATACCTATCCATCTGTCTCTCTCTGTATATATCTAGATTTCTATCAATCAAT
CTAGATACGGGGATGGATATAGAGATGTCTATATAATGATGAATCATGTGAATATTCCTCTCCCG
TTGGTCGAGGGGAAGGAACTGACTGAACCTAAACTACCACATGCTCATATATAACTACCATAACA
AGGACCGGAGGGGCTCGACCATAAGCCCCCCCCACCCAATAAGTAAACCCTAATGCGGAGGCAGG
CTCGACTGTTAGGGTTTACTTATTGCCCCACCCAATAAGTAAACCCTAACCGGCAGGGTGCGTAA
GCACGCTCGACTAATAAGGCCGCCATCGGCTCGACTGTGAAAGGGAGGGCCCTCTCCCGGGGGTC
GAGCGTTCGTTACCTCACCCTATATTTCTTACTTAGGGGCGGAGC
Right flanking sequence: Indices 347510 -- 348009
ACGGTTAAGGGGCTTCGACCTGTTCAAGGACCCTTAGGGGTGCGTTTAAAGCACGCTCGACTAAA
TAAGGACCCTTAGGGGCTCGATGATAAGGAAGAGGAGAGGGGGCTCGACGATAAGGAGAGGAGAG
GGGTCCACTCACTATTCCGATGGTGAGGGTGCGTTAGCACACTTCGACTGTAAGGAGGGGCCCGG
GTAGGGCTCACCATTCCCGATGGTGAGGACCGGTAGGGGGCTCGACTGTTAAGGACCTTTAGGCT
GGCTCGACCCTAAGGATGCGTAAGCAGGCTCGACTGATTTAACCCCCAAAACCCAATAAGTAAAC
CCTAACCTTTAGTGCTCGACTGTTAAGAGAGAGGAGAGGAGAGGCCCGGTAGGGGCTCACCATTT
CCGATGGTGCAGGATTTGGAAGCTTCTATTTTCCCAAAATAGAGGGACAATAGTACGATAAATCA
GAAACAGAAAGAGTATGTCCAGAATGCATGCAATAAAAAATGCCG
Found at i:347621 original size:27 final size:26
Alignment explanation
Indices: 347587--347642 Score: 94
Period size: 27 Copynumber: 2.1 Consensus size: 26
347577 AGGACCCTTA
*
347587 GGGGCTCGATGATAAGGAAGAGGAGAG
1 GGGGCTCGACGATAAGG-AGAGGAGAG
347614 GGGGCTCGACGATAAGGAGAGGAGAG
1 GGGGCTCGACGATAAGGAGAGGAGAG
347640 GGG
1 GGG
347643 TCCACTCACT
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
26 12 0.43
27 16 0.57
ACGTcount: A:0.30, C:0.09, G:0.52, T:0.09
Consensus pattern (26 bp):
GGGGCTCGACGATAAGGAGAGGAGAG
Left flanking sequence: Indices 347087 -- 347586
ATAAGCCCCCCCCACCCAATAAGTAAACCCTAATGCGGAGGCAGGCTCGACTGTTAGGGTTTACT
TATTGCCCCACCCAATAAGTAAACCCTAACCGGCAGGGTGCGTAAGCACGCTCGACTAATAAGGC
CGCCATCGGCTCGACTGTGAAAGGGAGGGCCCTCTCCCGGGGGTCGAGCGTTCGTTACCTCACCC
TATATTTCTTACTTAGGGGCGGAGCCACTCACTATTTTCATATGGTGAGGTGTGCGTAAACACAC
TCGACTGCTTTGGTTACTTATTGAGAGGAGGGGAGGAGGGTGCGTTAGCACGCTCACTATTCATT
ATGGTGAGGGGTGCGTAAGCACACTCGACTGCCTTTGGTTACTTATTTGAGAGGAGGGGAGAGGG
TGCGTTTGCACACTCACTATTCATATGGTGAGGACGGTTAAGGGGCTTCGACCTGTTCAAGGACC
CTTAGGGGTGCGTTTAAAGCACGCTCGACTAAATAAGGACCCTTA
Right flanking sequence: Indices 347643 -- 348142
TCCACTCACTATTCCGATGGTGAGGGTGCGTTAGCACACTTCGACTGTAAGGAGGGGCCCGGGTA
GGGCTCACCATTCCCGATGGTGAGGACCGGTAGGGGGCTCGACTGTTAAGGACCTTTAGGCTGGC
TCGACCCTAAGGATGCGTAAGCAGGCTCGACTGATTTAACCCCCAAAACCCAATAAGTAAACCCT
AACCTTTAGTGCTCGACTGTTAAGAGAGAGGAGAGGAGAGGCCCGGTAGGGGCTCACCATTTCCG
ATGGTGCAGGATTTGGAAGCTTCTATTTTCCCAAAATAGAGGGACAATAGTACGATAAATCAGAA
ACAGAAAGAGTATGTCCAGAATGCATGCAATAAAAAATGCCGACCATACTTTTTTGGCATCACTT
CCCGAAAGTGGAAGACGATAATCTAATCTACCTGTACCGCTGGCGGATCCGTGAGCAGAACGAGA
ACCCCAAGAATAGAGAAAGGGGGTGGGGGACGGGGAACGCAAGTT
Found at i:349496 original size:75 final size:75
Alignment explanation
Indices: 349373--349526 Score: 281
Period size: 75 Copynumber: 2.1 Consensus size: 75
349363 TCTCCCTCTC
*
349373 CCTTAAGGTCGAGCACCTAAAGGTTAGGGTTTACTTATTGGGTTGGGGGGTTATCAGTCGAGCCT
1 CCTTAAGGTCGAGCACCTAAAGGTTAGGGTTTACTTATTGGGTTGGGGGGTTAACAGTCGAGCCT
349438 GCTTACGCAT
66 GCTTACGCAT
*
349448 CCTTAGGGTCGAGCACCTAAAGGTTAGGGTTTACTTATTGGGTTGGGGGGTTAACAGTCGAGCCT
1 CCTTAAGGTCGAGCACCTAAAGGTTAGGGTTTACTTATTGGGTTGGGGGGTTAACAGTCGAGCCT
*
349513 GCTTGCGCAT
66 GCTTACGCAT
349523 CCTT
1 CCTT
349527 GACAGTCGAG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
75 76 1.00
ACGTcount: A:0.19, C:0.19, G:0.31, T:0.31
Consensus pattern (75 bp):
CCTTAAGGTCGAGCACCTAAAGGTTAGGGTTTACTTATTGGGTTGGGGGGTTAACAGTCGAGCCT
GCTTACGCAT
Left flanking sequence: Indices 348873 -- 349372
TCAGATTCGAAATGATTACTGCTTGCAGCATGGGAGCTGATTACCCAACAACTCTCTGGGAACAA
TGGAAAAAAGGATATCCCGATAACGGAAACCATAGGGGCTGTATCGGCGAGATCCAACGGTGAAC
AACTAGATTCCCCAGAAGAAAACCCCGGCTGGAAGTCTGAGGACCTTTAGTACCCCCGAAAACAC
CTCCCCAGCAGCCAGCGCTTCGCGCCAAGCAAGACCGCGTCCCTTCATCCATTCAATAGGGCCTT
TTCATTCCAATTCATTCCAATACGTATGGGGCCAAGCGAAAGTGGAGAGGGGTAGGTGCTTGTGG
GGGAGGCTGCCCCTCGGCTCGGGAGGGAAGGGAAAGGTATAACCTCGAATATGATCAATTCCTCT
CCTTATCAGTCGAGCCCTGCCGGGGGCATCCTCTCCCGCTGGTCGAGCGATGGCGGCCTTATTAG
TCGAGCGTTCGTACCTCACCCTGCCGGCCCTCTCCTCTCCCTCTC
Right flanking sequence: Indices 349527 -- 350026
GACAGTCGAGTGTACTAACGCACCCTCACCATCGGAATAGTGAGTGACCCCTAAATAATATAGGG
CCCTTGATGCTTATTGGGTGGGGGGCGGTGGTCGAGCGTGCTCCGCATCCTCTCCTTATCAGTCG
AGCCTGCTTACGCATCCTCTCCCGTTGGTCGAGTCATGCCTTCCTTGATGCTTATTGGGTGGGGG
GCGTTGGTCGAGCCTGCTTGCGCATCCTTTCCTTCCTTGCCCCCCGGAGGGACAAGCGGCTTCGC
ACCTTATTGATTTTCCATTTCAGAAGAAAGGAGGTGGCCTGCGGTGTTATCTGAAGGGCGAAGGG
AAAACGCTCCCCGAGGGAGGGATTACGAGGATATATCCCCGTTCTTTACCCACCCCCCCCGCTGC
ACTGGATATCCTTATTTATCCAGGGCTGGCTGAAGACCCTGAAGGCCTTCGGCCTCCCTCCGCTC
TGCGAAGTGCTGAAGCTTTCTCTTTATATTATAAGGTGCGAAGCC
Found at i:351672 original size:20 final size:20
Alignment explanation
Indices: 351641--351692 Score: 95
Period size: 20 Copynumber: 2.5 Consensus size: 20
351631 CCTCTCCTCT
351641 CCTCTCCCTCTCGATGGCGGC
1 CCTCT-CCTCTCGATGGCGGC
351662 CCTCTCCTCTCGATGGCGGC
1 CCTCTCCTCTCGATGGCGGC
351682 CCTCTCCTCTC
1 CCTCTCCTCTC
351693 CTTATCAGTC
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
20 26 0.84
21 5 0.16
ACGTcount: A:0.04, C:0.50, G:0.19, T:0.27
Consensus pattern (20 bp):
CCTCTCCTCTCGATGGCGGC
Left flanking sequence: Indices 351141 -- 351640
TAGCTTACCAAATAAGTTGCGACACGGATGGGAACGCATGCTACGAAAGGTCCTTAAAGGTCTTA
CCTTTACCTGAGCGCGCTCTATATTCTTGATTCTATCTCTAGTTACCGAATACGAGCTTCTAGGG
TGGCCTGCCTTACAAAGCCTTCGTCAATTCAGAGTCTATTTCAATACTTACCAAACAGAGACTAT
TGAAAGATTTCTCTTACTGTGTCCTCTCCTTTCATATTCTTATCCTTATCGCGCGAACTAAGGCA
GTCGTTAGATGAGTTAGCGAGGTTACCCCTAAGACAGATATCTCTTTCTATTCCACCACTACTTT
AGCCCATAAAGAAAAGTCGTTCGGTGTATACTTCGTTACATAAGTCATAGCAAAGCCCTTACACA
CGTTATAGGCGGACCTATTTGATACGGTAAGGCCATTCGTAAGGTTCAATTTACTTATTGGGTGG
GGGGGCTAGATTGAGAGCCTGCTTGCGCATCCTCTCCTCTCCTCT
Right flanking sequence: Indices 351693 -- 352192
CTTATCAGTCGAGCCCCCTCTCCTCTCCTTATCAGTCGAGCCCCCTAAAGGGTCCTTATTAGTCG
AGCGTGCTTACGCACCCTAAAGGGTCCTTAACAGTCGAGCACCTAAAGGTCCTCTCCTCTTGGGT
TTACTTATTGCCCCACCCAATAAGTCAACCCTGGGTCGAGCACCTAAAGGTCCTTATCAGTCGAG
CCCCCTAAAGGGCCCTATATTCTTTAGGGGTCACTCACTATTCATATGGTGAGGGTCCTTATCAG
TCGAGCCTGCTTACGCATCCTCTCCCTCTCCCTTAAGGTCGAGCACCTAAAGGTCCTATGGTCGA
GCACCTAAAGGTCCTTATGGTCGAGCACCTAAAGGTTAGGGTTTACTTATTGCCCCACCCAATAA
GTAAACCCAACAGTCGAGCATGCTTGCGCATCCTCTCCTCTCCTTAACAGTCGAGCACCTAAAGG
TCCTTATCAGTCGAGCACCTAAAGGTTAGGGTTTACTTATTGGTT
Found at i:351719 original size:27 final size:27
Alignment explanation
Indices: 351681--351738 Score: 116
Period size: 27 Copynumber: 2.1 Consensus size: 27
351671 TCGATGGCGG
351681 CCCTCTCCTCTCCTTATCAGTCGAGCC
1 CCCTCTCCTCTCCTTATCAGTCGAGCC
351708 CCCTCTCCTCTCCTTATCAGTCGAGCC
1 CCCTCTCCTCTCCTTATCAGTCGAGCC
351735 CCCT
1 CCCT
351739 AAAGGGTCCT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.10, C:0.50, G:0.10, T:0.29
Consensus pattern (27 bp):
CCCTCTCCTCTCCTTATCAGTCGAGCC
Left flanking sequence: Indices 351181 -- 351680
CTACGAAAGGTCCTTAAAGGTCTTACCTTTACCTGAGCGCGCTCTATATTCTTGATTCTATCTCT
AGTTACCGAATACGAGCTTCTAGGGTGGCCTGCCTTACAAAGCCTTCGTCAATTCAGAGTCTATT
TCAATACTTACCAAACAGAGACTATTGAAAGATTTCTCTTACTGTGTCCTCTCCTTTCATATTCT
TATCCTTATCGCGCGAACTAAGGCAGTCGTTAGATGAGTTAGCGAGGTTACCCCTAAGACAGATA
TCTCTTTCTATTCCACCACTACTTTAGCCCATAAAGAAAAGTCGTTCGGTGTATACTTCGTTACA
TAAGTCATAGCAAAGCCCTTACACACGTTATAGGCGGACCTATTTGATACGGTAAGGCCATTCGT
AAGGTTCAATTTACTTATTGGGTGGGGGGGCTAGATTGAGAGCCTGCTTGCGCATCCTCTCCTCT
CCTCTCCTCTCCCTCTCGATGGCGGCCCTCTCCTCTCGATGGCGG
Right flanking sequence: Indices 351739 -- 352238
AAAGGGTCCTTATTAGTCGAGCGTGCTTACGCACCCTAAAGGGTCCTTAACAGTCGAGCACCTAA
AGGTCCTCTCCTCTTGGGTTTACTTATTGCCCCACCCAATAAGTCAACCCTGGGTCGAGCACCTA
AAGGTCCTTATCAGTCGAGCCCCCTAAAGGGCCCTATATTCTTTAGGGGTCACTCACTATTCATA
TGGTGAGGGTCCTTATCAGTCGAGCCTGCTTACGCATCCTCTCCCTCTCCCTTAAGGTCGAGCAC
CTAAAGGTCCTATGGTCGAGCACCTAAAGGTCCTTATGGTCGAGCACCTAAAGGTTAGGGTTTAC
TTATTGCCCCACCCAATAAGTAAACCCAACAGTCGAGCATGCTTGCGCATCCTCTCCTCTCCTTA
ACAGTCGAGCACCTAAAGGTCCTTATCAGTCGAGCACCTAAAGGTTAGGGTTTACTTATTGGTTT
GGGGGGTTAACACTCGAGCATGCTTGCGCATCCTTAACAGTCGAG
Found at i:351748 original size:27 final size:27
Alignment explanation
Indices: 351690--351760 Score: 79
Period size: 27 Copynumber: 2.6 Consensus size: 27
351680 GCCCTCTCCT
*** *
351690 CTCCTTATCAGTCGAGCCCCCTCTCCT
1 CTCCTTATCAGTCGAGCCCCCTAAACG
*
351717 CTCCTTATCAGTCGAGCCCCCTAAAGG
1 CTCCTTATCAGTCGAGCCCCCTAAACG
* *
351744 GTCCTTATTAGTCGAGC
1 CTCCTTATCAGTCGAGC
351761 GTGCTTACGC
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 37 1.00
ACGTcount: A:0.17, C:0.38, G:0.17, T:0.28
Consensus pattern (27 bp):
CTCCTTATCAGTCGAGCCCCCTAAACG
Left flanking sequence: Indices 351190 -- 351689
GTCCTTAAAGGTCTTACCTTTACCTGAGCGCGCTCTATATTCTTGATTCTATCTCTAGTTACCGA
ATACGAGCTTCTAGGGTGGCCTGCCTTACAAAGCCTTCGTCAATTCAGAGTCTATTTCAATACTT
ACCAAACAGAGACTATTGAAAGATTTCTCTTACTGTGTCCTCTCCTTTCATATTCTTATCCTTAT
CGCGCGAACTAAGGCAGTCGTTAGATGAGTTAGCGAGGTTACCCCTAAGACAGATATCTCTTTCT
ATTCCACCACTACTTTAGCCCATAAAGAAAAGTCGTTCGGTGTATACTTCGTTACATAAGTCATA
GCAAAGCCCTTACACACGTTATAGGCGGACCTATTTGATACGGTAAGGCCATTCGTAAGGTTCAA
TTTACTTATTGGGTGGGGGGGCTAGATTGAGAGCCTGCTTGCGCATCCTCTCCTCTCCTCTCCTC
TCCCTCTCGATGGCGGCCCTCTCCTCTCGATGGCGGCCCTCTCCT
Right flanking sequence: Indices 351761 -- 352260
GTGCTTACGCACCCTAAAGGGTCCTTAACAGTCGAGCACCTAAAGGTCCTCTCCTCTTGGGTTTA
CTTATTGCCCCACCCAATAAGTCAACCCTGGGTCGAGCACCTAAAGGTCCTTATCAGTCGAGCCC
CCTAAAGGGCCCTATATTCTTTAGGGGTCACTCACTATTCATATGGTGAGGGTCCTTATCAGTCG
AGCCTGCTTACGCATCCTCTCCCTCTCCCTTAAGGTCGAGCACCTAAAGGTCCTATGGTCGAGCA
CCTAAAGGTCCTTATGGTCGAGCACCTAAAGGTTAGGGTTTACTTATTGCCCCACCCAATAAGTA
AACCCAACAGTCGAGCATGCTTGCGCATCCTCTCCTCTCCTTAACAGTCGAGCACCTAAAGGTCC
TTATCAGTCGAGCACCTAAAGGTTAGGGTTTACTTATTGGTTTGGGGGGTTAACACTCGAGCATG
CTTGCGCATCCTTAACAGTCGAGCACCTAAAGGTCCTTATCAGTC
Found at i:352041 original size:24 final size:24
Alignment explanation
Indices: 351983--352053 Score: 126
Period size: 24 Copynumber: 3.0 Consensus size: 24
351973 TCTCCCTCTC
*
351983 CCTTAAGGTCGAGCACCTAAAGGT
1 CCTTATGGTCGAGCACCTAAAGGT
352007 CC-TATGGTCGAGCACCTAAAGGT
1 CCTTATGGTCGAGCACCTAAAGGT
352030 CCTTATGGTCGAGCACCTAAAGGT
1 CCTTATGGTCGAGCACCTAAAGGT
352054 TAGGGTTTAC
Statistics
Matches: 45, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
23 22 0.49
24 23 0.51
ACGTcount: A:0.27, C:0.25, G:0.25, T:0.23
Consensus pattern (24 bp):
CCTTATGGTCGAGCACCTAAAGGT
Left flanking sequence: Indices 351483 -- 351982
CGTTCGGTGTATACTTCGTTACATAAGTCATAGCAAAGCCCTTACACACGTTATAGGCGGACCTA
TTTGATACGGTAAGGCCATTCGTAAGGTTCAATTTACTTATTGGGTGGGGGGGCTAGATTGAGAG
CCTGCTTGCGCATCCTCTCCTCTCCTCTCCTCTCCCTCTCGATGGCGGCCCTCTCCTCTCGATGG
CGGCCCTCTCCTCTCCTTATCAGTCGAGCCCCCTCTCCTCTCCTTATCAGTCGAGCCCCCTAAAG
GGTCCTTATTAGTCGAGCGTGCTTACGCACCCTAAAGGGTCCTTAACAGTCGAGCACCTAAAGGT
CCTCTCCTCTTGGGTTTACTTATTGCCCCACCCAATAAGTCAACCCTGGGTCGAGCACCTAAAGG
TCCTTATCAGTCGAGCCCCCTAAAGGGCCCTATATTCTTTAGGGGTCACTCACTATTCATATGGT
GAGGGTCCTTATCAGTCGAGCCTGCTTACGCATCCTCTCCCTCTC
Right flanking sequence: Indices 352054 -- 352553
TAGGGTTTACTTATTGCCCCACCCAATAAGTAAACCCAACAGTCGAGCATGCTTGCGCATCCTCT
CCTCTCCTTAACAGTCGAGCACCTAAAGGTCCTTATCAGTCGAGCACCTAAAGGTTAGGGTTTAC
TTATTGGTTTGGGGGGTTAACACTCGAGCATGCTTGCGCATCCTTAACAGTCGAGCACCTAAAGG
TCCTTATCAGTCGAGCAACTAAAGTTCCTCTCCTCTCCTTATCAGTCGAGCCCCCTAAAGGGTCC
TTATCAGTCGAGCCCCGTTGCCGGTTAGGGTTTACTTATTGGGTGGGGGGGCTAACGGTCGAGCA
ACTAAAGTTCCTCTCCTCTCCTTATCAGTCGAGCCCCCTAAAGGGTCCTTATCAGTCGAGCCCCG
TTGCCGGTTAGGGTTTACTTATTGGGTGGGGGGGCTAACGGTCGAGCAACTAAAGTTGAAATTGA
CTTATTGGTGGGGGGGGTTAGATTGAGAGCCCCGTTGCCGGTGAA
Found at i:352158 original size:25 final size:25
Alignment explanation
Indices: 352123--352173 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
352113 TCCTCTCCTC
352123 TCCTTAACAGTCGAGCACCTAAAGG
1 TCCTTAACAGTCGAGCACCTAAAGG
*
352148 TCCTTATCAGTCGAGCACCTAAAGG
1 TCCTTAACAGTCGAGCACCTAAAGG
352173 T
1 T
352174 TAGGGTTTAC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (25 bp):
TCCTTAACAGTCGAGCACCTAAAGG
Left flanking sequence: Indices 351623 -- 352122
CATCCTCTCCTCTCCTCTCCTCTCCCTCTCGATGGCGGCCCTCTCCTCTCGATGGCGGCCCTCTC
CTCTCCTTATCAGTCGAGCCCCCTCTCCTCTCCTTATCAGTCGAGCCCCCTAAAGGGTCCTTATT
AGTCGAGCGTGCTTACGCACCCTAAAGGGTCCTTAACAGTCGAGCACCTAAAGGTCCTCTCCTCT
TGGGTTTACTTATTGCCCCACCCAATAAGTCAACCCTGGGTCGAGCACCTAAAGGTCCTTATCAG
TCGAGCCCCCTAAAGGGCCCTATATTCTTTAGGGGTCACTCACTATTCATATGGTGAGGGTCCTT
ATCAGTCGAGCCTGCTTACGCATCCTCTCCCTCTCCCTTAAGGTCGAGCACCTAAAGGTCCTATG
GTCGAGCACCTAAAGGTCCTTATGGTCGAGCACCTAAAGGTTAGGGTTTACTTATTGCCCCACCC
AATAAGTAAACCCAACAGTCGAGCATGCTTGCGCATCCTCTCCTC
Right flanking sequence: Indices 352174 -- 352673
TAGGGTTTACTTATTGGTTTGGGGGGTTAACACTCGAGCATGCTTGCGCATCCTTAACAGTCGAG
CACCTAAAGGTCCTTATCAGTCGAGCAACTAAAGTTCCTCTCCTCTCCTTATCAGTCGAGCCCCC
TAAAGGGTCCTTATCAGTCGAGCCCCGTTGCCGGTTAGGGTTTACTTATTGGGTGGGGGGGCTAA
CGGTCGAGCAACTAAAGTTCCTCTCCTCTCCTTATCAGTCGAGCCCCCTAAAGGGTCCTTATCAG
TCGAGCCCCGTTGCCGGTTAGGGTTTACTTATTGGGTGGGGGGGCTAACGGTCGAGCAACTAAAG
TTGAAATTGACTTATTGGTGGGGGGGGTTAGATTGAGAGCCCCGTTGCCGGTGAATTGACTTATT
GGTGGGGGGGGTTAGATTGAGAGCCCCGTTGCCGGTTAGGGTTTACTTATTGCCCCACCCAATAA
GTAAACCCTAACAGTCGAGCCTGCTTAAGCATCCTGAAAGGACCT
Found at i:352259 original size:25 final size:25
Alignment explanation
Indices: 352224--352277 Score: 81
Period size: 25 Copynumber: 2.2 Consensus size: 25
352214 TGCTTGCGCA
*
352224 TCCTTAACAGTCGAGCACCTAAAGG
1 TCCTTAACAGTCGAGCAACTAAAGG
* *
352249 TCCTTATCAGTCGAGCAACTAAAGT
1 TCCTTAACAGTCGAGCAACTAAAGG
352274 TCCT
1 TCCT
352278 CTCCTCTCCT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.26
Consensus pattern (25 bp):
TCCTTAACAGTCGAGCAACTAAAGG
Left flanking sequence: Indices 351724 -- 352223
TCAGTCGAGCCCCCTAAAGGGTCCTTATTAGTCGAGCGTGCTTACGCACCCTAAAGGGTCCTTAA
CAGTCGAGCACCTAAAGGTCCTCTCCTCTTGGGTTTACTTATTGCCCCACCCAATAAGTCAACCC
TGGGTCGAGCACCTAAAGGTCCTTATCAGTCGAGCCCCCTAAAGGGCCCTATATTCTTTAGGGGT
CACTCACTATTCATATGGTGAGGGTCCTTATCAGTCGAGCCTGCTTACGCATCCTCTCCCTCTCC
CTTAAGGTCGAGCACCTAAAGGTCCTATGGTCGAGCACCTAAAGGTCCTTATGGTCGAGCACCTA
AAGGTTAGGGTTTACTTATTGCCCCACCCAATAAGTAAACCCAACAGTCGAGCATGCTTGCGCAT
CCTCTCCTCTCCTTAACAGTCGAGCACCTAAAGGTCCTTATCAGTCGAGCACCTAAAGGTTAGGG
TTTACTTATTGGTTTGGGGGGTTAACACTCGAGCATGCTTGCGCA
Right flanking sequence: Indices 352278 -- 352777
CTCCTCTCCTTATCAGTCGAGCCCCCTAAAGGGTCCTTATCAGTCGAGCCCCGTTGCCGGTTAGG
GTTTACTTATTGGGTGGGGGGGCTAACGGTCGAGCAACTAAAGTTCCTCTCCTCTCCTTATCAGT
CGAGCCCCCTAAAGGGTCCTTATCAGTCGAGCCCCGTTGCCGGTTAGGGTTTACTTATTGGGTGG
GGGGGCTAACGGTCGAGCAACTAAAGTTGAAATTGACTTATTGGTGGGGGGGGTTAGATTGAGAG
CCCCGTTGCCGGTGAATTGACTTATTGGTGGGGGGGGTTAGATTGAGAGCCCCGTTGCCGGTTAG
GGTTTACTTATTGCCCCACCCAATAAGTAAACCCTAACAGTCGAGCCTGCTTAAGCATCCTGAAA
GGACCTTATTTTTCGCTCTGCGAAGGTAAGGTCCTGAAAGGTAAACCCTGGGCTCTGCTCAGGCA
GGTAAGGTCCTGGTCTTACCTGAGCTAGCTCTGCGAAGGTAAGGG
Found at i:352456 original size:113 final size:113
Alignment explanation
Indices: 352258--352500 Score: 486
Period size: 113 Copynumber: 2.2 Consensus size: 113
352248 GTCCTTATCA
352258 GTCGAGCAACTAAAGTTCCTCTCCTCTCCTTATCAGTCGAGCCCCCTAAAGGGTCCTTATCAGTC
1 GTCGAGCAACTAAAGTTCCTCTCCTCTCCTTATCAGTCGAGCCCCCTAAAGGGTCCTTATCAGTC
352323 GAGCCCCGTTGCCGGTTAGGGTTTACTTATTGGGTGGGGGGGCTAACG
66 GAGCCCCGTTGCCGGTTAGGGTTTACTTATTGGGTGGGGGGGCTAACG
352371 GTCGAGCAACTAAAGTTCCTCTCCTCTCCTTATCAGTCGAGCCCCCTAAAGGGTCCTTATCAGTC
1 GTCGAGCAACTAAAGTTCCTCTCCTCTCCTTATCAGTCGAGCCCCCTAAAGGGTCCTTATCAGTC
352436 GAGCCCCGTTGCCGGTTAGGGTTTACTTATTGGGTGGGGGGGCTAACG
66 GAGCCCCGTTGCCGGTTAGGGTTTACTTATTGGGTGGGGGGGCTAACG
352484 GTCGAGCAACTAAAGTT
1 GTCGAGCAACTAAAGTT
352501 GAAATTGACT
Statistics
Matches: 130, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
113 130 1.00
ACGTcount: A:0.19, C:0.27, G:0.27, T:0.27
Consensus pattern (113 bp):
GTCGAGCAACTAAAGTTCCTCTCCTCTCCTTATCAGTCGAGCCCCCTAAAGGGTCCTTATCAGTC
GAGCCCCGTTGCCGGTTAGGGTTTACTTATTGGGTGGGGGGGCTAACG
Left flanking sequence: Indices 351758 -- 352257
AGCGTGCTTACGCACCCTAAAGGGTCCTTAACAGTCGAGCACCTAAAGGTCCTCTCCTCTTGGGT
TTACTTATTGCCCCACCCAATAAGTCAACCCTGGGTCGAGCACCTAAAGGTCCTTATCAGTCGAG
CCCCCTAAAGGGCCCTATATTCTTTAGGGGTCACTCACTATTCATATGGTGAGGGTCCTTATCAG
TCGAGCCTGCTTACGCATCCTCTCCCTCTCCCTTAAGGTCGAGCACCTAAAGGTCCTATGGTCGA
GCACCTAAAGGTCCTTATGGTCGAGCACCTAAAGGTTAGGGTTTACTTATTGCCCCACCCAATAA
GTAAACCCAACAGTCGAGCATGCTTGCGCATCCTCTCCTCTCCTTAACAGTCGAGCACCTAAAGG
TCCTTATCAGTCGAGCACCTAAAGGTTAGGGTTTACTTATTGGTTTGGGGGGTTAACACTCGAGC
ATGCTTGCGCATCCTTAACAGTCGAGCACCTAAAGGTCCTTATCA
Right flanking sequence: Indices 352501 -- 353000
GAAATTGACTTATTGGTGGGGGGGGTTAGATTGAGAGCCCCGTTGCCGGTGAATTGACTTATTGG
TGGGGGGGGTTAGATTGAGAGCCCCGTTGCCGGTTAGGGTTTACTTATTGCCCCACCCAATAAGT
AAACCCTAACAGTCGAGCCTGCTTAAGCATCCTGAAAGGACCTTATTTTTCGCTCTGCGAAGGTA
AGGTCCTGAAAGGTAAACCCTGGGCTCTGCTCAGGCAGGTAAGGTCCTGGTCTTACCTGAGCTAG
CTCTGCGAAGGTAAGGGTATCTGATGCATAAACCATCTACTCAAGATCCTTACCTTCGCAGAGCT
CAGACCTACCTTTCATATCTTCCCGAACTCTAACTCTTTGAGGGGAATAAAGAAAGGGCCAGGAC
CTTGTACGAGTCCGCAATCACTGCACGAGATGAACCTGGGTTTGGTGAATCAAAGTTGGCCCTAG
GTGTAATAAGACTCCCAGTTACAGCGCGCGATCGTATACCGAGGT
Found at i:352559 original size:49 final size:49
Alignment explanation
Indices: 352503--352599 Score: 194
Period size: 49 Copynumber: 2.0 Consensus size: 49
352493 CTAAAGTTGA
352503 AATTGACTTATTGGTGGGGGGGGTTAGATTGAGAGCCCCGTTGCCGGTG
1 AATTGACTTATTGGTGGGGGGGGTTAGATTGAGAGCCCCGTTGCCGGTG
352552 AATTGACTTATTGGTGGGGGGGGTTAGATTGAGAGCCCCGTTGCCGGT
1 AATTGACTTATTGGTGGGGGGGGTTAGATTGAGAGCCCCGTTGCCGGT
352600 TAGGGTTTAC
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 48 1.00
ACGTcount: A:0.16, C:0.14, G:0.40, T:0.29
Consensus pattern (49 bp):
AATTGACTTATTGGTGGGGGGGGTTAGATTGAGAGCCCCGTTGCCGGTG
Left flanking sequence: Indices 352003 -- 352502
AGGTCCTATGGTCGAGCACCTAAAGGTCCTTATGGTCGAGCACCTAAAGGTTAGGGTTTACTTAT
TGCCCCACCCAATAAGTAAACCCAACAGTCGAGCATGCTTGCGCATCCTCTCCTCTCCTTAACAG
TCGAGCACCTAAAGGTCCTTATCAGTCGAGCACCTAAAGGTTAGGGTTTACTTATTGGTTTGGGG
GGTTAACACTCGAGCATGCTTGCGCATCCTTAACAGTCGAGCACCTAAAGGTCCTTATCAGTCGA
GCAACTAAAGTTCCTCTCCTCTCCTTATCAGTCGAGCCCCCTAAAGGGTCCTTATCAGTCGAGCC
CCGTTGCCGGTTAGGGTTTACTTATTGGGTGGGGGGGCTAACGGTCGAGCAACTAAAGTTCCTCT
CCTCTCCTTATCAGTCGAGCCCCCTAAAGGGTCCTTATCAGTCGAGCCCCGTTGCCGGTTAGGGT
TTACTTATTGGGTGGGGGGGCTAACGGTCGAGCAACTAAAGTTGA
Right flanking sequence: Indices 352600 -- 353099
TAGGGTTTACTTATTGCCCCACCCAATAAGTAAACCCTAACAGTCGAGCCTGCTTAAGCATCCTG
AAAGGACCTTATTTTTCGCTCTGCGAAGGTAAGGTCCTGAAAGGTAAACCCTGGGCTCTGCTCAG
GCAGGTAAGGTCCTGGTCTTACCTGAGCTAGCTCTGCGAAGGTAAGGGTATCTGATGCATAAACC
ATCTACTCAAGATCCTTACCTTCGCAGAGCTCAGACCTACCTTTCATATCTTCCCGAACTCTAAC
TCTTTGAGGGGAATAAAGAAAGGGCCAGGACCTTGTACGAGTCCGCAATCACTGCACGAGATGAA
CCTGGGTTTGGTGAATCAAAGTTGGCCCTAGGTGTAATAAGACTCCCAGTTACAGCGCGCGATCG
TATACCGAGGTGCTCCCCGCCGGTTGCTTGCTGGGACGACGCGAGCCAGCCGGAACTCGAGGGTC
CCCGCCCGTGAGGGTACCCTCGAGTTCCTTGGATCAATTAAGAAA
Found at i:353854 original size:240 final size:240
Alignment explanation
Indices: 353431--353909 Score: 958
Period size: 240 Copynumber: 2.0 Consensus size: 240
353421 GTATTTCGAT
353431 TTCTATCTATAGATAGATAGATATGAATGGGAATCTATATTGATCCATCTATTGGGATATATCTT
1 TTCTATCTATAGATAGATAGATATGAATGGGAATCTATATTGATCCATCTATTGGGATATATCTT
353496 CTATTCAGATACATGGATCTCTTTCCATATATAGTCATACAATAACGTGTCATTCTGATCTGTTT
66 CTATTCAGATACATGGATCTCTTTCCATATATAGTCATACAATAACGTGTCATTCTGATCTGTTT
353561 ATGATCTAAATAACTGCGCTTAGCACCCCCGCTCATTGAACGGCTCTGCTGCAATGGATGGCAGA
131 ATGATCTAAATAACTGCGCTTAGCACCCCCGCTCATTGAACGGCTCTGCTGCAATGGATGGCAGA
353626 GGGTCCGTAGTACCCTACCCCGAAGGCCGGGGGAAGCACTGGAGC
196 GGGTCCGTAGTACCCTACCCCGAAGGCCGGGGGAAGCACTGGAGC
353671 TTCTATCTATAGATAGATAGATATGAATGGGAATCTATATTGATCCATCTATTGGGATATATCTT
1 TTCTATCTATAGATAGATAGATATGAATGGGAATCTATATTGATCCATCTATTGGGATATATCTT
353736 CTATTCAGATACATGGATCTCTTTCCATATATAGTCATACAATAACGTGTCATTCTGATCTGTTT
66 CTATTCAGATACATGGATCTCTTTCCATATATAGTCATACAATAACGTGTCATTCTGATCTGTTT
353801 ATGATCTAAATAACTGCGCTTAGCACCCCCGCTCATTGAACGGCTCTGCTGCAATGGATGGCAGA
131 ATGATCTAAATAACTGCGCTTAGCACCCCCGCTCATTGAACGGCTCTGCTGCAATGGATGGCAGA
353866 GGGTCCGTAGTACCCTACCCCGAAGGCCGGGGGAAGCACTGGAG
196 GGGTCCGTAGTACCCTACCCCGAAGGCCGGGGGAAGCACTGGAG
353910 TGATCCAGTA
Statistics
Matches: 239, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
240 239 1.00
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30
Consensus pattern (240 bp):
TTCTATCTATAGATAGATAGATATGAATGGGAATCTATATTGATCCATCTATTGGGATATATCTT
CTATTCAGATACATGGATCTCTTTCCATATATAGTCATACAATAACGTGTCATTCTGATCTGTTT
ATGATCTAAATAACTGCGCTTAGCACCCCCGCTCATTGAACGGCTCTGCTGCAATGGATGGCAGA
GGGTCCGTAGTACCCTACCCCGAAGGCCGGGGGAAGCACTGGAGC
Left flanking sequence: Indices 352931 -- 353430
TTTGGTGAATCAAAGTTGGCCCTAGGTGTAATAAGACTCCCAGTTACAGCGCGCGATCGTATACC
GAGGTGCTCCCCGCCGGTTGCTTGCTGGGACGACGCGAGCCAGCCGGAACTCGAGGGTCCCCGCC
CGTGAGGGTACCCTCGAGTTCCTTGGATCAATTAAGAAATATGGAGAAAGGGACAGAGGGAATTA
CCCATATTATCGGGGACGGGGAACGAATTGACATCTCGATGTGATACAGCCTTTTTCCATTTGGG
TTGGGAAATAACGGCGAAGTCCATCCGGGGAAAACCGTCCGATGAATAAGAGGATAAGCGCCAAT
GGCGCGCGAAGCGCATGCGGAACGGGCGCGGAGAAAAGAGAAAGTGCCGCCGTTGAGGCAGGCCC
CCAGAGCCCCCTCCCTGGCCGCGCTTTATGGACCCAAAGCAGTGTTTTCCGCCAAATGAATGAAG
GATTTGGGGCTTACTGCTATGTAGCATTACGATTCGTATTTCGAT
Right flanking sequence: Indices 353910 -- 354409
TGATCCAGTAGCCGGGAAGGGGCCTGATTGATAAGTGCCTACTGCTACACTTGGCTCTACACATT
GACAGAGCTAACCCCTGTCCATCGGATGTGTCCGGCAGGGTTCAGGGGGGCGGGCTGAAATCCTC
ACCATCGGAATGGTGAGCCCCTACCGGTCCTCTCCTCTCCCTCTCCTTAACAGTCGAGCACCTAA
AGGTCCTTAGGGTCGAGCACCTAAAGGTCCTTAACAGTCGAGCCCCTACCGGTCCTCACCATCGG
AATGGTGAGCCCCTACCGGTCCTCCTTCCTTGTGAGTGAATCTCTAGATGCATGGCTTTTTTAAC
GGACAAGGGGGGGCCAGAGCGAAGCCTCTGGAATACAAGATCCTTGGGATACTAATCAGTCGAGG
GCCTATCTAGATATGGACTCTATCCCGCCCCATATGGAAGGTGGGGGCCTCCCCCCATATGGAGT
AGGGATCTATGCCCTCGACCTATCGGCCCCGCGTGCATAACTTTT
Found at i:354160 original size:25 final size:25
Alignment explanation
Indices: 354083--354152 Score: 106
Period size: 24 Copynumber: 2.8 Consensus size: 25
354073 CCTCTCCCTC
354083 TCCTTAACAGTCGAGCACCTAAAGG
1 TCCTTAACAGTCGAGCACCTAAAGG
**
354108 TCCTT-AGGGTCGAGCACCTAAAGG
1 TCCTTAACAGTCGAGCACCTAAAGG
*
354132 TCCTTAACAGTCGAGCCCCTA
1 TCCTTAACAGTCGAGCACCTA
354153 CCGGTCCTCA
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
24 22 0.56
25 17 0.44
ACGTcount: A:0.27, C:0.30, G:0.21, T:0.21
Consensus pattern (25 bp):
TCCTTAACAGTCGAGCACCTAAAGG
Left flanking sequence: Indices 353583 -- 354082
GCACCCCCGCTCATTGAACGGCTCTGCTGCAATGGATGGCAGAGGGTCCGTAGTACCCTACCCCG
AAGGCCGGGGGAAGCACTGGAGCTTCTATCTATAGATAGATAGATATGAATGGGAATCTATATTG
ATCCATCTATTGGGATATATCTTCTATTCAGATACATGGATCTCTTTCCATATATAGTCATACAA
TAACGTGTCATTCTGATCTGTTTATGATCTAAATAACTGCGCTTAGCACCCCCGCTCATTGAACG
GCTCTGCTGCAATGGATGGCAGAGGGTCCGTAGTACCCTACCCCGAAGGCCGGGGGAAGCACTGG
AGTGATCCAGTAGCCGGGAAGGGGCCTGATTGATAAGTGCCTACTGCTACACTTGGCTCTACACA
TTGACAGAGCTAACCCCTGTCCATCGGATGTGTCCGGCAGGGTTCAGGGGGGCGGGCTGAAATCC
TCACCATCGGAATGGTGAGCCCCTACCGGTCCTCTCCTCTCCCTC
Right flanking sequence: Indices 354153 -- 354652
CCGGTCCTCACCATCGGAATGGTGAGCCCCTACCGGTCCTCCTTCCTTGTGAGTGAATCTCTAGA
TGCATGGCTTTTTTAACGGACAAGGGGGGGCCAGAGCGAAGCCTCTGGAATACAAGATCCTTGGG
ATACTAATCAGTCGAGGGCCTATCTAGATATGGACTCTATCCCGCCCCATATGGAAGGTGGGGGC
CTCCCCCCATATGGAGTAGGGATCTATGCCCTCGACCTATCGGCCCCGCGTGCATAACTTTTTCT
CGTGCTGGATCTCCGGGGGCAGGGTTCGAATTCGAACCTGCAGGGATGGTCATGGGCGACCCCCG
AGGTAGATATCTGGGCGGGCGCCATAGATAGTTCGTTCTGGGGTCTCCCCGGCCGAGTGCACCAT
ATATAGAGAAGCGGTTGGGACCAAATGAAATTGGCGACAAATGGGTGACAAATGGGGGAGCGTGA
CTGTAGCTACACAAATACATACAGGAGGTGGTTACTGCACAACTC
Found at i:355274 original size:23 final size:23
Alignment explanation
Indices: 355244--355289 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
355234 TGGGTAAGAC
*
355244 CCGAAGGAGAGAAAGGAGCCTGG
1 CCGAAGGAAAGAAAGGAGCCTGG
*
355267 CCGAAGGAAAGGAAGGAGCCTGG
1 CCGAAGGAAAGAAAGGAGCCTGG
355290 GTTTTTATCG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.35, C:0.17, G:0.43, T:0.04
Consensus pattern (23 bp):
CCGAAGGAAAGAAAGGAGCCTGG
Left flanking sequence: Indices 354744 -- 355243
CGTTCGGAGTTGCGTGCGATTATTTCGGAGAGAGGGTTGGCCCTATTCTCTAAACGGTATTGTCG
TTGGTATTCGATTCGCCATCCTCTCGCTATGCTATTTCTATTCGTTGGGCATCCATATCCATTAT
GCTATTCCTATTCGTGAAGATAAATCCAAATAGCGATCGGATAAATGATCTCCTCGACCCTCGAC
CTGACCTAAAGAAAGGTGAAAAGTCGAGACCCTCCTCCCCCTTGGCCTCGAGCAGAAATGCCGTC
GGCCATATCTCTATATAGGGTTATAGGGGGCCCTCCGGAGTCCCTCAACTCGATCTATCCCGCAG
CTACTCTTCTAGTGTAGGCTCGGTTTCTTGATAGGTATAGGTTAGTGCCGGGTAAATGTAGGTAC
AGCACAGCCGCATTGACCCAAGGACCGAACCAAACCGGAGGGACATCGGGCTAATCGATAGTAGC
TGATCTATAGGTAGTCTATAGTGGGCCGATTTCTCTGGGTAAGAC
Right flanking sequence: Indices 355290 -- 355789
GTTTTTATCGAACCCAACGCTGACCCCAGCCGATCTTTATTAACCCCAGACCCCAGCTTAGCTTT
ATGAACTTCCTCTTCTATGGAGCCGATCTATGGAGCTGGCTTTATATCTCCCCCAGAACTAAACT
CTCCGGGGAATAGTCAAACTACCCGGGGAATGGACAAAATCCTCTCCCTAGCGGTCGAGCCTGCT
TGCGCATCCTCTCCTTATCAGTCGAGCCTGCTTGCGCATCCTCTCCTTATCAGTCGAGCCTGCTT
GCGCATCCTCTCCTCGGGAATATCCTAGGGTAGAAACCACATACCATAGGGTAGGGTGTGTATAT
AGATAGAGAGTCAATATAGATATAGATCCTAGTAACCCAGCTACTGCTATCATTCGTATTCTTTA
TGTATAAGCCTCGACCTCCATCTATACAGAGGGGGTTTTTGACCGGACCAGACAGTTCTGTTTCC
GACCGCCTTATATTATCTACAGGAGATCGGAGATTGGGGATTGGA
Found at i:355509 original size:32 final size:32
Alignment explanation
Indices: 355458--355563 Score: 185
Period size: 32 Copynumber: 3.3 Consensus size: 32
355448 AATGGACAAA
* * *
355458 ATCCTCTCCCTAGCGGTCGAGCCTGCTTGCGC
1 ATCCTCTCCTTATCAGTCGAGCCTGCTTGCGC
355490 ATCCTCTCCTTATCAGTCGAGCCTGCTTGCGC
1 ATCCTCTCCTTATCAGTCGAGCCTGCTTGCGC
355522 ATCCTCTCCTTATCAGTCGAGCCTGCTTGCGC
1 ATCCTCTCCTTATCAGTCGAGCCTGCTTGCGC
355554 ATCCTCTCCT
1 ATCCTCTCCT
355564 CGGGAATATC
Statistics
Matches: 71, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
32 71 1.00
ACGTcount: A:0.11, C:0.40, G:0.19, T:0.30
Consensus pattern (32 bp):
ATCCTCTCCTTATCAGTCGAGCCTGCTTGCGC
Left flanking sequence: Indices 354958 -- 355457
AAAGTCGAGACCCTCCTCCCCCTTGGCCTCGAGCAGAAATGCCGTCGGCCATATCTCTATATAGG
GTTATAGGGGGCCCTCCGGAGTCCCTCAACTCGATCTATCCCGCAGCTACTCTTCTAGTGTAGGC
TCGGTTTCTTGATAGGTATAGGTTAGTGCCGGGTAAATGTAGGTACAGCACAGCCGCATTGACCC
AAGGACCGAACCAAACCGGAGGGACATCGGGCTAATCGATAGTAGCTGATCTATAGGTAGTCTAT
AGTGGGCCGATTTCTCTGGGTAAGACCCGAAGGAGAGAAAGGAGCCTGGCCGAAGGAAAGGAAGG
AGCCTGGGTTTTTATCGAACCCAACGCTGACCCCAGCCGATCTTTATTAACCCCAGACCCCAGCT
TAGCTTTATGAACTTCCTCTTCTATGGAGCCGATCTATGGAGCTGGCTTTATATCTCCCCCAGAA
CTAAACTCTCCGGGGAATAGTCAAACTACCCGGGGAATGGACAAA
Right flanking sequence: Indices 355564 -- 356063
CGGGAATATCCTAGGGTAGAAACCACATACCATAGGGTAGGGTGTGTATATAGATAGAGAGTCAA
TATAGATATAGATCCTAGTAACCCAGCTACTGCTATCATTCGTATTCTTTATGTATAAGCCTCGA
CCTCCATCTATACAGAGGGGGTTTTTGACCGGACCAGACAGTTCTGTTTCCGACCGCCTTATATT
ATCTACAGGAGATCGGAGATTGGGGATTGGAATTATGACCGGATAGGGATAGATTCATTACCAGA
TACCGGATACCCGCCCTATAGAACCATTAGGGCCTGATTGGAGATTGGAATTATGACCGGATAGG
GATAGAAATAGGGATAGGTTTCTTACCCGATTAGGTCCCAGACCGGACCGGATTAGGTAGTTTAA
TGACCGCCTCCCCCACCCCAATAAGACCGGCCGCCACAGACCTACCGTGATTCAGCAGCTGATGA
GGATCCTTATTCTGCTGCCTTTTCTCCTACTTATCCTTACTATAT
Found at i:356985 original size:21 final size:22
Alignment explanation
Indices: 356942--356987 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
356932 CGCCTTCCAT
*
356942 CCTCCTTCACTTTCTACCTTCG
1 CCTCCTTCACTTTCGACCTTCG
356964 CCTCCTTCACTATT-GA-CTTCG
1 CCTCCTTCACT-TTCGACCTTCG
356985 CCT
1 CCT
356988 TCTTATTCTC
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
21 8 0.36
22 12 0.55
23 2 0.09
ACGTcount: A:0.11, C:0.43, G:0.07, T:0.39
Consensus pattern (22 bp):
CCTCCTTCACTTTCGACCTTCG
Left flanking sequence: Indices 356442 -- 356941
AGGATGGCTCACCTGACAACGGAAGGTGAGGAAGGCCTGGGTTGTTTGTTCTTGTGAAAGTGGCG
CATCTCTTTTTCTTTGGCATCTTGGATGATACTTGTCTTTATTTGAGGTACTATGTGTCTTTTAC
AGCATTTGACTTTTTCTTAATGTTAGTGTATGCATGAGTTACTGCAACCCTACGTTGCTTGCTTT
AACCGGTATACTTAATATCTTTGTTAAGAACACGAGAGAAGCATTGTTGGTAATAGATCCCTTCA
TCATCATTTTAGACCTTGTCATTCCAAGTAGGTCCTCTAGACCTAGTAGTACCCTACGTGCTCCT
ACTAGGCTACGGAATACGTCACTGTTTAAGAGAGTTGCAAGACTTGACTCCATTAACCCTAGCCA
AGGCACTGACCTAGTTTATTTATCTCTCATAGATACAAATTTGGTGGAGAGAACCTAAGTCATTC
TTCCCAAAAAGACCTAGGCGAGCCTCTTCTTGCCTCGCCTTCCAT
Right flanking sequence: Indices 356988 -- 357487
TCTTATTCTCTGTGTTATTTTGACTCGTTTTATGGATGCCCCAGACCTAGGAACCCTAACGACCT
AGCCCAACTTGCAACGAGGAAACCCCCTAAGACCTGATCCCATTTCACTTTCACCTCGCCCTAGG
ACACTTGCTTAGGGAGACTACAGCATTGAACCCTGGTTGAATAGATCATTGACCCCACAACTAGC
TCAGCAACTCTCTACTTACCTTAGTTAGATTCTTTAGAGCATCAAACCCTCACCATATGAATAGT
GAGTGACCCCTCACCATCGGAATAGTGAGTGGCTCCGCCCCTAAATAATATAGGGCCCTAGATAC
TTCTTCATTAGTAGCTACAACATTAGGAATATTCTTAGGTTGAATTACTAGTAATTACCACTCTT
CTATCTCAAGAAGCTAGTGAAGAAGGAGCTTTCGGACATTAGAAACAGAACCACATATATTCTTT
ATATTAGGAGGAAGCCCTGCGGGGCCATGACACATAGGTTAGTTA
Found at i:357263 original size:26 final size:26
Alignment explanation
Indices: 357229--357278 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
357219 GAGCATCAAA
*
357229 CCCTCACCATATGAATAGTGAGTGAC
1 CCCTCACCATAGGAATAGTGAGTGAC
*
357255 CCCTCACCATCGGAATAGTGAGTG
1 CCCTCACCATAGGAATAGTGAGTG
357279 GCTCCGCCCC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (26 bp):
CCCTCACCATAGGAATAGTGAGTGAC
Left flanking sequence: Indices 356729 -- 357228
GTAGGTCCTCTAGACCTAGTAGTACCCTACGTGCTCCTACTAGGCTACGGAATACGTCACTGTTT
AAGAGAGTTGCAAGACTTGACTCCATTAACCCTAGCCAAGGCACTGACCTAGTTTATTTATCTCT
CATAGATACAAATTTGGTGGAGAGAACCTAAGTCATTCTTCCCAAAAAGACCTAGGCGAGCCTCT
TCTTGCCTCGCCTTCCATCCTCCTTCACTTTCTACCTTCGCCTCCTTCACTATTGACTTCGCCTT
CTTATTCTCTGTGTTATTTTGACTCGTTTTATGGATGCCCCAGACCTAGGAACCCTAACGACCTA
GCCCAACTTGCAACGAGGAAACCCCCTAAGACCTGATCCCATTTCACTTTCACCTCGCCCTAGGA
CACTTGCTTAGGGAGACTACAGCATTGAACCCTGGTTGAATAGATCATTGACCCCACAACTAGCT
CAGCAACTCTCTACTTACCTTAGTTAGATTCTTTAGAGCATCAAA
Right flanking sequence: Indices 357279 -- 357778
GCTCCGCCCCTAAATAATATAGGGCCCTAGATACTTCTTCATTAGTAGCTACAACATTAGGAATA
TTCTTAGGTTGAATTACTAGTAATTACCACTCTTCTATCTCAAGAAGCTAGTGAAGAAGGAGCTT
TCGGACATTAGAAACAGAACCACATATATTCTTTATATTAGGAGGAAGCCCTGCGGGGCCATGAC
ACATAGGTTAGTTACCATCATTGGTTACTCTTAGGAAGGGACAGCAATGGGTACGTCCTCGCCCC
CACCCTAGCCCCTCGGATACGGATTCTTAGATTAGGGGTTCTCTCTTGGTTCAGAAGCAATGAAT
TCTTTTATTGCATTAGGGGGAAGCCGACCGTGAATCTCTAGGTCTTATTCCTTTTAGTCATAAGG
AAGGATGGAAGGGAGAGACAATAGAAATAAGTAGAGTTTAGATTGGAAGTATTTCAATGTGTTAG
TTATTCATAACTCAAGGTATGATTATTCAACATTGGTTTCACATG
Found at i:368364 original size:20 final size:20
Alignment explanation
Indices: 368339--368376 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
368329 TCGCTCCTTG
*
368339 AAACTTACTTATTTTTCTAT
1 AAACTTACTTATTCTTCTAT
368359 AAACTTACTTATTCTTCT
1 AAACTTACTTATTCTTCT
368377 TCCATTCTCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.29, C:0.18, G:0.00, T:0.53
Consensus pattern (20 bp):
AAACTTACTTATTCTTCTAT
Left flanking sequence: Indices 367839 -- 368338
TAGTATTGTGGGTGCGCTTCAATACCTGACCATGACTCGACCAGACTTGTCCTACGCCGTGAATC
AAGTCTGTCAGTTTATGCATGCCCCCACTACTACTTACTTTGAGGCAGTCAAGCGCATCTTACGT
TACTTAAAAGCAGGGGTATGGTCTTCGTTTTCGACCAATCACAAATGTGTGCCTTCTTGCTTATT
CTGATGCTGATTGGGCCGGGTGCCCTGATGATCGCCGCTCCACTTCTGGTGGCTGCATATTCCTT
GGCCCCAATCTTATCTCTTGGTGCTCTCGCAAACAGCCGACTCTTTCTCGTTCCAGTGCTGAGGC
CGAATATCGAGCTCTTGCCACACTTACTGCCGATATATGCTGGCAACAGTCGTTGTTACGTGATC
TTGGTGTCTTTCTCAAAGCTCCGCCAACATGATTCTGCGACAACATCAGTCCTTCGTCCTTCCTG
AGATAAATACCTTGCCCCCGGAGGGACAAGCGGCTTCGCTCCTTG
Right flanking sequence: Indices 368377 -- 368876
TCCATTCTCAATATATATGTAAAAACAAAGGATTGAGGGGAATGAAGAGGGCCTGCCTTTGCCTG
CCTATTGATTGATCGATCGAGGCTTCATAAGCGCCTTATAGAATCTGTATTGACTAAAGACCTAA
CTCCATCCAATTAAGTCGTTAGTGCACCCTCCACTTCGTTAATAGGGTGAAGTCTTGGGTTAACC
CATTATTTCCCTGGCCCCTGCTTGCTTATATCCATTGAAAGGGTGGTGTTTTCGCCTTAAAGATC
TCTGACCAGCTGCCCTATCCATTCATCTCTATTGAATTGATTCACGAGCAGGCACAGCACAGAAT
GGAGGCAGAGTCATATGCAGCACCTACTTATATCGGTGGCATTCGTCATCCTTACCATTCCAGCT
AGTCCTGCTTTCCCTGATTACTAGACCCATCTAACTAACTGGTTCTCACCAGCCAGCGACATAGA
TCCCTGCCCACCCGCCGTACGCGAACGACGCTTTCCGAATTGACC
Found at i:369552 original size:8 final size:8
Alignment explanation
Indices: 369539--369563 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
369529 ATGTAATTGA
369539 GTCTGGCT
1 GTCTGGCT
369547 GTCTGGCT
1 GTCTGGCT
369555 GTCTGGCT
1 GTCTGGCT
369563 G
1 G
369564 GCTTTACACG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.00, C:0.24, G:0.40, T:0.36
Consensus pattern (8 bp):
GTCTGGCT
Left flanking sequence: Indices 369039 -- 369538
AGGATCGGCCTACTCTACTCATCTACTCATAATGGGTGGTCCTACCCATACCTAAATGGATAAGT
GTTCTATAGTAGTTTCATTAATGGGGATCGTCAGCGAGCCTACCAGTATGGGCCTTTTAGGGATA
TTGGGTAAACCAGGAAGAGGGAGTGATCTAAGCAAGATGTATCCCCCTCTCTTTGTTGGCCCTTA
TATCTCTATATCTTACCTATCCCAACAAGCAAGAGTTGGCTGGTCGACACCAATTGACTTGTTTT
CTCAGCTCGCGCCCCCCGGGGCCGGCATTGATTGATCATTCATTTCAAGGGGGGTACTGCTAACT
ACCTTTTCCCCAATAGTGATTGATAGTTCTGATCCTGCACCTCGAGAAAATGCTGTTTCCAACTG
AGATTATGTTCCACTTTATGATAAGCGGATTGGGCGGAGCTCGAATAACAGGATTGGAGTACGCC
GATCTCCTCTGAAAATAGATCGGCGACTAGGTCCAATGTAATTGA
Right flanking sequence: Indices 369564 -- 370063
GCTTTACACGCGATGAAATTTGTGAGGGGAAATGCAGCTGGAAATGAAAATGGGCAATGGGCAAT
GAAAAGAAACCCCAAAAGGCTTTCTTAATGGGTGCAATAATATCGTAGGATACCATAATCCACTA
TTGCAGGAAGGAATGAAATGAAACGCTGCACGAACGACGGCCGGTGTGAGGTAGGTACTGCTCGA
ATAAGTATGATTTGTCCTGATTTGACCTGAGCTATGTGCTCTATTGATTACCTTCAAATCACTAT
TTGAAGACAGACAGAACAGAAGAAGATGTGACGCGCATTACTTACGAGCATGTCGCTTTAAGTCA
ACCTAAGGATTGCTGGATTGCTCACCCAAAGGATTTCCCCTCACCCTCACCAAATAAGTCACTTA
GGATCAGGAAAGAAAAGCGTAATTACGTAGATAAAGAATGAATGCATAATGACATATGCCCATAG
CAGCATTGTCGAAGATCAGCACTTACTTACCTTCTCAAAGGGGAA
Found at i:370268 original size:34 final size:34
Alignment explanation
Indices: 370230--370314 Score: 154
Period size: 34 Copynumber: 2.5 Consensus size: 34
370220 GAGCAAGGAC
370230 AAGCGGCTTCGCTCCTTCCCC-TCTTTTGTCGGGA
1 AAGCGGCTTCGCTCCTTCCCCTTC-TTTGTCGGGA
370264 AAGCGGCTTCGCTCCTTCCCCTTCTTTGTCGGGA
1 AAGCGGCTTCGCTCCTTCCCCTTCTTTGTCGGGA
370298 AAGCGGCTTCGCTCCTT
1 AAGCGGCTTCGCTCCTT
370315 ACCATAAAGA
Statistics
Matches: 50, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
34 48 0.96
35 2 0.04
ACGTcount: A:0.09, C:0.35, G:0.24, T:0.32
Consensus pattern (34 bp):
AAGCGGCTTCGCTCCTTCCCCTTCTTTGTCGGGA
Left flanking sequence: Indices 369730 -- 370229
ACGGCCGGTGTGAGGTAGGTACTGCTCGAATAAGTATGATTTGTCCTGATTTGACCTGAGCTATG
TGCTCTATTGATTACCTTCAAATCACTATTTGAAGACAGACAGAACAGAAGAAGATGTGACGCGC
ATTACTTACGAGCATGTCGCTTTAAGTCAACCTAAGGATTGCTGGATTGCTCACCCAAAGGATTT
CCCCTCACCCTCACCAAATAAGTCACTTAGGATCAGGAAAGAAAAGCGTAATTACGTAGATAAAG
AATGAATGCATAATGACATATGCCCATAGCAGCATTGTCGAAGATCAGCACTTACTTACCTTCTC
AAAGGGGAAGAAAGTGACACCATTTGAGGGGAAAAAAGAGAAGTACGATAAGAAACGGAGTTGTG
TCTGTCTACGCTAAAGCGTAATTACGTATATAATAGCAGCATTGTCGAAGGATTGGATTGACCTT
GCCTGAGGAAGGAACGTAGTCGCTTGCTCTTCCGAGAGCAAGGAC
Right flanking sequence: Indices 370315 -- 370814
ACCATAAAGAAAGGCCAACCTCTTTCATTGAACAAAGTTATTAAACTGAGATCATATCGTAGATA
AGGAAGGGGGGATCCATTGCCCCGCCACTTCATTCTGAACTCAAAAAGGGTTCGGTTTCCCGAGG
AATCAAAGGGGGGGGGAAGACCCCGGCCAGAGCAACAAGCAAGTTGGGGTAGAGAGCCGTAAGCG
CGGTGGTGACGGACGTGCTCGTACGGTCCATAGAGGACCGGGTGGGGGGTATGATCCTCTCGTTG
ATTATTGGAAACTGGAACTCCCCCATATCCGAAATATGCTTTTCCAGGAGCATTACGATCTGCAG
CTCAAATGGTCTCTTACGAAGTATCTATTGGTCTTATTATTATTGTGCGCCTCGTGAGCGCGTTT
GGATCCGCTACAGCACTCGGTCGGATGTTACCCTAACCCGACCCGGGAACGGACCGGAGGGAACC
GCAGCATGGGTAATGTCCGCGTCTCGCCGCAAGGCTAATTTTGAG
Found at i:371388 original size:12 final size:12
Alignment explanation
Indices: 371371--371403 Score: 66
Period size: 12 Copynumber: 2.8 Consensus size: 12
371361 ACCCCCCCCC
371371 CCTATCTATCTA
1 CCTATCTATCTA
371383 CCTATCTATCTA
1 CCTATCTATCTA
371395 CCTATCTAT
1 CCTATCTAT
371404 AGAGAGATAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.24, C:0.33, G:0.00, T:0.42
Consensus pattern (12 bp):
CCTATCTATCTA
Left flanking sequence: Indices 370871 -- 371370
TCCTGGTACTATCCAGGTGCGAATAACCCCCGGGGGTGGCTGCAATGGGCAGAGATGCCACTCAT
CGGCCTAAACGACGAGCAAACACTCGAACGTGAGAGCGAGGGATCACCCAACGAATGGACTCTAC
AGCGACAGGAACCATGCTTTTGGATGGAGAAGTGGGAACCTTAATGATGAATAGTAATAGGCCGA
ATCTGAACTGCGGGAATATATATTCGGAACCTAAGGGACTAATATGAATAGGGGCCAGGAATGTA
TGGGTGACAGATCGGCCATAAATGTACTCCGGAATATACACCAGGGCAACAAATGTCGGTCGACG
ATGCCGCCCGTTTCCATTTCGTGGAAGTGCTCGGCAGAGGAAGGGGCTGTAGGTGATGATGATGC
CCCTATTGATGAAGGAATCGCTGGGCACCTATTTCTTTCTCTCTTATTTATTTCATAGGCAGCAG
GTCCTGGTCAAATCCGGTGGGTGCCGCAAGGTTATACCCCCCCCC
Right flanking sequence: Indices 371404 -- 371903
AGAGAGATAGTAGCGAGGGGTAGGTATCGGTCCGATAGGGATAACCTTAATTCTTAATCAAAAGG
TTCAATTGACTTATTTTGTGCCCCTCTCAAATAAGTAACTAGCTTATGGTCGAGCCTGCTTGCGC
ATCCTTCAAGGCCCTCGCCTTCGGAGGGCTCGCGTTCGTTCCTCGCCCTCTACAGTAGTGCGAGT
CACTTCACGTACCTCGGCCATAACGACCGAGCGACTCGTCCCTCGTACCTTTTTGGTTTGCTTAT
TGGGTGGGGGGCTTATGGGTGAGCAATAAATCACCTTTGTCGGTCGAGTGTGAAAACCCTCTCCT
GGACAGTCGAGTGTGCGTTAGCACCCTCACCATATGAATAGTGAGTGTGCTAACGCACCCTCTCC
CCTCCTCTCAAATAAGTAACCAAAGGCAGTCGAGTGTGCTTACGCACCCTCACCATATGAATAGT
GAGTGGCTCCGCCCCTAAAGAATATAGGGCCCTCTCCTTGGACAG
Found at i:374003 original size:118 final size:118
Alignment explanation
Indices: 373795--374029 Score: 470
Period size: 118 Copynumber: 2.0 Consensus size: 118
373785 GGTTTCACCT
373795 TCCCCTCGCTATGCCCCTTGAAGTAAAAGGTTTCACTTTTTTCCCCTGCTCGCTCGGCTCGGGAA
1 TCCCCTCGCTATGCCCCTTGAAGTAAAAGGTTTCACTTTTTTCCCCTGCTCGCTCGGCTCGGGAA
373860 AGGTTTTTCCTTATCTGTCTGGTGGGGAAAACGGATTGACTTACAGATAGTGG
66 AGGTTTTTCCTTATCTGTCTGGTGGGGAAAACGGATTGACTTACAGATAGTGG
373913 TCCCCTCGCTATGCCCCTTGAAGTAAAAGGTTTCACTTTTTTCCCCTGCTCGCTCGGCTCGGGAA
1 TCCCCTCGCTATGCCCCTTGAAGTAAAAGGTTTCACTTTTTTCCCCTGCTCGCTCGGCTCGGGAA
373978 AGGTTTTTCCTTATCTGTCTGGTGGGGAAAACGGATTGACTTACAGATAGTG
66 AGGTTTTTCCTTATCTGTCTGGTGGGGAAAACGGATTGACTTACAGATAGTG
374030 AACCTCCCAG
Statistics
Matches: 117, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
118 117 1.00
ACGTcount: A:0.19, C:0.25, G:0.24, T:0.32
Consensus pattern (118 bp):
TCCCCTCGCTATGCCCCTTGAAGTAAAAGGTTTCACTTTTTTCCCCTGCTCGCTCGGCTCGGGAA
AGGTTTTTCCTTATCTGTCTGGTGGGGAAAACGGATTGACTTACAGATAGTGG
Left flanking sequence: Indices 373295 -- 373794
CTCCTTGGACGAGCACTTCGGACGTAGAACCGGGTCGCGCTGCTTGACGCTTTCACATATTAGGT
GCGCGGCACTATCATCTGCCTGCAGGCAGGGAGACAGCTCTATGCCAGTACGACAGAATATGCGT
TAGAAAGGGAAATCCCTATACTATAGTGCCCCCTGCGACACGCATTACATACGATAGTACATAAA
CGCCGGGCCAATATCGATCGTGGCAACGTAAACCTAGGTGGGAATATTTGATCCCAGGGAACCAT
CACAAGGACGGTCAGACGACGGGAGGAACGTCGATGTCGTCCAGCGGAGCCTAGAGGAGGGTTAC
TCGGAGCTATAAGTAAGAAGGTGACTCGCGCAGGCAGCTGACTCCTCTTCAATAGAGATGAATAG
ATAGGGCAGCTGGCTGGTCAATCTCAGAGATCTGATCGGCCGGCGGGCGACCGCCCCCCCCCCCC
TTCCCCGTTAAGCGGGTTGAAGTTAAGCTAAGCGGGGTTTCACCT
Right flanking sequence: Indices 374030 -- 374529
AACCTCCCAGTTCGATCGATAAGGCCTATAGAGTATCATGATGACCCGGTCGAGGGCGATACATC
GGTGTGAAATTCTTTGGTGAAGTTATAGCAAGGCCGGCCTGAAGTGCGCAGCTACAAGAGGCTAT
AACAAGGCTTTCCGAGGTGCTTGACCGGGCGCAGCTTGGGGTTTCCCGCCCAAGGGGAAGGCGAC
CTTGTAATCCTGAAAACGGTGCCCGCTCGCTACGCTAATAGGGCAGGTAGAAAAAAAAGGGGGGG
CGGCTTCGTTATCGAGAGGGTTCCCTTCCCCCCCCCCCCCAAAAAAAAAGATAGATTCAGTGAAC
CAACTCTCTCTGTGATTGATTCGGCTTACCCGGTAGATGAATGGAATTCATCAATTAAGTAGATC
GATCCACCGGGATCAATAATAATAGCACGTGAGTGAAAAGCCATCAAGCAAACCATCTATGCTCT
TAAAAGCATAACTGGAGGCTTAGCCAATTCCGGTATGAATATTCT
Found at i:374630 original size:33 final size:33
Alignment explanation
Indices: 374588--374694 Score: 214
Period size: 33 Copynumber: 3.2 Consensus size: 33
374578 CACTCACGCA
374588 CTCCTCGCCCTCCTTCTGTCAGGCGAGTAGTCC
1 CTCCTCGCCCTCCTTCTGTCAGGCGAGTAGTCC
374621 CTCCTCGCCCTCCTTCTGTCAGGCGAGTAGTCC
1 CTCCTCGCCCTCCTTCTGTCAGGCGAGTAGTCC
374654 CTCCTCGCCCTCCTTCTGTCAGGCGAGTAGTCC
1 CTCCTCGCCCTCCTTCTGTCAGGCGAGTAGTCC
374687 CTCCTCGC
1 CTCCTCGC
374695 ACTCGAAATG
Statistics
Matches: 74, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 74 1.00
ACGTcount: A:0.08, C:0.44, G:0.21, T:0.27
Consensus pattern (33 bp):
CTCCTCGCCCTCCTTCTGTCAGGCGAGTAGTCC
Left flanking sequence: Indices 374088 -- 374587
ATACATCGGTGTGAAATTCTTTGGTGAAGTTATAGCAAGGCCGGCCTGAAGTGCGCAGCTACAAG
AGGCTATAACAAGGCTTTCCGAGGTGCTTGACCGGGCGCAGCTTGGGGTTTCCCGCCCAAGGGGA
AGGCGACCTTGTAATCCTGAAAACGGTGCCCGCTCGCTACGCTAATAGGGCAGGTAGAAAAAAAA
GGGGGGGCGGCTTCGTTATCGAGAGGGTTCCCTTCCCCCCCCCCCCCAAAAAAAAAGATAGATTC
AGTGAACCAACTCTCTCTGTGATTGATTCGGCTTACCCGGTAGATGAATGGAATTCATCAATTAA
GTAGATCGATCCACCGGGATCAATAATAATAGCACGTGAGTGAAAAGCCATCAAGCAAACCATCT
ATGCTCTTAAAAGCATAACTGGAGGCTTAGCCAATTCCGGTATGAATATTCTACCTCTACTTCCT
CCCGCCCGGTACATACATGATGCATCCTATCACTTCACTCACGCA
Right flanking sequence: Indices 374695 -- 375194
ACTCGAAATGTACTCGGAATAACTTACTACTTATCGATGGATGGAGTTCCAATTGCTTGCCTGAA
TTTGTACTACCTTCAGTTACCGATACTATCCACTTACCCAGCACTCCATTACCCCGCTGTGAGAC
GAGCACACTGCCCCTGAGGACATGTCACATCAACCATAAACCCGCTTGCTCATATATGCCAACCA
AATCGATGGACGAAGTCGACCTTGTTCACCCACTCCACTATTTAGACGATCTTCCATAATGGGTC
CTAACGCTTGGGCATTCAATGCCCGTGATACCAAGCAAGATTGAAAGGGTTGCCCTATATGTATG
CTTTTTTCGCCTATGCATGGTGTTTTTCCCCGAACATAATCCTAGTTCCCCCCCTCTTCTCTTAC
TTATTTCGGAGACGTGTGATTCACCACCCAAAACAGGACTTGGAAAGACCGGATAAAAAAAAGAG
GCGCGGTGCCTCCATTACAAACCATAACCATACAAATATAAGGTC
Found at i:375410 original size:12 final size:12
Alignment explanation
Indices: 375393--375417 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
375383 CCTTCTTTCC
375393 ATATGGAGGTGT
1 ATATGGAGGTGT
375405 ATATGGAGGTGT
1 ATATGGAGGTGT
375417 A
1 A
375418 ATCGTCCCCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.28, C:0.00, G:0.40, T:0.32
Consensus pattern (12 bp):
ATATGGAGGTGT
Left flanking sequence: Indices 374893 -- 375392
CGATGGACGAAGTCGACCTTGTTCACCCACTCCACTATTTAGACGATCTTCCATAATGGGTCCTA
ACGCTTGGGCATTCAATGCCCGTGATACCAAGCAAGATTGAAAGGGTTGCCCTATATGTATGCTT
TTTTCGCCTATGCATGGTGTTTTTCCCCGAACATAATCCTAGTTCCCCCCCTCTTCTCTTACTTA
TTTCGGAGACGTGTGATTCACCACCCAAAACAGGACTTGGAAAGACCGGATAAAAAAAAGAGGCG
CGGTGCCTCCATTACAAACCATAACCATACAAATATAAGGTCAAACCTTTTACTTCCCTCTAAAC
ACATACACACACTCGCTCGTTTCGGGTTTTTCCTTTTCATGAATATCCATATGAAAAGATGCATA
TCAAAAGGTGATCCCCGAATATGGTTTCCGACGATCCCGGATAACAGGAGATAGACTTTGACTCA
TTATGGTGAAATCAGAGAATGGAGGTAGGGCTTCGCCTTCTTTCC
Right flanking sequence: Indices 375418 -- 375917
ATCGTCCCCTGAATGTAGGTTTCCTCGATGGTGATTTCCTTGCCCCCCGGAGGGACAAGCAGCTT
CGCACCTTGGATACTTATATGTAACTGATATGTATTTCCTTGGCTACTGATAGCACTTAACTTAA
CTGAAAGCACTGATAAGGCCACTGATAGCACTTAACTTAACTGATAGCACTGAACAGGCCGGCCG
TTGTAGTTGTCTCCGCTGGCCCCCCTACTCTTCTTAGTGGTTTTTTGCTTGAATCCCCCTTAATC
ATATATAGGAATGTGTGCCCGGCCTTCTGTTTCTAGTAGGAGCAGGTGAAACGGGTCGCAGGGAA
TAGAGTCAACTGGGAGAAATGGGTGGGATATTTCTCTTTGGGGGCCCTTATTTATTAGAAATGTG
GAATGGGAGGGCTGGGTCCGCCCGAGCTCATGCGTGCCCCCCCTTATTATTGACTTTTAAGGCCC
CGGGCTTAAATAAGAGTCCCTTGGTTACTCTCCGCACTTCGATGG
Found at i:375556 original size:19 final size:19
Alignment explanation
Indices: 375528--375598 Score: 79
Period size: 19 Copynumber: 3.6 Consensus size: 19
375518 TTCCTTGGCT
375528 ACTGATAGCACTTAACTTA
1 ACTGATAGCACTTAACTTA
* ****
375547 ACTGAAAGCACTGATAAGGCC
1 ACTGATAGCACT--TAACTTA
375568 ACTGATAGCACTTAACTTA
1 ACTGATAGCACTTAACTTA
375587 ACTGATAGCACT
1 ACTGATAGCACT
375599 GAACAGGCCG
Statistics
Matches: 40, Mismatches: 10, Indels: 4
0.74 0.19 0.07
Matches are distributed among these distances:
19 26 0.65
21 14 0.35
ACGTcount: A:0.37, C:0.23, G:0.15, T:0.25
Consensus pattern (19 bp):
ACTGATAGCACTTAACTTA
Left flanking sequence: Indices 375028 -- 375527
GCCTATGCATGGTGTTTTTCCCCGAACATAATCCTAGTTCCCCCCCTCTTCTCTTACTTATTTCG
GAGACGTGTGATTCACCACCCAAAACAGGACTTGGAAAGACCGGATAAAAAAAAGAGGCGCGGTG
CCTCCATTACAAACCATAACCATACAAATATAAGGTCAAACCTTTTACTTCCCTCTAAACACATA
CACACACTCGCTCGTTTCGGGTTTTTCCTTTTCATGAATATCCATATGAAAAGATGCATATCAAA
AGGTGATCCCCGAATATGGTTTCCGACGATCCCGGATAACAGGAGATAGACTTTGACTCATTATG
GTGAAATCAGAGAATGGAGGTAGGGCTTCGCCTTCTTTCCATATGGAGGTGTATATGGAGGTGTA
ATCGTCCCCTGAATGTAGGTTTCCTCGATGGTGATTTCCTTGCCCCCCGGAGGGACAAGCAGCTT
CGCACCTTGGATACTTATATGTAACTGATATGTATTTCCTTGGCT
Right flanking sequence: Indices 375599 -- 376098
GAACAGGCCGGCCGTTGTAGTTGTCTCCGCTGGCCCCCCTACTCTTCTTAGTGGTTTTTTGCTTG
AATCCCCCTTAATCATATATAGGAATGTGTGCCCGGCCTTCTGTTTCTAGTAGGAGCAGGTGAAA
CGGGTCGCAGGGAATAGAGTCAACTGGGAGAAATGGGTGGGATATTTCTCTTTGGGGGCCCTTAT
TTATTAGAAATGTGGAATGGGAGGGCTGGGTCCGCCCGAGCTCATGCGTGCCCCCCCTTATTATT
GACTTTTAAGGCCCCGGGCTTAAATAAGAGTCCCTTGGTTACTCTCCGCACTTCGATGGCATTTC
CAAAGAGGCCCCTATTATTATCTAAGGTGGTATGGGCGCACGAACTCTTACTTCTATAATGCTTG
CTGCCCACTCTGTTGATAGTCAATATGATCCCACCACCCTTCGACCCGATCCCACAAACTAATTC
CCACCTGAAATAATAAGAGTAGGGTGGCTTTCATAATAATAGGGC
Found at i:382525 original size:17 final size:17
Alignment explanation
Indices: 382503--382536 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
382493 CTGAGGCTGG
382503 GCTGTAACGGGCTTAGC
1 GCTGTAACGGGCTTAGC
382520 GCTGTAACGGGCTTAGC
1 GCTGTAACGGGCTTAGC
382537 TGTAACGAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.18, C:0.24, G:0.35, T:0.24
Consensus pattern (17 bp):
GCTGTAACGGGCTTAGC
Left flanking sequence: Indices 382003 -- 382502
AGTCCATCTTTTTCCCCTCGACTCTCGAAAGGGTTGTAACAGCACTCACCAATTCAATTTTATCT
GCCGTATGATCTGGGTTTACGTCGTTTTGAAAATGGGCGGGCTCGACCGAAACGGGCACAGCTCG
ACACTTCTTCCCCTACCAGAGATTAAGAATCTTTTAGGTCGCTTTCCCATTCATATTACATGTGT
AATACTGCCCTGGTGGTGAGGGAGAACTCATTTCTGTCCTCGACCTTAAGACTGAGAGAGAAATT
TGAGATAGAGTTTCCGGGTCAATGCGAACGGCCTAGTTGGATCGTTTCAAACCGCCTCTTCTCCT
CATTGGTTGGCACGAAATATCGTATATGAGCAAATAGATTCTCTCCTTCTCCGCTCTGTAGTTTC
GAATCTTTCCTTTTCCTGTCATGATCTATTCATTTCCTCCCTTCTTGTTACGAGGTCTCCCCAGC
AATGGGGCTACTGGGCTGTAACGAAAGAAAGCCTTCTGAGGCTGG
Right flanking sequence: Indices 382537 -- 383036
TGTAACGAAAGAAAGCCCTCTTGGGCGGGCGGGAGCCGTACTGAGCAGCGGGAGTATCCCCTCCC
TTTCTGTCACGAATCATATCTTCCCCCTTTTTCACCCGGTAAGTCTACTATTAAGGACTAATTTG
GTAGGGGGCCTCAATCTAGCTCTTTGAGGGGGCCCCAAAATTGAACTTTCTTCGACGAATCGAAC
AACTGCTCAGAGAATAGAACATGACTGATAACATCTGATTGGGTTGGTTTGAGGTGGGTTGGTAT
CTCCTTCTAGTTGCATAGAGAAGCAACTTTGGTAAGCGAAGGTAGGACTTTGACTTACCTAGTCG
ATGAATCTATCTATGAAGGGTTACAAGGAAGATAATGGATAGAACTCACAATCTTTTGGTAGGAT
AATAGAAGTATGCGTAAATTACGATTGGTAGGTGTAAATGAAGGTAGGCATAAAGGAAGAGAAGT
AGGTGAAAATAACAATGCTGCTTTTGGACAGCACGGTATAGATAG
Found at i:382540 original size:15 final size:16
Alignment explanation
Indices: 382503--382543 Score: 66
Period size: 17 Copynumber: 2.6 Consensus size: 16
382493 CTGAGGCTGG
382503 GCTGTAACGGGCTTAGC
1 GCTGTAACGGGCTTA-C
382520 GCTGTAACGGGCTTA-
1 GCTGTAACGGGCTTAC
382535 GCTGTAACG
1 GCTGTAACG
382544 AAAGAAAGCC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
15 9 0.38
17 15 0.62
ACGTcount: A:0.20, C:0.22, G:0.34, T:0.24
Consensus pattern (16 bp):
GCTGTAACGGGCTTAC
Left flanking sequence: Indices 382003 -- 382502
AGTCCATCTTTTTCCCCTCGACTCTCGAAAGGGTTGTAACAGCACTCACCAATTCAATTTTATCT
GCCGTATGATCTGGGTTTACGTCGTTTTGAAAATGGGCGGGCTCGACCGAAACGGGCACAGCTCG
ACACTTCTTCCCCTACCAGAGATTAAGAATCTTTTAGGTCGCTTTCCCATTCATATTACATGTGT
AATACTGCCCTGGTGGTGAGGGAGAACTCATTTCTGTCCTCGACCTTAAGACTGAGAGAGAAATT
TGAGATAGAGTTTCCGGGTCAATGCGAACGGCCTAGTTGGATCGTTTCAAACCGCCTCTTCTCCT
CATTGGTTGGCACGAAATATCGTATATGAGCAAATAGATTCTCTCCTTCTCCGCTCTGTAGTTTC
GAATCTTTCCTTTTCCTGTCATGATCTATTCATTTCCTCCCTTCTTGTTACGAGGTCTCCCCAGC
AATGGGGCTACTGGGCTGTAACGAAAGAAAGCCTTCTGAGGCTGG
Right flanking sequence: Indices 382544 -- 383043
AAAGAAAGCCCTCTTGGGCGGGCGGGAGCCGTACTGAGCAGCGGGAGTATCCCCTCCCTTTCTGT
CACGAATCATATCTTCCCCCTTTTTCACCCGGTAAGTCTACTATTAAGGACTAATTTGGTAGGGG
GCCTCAATCTAGCTCTTTGAGGGGGCCCCAAAATTGAACTTTCTTCGACGAATCGAACAACTGCT
CAGAGAATAGAACATGACTGATAACATCTGATTGGGTTGGTTTGAGGTGGGTTGGTATCTCCTTC
TAGTTGCATAGAGAAGCAACTTTGGTAAGCGAAGGTAGGACTTTGACTTACCTAGTCGATGAATC
TATCTATGAAGGGTTACAAGGAAGATAATGGATAGAACTCACAATCTTTTGGTAGGATAATAGAA
GTATGCGTAAATTACGATTGGTAGGTGTAAATGAAGGTAGGCATAAAGGAAGAGAAGTAGGTGAA
AATAACAATGCTGCTTTTGGACAGCACGGTATAGATAGATTTTGC
Found at i:383115 original size:14 final size:14
Alignment explanation
Indices: 383096--383127 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
383086 CATTTCGATT
383096 GATTCGATTGATGC
1 GATTCGATTGATGC
*
383110 GATTCGATTGATTC
1 GATTCGATTGATGC
383124 GATT
1 GATT
383128 GATGCAATGG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.22, C:0.12, G:0.25, T:0.41
Consensus pattern (14 bp):
GATTCGATTGATGC
Left flanking sequence: Indices 382596 -- 383095
CCTCCCTTTCTGTCACGAATCATATCTTCCCCCTTTTTCACCCGGTAAGTCTACTATTAAGGACT
AATTTGGTAGGGGGCCTCAATCTAGCTCTTTGAGGGGGCCCCAAAATTGAACTTTCTTCGACGAA
TCGAACAACTGCTCAGAGAATAGAACATGACTGATAACATCTGATTGGGTTGGTTTGAGGTGGGT
TGGTATCTCCTTCTAGTTGCATAGAGAAGCAACTTTGGTAAGCGAAGGTAGGACTTTGACTTACC
TAGTCGATGAATCTATCTATGAAGGGTTACAAGGAAGATAATGGATAGAACTCACAATCTTTTGG
TAGGATAATAGAAGTATGCGTAAATTACGATTGGTAGGTGTAAATGAAGGTAGGCATAAAGGAAG
AGAAGTAGGTGAAAATAACAATGCTGCTTTTGGACAGCACGGTATAGATAGATTTTGCAATACTA
TCTAGCGTTGGCGGAGAACGATTATAGGTGAATGCCATTTCGATT
Right flanking sequence: Indices 383128 -- 383627
GATGCAATGGTAACCCGAAGGTCGTGGTCACCAACAAACTACTAGATCAGGGTATAAGTGTTACG
TGAGCCAAGTGTTTCGAATCGCTCTACCAGAGCTCTACATGCGCTCTGTTCGGTGCCGGAACCTA
ACCGTCTAATATGAAAATAGGGAAGGCAGGCGGGAAGAAATAAAGAAAATATATGAACTCTGGCT
AGCTCTGCTTGGGATTTACGGGGGGATGGATTTCTCGCTACGGGGGAGGCAAGCACTTCTCGAAC
ATCCTCATTCCATTCAATCCAAGCACAAAGGATCAACTCGATTTGGTGATCGATCTTCCTCTCTC
GGAGCATAAAATGGTTTACTGCTTTATCACCGGAGATCATAGGTTCAGAGAAATGGAATGATGGC
GGTACTGCTATTCGAGTTCCATCTAGATCCCCCAAGGAACAGATAGAGTCCTACCCAAACCTAAG
ACCAGCTAGCTGAGAAAGCCGAAGAGGATGAAACACACGAACATG
Found at i:383116 original size:23 final size:23
Alignment explanation
Indices: 383089--383132 Score: 88
Period size: 23 Copynumber: 1.9 Consensus size: 23
383079 TGAATGCCAT
383089 TTCGATTGATTCGATTGATGCGA
1 TTCGATTGATTCGATTGATGCGA
383112 TTCGATTGATTCGATTGATGC
1 TTCGATTGATTCGATTGATGC
383133 AATGGTAACC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.20, C:0.14, G:0.25, T:0.41
Consensus pattern (23 bp):
TTCGATTGATTCGATTGATGCGA
Left flanking sequence: Indices 382589 -- 383088
AGTATCCCCTCCCTTTCTGTCACGAATCATATCTTCCCCCTTTTTCACCCGGTAAGTCTACTATT
AAGGACTAATTTGGTAGGGGGCCTCAATCTAGCTCTTTGAGGGGGCCCCAAAATTGAACTTTCTT
CGACGAATCGAACAACTGCTCAGAGAATAGAACATGACTGATAACATCTGATTGGGTTGGTTTGA
GGTGGGTTGGTATCTCCTTCTAGTTGCATAGAGAAGCAACTTTGGTAAGCGAAGGTAGGACTTTG
ACTTACCTAGTCGATGAATCTATCTATGAAGGGTTACAAGGAAGATAATGGATAGAACTCACAAT
CTTTTGGTAGGATAATAGAAGTATGCGTAAATTACGATTGGTAGGTGTAAATGAAGGTAGGCATA
AAGGAAGAGAAGTAGGTGAAAATAACAATGCTGCTTTTGGACAGCACGGTATAGATAGATTTTGC
AATACTATCTAGCGTTGGCGGAGAACGATTATAGGTGAATGCCAT
Right flanking sequence: Indices 383133 -- 383632
AATGGTAACCCGAAGGTCGTGGTCACCAACAAACTACTAGATCAGGGTATAAGTGTTACGTGAGC
CAAGTGTTTCGAATCGCTCTACCAGAGCTCTACATGCGCTCTGTTCGGTGCCGGAACCTAACCGT
CTAATATGAAAATAGGGAAGGCAGGCGGGAAGAAATAAAGAAAATATATGAACTCTGGCTAGCTC
TGCTTGGGATTTACGGGGGGATGGATTTCTCGCTACGGGGGAGGCAAGCACTTCTCGAACATCCT
CATTCCATTCAATCCAAGCACAAAGGATCAACTCGATTTGGTGATCGATCTTCCTCTCTCGGAGC
ATAAAATGGTTTACTGCTTTATCACCGGAGATCATAGGTTCAGAGAAATGGAATGATGGCGGTAC
TGCTATTCGAGTTCCATCTAGATCCCCCAAGGAACAGATAGAGTCCTACCCAAACCTAAGACCAG
CTAGCTGAGAAAGCCGAAGAGGATGAAACACACGAACATGCACCA
Found at i:386431 original size:14 final size:14
Alignment explanation
Indices: 386412--386439 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
386402 ATTGATTGAT
386412 TGCTTACGAACTTA
1 TGCTTACGAACTTA
386426 TGCTTACGAACTTA
1 TGCTTACGAACTTA
386440 CTCCAACCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.21, G:0.14, T:0.36
Consensus pattern (14 bp):
TGCTTACGAACTTA
Left flanking sequence: Indices 385912 -- 386411
CCCGCAGCAGCCGCCCCCCACCCAATAAGTAAATACAAAAAAGATCCGTCCATAATTGCGTAAGT
AATCTCATCCCGCGGGGTCGTTTTCTTCTCTCTATTCTAGCCTCCTCGGTTTGTTAGGTCTATCC
AGCAAGAGCATCCCCAGTTCATTGTCTCCACCCCACCAGTTCACAAGAATCGAGATCTCAGCATA
ATAGATCGAAGGCAGGTCGTCGCAAGGTCGAAGCAGTAAGTAAGGCGGCGGGATAAGGCAGCAAG
ATCTCTCAGGCAAGGCAGTAAGTTGAAGGCAGGAAGGTCGAGAGAATATCTAAGTAGGTCGAGAT
CAGATCTCCTCACTCAGGCAGGCGGTAAGATAGATCGATCACAGGTAGGTATGACGCACAGGTTC
AATCATTTTGTCAACCCCGAAGAGAGATTAGATCTTGCTGATCAGCGAAGAACCAAAAGGACACA
GTGAAACGAAAGCCCACCATAAAAACCTACCCGCTATTGATTGAT
Right flanking sequence: Indices 386440 -- 386939
CTCCAACCATAGGGATGTGAAAACCTCAAGTCCACAGTTCGCCGAAAGAGTTTACAACAGCCCGA
AGTGGAGTGGAGGAGCCTACCTGCCTGAGATATGATATATTGATACCGGATCAGCGAACCGAAAG
CAGCGAACCAGCATCGTGTAAAATCAAGCATCGTACCTAACCTAATTGAACCTCATCGTGGAACC
CTTATGTCGTGGAACCTAATCTAACTAACTCACATCATCGTGTCACTTCATTGGAAAGAACCTCC
ACCTCATCATCGGAAACACCTACTTACTTAGTGGAAAAACCTTATTGTGTCACTGTGTTCCGTAC
CGGTAAGTGAAAGGTGAGGTGAATGGGGAAGGCGGTAATGGGTAATGCGGATTGAACGGAATACG
GGTATGCATACTGGTAGGGGAACTTAGAGGGTAATGGGTCATGTACTGGGGAATACGGATTGGAG
AATGCGGGACTGGGAAATGTGAGAATGTGAGAATGCGGGCCTGTA
Found at i:387061 original size:31 final size:30
Alignment explanation
Indices: 387023--387116 Score: 93
Period size: 31 Copynumber: 3.1 Consensus size: 30
387013 CAGTGCTTGG
*
387023 TGGGAACGCTCTTTTCGTAAGACTCATCAGT
1 TGGGAACGCT-TTTTCGTAAGACTCATAAGT
** * *
387054 TGGGAACGCTTTTCTTATAAGACTCCTTA-T
1 TGGGAACGCTTTT-TCGTAAGACTCATAAGT
387084 AT-GGAACGGCTTTTTCGTAAGACTCATAAGT
1 -TGGGAAC-GCTTTTTCGTAAGACTCATAAGT
387115 TG
1 TG
387117 ATAGAATCCA
Statistics
Matches: 50, Mismatches: 8, Indels: 10
0.74 0.12 0.15
Matches are distributed among these distances:
30 21 0.42
31 29 0.58
ACGTcount: A:0.24, C:0.19, G:0.21, T:0.35
Consensus pattern (30 bp):
TGGGAACGCTTTTTCGTAAGACTCATAAGT
Left flanking sequence: Indices 386523 -- 387022
ACCTGCCTGAGATATGATATATTGATACCGGATCAGCGAACCGAAAGCAGCGAACCAGCATCGTG
TAAAATCAAGCATCGTACCTAACCTAATTGAACCTCATCGTGGAACCCTTATGTCGTGGAACCTA
ATCTAACTAACTCACATCATCGTGTCACTTCATTGGAAAGAACCTCCACCTCATCATCGGAAACA
CCTACTTACTTAGTGGAAAAACCTTATTGTGTCACTGTGTTCCGTACCGGTAAGTGAAAGGTGAG
GTGAATGGGGAAGGCGGTAATGGGTAATGCGGATTGAACGGAATACGGGTATGCATACTGGTAGG
GGAACTTAGAGGGTAATGGGTCATGTACTGGGGAATACGGATTGGAGAATGCGGGACTGGGAAAT
GTGAGAATGTGAGAATGCGGGCCTGTAGAATCTGGGGAATATGGGGAACGCCTTTCTTGACAGAT
GGTTTCATTTGGTACGCTATTCTTAGAAGATGGGTCAGTGCTTGG
Right flanking sequence: Indices 387117 -- 387616
ATAGAATCCAATCAATCAGTTCACTCGATCAAAGCCTCTCCCGTAAGACGGGGAGTTTGTCGGAC
CGCGATACGGGTGATGAAGGGGACGCGATCTGTCAGTGAATGATGGGACGCTTTTCTCGTAAGCC
ATAAGGCACGGAACTCTTTCAAATAATGGAGACTTAAGGCTTATTTCTATTGCGCTTTAACTCTA
AGTCCATATGGATGTAGACAACCGTAAGGAGTCTTTCTAGCTAGTACTGACCTTAAAGCTAAGGC
TAGTCCACCTTTAGGCACTTACCGTAAGTCTTTCACTCTCTAAGGCTTGAACTCGAAGGCTTGAA
CTAGGGCTACCGACTAAGGCTAATAAACTCTACAGCTAATAGTCTCTACTGCATCTAGCTTGAAC
TAGAGTGTCCATGGAACTAAGGATAAGACTAAGGCTCTTCTTTCTTACCTTTATAGATGTTATAT
GGAATTTGTTTTTCTCCTCTTATTTTAGTGGAGACTCTATTTCTT
Found at i:390614 original size:19 final size:19
Alignment explanation
Indices: 390592--390640 Score: 98
Period size: 19 Copynumber: 2.6 Consensus size: 19
390582 GCTCCCATTC
390592 CCTCGGATGGCAGGCTATA
1 CCTCGGATGGCAGGCTATA
390611 CCTCGGATGGCAGGCTATA
1 CCTCGGATGGCAGGCTATA
390630 CCTCGGATGGC
1 CCTCGGATGGC
390641 TATACTTTAG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 30 1.00
ACGTcount: A:0.18, C:0.29, G:0.33, T:0.20
Consensus pattern (19 bp):
CCTCGGATGGCAGGCTATA
Left flanking sequence: Indices 390092 -- 390591
TAATGGCATAAAGACAGGAGTCCTTGCCGATCTAAGTGTCTTTCGTGCAAGGAAATGGTGGGATA
CTACACCTACCTCTATTGAGACTGGCTAGTGGCTTACCAGATTGAGGAGAAATCAAATATTCTTG
TCTGTCTGGTGGGAAATGTCAGAAAGAAAGTAGTCTAGTGTACATGAAACTTATTAATGCAATGA
ATGAAAGTTACCATGGATTTCACATAACATCGAAAAAAGGAGGGGAGTTCCACTCCACCACACGT
AGTCGGGAGTAGAAATCTTCTGACAGCAGGGTTGCAGGTATTATTCTAAACAAATGATATCCTGG
CTGGCTTTCCTAAGTGGGTGAAACTATATACTGGATAGAATCTATTTATTCTATACTGGTTAGCT
CTTGGGGGTTAACCTATTGGATAGGGGTGGGTGAAACTATCTACTGGGGAGTATAGATTTCTTGT
TCTGGCTGGCTTTATATCCCATTCCCCTGGCTTTGGCTCCCATTC
Right flanking sequence: Indices 390641 -- 391140
TATACTTTAGCCCGGCTGGCTTGCTTCACCTTCCCGAGTGAGGTAAGTTAGTGGCTCGTTCCTGA
CTGCGGACTGCTTACTTACACATTCCTAGAACGTTGCCTTACACGTTTCCTGGCTCACCCTCTTC
CACGTTCTTACTTCCAACCTCTTCCAACCTAACCCTATTACTTTTACGTTACCTGGATGGTGATA
TTTACCATAATACCCCGGAGAACGGTCCTGCCCATCGTGACTCGGATGGCGGGATTTCCCAGTAT
TACCCAGCGAGACTTCCCAGCGCTCCCTAGATACCGGGCCTTCCCACTGTGAATCGGATGGTGGT
TCTGCCCATTGTGAGGAAGATGGCGGGATTTCCCAGTATTATCCGGCTGTCTTTCCCATTGTTCC
CCGGATTGATTGATCGAGCAATGGATCGAGTTATGGATTGATTGAGGGCTGGCGGGGATAAAGCT
GCTGGTGGGTACTTGGAATGTTTATAGAGAGGAGTTAAGGGGGTG
Found at i:390643 original size:15 final size:16
Alignment explanation
Indices: 390604--390645 Score: 50
Period size: 19 Copynumber: 2.5 Consensus size: 16
390594 TCGGATGGCA
390604 GGCTATACCTCGGATGG
1 GGCTATACCTCGGAT-G
390621 CAGGCTATACCTCGGAT-
1 --GGCTATACCTCGGATG
390638 GGCTATAC
1 GGCTATAC
390646 TTTAGCCCGG
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
15 8 0.35
19 15 0.65
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (16 bp):
GGCTATACCTCGGATG
Left flanking sequence: Indices 390104 -- 390603
GACAGGAGTCCTTGCCGATCTAAGTGTCTTTCGTGCAAGGAAATGGTGGGATACTACACCTACCT
CTATTGAGACTGGCTAGTGGCTTACCAGATTGAGGAGAAATCAAATATTCTTGTCTGTCTGGTGG
GAAATGTCAGAAAGAAAGTAGTCTAGTGTACATGAAACTTATTAATGCAATGAATGAAAGTTACC
ATGGATTTCACATAACATCGAAAAAAGGAGGGGAGTTCCACTCCACCACACGTAGTCGGGAGTAG
AAATCTTCTGACAGCAGGGTTGCAGGTATTATTCTAAACAAATGATATCCTGGCTGGCTTTCCTA
AGTGGGTGAAACTATATACTGGATAGAATCTATTTATTCTATACTGGTTAGCTCTTGGGGGTTAA
CCTATTGGATAGGGGTGGGTGAAACTATCTACTGGGGAGTATAGATTTCTTGTTCTGGCTGGCTT
TATATCCCATTCCCCTGGCTTTGGCTCCCATTCCCTCGGATGGCA
Right flanking sequence: Indices 390646 -- 391145
TTTAGCCCGGCTGGCTTGCTTCACCTTCCCGAGTGAGGTAAGTTAGTGGCTCGTTCCTGACTGCG
GACTGCTTACTTACACATTCCTAGAACGTTGCCTTACACGTTTCCTGGCTCACCCTCTTCCACGT
TCTTACTTCCAACCTCTTCCAACCTAACCCTATTACTTTTACGTTACCTGGATGGTGATATTTAC
CATAATACCCCGGAGAACGGTCCTGCCCATCGTGACTCGGATGGCGGGATTTCCCAGTATTACCC
AGCGAGACTTCCCAGCGCTCCCTAGATACCGGGCCTTCCCACTGTGAATCGGATGGTGGTTCTGC
CCATTGTGAGGAAGATGGCGGGATTTCCCAGTATTATCCGGCTGTCTTTCCCATTGTTCCCCGGA
TTGATTGATCGAGCAATGGATCGAGTTATGGATTGATTGAGGGCTGGCGGGGATAAAGCTGCTGG
TGGGTACTTGGAATGTTTATAGAGAGGAGTTAAGGGGGTGCTACC
Found at i:392428 original size:15 final size:15
Alignment explanation
Indices: 392408--392436 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
392398 CCTTGTCTTA
392408 AGCAGGGGAGAAATT
1 AGCAGGGGAGAAATT
392423 AGCAGGGGAGAAAT
1 AGCAGGGGAGAAAT
392437 CGTTTCAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.41, C:0.07, G:0.41, T:0.10
Consensus pattern (15 bp):
AGCAGGGGAGAAATT
Left flanking sequence: Indices 391908 -- 392407
GGTATGATTGAACGGGTTCCTTGCCAATTGCATAGTCAAACTCTCTATAGCGTATGGCGGGTATA
CTCACTTCTTGGTGGACCTTGGCAGGTATCTTTACTTAGTGGACTTGGGCTTGTATTTTGTGACT
GGTGATGGCTGAAGGTGAAAGGCTAAGGCCCTAGGTGAAAGGCCCTCGGTGGACTTGATGTTGAA
GGCAGAAGGTTGGGTTTTTCTGGGCTGGTGGTCTAGGCTTCTGGCTTAAGGCTCCTTACTCGTGT
GGCTCTTGGTTGTTCGATAAAGACCTAGGGACGTTCACCTCAAGCACACAGTGGAACCTGAAGAG
AGAGGTTCGTAACACAGCGAATCCACGGTTAGTTACACCTGATTCAGTTCCACACCTAACTGCTT
GCTGATCGATATCTCTTGTGCCTTACTGATATATCGATTGATACCCGCCGGATCTCTCTTTCGAC
CTTACAACGATGAACTTCATGGGGCTGGCTTCCTTCCTTGTCTTA
Right flanking sequence: Indices 392437 -- 392936
CGTTTCAATTGGCAGTAAGTGAAACTCCTATTATCTACTGAGCTAAGTCAGGTAAGCTAAGTCTA
GAAGTATAAGTGGAGATTTTATACCCCAGCCACTACTACTTAAGACTAATAGGAAAGGGAGCAGA
CAGGGGCTCAGAACACTGATGGAAGTCCAGGGAGGGTAAGTCGGTTCATTCTCTCTCGTCTGGTG
GGAACGATGGGAAACATAGAAGCCATTCACTGCATGCCCCTAGCCCCACCACCACGATCTAGTAA
ACTCACTCTAGCAACACACGACTAGTAAACTCACTCTAGCAACACGTCTAGCCATCCTATTGTAG
GTGGCGCATGGGGGAAAATATCCTATCTCGGGTATGATAATTTCCTCTCCTTATCAGTCGAGCCC
CCTGTCGGGTCCTTGCACTAGGAAGCGCAAGACCCTCCGGACCTTCTCTTTCTTCCTTTACTAGG
AATAGCTGTCCGAACCAGCATGACTAATCTTCCTTACTAGTAGTC
Found at i:392725 original size:28 final size:29
Alignment explanation
Indices: 392684--392741 Score: 109
Period size: 28 Copynumber: 2.0 Consensus size: 29
392674 GCCCCACCAC
392684 CACGATCTAGTAAACTCACTCTAGCAACA
1 CACGATCTAGTAAACTCACTCTAGCAACA
392713 CACGA-CTAGTAAACTCACTCTAGCAACA
1 CACGATCTAGTAAACTCACTCTAGCAACA
392741 C
1 C
392742 GTCTAGCCAT
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
28 24 0.83
29 5 0.17
ACGTcount: A:0.38, C:0.33, G:0.10, T:0.19
Consensus pattern (29 bp):
CACGATCTAGTAAACTCACTCTAGCAACA
Left flanking sequence: Indices 392184 -- 392683
ATAAAGACCTAGGGACGTTCACCTCAAGCACACAGTGGAACCTGAAGAGAGAGGTTCGTAACACA
GCGAATCCACGGTTAGTTACACCTGATTCAGTTCCACACCTAACTGCTTGCTGATCGATATCTCT
TGTGCCTTACTGATATATCGATTGATACCCGCCGGATCTCTCTTTCGACCTTACAACGATGAACT
TCATGGGGCTGGCTTCCTTCCTTGTCTTAAGCAGGGGAGAAATTAGCAGGGGAGAAATCGTTTCA
ATTGGCAGTAAGTGAAACTCCTATTATCTACTGAGCTAAGTCAGGTAAGCTAAGTCTAGAAGTAT
AAGTGGAGATTTTATACCCCAGCCACTACTACTTAAGACTAATAGGAAAGGGAGCAGACAGGGGC
TCAGAACACTGATGGAAGTCCAGGGAGGGTAAGTCGGTTCATTCTCTCTCGTCTGGTGGGAACGA
TGGGAAACATAGAAGCCATTCACTGCATGCCCCTAGCCCCACCAC
Right flanking sequence: Indices 392742 -- 393241
GTCTAGCCATCCTATTGTAGGTGGCGCATGGGGGAAAATATCCTATCTCGGGTATGATAATTTCC
TCTCCTTATCAGTCGAGCCCCCTGTCGGGTCCTTGCACTAGGAAGCGCAAGACCCTCCGGACCTT
CTCTTTCTTCCTTTACTAGGAATAGCTGTCCGAACCAGCATGACTAATCTTCCTTACTAGTAGTC
AAATTATGATGCGTCTTTTATTTTAAGACACAACTAATTCAGAGCTTGTCCTTCGGGACGGACTC
TCTTTCAGATCCTAACTTTTGTGAAGCTTAGGTGAGGAGGAACAATCTTAGTCCGAGGAGCGAAG
GTACCCCGCCTAAAGGGGCATACGAGTCAGGGGAGGAATGCGGCAACATTGATCCGACTGCCCGA
CGACGGAGTGAGACTATAATAAAACGGCAATAACGGGTTCAGGCAGGCAACTTAGTATTCAGACA
AGCCTTCGCGGCTTTCTCTTAATTAGGCCGTTACACGAGTGGCTT
Found at i:392735 original size:14 final size:14
Alignment explanation
Indices: 392689--392735 Score: 51
Period size: 14 Copynumber: 3.4 Consensus size: 14
392679 ACCACCACGA
392689 TCTAGTAAACTCAC
1 TCTAGTAAACTCAC
* *
392703 TCTAG-CAACACAC
1 TCTAGTAAACTCAC
*
392716 GACTAGTAAACTCAC
1 -TCTAGTAAACTCAC
392731 TCTAG
1 TCTAG
392736 CAACACGTCT
Statistics
Matches: 25, Mismatches: 6, Indels: 4
0.71 0.17 0.11
Matches are distributed among these distances:
13 6 0.24
14 13 0.52
15 6 0.24
ACGTcount: A:0.36, C:0.30, G:0.11, T:0.23
Consensus pattern (14 bp):
TCTAGTAAACTCAC
Left flanking sequence: Indices 392189 -- 392688
GACCTAGGGACGTTCACCTCAAGCACACAGTGGAACCTGAAGAGAGAGGTTCGTAACACAGCGAA
TCCACGGTTAGTTACACCTGATTCAGTTCCACACCTAACTGCTTGCTGATCGATATCTCTTGTGC
CTTACTGATATATCGATTGATACCCGCCGGATCTCTCTTTCGACCTTACAACGATGAACTTCATG
GGGCTGGCTTCCTTCCTTGTCTTAAGCAGGGGAGAAATTAGCAGGGGAGAAATCGTTTCAATTGG
CAGTAAGTGAAACTCCTATTATCTACTGAGCTAAGTCAGGTAAGCTAAGTCTAGAAGTATAAGTG
GAGATTTTATACCCCAGCCACTACTACTTAAGACTAATAGGAAAGGGAGCAGACAGGGGCTCAGA
ACACTGATGGAAGTCCAGGGAGGGTAAGTCGGTTCATTCTCTCTCGTCTGGTGGGAACGATGGGA
AACATAGAAGCCATTCACTGCATGCCCCTAGCCCCACCACCACGA
Right flanking sequence: Indices 392736 -- 393235
CAACACGTCTAGCCATCCTATTGTAGGTGGCGCATGGGGGAAAATATCCTATCTCGGGTATGATA
ATTTCCTCTCCTTATCAGTCGAGCCCCCTGTCGGGTCCTTGCACTAGGAAGCGCAAGACCCTCCG
GACCTTCTCTTTCTTCCTTTACTAGGAATAGCTGTCCGAACCAGCATGACTAATCTTCCTTACTA
GTAGTCAAATTATGATGCGTCTTTTATTTTAAGACACAACTAATTCAGAGCTTGTCCTTCGGGAC
GGACTCTCTTTCAGATCCTAACTTTTGTGAAGCTTAGGTGAGGAGGAACAATCTTAGTCCGAGGA
GCGAAGGTACCCCGCCTAAAGGGGCATACGAGTCAGGGGAGGAATGCGGCAACATTGATCCGACT
GCCCGACGACGGAGTGAGACTATAATAAAACGGCAATAACGGGTTCAGGCAGGCAACTTAGTATT
CAGACAAGCCTTCGCGGCTTTCTCTTAATTAGGCCGTTACACGAG
Found at i:396965 original size:19 final size:19
Alignment explanation
Indices: 396917--396965 Score: 53
Period size: 19 Copynumber: 2.6 Consensus size: 19
396907 GATAGCCGTG
*
396917 ACTCACCGGAATCATGAGC
1 ACTCACCGGAATCAGGAGC
* ***
396936 ACGCGTAGGAATCAGGAGC
1 ACTCACCGGAATCAGGAGC
396955 ACTCACCGGAA
1 ACTCACCGGAA
396966 GCGGTACACC
Statistics
Matches: 21, Mismatches: 9, Indels: 0
0.70 0.30 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.33, C:0.29, G:0.27, T:0.12
Consensus pattern (19 bp):
ACTCACCGGAATCAGGAGC
Left flanking sequence: Indices 396417 -- 396916
GAAGAAGCAGCAGTTAGCTCTAACACGGGACTGAAGTCACTTCAGGGGTTAGCTCTGCAAATGTT
GAAAGAATAACGGCAGCTAATTCATCCGCATCTGTTGGAGGAATGGTGGAAGGGATCGATCCCAT
ATCCGGTGAAAGGCCAAGGCAATAAAGAAGAAAGACCAGGCGCAGGGCCAAAGGCAGCATAGTAC
AGAAAAGAGATTCCTGATTCAAGTCTTGGAGGAAGGGCGGCTACTTCTTTCTACTCTCGAGTTAC
TGGCTTTCCTTGCACTAGGAAGCGCAAGCCCCTCCGGGACCTTACCAAGTGCCATCATTTGAGGG
GAACAAACAGAGAAGTAATGATAGGAGCGGTATCAGAGCCGTAATCAGAGCCGGTAGCAGTCGCA
AGCCAGTAGCAGTAGCTAGTCAGTTCCTCTAGAAGCATAAGAGGATTGACTCAATAGATTGACTC
ACTATATAGACTCACCGGGCGGTGACTCACTGGAAGATAGCCGTG
Right flanking sequence: Indices 396966 -- 397465
GCGGTACACCGGAATTGACTAGGAGCAGTGAACTAGCCATGAGTAGGAGCAGTAGCAATGACTAG
GAGCAGTGAACTAGCCATGTCCACTAGCAATGAGAGCTGTGACTAGCCATGAATGAGTAGGAGCA
GTAGCCAGCGAGTAGCAGTAGCAGAGCCATTAGCAGAGCGAGTAGCCTGAAATTGGTCGTGGACT
TTCCCTTCGATCAGACGCTAGGAGATCGAGATACGAACCCGCTCGCCAAAGAAGGGCGAGGGGAT
ACTTCGATCGGTACCGCCCCGTCTCCATCCAGTCAGACAAGGTTGAGCCATCCAGCCAGACCCAT
TTTGGTTTTTAGGGCGACCTTCTTGCGAACTTCCGGCAATCAACTTCGTATTTGTTGGTTGGAGG
TCGACGGCGTATCAGGAACGATAGGATGAGGCAAGCTTAGGAACGGTGGTGGGATACCCCGAAGA
TAGCAAATTACACTATTCACCATTACTGCTTCCCTTTAGACTGTT
Found at i:397017 original size:24 final size:24
Alignment explanation
Indices: 396981--397049 Score: 85
Period size: 24 Copynumber: 3.1 Consensus size: 24
396971 ACACCGGAAT
396981 TGACTAGGAGCAGTGAACTAGCCA
1 TGACTAGGAGCAGTGAACTAGCCA
* *
397005 TGAGTAGGAGCA--G---TAGCAA
1 TGACTAGGAGCAGTGAACTAGCCA
397024 TGACTAGGAGCAGTGAACTAGCCA
1 TGACTAGGAGCAGTGAACTAGCCA
397048 TG
1 TG
397050 TCCACTAGCA
Statistics
Matches: 36, Mismatches: 4, Indels: 10
0.72 0.08 0.20
Matches are distributed among these distances:
19 16 0.44
21 1 0.03
22 1 0.03
24 18 0.50
ACGTcount: A:0.33, C:0.17, G:0.32, T:0.17
Consensus pattern (24 bp):
TGACTAGGAGCAGTGAACTAGCCA
Left flanking sequence: Indices 396481 -- 396980
TGAAAGAATAACGGCAGCTAATTCATCCGCATCTGTTGGAGGAATGGTGGAAGGGATCGATCCCA
TATCCGGTGAAAGGCCAAGGCAATAAAGAAGAAAGACCAGGCGCAGGGCCAAAGGCAGCATAGTA
CAGAAAAGAGATTCCTGATTCAAGTCTTGGAGGAAGGGCGGCTACTTCTTTCTACTCTCGAGTTA
CTGGCTTTCCTTGCACTAGGAAGCGCAAGCCCCTCCGGGACCTTACCAAGTGCCATCATTTGAGG
GGAACAAACAGAGAAGTAATGATAGGAGCGGTATCAGAGCCGTAATCAGAGCCGGTAGCAGTCGC
AAGCCAGTAGCAGTAGCTAGTCAGTTCCTCTAGAAGCATAAGAGGATTGACTCAATAGATTGACT
CACTATATAGACTCACCGGGCGGTGACTCACTGGAAGATAGCCGTGACTCACCGGAATCATGAGC
ACGCGTAGGAATCAGGAGCACTCACCGGAAGCGGTACACCGGAAT
Right flanking sequence: Indices 397050 -- 397549
TCCACTAGCAATGAGAGCTGTGACTAGCCATGAATGAGTAGGAGCAGTAGCCAGCGAGTAGCAGT
AGCAGAGCCATTAGCAGAGCGAGTAGCCTGAAATTGGTCGTGGACTTTCCCTTCGATCAGACGCT
AGGAGATCGAGATACGAACCCGCTCGCCAAAGAAGGGCGAGGGGATACTTCGATCGGTACCGCCC
CGTCTCCATCCAGTCAGACAAGGTTGAGCCATCCAGCCAGACCCATTTTGGTTTTTAGGGCGACC
TTCTTGCGAACTTCCGGCAATCAACTTCGTATTTGTTGGTTGGAGGTCGACGGCGTATCAGGAAC
GATAGGATGAGGCAAGCTTAGGAACGGTGGTGGGATACCCCGAAGATAGCAAATTACACTATTCA
CCATTACTGCTTCCCTTTAGACTGTTTTGGGGTGCCCGAGGTTGCCCCTTCTGTAGGGGGCCGGG
AATACCTTCTCCGTTTTGTTACCGGATCGTAGGTATAGGGCACGC
Found at i:397026 original size:19 final size:19
Alignment explanation
Indices: 396999--397037 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
396989 AGCAGTGAAC
* *
396999 TAGCCATGAGTAGGAGCAG
1 TAGCAATGACTAGGAGCAG
397018 TAGCAATGACTAGGAGCAG
1 TAGCAATGACTAGGAGCAG
397037 T
1 T
397038 GAACTAGCCA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.33, C:0.15, G:0.33, T:0.18
Consensus pattern (19 bp):
TAGCAATGACTAGGAGCAG
Left flanking sequence: Indices 396499 -- 396998
TAATTCATCCGCATCTGTTGGAGGAATGGTGGAAGGGATCGATCCCATATCCGGTGAAAGGCCAA
GGCAATAAAGAAGAAAGACCAGGCGCAGGGCCAAAGGCAGCATAGTACAGAAAAGAGATTCCTGA
TTCAAGTCTTGGAGGAAGGGCGGCTACTTCTTTCTACTCTCGAGTTACTGGCTTTCCTTGCACTA
GGAAGCGCAAGCCCCTCCGGGACCTTACCAAGTGCCATCATTTGAGGGGAACAAACAGAGAAGTA
ATGATAGGAGCGGTATCAGAGCCGTAATCAGAGCCGGTAGCAGTCGCAAGCCAGTAGCAGTAGCT
AGTCAGTTCCTCTAGAAGCATAAGAGGATTGACTCAATAGATTGACTCACTATATAGACTCACCG
GGCGGTGACTCACTGGAAGATAGCCGTGACTCACCGGAATCATGAGCACGCGTAGGAATCAGGAG
CACTCACCGGAAGCGGTACACCGGAATTGACTAGGAGCAGTGAAC
Right flanking sequence: Indices 397038 -- 397537
GAACTAGCCATGTCCACTAGCAATGAGAGCTGTGACTAGCCATGAATGAGTAGGAGCAGTAGCCA
GCGAGTAGCAGTAGCAGAGCCATTAGCAGAGCGAGTAGCCTGAAATTGGTCGTGGACTTTCCCTT
CGATCAGACGCTAGGAGATCGAGATACGAACCCGCTCGCCAAAGAAGGGCGAGGGGATACTTCGA
TCGGTACCGCCCCGTCTCCATCCAGTCAGACAAGGTTGAGCCATCCAGCCAGACCCATTTTGGTT
TTTAGGGCGACCTTCTTGCGAACTTCCGGCAATCAACTTCGTATTTGTTGGTTGGAGGTCGACGG
CGTATCAGGAACGATAGGATGAGGCAAGCTTAGGAACGGTGGTGGGATACCCCGAAGATAGCAAA
TTACACTATTCACCATTACTGCTTCCCTTTAGACTGTTTTGGGGTGCCCGAGGTTGCCCCTTCTG
TAGGGGGCCGGGAATACCTTCTCCGTTTTGTTACCGGATCGTAGG
Found at i:398116 original size:36 final size:36
Alignment explanation
Indices: 398076--398148 Score: 146
Period size: 36 Copynumber: 2.0 Consensus size: 36
398066 CGTTACCTCA
398076 CCCTGCCGGGGGCATGATGGCGGCCCGTTGGTCGAG
1 CCCTGCCGGGGGCATGATGGCGGCCCGTTGGTCGAG
398112 CCCTGCCGGGGGCATGATGGCGGCCCGTTGGTCGAG
1 CCCTGCCGGGGGCATGATGGCGGCCCGTTGGTCGAG
398148 C
1 C
398149 GGCCTATATG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.08, C:0.32, G:0.44, T:0.16
Consensus pattern (36 bp):
CCCTGCCGGGGGCATGATGGCGGCCCGTTGGTCGAG
Left flanking sequence: Indices 397576 -- 398075
GGGCTTTTAGGCTTTCGATCGGGGGAACGGGTTTCGCCATCATGGTTAGCGGTGGATATATTCAT
TCCCAATATGACGAGATCATATTGAGTCAAAGTTCTTCTGCGAGGAAGATTGAGGGGCTTCATCT
GTCCAGCCATAGTAATAGTAGTTAGGAGAGCGGGAAGGCCCGATCTAGGTTCTGTTCTCCCCAAG
TTCGCGTCCTACCACAGGCTACTGCACGCTGTATAGCCACTCCTAACTTGCCTAATGAATAGGTC
TCAGTTAAGCTATGCATTCATGACTGGAAGAAACGAATGGCAGAAGTGAGCGAAATCGATCTATC
ATTCATGGCATAATGACATATATAATATATGCATTGTCATCGGTCGAGTCCCTCACCTTTCTTAG
GTCAGGTGAGCAAGAAATCCCTCACACATATGAATGTATGAGTCGATGGCGGCCTTGTGTCGAGA
GTTCGTTACCTCACCCTACCGGGCCTCTCCTCACACGTTACCTCA
Right flanking sequence: Indices 398149 -- 398648
GGCCTATATGAATAGTGAGTCCCTACCGGGCCTAAGGTCGAGCGATGGCGGCCTTTTAGTCAAGC
CATCTTGATCTCTCCAAACCTAACGTGATGGTTAGTTTACCATCATGAGGCTCTCTATCTATCAA
CCCGGACAGCCGGCAGATTCGCTCTGTGCGAGCCAGAGTAAGCCCCTACCTAGACTCCCCGTAAT
ATCGTATACAAATAGATCTCATTATATATGTCATTATGCATTTCTTCCCCTCAACCCTGGGCGAG
CCCTGCTGCCCGATCCTCGGTCTGTCGTCCTCCTCATTATAGTCGATCCGCTTCATTTGCCTATC
GTCGCCACATATTTCTGATCTAGAAACACTAATTTCTCTCGTCTCGTTGGGGTCTGTTCACACCA
TATTTCCATATTACCTCAGATAGGGGGGGGAAGTCATTTACGACGGCTTTTTCTGGGCTTTTCTT
TGAGCTCAAAAAACTCCTGGTCGTTTTTCATGAGTTTATACGATT
Found at i:404093 original size:26 final size:26
Alignment explanation
Indices: 404057--404106 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
404047 GACGACGAAT
404057 CCCTCACCATATGAATAGTGAGTGAC
1 CCCTCACCATATGAATAGTGAGTGAC
404083 CCCTCACCATATGAATAGTGAGTG
1 CCCTCACCATATGAATAGTGAGTG
404107 GCTCCGCCCC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.26, G:0.20, T:0.24
Consensus pattern (26 bp):
CCCTCACCATATGAATAGTGAGTGAC
Left flanking sequence: Indices 403557 -- 404056
CGCTAAGGTGAGGCTTTACCATTGAAGGATTCACCTGATCAGCTATTGAACCAACAGATCGATGA
GCCGATCCCAACCAGTTAATGAAAACCCAAATTCATCCAGATCTGTCAAAATTGAGAAATAAAGA
GATGCAGGCGTTATTGTGGTGCGAGGGCAGGGCCGCCGGGGCATACCGATGCGCACGCAGGGAAG
GAAAGAGGAGCGGGCGGCACACCAGAAGCAGCCCGAACTACTGAATAAAAGAAATAGGTAGGGGG
GGGATCTCTTCTTCTGAGCGGTGGGTGGGATCTCTCGATACATCCGAGGAGAGGGTAAGGAGATT
GGACACGGGAGGAGCTCGCCCCCCCTTCCGATCCGTCCGATATGGAGAGGAAACAAAATCGGGCT
TTGGCCTCCCTGCTGGCCGGGCCCCCCTTCAAAGGAAGGGGGTGGGGGGAAGGGTGTCCGGAATC
TGCCTCAAGGGAGAACCTTCGCAGAGCTCAGGCAGGACGACGAAT
Right flanking sequence: Indices 404107 -- 404606
GCTCCGCCCCTCTCCTCTCCCTCTCCCTTAAGGTCGAGCACCTAAAGGTCCTTATGGTCGAGCAC
CTAAAGGTCCTGGACAGTCGAGTGTGCTTACGCACCCTCACCATATGAATAGTGAGTGGCTCCGC
CCCTAAGTAAGAAATATAGGGCCCTGTTTTATTGAAACCGTTACGGCAAGATCGGCAGTGACAGA
ATTGGTGTGTGTAGGTTGGTTATGAACTAAGCATAGCGTAACTGTCACGAGGAAGGGGCACTATA
GACCGGAAAGGGAGAACCTTCACGCTTCTATTTCTTCCCCTCAATCGCATAGCTCAGTAAGGCTT
TTAGGGGAAGAAAGAAAGGCCTTTCTTCCCGAACTCTAGCTCAGGTAATTAAGGACCTACCCGCC
CGCCCGTGGAATCTCTCGCAGAGGACCGGACCAACCCTCTATTCCCGGCCGGTAAGAGAGCGTAA
GGTTATTACTCATATTGATTTCCCTCAAAGAGCATAGCGTAAGGG
Found at i:404165 original size:24 final size:24
Alignment explanation
Indices: 404132--404182 Score: 93
Period size: 24 Copynumber: 2.1 Consensus size: 24
404122 TCTCCCTCTC
404132 CCTTAAGGTCGAGCACCTAAAGGT
1 CCTTAAGGTCGAGCACCTAAAGGT
*
404156 CCTTATGGTCGAGCACCTAAAGGT
1 CCTTAAGGTCGAGCACCTAAAGGT
404180 CCT
1 CCT
404183 GGACAGTCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (24 bp):
CCTTAAGGTCGAGCACCTAAAGGT
Left flanking sequence: Indices 403632 -- 404131
ACCAGTTAATGAAAACCCAAATTCATCCAGATCTGTCAAAATTGAGAAATAAAGAGATGCAGGCG
TTATTGTGGTGCGAGGGCAGGGCCGCCGGGGCATACCGATGCGCACGCAGGGAAGGAAAGAGGAG
CGGGCGGCACACCAGAAGCAGCCCGAACTACTGAATAAAAGAAATAGGTAGGGGGGGGATCTCTT
CTTCTGAGCGGTGGGTGGGATCTCTCGATACATCCGAGGAGAGGGTAAGGAGATTGGACACGGGA
GGAGCTCGCCCCCCCTTCCGATCCGTCCGATATGGAGAGGAAACAAAATCGGGCTTTGGCCTCCC
TGCTGGCCGGGCCCCCCTTCAAAGGAAGGGGGTGGGGGGAAGGGTGTCCGGAATCTGCCTCAAGG
GAGAACCTTCGCAGAGCTCAGGCAGGACGACGAATCCCTCACCATATGAATAGTGAGTGACCCCT
CACCATATGAATAGTGAGTGGCTCCGCCCCTCTCCTCTCCCTCTC
Right flanking sequence: Indices 404183 -- 404682
GGACAGTCGAGTGTGCTTACGCACCCTCACCATATGAATAGTGAGTGGCTCCGCCCCTAAGTAAG
AAATATAGGGCCCTGTTTTATTGAAACCGTTACGGCAAGATCGGCAGTGACAGAATTGGTGTGTG
TAGGTTGGTTATGAACTAAGCATAGCGTAACTGTCACGAGGAAGGGGCACTATAGACCGGAAAGG
GAGAACCTTCACGCTTCTATTTCTTCCCCTCAATCGCATAGCTCAGTAAGGCTTTTAGGGGAAGA
AAGAAAGGCCTTTCTTCCCGAACTCTAGCTCAGGTAATTAAGGACCTACCCGCCCGCCCGTGGAA
TCTCTCGCAGAGGACCGGACCAACCCTCTATTCCCGGCCGGTAAGAGAGCGTAAGGTTATTACTC
ATATTGATTTCCCTCAAAGAGCATAGCGTAAGGGATAACCTTACCTTCCTTCCTTATAGCTCAGG
TCCCGCTTCTATTTCTTCCCCTAAAAGCCTGAGTTAGCTTCGCTA
Found at i:405657 original size:24 final size:24
Alignment explanation
Indices: 405625--405675 Score: 93
Period size: 24 Copynumber: 2.1 Consensus size: 24
405615 GCTTGCTGCA
405625 GCTGGTTAGCTCGTTGGGGACCTT
1 GCTGGTTAGCTCGTTGGGGACCTT
*
405649 GCTGGTTAGCTCGTTGGGGAGCTT
1 GCTGGTTAGCTCGTTGGGGACCTT
405673 GCT
1 GCT
405676 TGCTAGACCT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.08, C:0.20, G:0.39, T:0.33
Consensus pattern (24 bp):
GCTGGTTAGCTCGTTGGGGACCTT
Left flanking sequence: Indices 405125 -- 405624
GTTCAAAGAGAGGGCCTTCCTGCTCAGATGTACCCGGGCCCTGTACACACCGCCCGTCACACCCT
GGGAGTTGATTTCGCCCGAAGCATCAGACCAATGATCACCCTATCTATATATGTTCCACTAGTGT
GGCCCACTATGGTTGGGGTGGTCTTATTGGCGCATACCACGGTGGGGTTTTCTTCCTCTCCCCTT
GGTCGAGCGGCCTTACGGCACCTAAAGAAGTTCAAAAAGAAGGAGCGTAGCGAGATCCCAATCCA
TTAATCGATATCACGTTGATGCAAGATATAACGTATAAAATAGCTATATTCAAAGTGAAAGTATA
CAGGAGCGGAGCCCTCGATATTAAGGCATCGGGTGGAGGGGCTGGCACCCTTCACTCCACAATCC
TGGTTATTGCTTGCTTGCTGGCGGGCGGGTGGGCTGGTCGAGAGAAATCGAGGGCTGGGAGATGA
AATAAAACAAACGGGATAGGCTTGGCTTTCTGCTAGCTTGCTGCA
Right flanking sequence: Indices 405676 -- 406175
TGCTAGACCTAACCGAGGCTGGTCGATCTAATCTGAGGCTGGTTGAACACAGCTGCTTGCCGGTT
GACTCACCGAGGGCTGCTTGAATACGTGAGGCAAGAACTTACGCTAGAACGCTTGGCTATACAAG
TTACACCCGATGATGACTATGCTCAGATCGACAAGAAAGAGCAGAGCACCAATTGATTTCTTTAT
AGATCGACTACCTCGTTTGGAGCAGGCACAAAGTCTCGGTATAAAATATTAGATAAAAACTTATA
AAATGATTTGATATAATCAAAAGTGTTTTTTAGGGGGTAGAAGGTCATTGCTCATCGCGATACTA
AAAGTCTATTTTCTTTTTCATGAACCACTCCTTGCCCTCAGAAGCGAAAGACCTCCGGACCTTTT
TATAACGTTTATCCATGGTTGGCGGGATGCAATCATTGGCTTTGAGCTTGAGAGCCTTGATCCTT
GCTGGGCGGCCTTTATGAAAGAACCCAAGAGCTAGTTGAAAACGA
Found at i:407892 original size:13 final size:13
Alignment explanation
Indices: 407874--407907 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
407864 TCGGTTGCTG
407874 GCTGACATCCAAA
1 GCTGACATCCAAA
407887 GCTGACATCCAAA
1 GCTGACATCCAAA
*
407900 GCTAACAT
1 GCTGACAT
407908 ACCCAGGTTC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.38, C:0.29, G:0.15, T:0.18
Consensus pattern (13 bp):
GCTGACATCCAAA
Left flanking sequence: Indices 407374 -- 407873
TCCGGGTTCGATCGCTCCTCTAGCAAGCCAGCAATCCGGCCATCCATGCCGTTTCTTCGACCAGC
CCGCCATCAATTAATCAATCGCAAGCGCGCCCGCCGTTTCATTATTTATTATCCCAGCCGGTTCT
TATCCCAGCCCGTGGTTTCTTGGGCCCGCCCGTTTCGTATCTTCTGCCAGCCCGAGCATCCGGGT
TCGTCTAGCAAGCAAGCAGCAATCCCAGAATCCTAGCTGTGCCATTCCCCTATCCGTTCGAAACG
TTGTGAAGTACCAATCTTCAGTAAATAAAACATCACTTTCAAAGTGAAGTGGGTTCACCCTCACC
CATATGATGGATGAGCTTCCAAATCGATGGCGGCCTTAGCAGTCGAGCCCCTCCGGTCCTCAACC
TGCCTTCATCGACCGAAGACCTGATATCGACCTCAATTGAGACCCGTCGATCTCTTCTTGCTAAC
TGAAAACAATGAACTTGACGGGGATTGCTTGCTGGTCGGTTGCTG
Right flanking sequence: Indices 407908 -- 408407
ACCCAGGTTCCTCATCTCACGATACCCGAAAGAGAGGTATATGATCTGCTCCCGGTTTCTCTGCT
GACCGGTATATTTCGTCAGAGGTGTTGTCTGCGAAGGAAGGTGGACCAATAGAGAGAGTCAAAGT
GCTGATGGATAAGTATCGGAGCTACCAAGCGAAAGTACTTGGTCGGAGATATGCATATAACTTCA
GCAGCGTTCTATCTTTCTTTAATGAAGGAGGGCCTTTTATAAAAAGGGCCTTCCCTTCGATAAAA
GAAAGAAAGATTACCCCCCTTATGCTTCACCGGGGGCCTATACGGTACGGGGGGGGGAAGAACTT
CTATTTTGAAAGGGTACGAAGTCGCTCGACCAACGGGCCGCCATCGGAATTGCTCACCCACGATT
TCGTTCATTTTGTTTGAATCATAATCAGACTTCAATAACTTATCTTCCTTAGCGGATGTTTGAGC
AGGCTCCCCTCTTAAATAGTGGAATTGCTCAATCTTGAAGCATAA
Found at i:425292 original size:25 final size:26
Alignment explanation
Indices: 425263--425311 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
425253 CACCTCCTTT
425263 AGGGG-TCGACTGATAAG-GAGAGGAG
1 AGGGGCTCGACT-ATAAGAGAGAGGAG
425288 AGGGGCTCGACTATAAGAGAGAGG
1 AGGGGCTCGACTATAAGAGAGAGG
425312 GCGACCAACT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
25 10 0.45
26 12 0.55
ACGTcount: A:0.33, C:0.10, G:0.45, T:0.12
Consensus pattern (26 bp):
AGGGGCTCGACTATAAGAGAGAGGAG
Left flanking sequence: Indices 424763 -- 425262
TCACAGTAGATCTACTACTGTAAAGATACATAAAATGATAACTTGTTAAGGTTAGAGAGCCTAGT
TATCTTCCGGGTGATTAGAACTACTTTCCCTAGATATTATGGGAACCTGCCGATAGTTTGTGGTT
TCAAACCTCAAGTATAGTTGGGATAAGGCATGAAGATCCCTGGTGAGAATCAACAACGAGCCGTA
CAACGGGTTGAAGCCAATCTAGTTAAAAAAGGAGATCTCTTCTCAGTTGATGGGCTGACAGGTTA
CACACGTTTTGATCGATAAACACGTTTGAGATTCAGCAACCAGCTAGAGGGCCGTGCTGGATCCA
ACCTGCTTGTGTGCCAAAAAAGGTAAGTCTCTTGCTACTTACGATATAAAACAAAACCTAGGCCC
TTACTTTTAGGGCGGAGCACTCACTATTCGATGGTGAGGACCGGGTAGTGCTCGACTGTCAAGGA
CCCTTAGGGGTGCGTTAGCACGTCGATAATAAGGACACCTCCTTT
Right flanking sequence: Indices 425312 -- 425811
GCGACCAACTCACTACTTCATATGGTAGGGGTGCCACTCACGCTATTATTATGGTGAGGGTGTAG
AAAAACCAATAGGAGGACACAGGTCTCACCTACCTGCCCTCTCTATTGCCGCCTGCTTAGCAAGG
CTAGAGCTAACTGGACTAGTCCAGTACGCGTAAGGTAGTAGATTAGCGTAGGTACCGCCCAGTAC
GCAATGCTTGCTCGCTTAATGAATAAAAAAGGGCGAAGAATTTCTTGCTGCTATACTGACCGGAG
GGATAAATAAAGGAGGGCAGATTAGATTCAGAGGCAAACCGAACCACCGATGCGAACCAGCGTTG
AGGAGCCGTGGACGCTGAGTGTATCGACAAGAGCCACGATTGCATGATTGGATTGATTGGAAGAC
CTGCTGACTGGGGAGCTTAGGAGCCGGCTGTGAGCGGCTGGATGGGGAGCTGGGATGGGAAAGCT
GGGGAGCTTAGGAGCTGGTTAGCTTGCTGGTTTGGTTAGCTTCTA
Found at i:428751 original size:25 final size:27
Alignment explanation
Indices: 428698--428754 Score: 100
Period size: 27 Copynumber: 2.2 Consensus size: 27
428688 GGACCCTTAG
428698 GGGGCTCGACTGATAAGGCAGAGGAGA
1 GGGGCTCGACTGATAAGGCAGAGGAGA
428725 GGGGCTCGACTGAT-AGG-AGAGGAGA
1 GGGGCTCGACTGATAAGGCAGAGGAGA
428750 GGGGC
1 GGGGC
428755 GGAGCCCTCA
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
25 13 0.43
26 3 0.10
27 14 0.47
ACGTcount: A:0.26, C:0.14, G:0.49, T:0.11
Consensus pattern (27 bp):
GGGGCTCGACTGATAAGGCAGAGGAGA
Left flanking sequence: Indices 428198 -- 428697
GTACTATCAAGGTTCAGTCAGGTCGATATCTTCAGGGCCTGGCTCTATGCTCCTTTTTCAATATA
TCAGGGGGGGGCCTGAGCTTTCTCCCTTCTTCATTTGGTTCTATCATTTGTCGGCCTTCGCCCCT
TCCAAAGTGAGGCCACCCTACAAGGCAGGCTGAGCAAGGTTGCGAAGCCGCCGGAGAAGACAATA
GGAGGGGGCAGGGCCCTATTCTGGGCGGAGCCACTCACTATTTCCGATGGTTGAGGGTGCGTTAA
GCCACACTCGACTGCCTTTGGTTACTTATTTGAAGGAGGGGAGAGGGGCGGAAGCACTCACTATT
TATATGGTGTAGGGACCGGTAGGCTCGACTGCGAATGACCCTTATAGGGGGCTCGACTGATAAGG
AGAGGAGAGGAACCGGTTAGGGGGTCACCATTCCGATGGTGAGGACCGGTAGGGGCTCGACTGTC
AGACCTTTAGGGTGCGTAAGGCACGCTGACTAATAGGACCCTTAG
Right flanking sequence: Indices 428755 -- 429254
GGAGCCCTCACTATCATATGGTGAGGGGTCACCTCACATTCATATTGGTGAGGGTGCGTTAGCAA
CACTCGACTGCCTTTGGTTACTTAATTTGAGAGGAGGGAGAGGGATTTCGATCCAGCCGCAGGTT
CCCTACGGCTACCTTGTTACGATTCACCCCAGGTCGAAGACCCCACCGTGGTATGCGCCAATAAG
ACCACCCCAACCTATAGTGGGCCACACTAGTGGAACATATATAGATAGGGTGGATCATTGGTCTG
CATGCTTCGGGCGAAATCACTCCCAGGGTGTGCGGGCGGTGTTTACAGGGCCCGGGTACATATTC
ACCGCGGCATGCTTGATCCGCGGAATTACTAGCGATTCAACTTCATGTTCTCGAGTTGCAGGAAA
AAGAACAAATCCGAACTGAGGCAAATCTTTCCGGATTCGCCTTCCGCCTTTACGGCCTTGCTTTC
CATTGTCATTGCCATGTAGCACGTGTGTGGCCAGCCCTAAGGGCC
Found at i:430868 original size:94 final size:95
Alignment explanation
Indices: 430707--430901 Score: 276
Period size: 94 Copynumber: 2.1 Consensus size: 95
430697 GTGAGGCGAC
*
430707 CCCTCACCATTATGATAGTGAGTGTGCCCTAACGCACCCTCTGCCCCTCCTCTCAAATAAGTAAA
1 CCCTCACCATTATGATAGTGAGTGGGCCCTAACGCACCCTCTGCCCCTCCTCTCAAATAAGTAAA
430772 CCAAAGG-CAG-TCG-AGTGTGCTTTACGCA
66 CCAAAGGCCAGTTCGAAGTGTGC-TTACGCA
**
430800 CCCTCACCCA-TATGAATAGTGAGTGGGTGCTAACGCACCCTCT-CCCCTCCTTCTCAAATAAAG
1 CCCTCA-CCATTATG-ATAGTGAGTGGGCCCTAACGCACCCTCTGCCCCTCC-TCTCAAAT-AAG
430863 T-AACCAAAGGCCAGTTCGAAGTGTGCTTACGCA
62 TAAACCAAAGGCCAGTTCGAAGTGTGCTTACGCA
430896 CCCTCA
1 CCCTCA
430902 ACGACATCGG
Statistics
Matches: 92, Mismatches: 3, Indels: 11
0.87 0.03 0.10
Matches are distributed among these distances:
93 17 0.18
94 45 0.49
95 7 0.08
96 16 0.17
97 7 0.08
ACGTcount: A:0.26, C:0.33, G:0.18, T:0.23
Consensus pattern (95 bp):
CCCTCACCATTATGATAGTGAGTGGGCCCTAACGCACCCTCTGCCCCTCCTCTCAAATAAGTAAA
CCAAAGGCCAGTTCGAAGTGTGCTTACGCA
Left flanking sequence: Indices 430207 -- 430706
CATTGTCCAATATTCCCCACTGCTGCCCCCCGGGGGTTGGGCCGTGTCTCAGTCCCAGTGTGGCT
GATCATCCGAAAAGAACCAGCTAAGCATCAATTGGCTTGGTTCAGCCTTTTACCTAAACCAACTA
CCTGATACTACGTGGGCTCATCGAAACAGCGGAATTAGCTTGCTTTATGATTATTCAGGATTTGG
AGTAACTATTTCGGCAGAATTCCCACCGCGTTACGCACCCGTTCGGCCACTTTGCTTTGCTGTGC
CCCACGCCCAGCGCACCACTTCGTATATCATTGAGTGAGTGAGCACGCGGCTAGGAGGGGGCCAT
TCATCTTGCCCTTCTCCCCCACGGTGGATGGATGGGGAAGCAAGCCACGTTTCGACTTGCATGTG
TTAAAGCATATAGCTTAGCGTTTCGTTCTTGAGCCAGGAGTCAAACTCTTTTTTGAGTATGATCT
ATTTTGAGCATCAATGCCCTCACCCATATGAATGAGTGAGGCGAC
Right flanking sequence: Indices 430902 -- 431401
ACGACATCGGAATAGTGAGTGGCTTCCGCCCCTAAAGAATATAGGGCCTTTCGAAATGCCGCAGC
CTTCATTTCATATATTATATATGTCAATTACGGGTCATGATCCGAATTCATGACGATCTCCCTGT
CCTGAATGAGATAGGTAATTACGGCTTTAGCAGAATCATGCAATATCTTATATATGTCCCATTAT
GCTATTTTGAGAGATCGAATCCAATCTGCTATTATATAATTGAATTAGGCATTTCTTCCAGTATT
CATTAGATATGTAAATGAACCCCAGAAAAATGCATATATTATTATGGTCATTATGCCATGAATGA
ATTATATATGTCATGAACGGGAATTCATTCATTCAATTGATCGATTTCATTTACACCCGAGAAAA
TGCATATATTAGATATGTCCATTATGCATTTATGATATTTTCATTCCTGAAATGCATATATTTAT
ATGTTAATTACTGTGATCTCAGAAATCGATAATCATAATCTCGGT
Found at i:437817 original size:16 final size:16
Alignment explanation
Indices: 437798--437851 Score: 63
Period size: 17 Copynumber: 3.2 Consensus size: 16
437788 TGACCCAAAG
*
437798 GCTGACTGATCACGAA
1 GCTGACTTATCACGAA
*
437814 GCTGGTCTTATCACGAA
1 GCT-GACTTATCACGAA
*
437831 GCTGCCTTATTCACGAA
1 GCTGACTTA-TCACGAA
437848 GCTG
1 GCTG
437852 CCTTTCACAA
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
16 8 0.24
17 25 0.76
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (16 bp):
GCTGACTTATCACGAA
Left flanking sequence: Indices 437298 -- 437797
CAGGTAAGGTCGCCAACAGCCAGGCCCTTAACTACGCCCCCCTTATTTTCTTACGCCTACCTTGA
TAATGATTCATTTGGCCGACGATAAGAAAAAGTATGTATGTTCCACACTGTATCGCCCTATCTAA
CCATCCTCCCCCCCCTTAAGTACCGCCCCCCTTCATATTAGCACGGAAAGAATGTTTCAAGGGCC
CATGGAATAAAAGAAAGATGTCTCTCCCGACCTGACCCTCACCCTGGAAGCTTCCTCGCATTTCC
AATGCTTACCCTGGAATACGCGTCTTAGATTAATAAGAAAAGGTCATGTATATGCCCCACCTCTG
GTCTCCCGCGCCCTCCTTCCTGGTCGTCTCGCCACTTATTAGTCTCCACCCTACTCCAGCTTCGA
GCTTCCTCCCGTTGGAATGCAAATACGCGAATACCACTTATGAAGTTGAATAAGAAAAATATAAC
TGGTGTGGTGGGTTCATTGCCCCTACCTATATACCTGACCCAAAG
Right flanking sequence: Indices 437852 -- 438351
CCTTTCACAAAACGTCATACCTGCTCTGGATCGCCTGAATAAACTAACTACCAATAAGAAATATA
TGCATGTGGTAACCCTAACTCATCTGAAGATGGCTCCAGTGACTGACCGGTAGCCAGCCATGAAA
AGAAAATCCAGTCCTATTAGCCTTTACGAGGAGGGTATGGTGCTATTGTTCTCGTTCCTTACGCT
TCGAATTAAAAGGTAGGCGATCAAAATTCAATCGTGGAAATCGTAGCTTTTCAATCCCCCTTAGC
CATTGGTGTGAAATGTGTTCAATCGGCATTATTCAAATAATAAGAATTGGGACGAATTGCGAAGA
AAGAATTACACCGCCAATTGACAAGTCTCACCCCGTAACCAATTGGAACGAAGAATTACACCGCC
GAATGACAAGTCTCACGCCACGCTAACATTTGCGCCAAGAAGGAGTTACACCCCCCCTTATTGGT
TGGGTTGAATAGGCATCATTTCATTTTACTTATTGGGTGGCCCCT
Found at i:437828 original size:17 final size:17
Alignment explanation
Indices: 437806--437859 Score: 69
Period size: 17 Copynumber: 3.3 Consensus size: 17
437796 AGGCTGACTG
*
437806 ATCACGAAGCTGGTCTT
1 ATCACGAAGCTGGCCTT
437823 ATCACGAAGCT-GCCTT
1 ATCACGAAGCTGGCCTT
437839 ATTCACGAAGCT-GCCTT
1 A-TCACGAAGCTGGCCTT
437856 -TCAC
1 ATCAC
437860 AAAACGTCAT
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
15 4 0.11
16 5 0.14
17 26 0.74
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.28
Consensus pattern (17 bp):
ATCACGAAGCTGGCCTT
Left flanking sequence: Indices 437306 -- 437805
GTCGCCAACAGCCAGGCCCTTAACTACGCCCCCCTTATTTTCTTACGCCTACCTTGATAATGATT
CATTTGGCCGACGATAAGAAAAAGTATGTATGTTCCACACTGTATCGCCCTATCTAACCATCCTC
CCCCCCCTTAAGTACCGCCCCCCTTCATATTAGCACGGAAAGAATGTTTCAAGGGCCCATGGAAT
AAAAGAAAGATGTCTCTCCCGACCTGACCCTCACCCTGGAAGCTTCCTCGCATTTCCAATGCTTA
CCCTGGAATACGCGTCTTAGATTAATAAGAAAAGGTCATGTATATGCCCCACCTCTGGTCTCCCG
CGCCCTCCTTCCTGGTCGTCTCGCCACTTATTAGTCTCCACCCTACTCCAGCTTCGAGCTTCCTC
CCGTTGGAATGCAAATACGCGAATACCACTTATGAAGTTGAATAAGAAAAATATAACTGGTGTGG
TGGGTTCATTGCCCCTACCTATATACCTGACCCAAAGGCTGACTG
Right flanking sequence: Indices 437860 -- 438359
AAAACGTCATACCTGCTCTGGATCGCCTGAATAAACTAACTACCAATAAGAAATATATGCATGTG
GTAACCCTAACTCATCTGAAGATGGCTCCAGTGACTGACCGGTAGCCAGCCATGAAAAGAAAATC
CAGTCCTATTAGCCTTTACGAGGAGGGTATGGTGCTATTGTTCTCGTTCCTTACGCTTCGAATTA
AAAGGTAGGCGATCAAAATTCAATCGTGGAAATCGTAGCTTTTCAATCCCCCTTAGCCATTGGTG
TGAAATGTGTTCAATCGGCATTATTCAAATAATAAGAATTGGGACGAATTGCGAAGAAAGAATTA
CACCGCCAATTGACAAGTCTCACCCCGTAACCAATTGGAACGAAGAATTACACCGCCGAATGACA
AGTCTCACGCCACGCTAACATTTGCGCCAAGAAGGAGTTACACCCCCCCTTATTGGTTGGGTTGA
ATAGGCATCATTTCATTTTACTTATTGGGTGGCCCCTCTCAATAA
Found at i:449047 original size:118 final size:112
Alignment explanation
Indices: 448891--449142 Score: 333
Period size: 118 Copynumber: 2.2 Consensus size: 112
448881 TCGAGCCCTC
448891 TCCTTATTCAGTCGAGTCACT-ACGTACCTCTCCTCTTGGGTTTACTTATT-GCCCCACCCAATA
1 TCCTTA-TCAGTCGAGTCACTAACGTACCTCTCCTCTT-GGTTTACTTATTGGCCCCA-CCAATA
448954 AGTCAACCCTGCGGTCGAG-CACCTAAAGGTC-CTTATCAGTCGCAGCCCCCAAAGG
63 AGTCAACCCT--GGTCGAGCCACCT--A-GTCGCTT-TCAGTCG-AGCCCCCAAAGG
449009 TCCTTATCCAGTCGAGTCACTAACGTACCT-TCCTCTTGGTTTACTTATTGGCCCCACCAATAAG
1 TCCTTAT-CAGTCGAGTCACTAACGTACCTCTCCTCTTGGTTTACTTATTGGCCCCACCAATAAG
*
449073 TCAACCCTGGTCGAGCCACCTAGTCGCTTTCAGTCGAGCCCCTAAAGG
65 TCAACCCTGGTCGAGCCACCTAGTCGCTTTCAGTCGAGCCCCCAAAGG
449121 TCC-TAT-AGTCGAGT-A-TAACGTA
1 TCCTTATCAGTCGAGTCACTAACGTA
449143 AAACCTCTCT
Statistics
Matches: 128, Mismatches: 1, Indels: 21
0.85 0.01 0.14
Matches are distributed among these distances:
107 7 0.05
108 1 0.01
109 8 0.06
111 3 0.02
112 14 0.11
113 10 0.08
114 4 0.03
115 7 0.05
116 5 0.04
117 29 0.23
118 32 0.25
119 8 0.06
ACGTcount: A:0.23, C:0.32, G:0.18, T:0.27
Consensus pattern (112 bp):
TCCTTATCAGTCGAGTCACTAACGTACCTCTCCTCTTGGTTTACTTATTGGCCCCACCAATAAGT
CAACCCTGGTCGAGCCACCTAGTCGCTTTCAGTCGAGCCCCCAAAGG
Left flanking sequence: Indices 448391 -- 448890
TAGTCTCGGTGGTGAACCCGCTGCCCGGGTGTTAAGATGGAAGATGGTGGAGAGCATCACGACTG
TTGAGTGTTTAAAAGCAAACACTGTGCCAGGGCTTTGTTTACCCCAACCTTCAAACAATTTATGA
TTCTGAGTTATTGCCAAGCTGAATTGCGTGCACAGATTGCAGCATAGCAATATGGGGGGTGGAAT
TCGCTCTTCTATCTGTGTGGAGAGGTACCTAGATGCAATCGTTAGACCCCTGCATAAGCATTATA
TCTTTACTTTGTTAGTTTCCAGACCTGCTGATTAGAACAAAAGTGTCAATTCTATACTCCTGGTT
GATGCTGTTTCTCAATCAATGAATGCCACTCCTAGGACCTTCAGCTACCATTGACTTTTTTGTCC
CTACTCCGAGCCGCGATCTTGGCAATTGCCAAAGTACTTGGGGATCCTGAGTTACAATTATTCCA
GGTATCCAACTTTAGCTCAATTTCATCTCCGTGGATCGAGCCCTC
Right flanking sequence: Indices 449143 -- 449642
AAACCTCTCTCTCCTTATTTCAGTCGGCCCCTAAAGGGTCCCTTATCAGTCAGCCCTGACGGACT
CGTGATGCGGTACGGCGGGTGTTTCGGTACTTCTCAAATACCAGTTCCTTTGTCGGGATTCCTTC
CCGTCATATTCTTCTTATTTGAAGCAAGGCTCTTTCTGTGAACCAGGTTCTTATGCAACCAGGCT
ATTCTTTAATTCAGGGCTTTTTTTTCTGTCAACCAGGCTATATGAACCAGGCTAAATACAACTTT
CTATTAGATTCCTTCTCTATATTTCCGACAGGGCTCGCTTCCTCTGTGAACCAGAGGCAATATGA
GAAGGTCCTTAGTGTACTTCCTTTCCGGATTCTATTGTAGCAGGCTCTTTCTTCGGCTTCCAAAT
CTTTTTTAGAGTTCTTCCATAGAGTACAGGCCGAACAGGAAAAGGAGTAGGCTTCTGATCCGCAC
ACTAGCTTTATTGAGATAGGATAATTGTACACAAGTACATATGAA
Found at i:461246 original size:27 final size:26
Alignment explanation
Indices: 461216--461269 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
461206 ACCAGGCAGG
*
461216 GGCTCGACTGTCAAAGGACCTTTAGGT
1 GGCTCGAC-GCCAAAGGACCTTTAGGT
*
461243 GGCTCGACGCCTAAGGACCTTTAGGT
1 GGCTCGACGCCAAAGGACCTTTAGGT
461269 G
1 G
461270 TCGACCTTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 17 0.68
27 8 0.32
ACGTcount: A:0.20, C:0.24, G:0.31, T:0.24
Consensus pattern (26 bp):
GGCTCGACGCCAAAGGACCTTTAGGT
Left flanking sequence: Indices 460716 -- 461215
TAGTTACCACCTATCATACGGCTTTCTAGCTCCACTTTTTCCTCTGGTTGTTCCGCTCCGATCGA
TGGTAGTATCTGCGGTGGGTTGGGTAACGAACCCGGCTTTCAAGACGTTTACGCCTTATGAATAG
GTAGGGGGGGGGGGTGCGGCGGGCGACATACATTTTTGGAACTATGTACCCCATAGTTGGCATGT
AATCCCCCACGCCAGAAGGATATAACCTGAACCATCGTAGACCCCAAACTCTCCTTTCCTTACAG
TGAACCGGAACCATAGTGCATAGATAGATAGGTAATATTCGAAATGGCAGAATAGGCAGGTCGCC
CGCGAGACGACGTGATATAACACGATCACGGTACAGAAGCCACTTGCTGTCGCGATGGAACACTG
CTCCCGTTCCATCGGGCGGCGGGGGGAAGGTAGGCCAAGCTTCCCCGCCACCCGTCGAGGACCTT
TAGTACTCGCTCGATAGGGAAAAAGAGGATCGAGGACCAGGCAGG
Right flanking sequence: Indices 461270 -- 461769
TCGACCTTAAGGGAGAGGGGAGGACCTTTAGGTGCTCGACTGTTAAGGGACCTTTAGGTGACTCA
GACTATAAGAGCGCAAGCAGCTGTGTTTAGGACCTTTAGGGGGCTCGACTGATAAGAGCAGGAAG
GACTTTAGGTGCTCGACTGTTAAGAGAGGAGAGGAATGCGAAGCATGCTCGACTGTTAACCCCCC
AAACCATAAGTAAACCCTAACCTTTAGGTGCTCGACCATAAGGACCTGTTCGGGTTGCTTCTTTA
GGTGCTCGACCCATAGACCTTTAGGTGCTCGACCTTAAGGAGAGGGAGAGGATGCGTAAGCAGGC
TCGACTGATAACCCCCCAAACCAATAAGTAAACCCTAACCTTTAGGTGCTCGACCTTAAGGGATT
TATCGCTCGACCATAAGGGCCGCCATCGCCGCCATCGAGAGGAGAGGAGAGGACCGGTAGGGGCT
CACCATTCCGATGGTGAGGATTTATTCCCCTCTTTGCACGTACAT
Found at i:461416 original size:33 final size:35
Alignment explanation
Indices: 461363--461434 Score: 96
Period size: 33 Copynumber: 2.1 Consensus size: 35
461353 AGCTGTGTTT
461363 AGGACCTTTAGGGGGCTCGACTGATAAGAGCAGGA-
1 AGGACCTTTAGGGGGCTCGACTGATAAGAG-AGGAG
* *
461398 AGGA-CTTTA-GGTGCTCGACTGTTAAGAGAGGAG
1 AGGACCTTTAGGGGGCTCGACTGATAAGAGAGGAG
461431 AGGA
1 AGGA
461435 ATGCGAAGCA
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
32 4 0.12
33 21 0.62
34 5 0.15
35 4 0.12
ACGTcount: A:0.29, C:0.14, G:0.38, T:0.19
Consensus pattern (35 bp):
AGGACCTTTAGGGGGCTCGACTGATAAGAGAGGAG
Left flanking sequence: Indices 460863 -- 461362
GGCGGGCGACATACATTTTTGGAACTATGTACCCCATAGTTGGCATGTAATCCCCCACGCCAGAA
GGATATAACCTGAACCATCGTAGACCCCAAACTCTCCTTTCCTTACAGTGAACCGGAACCATAGT
GCATAGATAGATAGGTAATATTCGAAATGGCAGAATAGGCAGGTCGCCCGCGAGACGACGTGATA
TAACACGATCACGGTACAGAAGCCACTTGCTGTCGCGATGGAACACTGCTCCCGTTCCATCGGGC
GGCGGGGGGAAGGTAGGCCAAGCTTCCCCGCCACCCGTCGAGGACCTTTAGTACTCGCTCGATAG
GGAAAAAGAGGATCGAGGACCAGGCAGGGGCTCGACTGTCAAAGGACCTTTAGGTGGCTCGACGC
CTAAGGACCTTTAGGTGTCGACCTTAAGGGAGAGGGGAGGACCTTTAGGTGCTCGACTGTTAAGG
GACCTTTAGGTGACTCAGACTATAAGAGCGCAAGCAGCTGTGTTT
Right flanking sequence: Indices 461435 -- 461934
ATGCGAAGCATGCTCGACTGTTAACCCCCCAAACCATAAGTAAACCCTAACCTTTAGGTGCTCGA
CCATAAGGACCTGTTCGGGTTGCTTCTTTAGGTGCTCGACCCATAGACCTTTAGGTGCTCGACCT
TAAGGAGAGGGAGAGGATGCGTAAGCAGGCTCGACTGATAACCCCCCAAACCAATAAGTAAACCC
TAACCTTTAGGTGCTCGACCTTAAGGGATTTATCGCTCGACCATAAGGGCCGCCATCGCCGCCAT
CGAGAGGAGAGGAGAGGACCGGTAGGGGCTCACCATTCCGATGGTGAGGATTTATTCCCCTCTTT
GCACGTACATGTGAATCTCGGCTGCCTACCCGGTTCGGATTAACCCGATAACTCTCTCGTATCGA
TTCTTTGTATAATGCAATACAATACCCATGGTTGGTTCGTTGCGGCGTTGGGAAGCATCATGCTA
ATATAACCTCCTATGCGGGGGTGGGTACCTTGGAAGTAAGGTGCT
Found at i:462501 original size:12 final size:12
Alignment explanation
Indices: 462486--462513 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
462476 ACGGATATCT
462486 ATATATATATAG
1 ATATATATATAG
462498 ATATATATATAG
1 ATATATATATAG
462510 ATAT
1 ATAT
462514 CCTTATGTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.07, T:0.43
Consensus pattern (12 bp):
ATATATATATAG
Left flanking sequence: Indices 461986 -- 462485
ATGGCAAGCCGCCTATCGGACTCGGATAGGATCGTGCCTATCAGTCAGTAGCGAGTGTCCGTATG
GGTGGCTTAGTTCCCCGTAGGCAGCGATCCAGAACCCGATGTTACGCGTAATATTGTGTTACGTT
TCATTCACCGCTGTTACGCTCTAAATCCAATCCAAGGGTGGGGTAGGTCAAAATCTGCATGCAAA
GGTAATGCAAATACATAGGCCCCTTCCCCTATTGTTCAGAAGGCGCTTTCCGTTCGTACGGTCGG
AAAGGGTTAGGCAGGTAGGTAGTACGGGCCCTCTGACTTCCGGCTATGTGCTGTGCGGCTTTCGC
GAAGCGGATGAAGGCTGATAGTCTTTCTCGCTATGCGCGTTGGCGCCAAAAATTTGATTCAACGC
AACTCATATTGAGGCTAGCGGCTACGGCTAGGATATCGATCATACCATATCATGCCATATACTTA
GTTAGATATGGAGATGGGCATCTATCTACCTATACACGGATATCT
Right flanking sequence: Indices 462514 -- 463013
CCTTATGTATAACCAGATCCACATGTAATGGATAGGGAGATCTATTCATAGATATATTCAGAAAG
ATATAGATGATCCATATCCATCCGGATACATCGTGGATATGGAATGGATATACATCTATATGCAT
TTTGATTAGCGGGCGGAATGATACCCCTTAATATTGCCGGTCCTTGCACTAGGAAGCGCAAGCCC
TCCGGTCCTTGCTCTCCTTTTGTCGAGCAAGCAATCAATTTCAATTGACTTATTTTGTGCCCCTC
TCAAATAAGTAACTAGCGCTGGTCGAGCCCCTCTCCTTTTAGTTCTTCAAGTCCCTCTCCCGTTG
GTCGAGCCCTCTCCTTATTAGTCGAGCGTTCGTACCTCACCCTGCCGGTCCTTGCCCCGAAACTA
ACCCGCCCGTTATCTGGCGGCTGGGCACGCACAGCGCCCATTGCCCGCATAGCGTTCAAAAGACT
AACGCGCAGCGGAGTGGAGCAGCCGCCGCGGCGACACGAAGGTTC
Found at i:465470 original size:36 final size:36
Alignment explanation
Indices: 465430--465499 Score: 115
Period size: 36 Copynumber: 1.9 Consensus size: 36
465420 TAAACCCTAA
*
465430 CCTTTA-GGTGCTCGACCATAAGGGAGAGGAGAGGAC
1 CCTTTAGGGGGCTCGACCAT-AGGGAGAGGAGAGGAC
465466 CCTTTAGGGGGCTCGACCATAGGGAGAGGAGAGG
1 CCTTTAGGGGGCTCGACCATAGGGAGAGGAGAGG
465500 GAAATCTTGA
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
36 20 0.62
37 12 0.38
ACGTcount: A:0.26, C:0.19, G:0.40, T:0.16
Consensus pattern (36 bp):
CCTTTAGGGGGCTCGACCATAGGGAGAGGAGAGGAC
Left flanking sequence: Indices 464930 -- 465429
ATCTTGGTTGGCCTTTCACCCCTAGCAGCCACGGAGTCATCCCCGTATTTTGCCACATACGCGAT
CAATCCAAATCTCACATCGAATCTGGTATGACACATATCGATGCATTCATTCGTTATATACGTAA
TTACGCTTTAGCATATCATGCATCTATGGGCATATGTCATTATGCAATCGAGATCTCGAACTAAA
TGACATATCTGAGAATATATGCTTTTCATCTCCCTCACTCACATCAACTATGAGCAGGATTGGTT
CATTTCGACCAGTGATTCCAGTCATGAATTATATACGTAATTACGTCATTCGAGATATGTCATTA
TGCATTCATTCATTATATATGTCATTACGCATCAAAACCTCCGCCTCCTCGTGGGGCCTAATTAT
TAGGGTGAGCCCGCCGAACTCTCGACTATAAGGACCTTTAGGTGCTCGACTGTTAAGGATGCGCA
AGCATGCTCGACTGTTAACCCCCCAAACCAATAAGTAAACCCTAA
Right flanking sequence: Indices 465500 -- 465999
GAAATCTTGAAAAACCTCCGCCAAGAGAAAATGGCCCCCTGAGTAGGGGCGGGCTTGGGTGGTGG
GCTTATGGTCGAGCCTTAAAGCGCATCCTCATCAGTCTGGCTAGTTAGATAAGTTCAGTGGGTAT
TTGTATTATTTTGTTTGCCCTGGTGTTATTCTTTAAGGGGGGGAGTTACAGACTGGGGCACCCGA
GGACTACGGGAGACTCAGGATAAGCTTTTCATTCATTTATCAGGCAGGGTTACAGGCAGCACCCC
GAAAGCAGCTTGTCAAGCGAGAAACGGTCCCAGAACGAGCAATGAGCCCGGTTCCAGAACAATAT
ATGGGGGCCCAGAGAGATACAGAGCTGGTCCCAGAAGGTTCAATTTAGAAGACATACGGCTGGTC
CATATGGGACAGGTACACGAGAGCTGGCAGCAGCCACAAACCGGACCGGAACCTTTTACATTGAT
CTAGTGATTTATAAGTAGCATTTATTTCATTAAACAGTTCAGTTA
Found at i:466212 original size:13 final size:13
Alignment explanation
Indices: 466194--466219 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
466184 CGAGCTTAGT
466194 CGAGACTTATATC
1 CGAGACTTATATC
466207 CGAGACTTATATC
1 CGAGACTTATATC
466220 AGTTACGTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.23, G:0.15, T:0.31
Consensus pattern (13 bp):
CGAGACTTATATC
Left flanking sequence: Indices 465694 -- 466193
AGGACTACGGGAGACTCAGGATAAGCTTTTCATTCATTTATCAGGCAGGGTTACAGGCAGCACCC
CGAAAGCAGCTTGTCAAGCGAGAAACGGTCCCAGAACGAGCAATGAGCCCGGTTCCAGAACAATA
TATGGGGGCCCAGAGAGATACAGAGCTGGTCCCAGAAGGTTCAATTTAGAAGACATACGGCTGGT
CCATATGGGACAGGTACACGAGAGCTGGCAGCAGCCACAAACCGGACCGGAACCTTTTACATTGA
TCTAGTGATTTATAAGTAGCATTTATTTCATTAAACAGTTCAGTTAGTCAGTTAGGGAGTAATTG
ATTCATTTATATATGTATTGCAGTTCAGCATCCTTATAGAGTGAAATATCCTATATAATACATGA
CCTTCTTAGTTCATCTATTGAATGAAGGAAGACGAGCTTAGCCAATGAGGAACTTAATAACGAAT
TACCATAAGGTAAGGATTTCATACCAGTCCTACCACGAGCTTAGT
Right flanking sequence: Indices 466220 -- 466719
AGTTACGTTAGCCAAAGATACTATGAGCAACGACATTACCGTGAAACGTAAACGAAGATACGACG
TAAGACATTACCGGGATTCAGGAAGGAACGGGTCTCGGATACGGAGGTGAAGATAGGACGTAGGG
TTGGAACAGAAGGTCGGGTACAAATAGAAGGGTCGGATACCACAGAATGGAATACCCTTCGTTAA
CCCTTCGTTAGTTTATGAAAACACCCCAGTATGGGATAACCTTTTGGATATCTCTTGAGTGATTA
CAGGATCTTGATCAAAAGGATGGAATTCTATTAATCGGTAATATCTTGATCGATTTTATACAACA
TACCCACCCTCAAACTAGATTGTGTATACAATCACACCTTCTTTGTTATTGCAGGCAGGGATCGG
ACAACACCTATTGCGTACGAGAGCTGGCTGGTTGTTGTCGAGCGATAACTGAGCCGGTACCAGAA
TGAGATACTTGGTGGGTCCCAGAGATCGAAATAAATTAGAGTTGG
Found at i:466977 original size:14 final size:14
Alignment explanation
Indices: 466949--466990 Score: 57
Period size: 14 Copynumber: 2.9 Consensus size: 14
466939 AGCAGCCCTT
*
466949 ATATAGTAGTAGTGG
1 ATATA-TAGTGGTGG
466964 ATATATAGTGGTGG
1 ATATATAGTGGTGG
*
466978 AAATATAGTGGTG
1 ATATATAGTGGTG
466991 AAATATTGTA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
14 20 0.80
15 5 0.20
ACGTcount: A:0.33, C:0.00, G:0.33, T:0.33
Consensus pattern (14 bp):
ATATATAGTGGTGG
Left flanking sequence: Indices 466449 -- 466948
GATAACCTTTTGGATATCTCTTGAGTGATTACAGGATCTTGATCAAAAGGATGGAATTCTATTAA
TCGGTAATATCTTGATCGATTTTATACAACATACCCACCCTCAAACTAGATTGTGTATACAATCA
CACCTTCTTTGTTATTGCAGGCAGGGATCGGACAACACCTATTGCGTACGAGAGCTGGCTGGTTG
TTGTCGAGCGATAACTGAGCCGGTACCAGAATGAGATACTTGGTGGGTCCCAGAGATCGAAATAA
ATTAGAGTTGGTCCCACAAACAGAGCTGGTACAACTTATCAAAATAACTGGTACCGCAGAGATAT
AATGGGAATGGGCCCACAGAGGCGTCATGAGATGAGCTGGCACCACCAGACCGGGTTGAACATCC
ACCATATTAGTTACCTATCATTGAATTGAATTGAAAATACTCGGTTACTGTTAGGGAGCTTATTA
GCCTATTTCTTTATGTAATGAAAGCAGCGCAGTCCAGCAGCCCTT
Right flanking sequence: Indices 466991 -- 467490
AAATATTGTATATAATGAAAACCTTGCCCCCCGGCCCCTTATTTCTCCTCTGGCGGCTTCGCACC
TTGTTCATATATGGAATGAATGGAGAGGAGCTTAGCTTAAAAGTGACAGACAGAATGACAGTGGC
GTTCGCTGCAGAGGGACAGACGGGAGATCCGGAACTTAGCCCAGTATACGACGTACGACATTACG
GCAGGACAGGACGGGTTTCGGATAGGAGGGTCAGATACAGAGGGCCGGGTACGGATACATAGGTC
GGATACCACGGAATACCCAGTTCAGCCAATACACCCAGATCGGTCAGACCAGCTCAGCGAAGAAT
AGAACATAGCGGTCAGACCAGTACGTTAATGCCCTTGATTGAGATAATATACTCGGTAGGCATAC
CCCCCTCGACCTCACCCCTGATGTTGACGGAATTACGTATACAATCAAACTGAATATGGTTGCTG
GCGAGGAATCTGTTGGACACTCACATCAGGCTGGAAGGCAGGCAG
Found at i:466995 original size:13 final size:14
Alignment explanation
Indices: 466955--466996 Score: 59
Period size: 14 Copynumber: 3.1 Consensus size: 14
466945 CCTTATATAG
* *
466955 TAGTAGTGGATATA
1 TAGTGGTGGAAATA
466969 TAGTGGTGGAAATA
1 TAGTGGTGGAAATA
466983 TAGTGGT-GAAATA
1 TAGTGGTGGAAATA
466996 T
1 T
466997 TGTATATAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
13 7 0.27
14 19 0.73
ACGTcount: A:0.36, C:0.00, G:0.31, T:0.33
Consensus pattern (14 bp):
TAGTGGTGGAAATA
Left flanking sequence: Indices 466455 -- 466954
CTTTTGGATATCTCTTGAGTGATTACAGGATCTTGATCAAAAGGATGGAATTCTATTAATCGGTA
ATATCTTGATCGATTTTATACAACATACCCACCCTCAAACTAGATTGTGTATACAATCACACCTT
CTTTGTTATTGCAGGCAGGGATCGGACAACACCTATTGCGTACGAGAGCTGGCTGGTTGTTGTCG
AGCGATAACTGAGCCGGTACCAGAATGAGATACTTGGTGGGTCCCAGAGATCGAAATAAATTAGA
GTTGGTCCCACAAACAGAGCTGGTACAACTTATCAAAATAACTGGTACCGCAGAGATATAATGGG
AATGGGCCCACAGAGGCGTCATGAGATGAGCTGGCACCACCAGACCGGGTTGAACATCCACCATA
TTAGTTACCTATCATTGAATTGAATTGAAAATACTCGGTTACTGTTAGGGAGCTTATTAGCCTAT
TTCTTTATGTAATGAAAGCAGCGCAGTCCAGCAGCCCTTATATAG
Right flanking sequence: Indices 466997 -- 467496
TGTATATAATGAAAACCTTGCCCCCCGGCCCCTTATTTCTCCTCTGGCGGCTTCGCACCTTGTTC
ATATATGGAATGAATGGAGAGGAGCTTAGCTTAAAAGTGACAGACAGAATGACAGTGGCGTTCGC
TGCAGAGGGACAGACGGGAGATCCGGAACTTAGCCCAGTATACGACGTACGACATTACGGCAGGA
CAGGACGGGTTTCGGATAGGAGGGTCAGATACAGAGGGCCGGGTACGGATACATAGGTCGGATAC
CACGGAATACCCAGTTCAGCCAATACACCCAGATCGGTCAGACCAGCTCAGCGAAGAATAGAACA
TAGCGGTCAGACCAGTACGTTAATGCCCTTGATTGAGATAATATACTCGGTAGGCATACCCCCCT
CGACCTCACCCCTGATGTTGACGGAATTACGTATACAATCAAACTGAATATGGTTGCTGGCGAGG
AATCTGTTGGACACTCACATCAGGCTGGAAGGCAGGCAGGCTTTA
Found at i:468487 original size:2 final size:2
Alignment explanation
Indices: 468480--468511 Score: 50
Period size: 2 Copynumber: 17.0 Consensus size: 2
468470 ACTATTCATA
468480 AT AT AT AT -T AT AT AT A- AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
468512 TAATATGTAT
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
1 2 0.07
2 26 0.93
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Left flanking sequence: Indices 467980 -- 468479
TGGTGGGATTGCTGACTGGCTTGCTTGCTTTTAGTGCTAGCAGCTTTTTTAGAGCCGCGGATCCT
GGAGCAACCACCTTTTTCTCCGAGGGCACAAGATCTTACCCTGGCTGCTGGTCGGGGAGGTACTT
CAGCTATGAGGGAGTGGGTCCAGTGTTCCTTTCTTCGGGAACAGATAGGAGCCCAGTGCGCCTGC
TTGATTCCGGAAAAGAGAGTTGCCCGGTTTCTGCTGTAGAATGAATAACGCTAGCTTGATCGTGG
GGTGACTGAGTGCGGACCAGACAGATTCTATTTCCTGAGTGGGATCTAGAACCTCCCGAACCCAC
TAAGTCTTTAGGTTACCGCCCACACTCAATGCCCTATAGTTTACTCCCGCTCCCTAAACTGTGGA
ACCTTGAAAGGAACCTACTAACCTCACCCACCCCGCTAAGTGATCTTCGGGGAAGACGGCAAGGT
AGGCTTTCTTCCGTTCGTGAATCTATCCATCATTTACTATTCATA
Right flanking sequence: Indices 468512 -- 469011
TAATATGTATTTATCAGAAAGGAATGGTCATGGTCCACTCGCAGCAGTCCGTTTCAACTCTCAGT
CGGGTATCTCGCAGCCGGGCTTGAATAGCCTATTTTGGAAGAACCCAGCTTAAACTAGTTACAAC
TTAATATCATATGTTCTGGCGGGCACGGACAATCTATATAGAGTTATAGAACAGGCATTGAGCTC
AGCAGGCCAGACATAATCTTTTTTATGTATAGGGACGGAATACCCGGATATTTCATTATGGCAGG
AGAATCCTTTTTCACCTACACAAGAAAGATGGAGAATAGGTAAGGTAAGGCGGAAAGTCTGAGTT
AGTTAGTTAGTTTCGGGCCTAGTATCGGGCCTAGTTAGTTTATGCTAGGGCGTTTATAATAAACA
ATACTCTCCATCTGGGCAAAGCCTTTCGGGCGGGCTCCTGGCTTGCTGGTACCGGCCTCTTGCTA
TAATAGCTTTAGCTGGGATATCGATGGCTTTGGATTGCTGGCTAG
Found at i:468494 original size:9 final size:8
Alignment explanation
Indices: 468480--468511 Score: 50
Period size: 7 Copynumber: 4.2 Consensus size: 8
468470 ACTATTCATA
468480 ATATATAT
1 ATATATAT
468488 -TATATAT
1 ATATATAT
468495 A-ATATAT
1 ATATATAT
468502 ATATATAT
1 ATATATAT
468510 AT
1 AT
468512 TAATATGTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
7 14 0.64
8 8 0.36
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (8 bp):
ATATATAT
Left flanking sequence: Indices 467980 -- 468479
TGGTGGGATTGCTGACTGGCTTGCTTGCTTTTAGTGCTAGCAGCTTTTTTAGAGCCGCGGATCCT
GGAGCAACCACCTTTTTCTCCGAGGGCACAAGATCTTACCCTGGCTGCTGGTCGGGGAGGTACTT
CAGCTATGAGGGAGTGGGTCCAGTGTTCCTTTCTTCGGGAACAGATAGGAGCCCAGTGCGCCTGC
TTGATTCCGGAAAAGAGAGTTGCCCGGTTTCTGCTGTAGAATGAATAACGCTAGCTTGATCGTGG
GGTGACTGAGTGCGGACCAGACAGATTCTATTTCCTGAGTGGGATCTAGAACCTCCCGAACCCAC
TAAGTCTTTAGGTTACCGCCCACACTCAATGCCCTATAGTTTACTCCCGCTCCCTAAACTGTGGA
ACCTTGAAAGGAACCTACTAACCTCACCCACCCCGCTAAGTGATCTTCGGGGAAGACGGCAAGGT
AGGCTTTCTTCCGTTCGTGAATCTATCCATCATTTACTATTCATA
Right flanking sequence: Indices 468512 -- 469011
TAATATGTATTTATCAGAAAGGAATGGTCATGGTCCACTCGCAGCAGTCCGTTTCAACTCTCAGT
CGGGTATCTCGCAGCCGGGCTTGAATAGCCTATTTTGGAAGAACCCAGCTTAAACTAGTTACAAC
TTAATATCATATGTTCTGGCGGGCACGGACAATCTATATAGAGTTATAGAACAGGCATTGAGCTC
AGCAGGCCAGACATAATCTTTTTTATGTATAGGGACGGAATACCCGGATATTTCATTATGGCAGG
AGAATCCTTTTTCACCTACACAAGAAAGATGGAGAATAGGTAAGGTAAGGCGGAAAGTCTGAGTT
AGTTAGTTAGTTTCGGGCCTAGTATCGGGCCTAGTTAGTTTATGCTAGGGCGTTTATAATAAACA
ATACTCTCCATCTGGGCAAAGCCTTTCGGGCGGGCTCCTGGCTTGCTGGTACCGGCCTCTTGCTA
TAATAGCTTTAGCTGGGATATCGATGGCTTTGGATTGCTGGCTAG
Found at i:468498 original size:16 final size:16
Alignment explanation
Indices: 468477--468522 Score: 65
Period size: 16 Copynumber: 2.8 Consensus size: 16
468467 TTTACTATTC
468477 ATAATATATATTATAT
1 ATAATATATATTATAT
468493 ATAATATATATATATAT
1 ATAATATATAT-TATAT
*
468510 ATTAATATGTATT
1 A-TAATATATATT
468523 TATCAGAAAG
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
16 11 0.41
17 7 0.26
18 9 0.33
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (16 bp):
ATAATATATATTATAT
Left flanking sequence: Indices 467977 -- 468476
GGCTGGTGGGATTGCTGACTGGCTTGCTTGCTTTTAGTGCTAGCAGCTTTTTTAGAGCCGCGGAT
CCTGGAGCAACCACCTTTTTCTCCGAGGGCACAAGATCTTACCCTGGCTGCTGGTCGGGGAGGTA
CTTCAGCTATGAGGGAGTGGGTCCAGTGTTCCTTTCTTCGGGAACAGATAGGAGCCCAGTGCGCC
TGCTTGATTCCGGAAAAGAGAGTTGCCCGGTTTCTGCTGTAGAATGAATAACGCTAGCTTGATCG
TGGGGTGACTGAGTGCGGACCAGACAGATTCTATTTCCTGAGTGGGATCTAGAACCTCCCGAACC
CACTAAGTCTTTAGGTTACCGCCCACACTCAATGCCCTATAGTTTACTCCCGCTCCCTAAACTGT
GGAACCTTGAAAGGAACCTACTAACCTCACCCACCCCGCTAAGTGATCTTCGGGGAAGACGGCAA
GGTAGGCTTTCTTCCGTTCGTGAATCTATCCATCATTTACTATTC
Right flanking sequence: Indices 468523 -- 469022
TATCAGAAAGGAATGGTCATGGTCCACTCGCAGCAGTCCGTTTCAACTCTCAGTCGGGTATCTCG
CAGCCGGGCTTGAATAGCCTATTTTGGAAGAACCCAGCTTAAACTAGTTACAACTTAATATCATA
TGTTCTGGCGGGCACGGACAATCTATATAGAGTTATAGAACAGGCATTGAGCTCAGCAGGCCAGA
CATAATCTTTTTTATGTATAGGGACGGAATACCCGGATATTTCATTATGGCAGGAGAATCCTTTT
TCACCTACACAAGAAAGATGGAGAATAGGTAAGGTAAGGCGGAAAGTCTGAGTTAGTTAGTTAGT
TTCGGGCCTAGTATCGGGCCTAGTTAGTTTATGCTAGGGCGTTTATAATAAACAATACTCTCCAT
CTGGGCAAAGCCTTTCGGGCGGGCTCCTGGCTTGCTGGTACCGGCCTCTTGCTATAATAGCTTTA
GCTGGGATATCGATGGCTTTGGATTGCTGGCTAGTGGCCTTTTAC
Found at i:468503 original size:18 final size:18
Alignment explanation
Indices: 468478--468517 Score: 66
Period size: 16 Copynumber: 2.3 Consensus size: 18
468468 TTACTATTCA
468478 TAATATATAT-TATATA-
1 TAATATATATATATATAT
468494 TAATATATATATATATAT
1 TAATATATATATATATAT
468512 TAATAT
1 TAATAT
468518 GTATTTATCA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
16 10 0.45
17 6 0.27
18 6 0.27
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATATATATATATATAT
Left flanking sequence: Indices 467978 -- 468477
GCTGGTGGGATTGCTGACTGGCTTGCTTGCTTTTAGTGCTAGCAGCTTTTTTAGAGCCGCGGATC
CTGGAGCAACCACCTTTTTCTCCGAGGGCACAAGATCTTACCCTGGCTGCTGGTCGGGGAGGTAC
TTCAGCTATGAGGGAGTGGGTCCAGTGTTCCTTTCTTCGGGAACAGATAGGAGCCCAGTGCGCCT
GCTTGATTCCGGAAAAGAGAGTTGCCCGGTTTCTGCTGTAGAATGAATAACGCTAGCTTGATCGT
GGGGTGACTGAGTGCGGACCAGACAGATTCTATTTCCTGAGTGGGATCTAGAACCTCCCGAACCC
ACTAAGTCTTTAGGTTACCGCCCACACTCAATGCCCTATAGTTTACTCCCGCTCCCTAAACTGTG
GAACCTTGAAAGGAACCTACTAACCTCACCCACCCCGCTAAGTGATCTTCGGGGAAGACGGCAAG
GTAGGCTTTCTTCCGTTCGTGAATCTATCCATCATTTACTATTCA
Right flanking sequence: Indices 468518 -- 469017
GTATTTATCAGAAAGGAATGGTCATGGTCCACTCGCAGCAGTCCGTTTCAACTCTCAGTCGGGTA
TCTCGCAGCCGGGCTTGAATAGCCTATTTTGGAAGAACCCAGCTTAAACTAGTTACAACTTAATA
TCATATGTTCTGGCGGGCACGGACAATCTATATAGAGTTATAGAACAGGCATTGAGCTCAGCAGG
CCAGACATAATCTTTTTTATGTATAGGGACGGAATACCCGGATATTTCATTATGGCAGGAGAATC
CTTTTTCACCTACACAAGAAAGATGGAGAATAGGTAAGGTAAGGCGGAAAGTCTGAGTTAGTTAG
TTAGTTTCGGGCCTAGTATCGGGCCTAGTTAGTTTATGCTAGGGCGTTTATAATAAACAATACTC
TCCATCTGGGCAAAGCCTTTCGGGCGGGCTCCTGGCTTGCTGGTACCGGCCTCTTGCTATAATAG
CTTTAGCTGGGATATCGATGGCTTTGGATTGCTGGCTAGTGGCCT
Found at i:471155 original size:65 final size:67
Alignment explanation
Indices: 471051--471197 Score: 235
Period size: 65 Copynumber: 2.2 Consensus size: 67
471041 TAATAGAGAN
* **
471051 ATATGTCATTATGCATGAATGAATGAGATATGTAATTACGCT-T-TAGCGGATCATGCATATATT
1 ATATGTCATTATGCATGAATGAATGAGATATGTAATTACGCTCTCAAGCCAATCATGCATATATT
471114 AT
66 AT
*
471116 ATATGTCATTATGCATGAATGAATGAGATATGTAATTACGCTCTCGAATCCAATCATGCATATAT
1 ATATGTCATTATGCATGAATGAATGAGATATGTAATTACGCTCTC-AAGCCAATCATGCATATAT
471181 TAT
65 TAT
471184 ATATGTCATTATGC
1 ATATGTCATTATGC
471198 TATTTTGAGA
Statistics
Matches: 75, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
65 42 0.56
66 1 0.01
68 32 0.43
ACGTcount: A:0.34, C:0.13, G:0.16, T:0.37
Consensus pattern (67 bp):
ATATGTCATTATGCATGAATGAATGAGATATGTAATTACGCTCTCAAGCCAATCATGCATATATT
AT
Left flanking sequence: Indices 470551 -- 471050
TTTGCGTAATAAATTTTGACTTATTTTCAATTTTCAATACTAGATAGAATGATTTTCATGGCTTT
GAAATATGATTGAAATGACTACTTTACTTACTTGTCCCTTTCTTTCATTTCCACGAAGTGGGTAG
GCGTGCGTGAGAGGATGGGGAGAGGATTCGCTCGATACTAAGCGAAGACGACCGAACCCCATCCG
AATCAACAGTGGGTAGAGATGAGGGTGAGCATTCCCCTTACGCATAGATACCTTACCGAGAGATC
AGGCTTTGAGCTTCTACCGTAAGTTCTAGTCCTCAGATCGGGTGCAATCACTCGCATCACTAGGC
CCGTCACAAGGCAATTGTTTCTTTTTTCCCCCCCGTTACCACCTCCGTCTTTTTTACCTGCTCGC
CCTCGATCCATTCATTAGAAGAATCTTGCATCCGGAGATCAATCCCTTCTATATCCTCTCACTTC
CTCGATCTAAGTTCGGAAAAAGGTAGAAGGAGAAGTAATAGAGAN
Right flanking sequence: Indices 471198 -- 471697
TATTTTGAGAGATCGAATCAAGTCAAGTTTCGGCAAAGCGCCTGAACTCTAAGAACTTTGAGAGA
AGCGCTCCCTCGGCGAGACAACACTCCGTTAGAGCTAATTCCCTCCGAGCTTGAGAGCTAGGGGG
TCAGCCCTATCTCAAACAGATATAGAGACAGACATGTGCTTCGGCTACGCTACGAAGCTTTCTCT
TTCACTACCACATGCTCATATATAACTACCACCATAACAATGACTGGTCTTTCTTCTCTCTAGCT
AGGAAATCACTATCATTATATATGTCATTACGGCAGCCAATGAATTGGATTCAAGTTCAATTGAC
TTATTGGGTGCCCCTCTCAAATAAGTAACTAGCGTTGGTCGAGCGATGGCGGCCTTATTAGTCGA
GCGTTCGTACCTCACCCTGCCGGGGGCACCCTACTAATTTGGCCATTTTCTCTTGGCGGAGGTTT
TTCAAGATTCCCCTACTATTATAGCATTTTCAGGAGGCGGAGGTA
Found at i:472591 original size:31 final size:31
Alignment explanation
Indices: 472556--472618 Score: 83
Period size: 33 Copynumber: 2.0 Consensus size: 31
472546 GTAGTTATGG
*
472556 GAAT-ATGACAAATCAGCTCTCATTGGAGTTA
1 GAATAATGA-AAATCAGCTCTCATCGGAGTTA
472587 GAATAAGATGAAAATCAGCTCTCATCGGAGTT
1 GAAT-A-ATGAAAATCAGCTCTCATCGGAGTT
472619 TTAGCAAATC
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
31 4 0.14
33 20 0.71
34 4 0.14
ACGTcount: A:0.37, C:0.16, G:0.21, T:0.27
Consensus pattern (31 bp):
GAATAATGAAAATCAGCTCTCATCGGAGTTA
Left flanking sequence: Indices 472056 -- 472555
TTTGATGTTAGATTGATTCTCAGATTTTCCATATCAATTCTTACTAGCCTTAGTCCAAGCACTTA
TTATAGAGTCTTGCCTTCTTGCTTGGTCCAGAGAAACAAGCCTTTAAGAGAGTCTCGTCCATTGT
GGAGTGAAGACCGTCGTCTTAAGCGCTGTATAGACAGAATACTTCAAAGTATCGGATAGGAAGAT
TCTAATTAAAGCACTTATTGGAGAGTAAGATTCATTAGTCCCAAAACAAAAAAACACCCCTACTA
TAACCTTTTCAGTTTGTCTAGGCTTTTCTCATCTGCATGTGGGAGCTTCGGAGAGGAATATCTAA
TTGGAGAGGAAGAGTTCAATTTACTACTATCATTGGAGCTTCGGAGAGGAAGATTCTGAAGTTCG
TAGAGTAAGATTAAGCTGTACATCCCCAACCTGGCTGGACCATCCTAGCACGCACCAACAGCTCA
CTTTCTTTTAGAACATAACCCCCACTTATATTGGAGTAGTTATGG
Right flanking sequence: Indices 472619 -- 473118
TTAGCAAATCTTTGTACAAATACCTAACAAATGATGTCGGAGCTTGTATCAAAGCTTTAAGTCAA
TATGCATATATTCTGGTTACTCACCATTCTTTCTTTGGTAGCTCTCAATTTGCTGTTGGAGCTAA
CACTGTAGATATGCGAGTCTAACGTAGATATGCCAGCATCATATGTAAAGATAAGCCATTACTTC
ATGAATTTCCCAGTTCTCAGAAGGCCAGGATCAGACTCTATCATCATCTGGATATGCCACCTTAT
ATTTATCAATTTACCATAGACAAAAGCCTTAATTATAGTCTCGTCCATGCACTTTGGTTGGTGGA
GTCTTAAGCTGTTAGAGAAAGAATGACTAGACAAGTCCAGTTCGGAGAGTAAGATTCTCAAAGCT
ATTCGGAGAGTAAGATCTATCGGAGTTAGAGGAAGATTCAAATCAGCTCTCACCAGACCGTCTTA
AGCTGTAGAGCTCCCTATTGGACTGGACTAGTTTCGGACAGGAAG
Found at i:475990 original size:15 final size:15
Alignment explanation
Indices: 475967--476001 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
475957 TTCCATTCGT
475967 TGTAGCTGTAGTTGC
1 TGTAGCTGTAGTTGC
*
475982 TGTATCTGTAGTTGC
1 TGTAGCTGTAGTTGC
*
475997 CGTAG
1 TGTAG
476002 TTGCTGTATA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.14, C:0.14, G:0.31, T:0.40
Consensus pattern (15 bp):
TGTAGCTGTAGTTGC
Left flanking sequence: Indices 475467 -- 475966
GCTTCTACTAAGGAGGAAAAGAGGCCTATTTTTCCTAACTAATCTTGTCGGAGCTTCTTCACTTG
GATCTACTGGATATGCACCTTATCTTTCTCAAGACCATATCTCTTGGGCCACTACCTCGAATTAG
ATCTACCCATATGCCACCTTTTCTTTAGAATTTAGGCTTTTCACCCACCAGCAGCCTACCTTGCA
GACAACATAATCTGTAGTACCCTCGACTGAAACTGGTAAGCAGCATAAGAAACCACCATAAAGTG
ACACATTCTATTTCTCTCTACGGGTCCACCCGGCATCCAACATAATGATGGGAATCACTGTGCTA
TGTGAATTGAGATCAACCCTCTTGCTTTGGCCGGTACCGAAGAAATTCACGCTATGTTGTATAAA
AACAAACGTATATAAATCTACGCTGTGTGGTGTGTCAATATTCCATATAAGCCGCTGTATCTGTC
GTTGTAGCTGCCGCTGTTTCCGTATCCGTCGTTGTTTCCATTCGT
Right flanking sequence: Indices 476002 -- 476501
TTGCTGTATATGTATATGTATATGTTGTAGCTGCCGTAGCTGTTGTCATTCGTAGTAGCTGGCGT
AGTTGTTGTATCCGTAGTTGCTGTAGTGGCTGTATTTGTTGCCGTAGCCTGCTCCCCCAACAAAG
GCTGTATTCCGTCCGTTGTACTGCCAACCCCTGGGTGCTGACTATAAAGAATCACTATCATCGAT
CACTGTAGGCCCCGCTCTGCCAATGTGGGAAATCAATAACTAACCGGTGCTACTTCGCTATCGCT
GACTGTCAATCGTTTACATAGAAAATGGCACGAACACCTTACAGGGACGTGGATTGAAAACGGGT
AAAACGCACTAAGAACCGACTCCTTCCTGTGTATGTATCGAACTGTTAACGGTGGATAATCTATG
AAAGTTCCCGCACCAAGAACCACTACCTCCTGGGCATGGGCGAGAACAGGTTATGTATAACTCCT
TCCTGGACACGTACAACTGGGTATCGGAACTGACTGGGAATCGAC
Found at i:476059 original size:28 final size:27
Alignment explanation
Indices: 476028--476089 Score: 79
Period size: 28 Copynumber: 2.3 Consensus size: 27
476018 TGTATATGTT
*
476028 GTAGCTGCCGTAGCTGTTGTCATTCGTA
1 GTAGCTGCCGTAGCTGTTGT-ATCCGTA
* *
476056 GTAGCTGGCGTAGTTGTTGTATCCGTA
1 GTAGCTGCCGTAGCTGTTGTATCCGTA
*
476083 GTTGCTG
1 GTAGCTG
476090 TAGTGGCTGT
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
27 12 0.40
28 18 0.60
ACGTcount: A:0.13, C:0.18, G:0.32, T:0.37
Consensus pattern (27 bp):
GTAGCTGCCGTAGCTGTTGTATCCGTA
Left flanking sequence: Indices 475528 -- 476027
CTTGGATCTACTGGATATGCACCTTATCTTTCTCAAGACCATATCTCTTGGGCCACTACCTCGAA
TTAGATCTACCCATATGCCACCTTTTCTTTAGAATTTAGGCTTTTCACCCACCAGCAGCCTACCT
TGCAGACAACATAATCTGTAGTACCCTCGACTGAAACTGGTAAGCAGCATAAGAAACCACCATAA
AGTGACACATTCTATTTCTCTCTACGGGTCCACCCGGCATCCAACATAATGATGGGAATCACTGT
GCTATGTGAATTGAGATCAACCCTCTTGCTTTGGCCGGTACCGAAGAAATTCACGCTATGTTGTA
TAAAAACAAACGTATATAAATCTACGCTGTGTGGTGTGTCAATATTCCATATAAGCCGCTGTATC
TGTCGTTGTAGCTGCCGCTGTTTCCGTATCCGTCGTTGTTTCCATTCGTTGTAGCTGTAGTTGCT
GTATCTGTAGTTGCCGTAGTTGCTGTATATGTATATGTATATGTT
Right flanking sequence: Indices 476090 -- 476589
TAGTGGCTGTATTTGTTGCCGTAGCCTGCTCCCCCAACAAAGGCTGTATTCCGTCCGTTGTACTG
CCAACCCCTGGGTGCTGACTATAAAGAATCACTATCATCGATCACTGTAGGCCCCGCTCTGCCAA
TGTGGGAAATCAATAACTAACCGGTGCTACTTCGCTATCGCTGACTGTCAATCGTTTACATAGAA
AATGGCACGAACACCTTACAGGGACGTGGATTGAAAACGGGTAAAACGCACTAAGAACCGACTCC
TTCCTGTGTATGTATCGAACTGTTAACGGTGGATAATCTATGAAAGTTCCCGCACCAAGAACCAC
TACCTCCTGGGCATGGGCGAGAACAGGTTATGTATAACTCCTTCCTGGACACGTACAACTGGGTA
TCGGAACTGACTGGGAATCGACTGTTGGATCAGCTCTTGGCATGGAATACCAGCATCTAATGAAT
CAACACCAGGCAATCATAGGTAACCTATCTGAAAGGGGCGAGGGG
Found at i:480914 original size:17 final size:17
Alignment explanation
Indices: 480892--480937 Score: 53
Period size: 17 Copynumber: 2.8 Consensus size: 17
480882 CCTAAAGGCC
480892 CTATAAGTAAGGTAAGG
1 CTATAAGTAAGGTAAGG
480909 CTATAAGATAAGG-AAGG
1 CTATAAG-TAAGGTAAGG
480926 --ATAAGGTAAGGT
1 CTATAA-GTAAGGT
480938 CCCGGAGGGG
Statistics
Matches: 26, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
15 9 0.35
16 1 0.04
17 11 0.42
18 5 0.19
ACGTcount: A:0.43, C:0.04, G:0.30, T:0.22
Consensus pattern (17 bp):
CTATAAGTAAGGTAAGG
Left flanking sequence: Indices 480392 -- 480891
CCTTATTCCTTATCGATCGTGCGAACTAAGGCAGTGGGTATTCGTTACAGTAAGGCCCGGGTTGG
GGCCCTAGCTCAAAATATCAGGTTCAGCGCATCCAGCCAGACTGTACGGTTTACCATTCATAGTA
AGGCAGGTAAGGTAACGTTATCACAAAGGCAGGGAGACAGGTGGAGTAGTGGATGATCATCTTCC
AGATGCTAATCTTTTCATGGTTTAAGCTATCCCCAATTACCTAGAATAGATTGCTCTGTTTCTTA
TCAAAGGTTAAGATCGGCAATAAGAAACTCTGACCTTTAGAATTGAGCTCGGCGATAAGCACTAT
TCCAGACACATATAGGAACAACCCAAGTAACTTGGCAAACGTACCTCGGCAAACATCATTGAACA
GCTAAGAACAGCTAAGGTCCTGTTCTATCCTATAAAGAAGGTTGAAAGTAAGGTCTTAAGGTAAG
GTCCTAACCTTTAAGGTCTATCTATTCTATAAGGTCCTAAAGGCC
Right flanking sequence: Indices 480938 -- 481437
CCCGGAGGGGCTTGCGCTTCCTAGTGCAAGGAAAGATCTATCTCTCTAGGTAAGGCCTCACTTAC
CTACTTGACTTGGCTGGAAACATATACACAAATTCCCGTATTCGCCGAGCTATGTCTTGCTAACC
AAGATTACCCCTCCCCCTACACATACTGTGATCAATGAAAATGAGTGACCACTTAAGCGTATATA
ATATGACGGACCCATTAACAGCTAGCAAAAGAGCTCTCTCTTAGGATCAGTTACTGCTGCTAGAA
GGTTGGCTAAAGTGACCATGCATAATGACATATATAATATATGCGTTGTCTGCTAAGGCATAATT
TGCTAAGGCATAATGACATATATAAAGAATGACGGACACACATATCTCATTCATGATTGGATCAT
GAATGAAAGGGACATATATCCTTCATTACGTAATGACATATATAATGAATGACTGGATTCGAGAG
CGTAATTACATATATAATAGCAACATTTTTTGTCTTATCTCTCTA
Found at i:481268 original size:15 final size:15
Alignment explanation
Indices: 481248--481276 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
481238 ATGCGTTGTC
481248 TGCTAAGGCATAATT
1 TGCTAAGGCATAATT
481263 TGCTAAGGCATAAT
1 TGCTAAGGCATAAT
481277 GACATATATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.34, C:0.14, G:0.21, T:0.31
Consensus pattern (15 bp):
TGCTAAGGCATAATT
Left flanking sequence: Indices 480748 -- 481247
TTGGCAAACGTACCTCGGCAAACATCATTGAACAGCTAAGAACAGCTAAGGTCCTGTTCTATCCT
ATAAAGAAGGTTGAAAGTAAGGTCTTAAGGTAAGGTCCTAACCTTTAAGGTCTATCTATTCTATA
AGGTCCTAAAGGCCCTATAAGTAAGGTAAGGCTATAAGATAAGGAAGGATAAGGTAAGGTCCCGG
AGGGGCTTGCGCTTCCTAGTGCAAGGAAAGATCTATCTCTCTAGGTAAGGCCTCACTTACCTACT
TGACTTGGCTGGAAACATATACACAAATTCCCGTATTCGCCGAGCTATGTCTTGCTAACCAAGAT
TACCCCTCCCCCTACACATACTGTGATCAATGAAAATGAGTGACCACTTAAGCGTATATAATATG
ACGGACCCATTAACAGCTAGCAAAAGAGCTCTCTCTTAGGATCAGTTACTGCTGCTAGAAGGTTG
GCTAAAGTGACCATGCATAATGACATATATAATATATGCGTTGTC
Right flanking sequence: Indices 481277 -- 481776
GACATATATAAAGAATGACGGACACACATATCTCATTCATGATTGGATCATGAATGAAAGGGACA
TATATCCTTCATTACGTAATGACATATATAATGAATGACTGGATTCGAGAGCGTAATTACATATA
TAATAGCAACATTTTTTGTCTTATCTCTCTAGTTACTTTATTATACGTAATTACGTATATAATAA
GGGTTCATAGGGTTCCCGTTAGATCTTTCCATCTTCCTTCCCCTCAGCGGGAAAGCAACTTCGTA
CCTTTTTTCCTCTCCCTCTCGACGGTCGAGCGATGGCGGCCTTTTAGTCGAGAGTTCGCTTTCAT
TTTACTTATTGGGTGGGGGGGCTGCCGGGGGCATCCTCTCCTGTTAGTCGAGCATGCTTACGCAT
CCTCTGGAATTTGGTCGACGCGATGGCGGCCTTTTAGTCGAGAGTTCGCTTTCATTTTACTTATT
GGGTGGGGGGGCTGCCGGGGGCATCCTCTCCTGTTAGTCGAGCAT
Found at i:481711 original size:120 final size:119
Alignment explanation
Indices: 481560--481806 Score: 485
Period size: 120 Copynumber: 2.1 Consensus size: 119
481550 CCCTCTCGAC
481560 GGTCGAGCGATGGCGGCCTTTTAGTCGAGAGTTCGCTTTCATTTTACTTATTGGGTGGGGGGGCT
1 GGTCGAGCGATGGCGGCCTTTTAGTCGAGAGTTCGCTTTCATTTTACTTATTGGGTGGGGGGGCT
481625 GCCGGGGGCATCCTCTCCTGTTAGTCGAGCATGCTTACGCATCCTCTGGAATTT
66 GCCGGGGGCATCCTCTCCTGTTAGTCGAGCATGCTTACGCATCCTCTGGAATTT
481679 GGTCGACGCGATGGCGGCCTTTTAGTCGAGAGTTCGCTTTCATTTTACTTATTGGGTGGGGGGGC
1 GGTCGA-GCGATGGCGGCCTTTTAGTCGAGAGTTCGCTTTCATTTTACTTATTGGGTGGGGGGGC
481744 TGCCGGGGGCATCCTCTCCTGTTAGTCGAGCATGCTTACGCATCCTCTGGAATTT
65 TGCCGGGGGCATCCTCTCCTGTTAGTCGAGCATGCTTACGCATCCTCTGGAATTT
481799 GGTCGAGC
1 GGTCGAGC
481807 CTGCTAACGC
Statistics
Matches: 127, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
119 8 0.06
120 119 0.94
ACGTcount: A:0.13, C:0.23, G:0.32, T:0.31
Consensus pattern (119 bp):
GGTCGAGCGATGGCGGCCTTTTAGTCGAGAGTTCGCTTTCATTTTACTTATTGGGTGGGGGGGCT
GCCGGGGGCATCCTCTCCTGTTAGTCGAGCATGCTTACGCATCCTCTGGAATTT
Left flanking sequence: Indices 481060 -- 481559
TGCTAACCAAGATTACCCCTCCCCCTACACATACTGTGATCAATGAAAATGAGTGACCACTTAAG
CGTATATAATATGACGGACCCATTAACAGCTAGCAAAAGAGCTCTCTCTTAGGATCAGTTACTGC
TGCTAGAAGGTTGGCTAAAGTGACCATGCATAATGACATATATAATATATGCGTTGTCTGCTAAG
GCATAATTTGCTAAGGCATAATGACATATATAAAGAATGACGGACACACATATCTCATTCATGAT
TGGATCATGAATGAAAGGGACATATATCCTTCATTACGTAATGACATATATAATGAATGACTGGA
TTCGAGAGCGTAATTACATATATAATAGCAACATTTTTTGTCTTATCTCTCTAGTTACTTTATTA
TACGTAATTACGTATATAATAAGGGTTCATAGGGTTCCCGTTAGATCTTTCCATCTTCCTTCCCC
TCAGCGGGAAAGCAACTTCGTACCTTTTTTCCTCTCCCTCTCGAC
Right flanking sequence: Indices 481807 -- 482306
CTGCTAACGCATCCTCCAAATATCCTCTTTTGGCCATGAAAAGTGATATTTCTATCATGATGAAA
TCATTCCCGTATCTATTCTGTCAATCATTTCTTTATCCATTCTATCTCTAGTTACCGAAATGATA
CGAGTCATTACTGACTGGTCCTGAGTTAGCTCTGATCAGCTTAGTCCCCCTTTACGACTAATAGA
GAATGGGCAGTAAGAAATATAGGTAAGGTTCTCCTTACCTTTCACCTTTCAGGACCTTACTGCCT
GAAAGGACCAACCCAACCCTTCTCACTCTTTGGGGGGAATAAATCATAGTACCTTTCCCTTCTAA
AGAAGGGCAGGACCTTACCGCCCGCCTGAAATCTATTCCCGAACCTACCTAAATTTCACCCGGTA
AGTAAGCTAACTTTCGATCGATATTTCCCCACAAAACTGAGCTGAGTTATTGGCATTGGCACTAG
CACTGGCACTAGCATTAGCCCCTGTTTGATTCGTTATTATTAGCA
Found at i:488336 original size:23 final size:23
Alignment explanation
Indices: 488306--488349 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
488296 GCAATGGCCA
*
488306 TAAGCGTTACGAACCTCTTAGGC
1 TAAGCGTTACAAACCTCTTAGGC
*
488329 TAAGCGTTACAAAGCTCTTAG
1 TAAGCGTTACAAACCTCTTAG
488350 AATGCATATT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.27
Consensus pattern (23 bp):
TAAGCGTTACAAACCTCTTAGGC
Left flanking sequence: Indices 487806 -- 488305
CATCGAGGACGGGCTCCTCTCTCTCTTACCGCTAGGAAGGGTCAGGAGATCCTATATAGCCAAGG
AAAAGTGACTAGCCTATCTCTTGAAACTATTGAATGAAGTGGGGCTATTGAAGTTAAGGTGGAGA
CCGTTTATCGACCGCGAACATCCAGGGCGGATAAGGCACAGGAGACAGGCTAAGTAAGGCTACAA
ACTACAACCTCCAAACTGACAGGGCAGGGCAGACAGACAAGGGACAGGGCACAGGCTAAGGCGGA
CAGGGGACAGGGCACAGCGAATCAAACCCCTTAGGCCAGCTCTAGTCTGGGTTAATAAGCTCCCC
CCTTAGCTTAGGCCAGCTCTCTTGGTTATGAAGCTCTTACTAGTCATATTGTTAACCGGTTATAC
TCTCAGCAATAGATATTATATATTTGTAAGCAATAGAATAGATAGTTGGAAGCTTAGGGGTGACT
CTTCATACTCGAGAACAGAGTAGAGTAGATCTTAAGCAATGGCCA
Right flanking sequence: Indices 488350 -- 488849
AATGCATATTGAAAACTGTTAATACTACCTTAAATATAATAAGCTTAGTCGTAACTGGACTGGTT
ATACTCTTAATTAGAGTTGAGGTTATGCTAGTTATACTTACAGACATGAATAGAGTTTAGGTCAA
GCTATTACCATGAATAGACATAGAGGAGGGGACAGATTTATTACGGTCACTCTTAGGAAGCTTAT
TGGACACTGTTATGACTCTTAGAAATATATATTGATTAGCAGCACTGTACTGGACTGGCGAACCT
AGGAAGGACCTACCCATGACCATTAACTTATTATTGAGGAGCTCAACACTTGTCCCTCCCGACCT
ACCAGATAGATTGACTAGGGTTCTTCCTTTAGTCCCCATCCTTTCCAACTAATAATCTACATAAT
AGAAAGGAGACGTAACCAAATGTACAGGCATCTGTAATGTACAGGCATCTGTTCTGGAGCGCCTG
ATTCCTTACTTATTCAACCTGACTGCTATGCCAGTGTAGACAGAC
Found at i:488780 original size:17 final size:17
Alignment explanation
Indices: 488758--488791 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
488748 GACGTAACCA
488758 AATGTACAGGCATCTGT
1 AATGTACAGGCATCTGT
488775 AATGTACAGGCATCTGT
1 AATGTACAGGCATCTGT
488792 TCTGGAGCGC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (17 bp):
AATGTACAGGCATCTGT
Left flanking sequence: Indices 488258 -- 488757
ACTCTTCATACTCGAGAACAGAGTAGAGTAGATCTTAAGCAATGGCCATAAGCGTTACGAACCTC
TTAGGCTAAGCGTTACAAAGCTCTTAGAATGCATATTGAAAACTGTTAATACTACCTTAAATATA
ATAAGCTTAGTCGTAACTGGACTGGTTATACTCTTAATTAGAGTTGAGGTTATGCTAGTTATACT
TACAGACATGAATAGAGTTTAGGTCAAGCTATTACCATGAATAGACATAGAGGAGGGGACAGATT
TATTACGGTCACTCTTAGGAAGCTTATTGGACACTGTTATGACTCTTAGAAATATATATTGATTA
GCAGCACTGTACTGGACTGGCGAACCTAGGAAGGACCTACCCATGACCATTAACTTATTATTGAG
GAGCTCAACACTTGTCCCTCCCGACCTACCAGATAGATTGACTAGGGTTCTTCCTTTAGTCCCCA
TCCTTTCCAACTAATAATCTACATAATAGAAAGGAGACGTAACCA
Right flanking sequence: Indices 488792 -- 489291
TCTGGAGCGCCTGATTCCTTACTTATTCAACCTGACTGCTATGCCAGTGTAGACAGACTGCTATG
CCTGGGGATAACCTTGGGTAATATACTATGCAATGGAATCCCTTTCCTTTGGGTGAGTGAGCGTT
CTGCCTGCCACCAATATCCTTCGCCTTGTGGAGTTAGCGTTCATCCACGATTCTCCTTGCACTAG
GAAGCGCAAGCCCCTCCGGGACCTTCCTTTATTTCGTAGAGTTAGCGTTCATCCACGATTCTCCT
TGGACAGTAGGGCGTGCTATACTCATAAGTGCGATGGCTTTGTGGAGTGCTTATTCCTATTACTA
TTCCTATTCCTGTGCTTTATCATTTGCATGTATGGAGCGTTCTGGCCTGAACCAGAATCAAACTT
GCTTTTTCTTGTACCATTGTTCCCAGGTGAGTGGTATGGGCTGCGCTCTCTCGAGGGTTATGTGG
CTGGACTCTCTATTTTCTGGATATAGACTCTTCTTTATGTTATAG
Found at i:491300 original size:14 final size:14
Alignment explanation
Indices: 491277--491307 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
491267 ACTTAGAGCT
*
491277 TAATCGAAGGGGAA
1 TAATCAAAGGGGAA
491291 TAATCAAAGGGGAA
1 TAATCAAAGGGGAA
491305 TAA
1 TAA
491308 GCCGCAGAGG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.48, C:0.06, G:0.29, T:0.16
Consensus pattern (14 bp):
TAATCAAAGGGGAA
Left flanking sequence: Indices 490777 -- 491276
GTTGATGTACCGATTTCTTTATATACTTGCACCCCGGCGGACTAGTGAAGCCGGGGTTGGACGAC
GATAGATGAAGGACACCCAGTCGCCACGATGAGAGAACGATCCTACGCGATGGCACTAGAGCTTA
CCGGGAACAATCCTTCCTACCTGTAGCAGTTCACTTACCGACACGGAACAGGAGGTCCTTCATCA
CCAGCGCATAGAGCACCAGACGTAGCAGCACATACAGCACCTCACAGAAACACATAGACACCCTA
CAAGCCAGACATAGCAGAAGCGCCTACAACGTGGATATTGAAATGGATTCGATGTTGATATGGAG
GATGTTTAGTTCGATGTTGATTGGTGTTGGCGTTGGCAAGGGCAGAGAAGGAAACCACCTACGAG
ATGGTGGCACTACAGCTTCAGTTCACCGAACGATATGGAAACATAGTTCCTACCTGTAGACGTTC
ACTGAACGATACGAAACGCGAGGTCCTACAGCAACACTTAGAGCT
Right flanking sequence: Indices 491308 -- 491807
GCCGCAGAGGTTACTCACAGGGCCTAATCCATGGGGATACACATAGAGCTACACGTAGAGGAGTA
CTCTCTGAGCTACAACGTAGAGCTACACAATGCATGAGGTTCGATGAGGTTCGATGAGGTACACG
TAGAGCTACGATGGATGAGGTTACACGATGATGAGGTCCCGATTAGTTGCTGATATCCAGTTGAC
GATACCCGGGAGAACAGACCCACCGGGGTCATTCCTAGTCGGTTGACACAGGGAAGGGGCCTAAT
CCATGGGGCTAATCCATGGGGAAAATACATGGGGCTAATACATGGGGATACTCGACGCTGTCGAT
CCATGAGTTTATGCCGGTACTCAATGCCGGTACTCGATGCTGGTAGGAGAGATCCCAAGAGGAGA
TCCAAGAGTTGATGTACTCGATGCTGCTGATCCCACGAGAATATGGCCACGTGGAGATGCCAGTA
ATAGCCGATTGACATAGCCTGGTGTATTTGCTTAGAGTCAATTGT
Found at i:491421 original size:10 final size:10
Alignment explanation
Indices: 491406--491432 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
491396 TACACAATGC
491406 ATGAGGTTCG
1 ATGAGGTTCG
491416 ATGAGGTTCG
1 ATGAGGTTCG
491426 ATGAGGT
1 ATGAGGT
491433 ACACGTAGAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.22, C:0.07, G:0.41, T:0.30
Consensus pattern (10 bp):
ATGAGGTTCG
Left flanking sequence: Indices 490906 -- 491405
ACCGGGAACAATCCTTCCTACCTGTAGCAGTTCACTTACCGACACGGAACAGGAGGTCCTTCATC
ACCAGCGCATAGAGCACCAGACGTAGCAGCACATACAGCACCTCACAGAAACACATAGACACCCT
ACAAGCCAGACATAGCAGAAGCGCCTACAACGTGGATATTGAAATGGATTCGATGTTGATATGGA
GGATGTTTAGTTCGATGTTGATTGGTGTTGGCGTTGGCAAGGGCAGAGAAGGAAACCACCTACGA
GATGGTGGCACTACAGCTTCAGTTCACCGAACGATATGGAAACATAGTTCCTACCTGTAGACGTT
CACTGAACGATACGAAACGCGAGGTCCTACAGCAACACTTAGAGCTTAATCGAAGGGGAATAATC
AAAGGGGAATAAGCCGCAGAGGTTACTCACAGGGCCTAATCCATGGGGATACACATAGAGCTACA
CGTAGAGGAGTACTCTCTGAGCTACAACGTAGAGCTACACAATGC
Right flanking sequence: Indices 491433 -- 491932
ACACGTAGAGCTACGATGGATGAGGTTACACGATGATGAGGTCCCGATTAGTTGCTGATATCCAG
TTGACGATACCCGGGAGAACAGACCCACCGGGGTCATTCCTAGTCGGTTGACACAGGGAAGGGGC
CTAATCCATGGGGCTAATCCATGGGGAAAATACATGGGGCTAATACATGGGGATACTCGACGCTG
TCGATCCATGAGTTTATGCCGGTACTCAATGCCGGTACTCGATGCTGGTAGGAGAGATCCCAAGA
GGAGATCCAAGAGTTGATGTACTCGATGCTGCTGATCCCACGAGAATATGGCCACGTGGAGATGC
CAGTAATAGCCGATTGACATAGCCTGGTGTATTTGCTTAGAGTCAATTGTTCTTGCTGGGAGTAC
TCGTATTTTCTCACTGCCGAGAGAAGACCCTCATTCCGGGAGGTTCCGATACCCGCTAGCCGATA
GATAGCCGCCCGTTACCAATACCGGGAGCCACTAGTTCATGCAGT
Found at i:491581 original size:13 final size:13
Alignment explanation
Indices: 491558--491614 Score: 69
Period size: 13 Copynumber: 4.3 Consensus size: 13
491548 ACACAGGGAA
*
491558 GGGGCCTAATCCAT
1 GGGG-CTAATACAT
*
491572 GGGGCTAATCCAT
1 GGGGCTAATACAT
**
491585 GGGGAAAATACAT
1 GGGGCTAATACAT
491598 GGGGCTAATACAT
1 GGGGCTAATACAT
491611 GGGG
1 GGGG
491615 ATACTCGACG
Statistics
Matches: 38, Mismatches: 5, Indels: 1
0.86 0.11 0.02
Matches are distributed among these distances:
13 34 0.89
14 4 0.11
ACGTcount: A:0.28, C:0.18, G:0.35, T:0.19
Consensus pattern (13 bp):
GGGGCTAATACAT
Left flanking sequence: Indices 491058 -- 491557
GCCTACAACGTGGATATTGAAATGGATTCGATGTTGATATGGAGGATGTTTAGTTCGATGTTGAT
TGGTGTTGGCGTTGGCAAGGGCAGAGAAGGAAACCACCTACGAGATGGTGGCACTACAGCTTCAG
TTCACCGAACGATATGGAAACATAGTTCCTACCTGTAGACGTTCACTGAACGATACGAAACGCGA
GGTCCTACAGCAACACTTAGAGCTTAATCGAAGGGGAATAATCAAAGGGGAATAAGCCGCAGAGG
TTACTCACAGGGCCTAATCCATGGGGATACACATAGAGCTACACGTAGAGGAGTACTCTCTGAGC
TACAACGTAGAGCTACACAATGCATGAGGTTCGATGAGGTTCGATGAGGTACACGTAGAGCTACG
ATGGATGAGGTTACACGATGATGAGGTCCCGATTAGTTGCTGATATCCAGTTGACGATACCCGGG
AGAACAGACCCACCGGGGTCATTCCTAGTCGGTTGACACAGGGAA
Right flanking sequence: Indices 491615 -- 492114
ATACTCGACGCTGTCGATCCATGAGTTTATGCCGGTACTCAATGCCGGTACTCGATGCTGGTAGG
AGAGATCCCAAGAGGAGATCCAAGAGTTGATGTACTCGATGCTGCTGATCCCACGAGAATATGGC
CACGTGGAGATGCCAGTAATAGCCGATTGACATAGCCTGGTGTATTTGCTTAGAGTCAATTGTTC
TTGCTGGGAGTACTCGTATTTTCTCACTGCCGAGAGAAGACCCTCATTCCGGGAGGTTCCGATAC
CCGCTAGCCGATAGATAGCCGCCCGTTACCAATACCGGGAGCCACTAGTTCATGCAGTCGATGCA
CTCGATACAGGTGGAGATGCCTTCTTTTCTGTTTGTGAACCGATAAGCAGGATGTATTCTTGGCT
GTTTTGGAACCGATAAGGGAGGTCGACGATAGCCAAGAGGTGATCCAAGTGGTGATGCTTGTACT
CAATGATGGTACTCTATGCTTGTACTCCATGGCTTTGACTCTATG
Found at i:491661 original size:13 final size:13
Alignment explanation
Indices: 491643--491677 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
491633 CCATGAGTTT
491643 ATGCCGGTACTCA
1 ATGCCGGTACTCA
*
491656 ATGCCGGTACTCG
1 ATGCCGGTACTCA
*
491669 ATGCTGGTA
1 ATGCCGGTA
491678 GGAGAGATCC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.26
Consensus pattern (13 bp):
ATGCCGGTACTCA
Left flanking sequence: Indices 491143 -- 491642
GCAGAGAAGGAAACCACCTACGAGATGGTGGCACTACAGCTTCAGTTCACCGAACGATATGGAAA
CATAGTTCCTACCTGTAGACGTTCACTGAACGATACGAAACGCGAGGTCCTACAGCAACACTTAG
AGCTTAATCGAAGGGGAATAATCAAAGGGGAATAAGCCGCAGAGGTTACTCACAGGGCCTAATCC
ATGGGGATACACATAGAGCTACACGTAGAGGAGTACTCTCTGAGCTACAACGTAGAGCTACACAA
TGCATGAGGTTCGATGAGGTTCGATGAGGTACACGTAGAGCTACGATGGATGAGGTTACACGATG
ATGAGGTCCCGATTAGTTGCTGATATCCAGTTGACGATACCCGGGAGAACAGACCCACCGGGGTC
ATTCCTAGTCGGTTGACACAGGGAAGGGGCCTAATCCATGGGGCTAATCCATGGGGAAAATACAT
GGGGCTAATACATGGGGATACTCGACGCTGTCGATCCATGAGTTT
Right flanking sequence: Indices 491678 -- 492177
GGAGAGATCCCAAGAGGAGATCCAAGAGTTGATGTACTCGATGCTGCTGATCCCACGAGAATATG
GCCACGTGGAGATGCCAGTAATAGCCGATTGACATAGCCTGGTGTATTTGCTTAGAGTCAATTGT
TCTTGCTGGGAGTACTCGTATTTTCTCACTGCCGAGAGAAGACCCTCATTCCGGGAGGTTCCGAT
ACCCGCTAGCCGATAGATAGCCGCCCGTTACCAATACCGGGAGCCACTAGTTCATGCAGTCGATG
CACTCGATACAGGTGGAGATGCCTTCTTTTCTGTTTGTGAACCGATAAGCAGGATGTATTCTTGG
CTGTTTTGGAACCGATAAGGGAGGTCGACGATAGCCAAGAGGTGATCCAAGTGGTGATGCTTGTA
CTCAATGATGGTACTCTATGCTTGTACTCCATGGCTTTGACTCTATGCCAGTCAGCCAATAGTCA
TCAGTAACAGGAGAGGTACCGATTAACGCTAGCCATGAGGATAAG
Found at i:492094 original size:13 final size:13
Alignment explanation
Indices: 492059--492115 Score: 53
Period size: 13 Copynumber: 4.3 Consensus size: 13
492049 CCAAGTGGTG
*
492059 ATGCTTGTACTCA
1 ATGCTTGTACTCT
* *
492072 ATGATGGTACTCT
1 ATGCTTGTACTCT
*
492085 ATGCTTGTACTCC
1 ATGCTTGTACTCT
492098 ATGGCTT-TGACTCT
1 AT-GCTTGT-ACTCT
492112 ATGC
1 ATGC
492116 CAGTCAGCCA
Statistics
Matches: 35, Mismatches: 7, Indels: 4
0.76 0.15 0.09
Matches are distributed among these distances:
13 25 0.71
14 10 0.29
ACGTcount: A:0.19, C:0.23, G:0.19, T:0.39
Consensus pattern (13 bp):
ATGCTTGTACTCT
Left flanking sequence: Indices 491559 -- 492058
GGGCCTAATCCATGGGGCTAATCCATGGGGAAAATACATGGGGCTAATACATGGGGATACTCGAC
GCTGTCGATCCATGAGTTTATGCCGGTACTCAATGCCGGTACTCGATGCTGGTAGGAGAGATCCC
AAGAGGAGATCCAAGAGTTGATGTACTCGATGCTGCTGATCCCACGAGAATATGGCCACGTGGAG
ATGCCAGTAATAGCCGATTGACATAGCCTGGTGTATTTGCTTAGAGTCAATTGTTCTTGCTGGGA
GTACTCGTATTTTCTCACTGCCGAGAGAAGACCCTCATTCCGGGAGGTTCCGATACCCGCTAGCC
GATAGATAGCCGCCCGTTACCAATACCGGGAGCCACTAGTTCATGCAGTCGATGCACTCGATACA
GGTGGAGATGCCTTCTTTTCTGTTTGTGAACCGATAAGCAGGATGTATTCTTGGCTGTTTTGGAA
CCGATAAGGGAGGTCGACGATAGCCAAGAGGTGATCCAAGTGGTG
Right flanking sequence: Indices 492116 -- 492615
CAGTCAGCCAATAGTCATCAGTAACAGGAGAGGTACCGATTAACGCTAGCCATGAGGATAAGGCC
AACTCACATAGCTTACAGACTTACACAGGGAAGGGGGGCCACCCAACATAGCCAACAGATTCGGC
CCAGGCACCAAGTTGGCTTGGAACAGATTCCACAAAAAACTCTCATTTTCCATTTTCATTTATAG
AAACCTCGTTTTGATCGGGTCGGAGGCATAATCTATCACCGGGACACTTCAAATTTCTTTTATTC
TTTATGAACATAGCCTTTTCCAGATGTTTACCTACTTCTTTTCTTTTGCTCAAACTTCTTTTTAT
GGGGTACAAGGATCTATCATTCGAGCACTTCAAGTAAGGTTTTTATAATAGAAGAATTACATTTC
GTGACGTTTCTCTAGAGCAGGCGGGATGGCATCCATTGCTTTGAGGTTGAGCTTATGCTTGCTGG
GCGGGACGATAGAACCCAAGAGCTGGTCGAAAGAAAGAAGAAACC
Found at i:493683 original size:14 final size:14
Alignment explanation
Indices: 493666--493694 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
493656 TCAAGCAGAC
493666 CTGTTCAATCCAGT
1 CTGTTCAATCCAGT
493680 CTGTTCAATCCAGT
1 CTGTTCAATCCAGT
493694 C
1 C
493695 AATCCAGCTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.21, C:0.31, G:0.14, T:0.34
Consensus pattern (14 bp):
CTGTTCAATCCAGT
Left flanking sequence: Indices 493166 -- 493665
CAAACCCGGCACAGTACGGTACGGTCACGGTACAGCACTAGAGATTAACTACACATGGGTATCCA
ATAAATAGCCCATGCCAACTGGTTGAGACAGCCCATCTAGGGACAGACACAAGCAGGGGTCACGT
TGACAACACTGCGAGGATGTTAGTGAGTGCACTGATTAGGAGTGATTTATTAGATTGATGGAAAA
CATCGGAATGGGGGGTCCACCAGACAACTGCCATCTACCAAAGGGGTGGTACAATGAACGGACGG
ATACAGCACACAGAGGAGGTGGGGCGGGAAAGATTTCAAGAGCGGAAGCGGAAGTGGCTGAAGAT
CGATTAGCGAACAAGAACAGAAAGAGCGGAAGGGAACTAGTGTGTGTGTGAGGGAGGTCACCGAT
AGAGAGATTAAGATGAAGTGTGAGGTGCAACAACCTTACAACTTCTCCATTACCTGGTGCCAACA
GACCAGAGGAGAAATGTTCACCAATGGATAGGAGTTCAAGCAGAC
Right flanking sequence: Indices 493695 -- 494194
AATCCAGCTGTTCAAGCCATTCAAACTCTAGCTATACTTTAATCCCTACCTCAGCCCTCATACTC
ATTCATACAGCCTTGGTACGCCTCCTCATTCAAGTCAAGCTCAGCTTACCTAACCTGTCGAAGGC
GAGGTTGGGTTATCACTTCCGACCGGCCAGGCCAACAACGTTGTGAAACCTATGATACCTTGATC
AGTGCATATCAAAATAGGATATAAAGGGAATATCAAAATGATAATAAACTAAACTCTCCATTGAT
TAATCAGAGCCGGGGTTGCTCATTTACTCAGAGAGCCGGGGAGAAAAAGGAAGGTGGGGATAAGT
CGCCTGGACCGATTGAGAATTCTTCATCGTTGGGTTGTTTCGTAGTCCCGAATAAGAGACAAAAG
CTATAGGCTACGTAATCAACAAAACAAAGGGCCCTTACTTCTTAGGGGCGGAGCCACTCACTATT
CCGATGGTGAGGACCGGTAGGGGCTCGACTGTCAAGGACCCTTTA
Found at i:493708 original size:22 final size:23
Alignment explanation
Indices: 493670--493718 Score: 73
Period size: 22 Copynumber: 2.2 Consensus size: 23
493660 GCAGACCTGT
*
493670 TCAATCCAGTCTGTTCAATCCAG
1 TCAATCCAGTCTGTTCAAGCCAG
*
493693 TCAATCCAG-CTGTTCAAGCCAT
1 TCAATCCAGTCTGTTCAAGCCAG
493715 TCAA
1 TCAA
493719 ACTCTAGCTA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
22 15 0.62
23 9 0.38
ACGTcount: A:0.29, C:0.31, G:0.12, T:0.29
Consensus pattern (23 bp):
TCAATCCAGTCTGTTCAAGCCAG
Left flanking sequence: Indices 493170 -- 493669
CCCGGCACAGTACGGTACGGTCACGGTACAGCACTAGAGATTAACTACACATGGGTATCCAATAA
ATAGCCCATGCCAACTGGTTGAGACAGCCCATCTAGGGACAGACACAAGCAGGGGTCACGTTGAC
AACACTGCGAGGATGTTAGTGAGTGCACTGATTAGGAGTGATTTATTAGATTGATGGAAAACATC
GGAATGGGGGGTCCACCAGACAACTGCCATCTACCAAAGGGGTGGTACAATGAACGGACGGATAC
AGCACACAGAGGAGGTGGGGCGGGAAAGATTTCAAGAGCGGAAGCGGAAGTGGCTGAAGATCGAT
TAGCGAACAAGAACAGAAAGAGCGGAAGGGAACTAGTGTGTGTGTGAGGGAGGTCACCGATAGAG
AGATTAAGATGAAGTGTGAGGTGCAACAACCTTACAACTTCTCCATTACCTGGTGCCAACAGACC
AGAGGAGAAATGTTCACCAATGGATAGGAGTTCAAGCAGACCTGT
Right flanking sequence: Indices 493719 -- 494218
ACTCTAGCTATACTTTAATCCCTACCTCAGCCCTCATACTCATTCATACAGCCTTGGTACGCCTC
CTCATTCAAGTCAAGCTCAGCTTACCTAACCTGTCGAAGGCGAGGTTGGGTTATCACTTCCGACC
GGCCAGGCCAACAACGTTGTGAAACCTATGATACCTTGATCAGTGCATATCAAAATAGGATATAA
AGGGAATATCAAAATGATAATAAACTAAACTCTCCATTGATTAATCAGAGCCGGGGTTGCTCATT
TACTCAGAGAGCCGGGGAGAAAAAGGAAGGTGGGGATAAGTCGCCTGGACCGATTGAGAATTCTT
CATCGTTGGGTTGTTTCGTAGTCCCGAATAAGAGACAAAAGCTATAGGCTACGTAATCAACAAAA
CAAAGGGCCCTTACTTCTTAGGGGCGGAGCCACTCACTATTCCGATGGTGAGGACCGGTAGGGGC
TCGACTGTCAAGGACCCTTTAGGGGGCTCGACTGATAAGGAGAGG
Found at i:498694 original size:14 final size:14
Alignment explanation
Indices: 498675--498709 Score: 70
Period size: 14 Copynumber: 2.5 Consensus size: 14
498665 TTATGTTTAC
498675 CCAGTCCAATCAGT
1 CCAGTCCAATCAGT
498689 CCAGTCCAATCAGT
1 CCAGTCCAATCAGT
498703 CCAGTCC
1 CCAGTCC
498710 CACCAATAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.26, C:0.40, G:0.14, T:0.20
Consensus pattern (14 bp):
CCAGTCCAATCAGT
Left flanking sequence: Indices 498175 -- 498674
CTGAACGCTATGGAACAATCTGTTGATTGTCCCTACCTCCGCTGACCCTTAACGCTACGGAACAA
TCTGTTGATTGTCCCTACTCCAACAACTAGACATAGCGAGAGAGACATGGTTGGTTCATATACGT
TGATTCACCGTGCGACCTCTTGATTTGATTTCGGGCCCGCTAGATTAGATTGATTCGCGGGCTGC
GAGAAAAAAAGAAGTTATGAACCGAACCCCGGGAACGGGTGCACGGAATGACCCCAGACGGACGG
GGGGTGAACGCTTCGAGGGATGCCGTGCTTTTAGTGATACAGAGAGAGATGCCTTATATACGTTA
CACCCAGAGAGAGCATGTGTATTATTTATAGATGCTGCTCGAATCGATTCTAGTTGCTCCCAACA
GATCACAGTGAAACTCAAGTCCTTAGTTCACTCGATCCCACAACGCAACCACTCCACCCATCGTT
ACACACCCATTCATCCACCAGACGCGAGATATTCATTATGTTTAC
Right flanking sequence: Indices 498710 -- 499209
CACCAATAAAACCAGTCCACCAACAGAGAGGGCCTACACAAAGAAACTGCCCACCAACTACTCCA
CTAGCCCAACTAACAACAACTGGTGCTTTCTCCCTTGCTTGCCTTACAACCCACCACACTACAAT
TGGTGCTCCCTTGCTTACGAGCTTGCCTTCCCACCCTTGCCCACCAAACTCCAACCAGTTTAGGT
TTGCTTACTTGGCTTGCCTGGAACCGCCCACCACATGACAACGGGTTATTGCTTGCTTTTACGCT
AGACCCGCTTAACTGGATTTGAGTTCGTTACTTGCATCGTTACTTGCTGGCTGGGAGAAGAAACA
ACGGCTGGTTGTTGAAACCGAGGCCGGGATATGAAATGAAATGAAACGAGCGGGCTGGTCCAAGA
ACTCCCGGCTTGCTGATTGCTGGAGGGTGAGCTGGCGGGGAGAATGAATCCCGGCTTGATGCTTG
ATGCTTGATGCTTAGCTTCTTGAAACGGCTGGCTGGCACCCATCA
Found at i:499165 original size:7 final size:7
Alignment explanation
Indices: 499153--499177 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
499143 ATGAATCCCG
499153 GCTTGAT
1 GCTTGAT
499160 GCTTGAT
1 GCTTGAT
499167 GCTTGAT
1 GCTTGAT
499174 GCTT
1 GCTT
499178 AGCTTCTTGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.12, C:0.16, G:0.28, T:0.44
Consensus pattern (7 bp):
GCTTGAT
Left flanking sequence: Indices 498653 -- 499152
GCGAGATATTCATTATGTTTACCCAGTCCAATCAGTCCAGTCCAATCAGTCCAGTCCCACCAATA
AAACCAGTCCACCAACAGAGAGGGCCTACACAAAGAAACTGCCCACCAACTACTCCACTAGCCCA
ACTAACAACAACTGGTGCTTTCTCCCTTGCTTGCCTTACAACCCACCACACTACAATTGGTGCTC
CCTTGCTTACGAGCTTGCCTTCCCACCCTTGCCCACCAAACTCCAACCAGTTTAGGTTTGCTTAC
TTGGCTTGCCTGGAACCGCCCACCACATGACAACGGGTTATTGCTTGCTTTTACGCTAGACCCGC
TTAACTGGATTTGAGTTCGTTACTTGCATCGTTACTTGCTGGCTGGGAGAAGAAACAACGGCTGG
TTGTTGAAACCGAGGCCGGGATATGAAATGAAATGAAACGAGCGGGCTGGTCCAAGAACTCCCGG
CTTGCTGATTGCTGGAGGGTGAGCTGGCGGGGAGAATGAATCCCG
Right flanking sequence: Indices 499178 -- 499677
AGCTTCTTGAAACGGCTGGCTGGCACCCATCAACGCCACATCGGGCACACCCGCAGTTCACCTTA
CGCCCACCAGGAGAACCTACCTGCTTGAGAGATTGTTGCCCATTGAGATAGATAGAGATTGCTTA
CTTACGCTAATCAGAACTAGGAGGGATGTTATAACCCATAGAACACAGTAACGCCTACCTGCTTA
TCGATTGATGCGAGCTGGATGGATTGCTTTATTGGCTGGATGGCTTGGCTTGCTATTGACTACTC
GCCGGGTGGGGCAGGACATGGATTGCTTTGATGGCTTGACGGCTTTCCCGCTGACTTGCGAAATG
GCTCTTGCTGGCTAGTTGGCTGGGCTTGCTTTTCTCGCTTGCTTGCTGGCTACACCAACCCGGCA
TCCCCAGCCAGTTGGGAGAAAAGGGGAGATAAGGTGCAAAGCCGCTTGTCCCTCCGGGGGCAAGG
TGGATTTTCTTATTTATGAATGCCATTTAAGGTGCGAAGCCGCCA
Found at i:502167 original size:30 final size:30
Alignment explanation
Indices: 502131--502449 Score: 638
Period size: 30 Copynumber: 10.6 Consensus size: 30
502121 GTTGCTCGTT
502131 CCTCTCCTTATCAGTCGAGTCACTAACGTA
1 CCTCTCCTTATCAGTCGAGTCACTAACGTA
502161 CCTCTCCTTATCAGTCGAGTCACTAACGTA
1 CCTCTCCTTATCAGTCGAGTCACTAACGTA
502191 CCTCTCCTTATCAGTCGAGTCACTAACGTA
1 CCTCTCCTTATCAGTCGAGTCACTAACGTA
502221 CCTCTCCTTATCAGTCGAGTCACTAACGTA
1 CCTCTCCTTATCAGTCGAGTCACTAACGTA
502251 CCTCTCCTTATCAGTCGAGTCACTAACGTA
1 CCTCTCCTTATCAGTCGAGTCACTAACGTA
502281 CCTCTCCTTATCAGTCGAGTCACTAACGTA
1 CCTCTCCTTATCAGTCGAGTCACTAACGTA
502311 CCTCTCCTTATCAGTCGAGTCACTAACGTA
1 CCTCTCCTTATCAGTCGAGTCACTAACGTA
502341 CCTCTCCTTATCAGTCGAGTCACTAACGTA
1 CCTCTCCTTATCAGTCGAGTCACTAACGTA
502371 CCTCTCCTTATCAGTCGAGTCACTAACGTA
1 CCTCTCCTTATCAGTCGAGTCACTAACGTA
502401 CCTCTCCTTATCAGTCGAGTCACTAACGTA
1 CCTCTCCTTATCAGTCGAGTCACTAACGTA
502431 CCTCTCCTTATCAGTCGAG
1 CCTCTCCTTATCAGTCGAG
502450 CCCCCTGCCG
Statistics
Matches: 289, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 289 1.00
ACGTcount: A:0.23, C:0.34, G:0.13, T:0.30
Consensus pattern (30 bp):
CCTCTCCTTATCAGTCGAGTCACTAACGTA
Left flanking sequence: Indices 501631 -- 502130
TACCTCTTCCCCTCAAACTCTTTGGAGATCGTGCTGCTGGTAATTCTTTATATATGTAATTACGC
TTTAGCAGACAATGTTGCTATTATATATGTAATTACGTTATCGAAGACCAGCTGATCCCAATTTC
CTGGCTGGAAATAGGGCGTTACAACCATTTCATCATTCTCCGTGTCCCTATCAGCAAGGACGCTT
ATCAACCCATATGAATGAGTGAGTAAGTAGGCTACTTCTCCTTCCTTTCTTACCTTCCTTCTATT
TATATAAGAGAGTTAGTTTAGTTATATTATAGATTGAATAACGAGTCATTCGATCGCTAAGGTCT
TTCAGCTATTCATTATATATGAAATTATCTATGATATTATTGCTTCTACCTCTTTCATTCTTGTG
AATTCACGTATGTAATGCATATTATTTCATTCCTCACATGGTTCCGTACCGTTCCGTCCGTCCGT
TGGACCAAACCATCTCTGAGGATCTGTTTCCGTCCGTTGCTCGTT
Right flanking sequence: Indices 502450 -- 502949
CCCCCTGCCGGGTCCTTGCTTTCCTAACGTCAAGCAAGCACTACGTTCCTTGCACTAGGAAGCGC
AAGCCCCTCCGGGTCCTCTCCCGGTGGTCGAGCAACTAAAGTTCCTTGCTTTCCTAACGTCAAGC
AAGCAAGAAATTTCAATTGACTTATTGGGTGCCCTTCTCAAATAAGTAACTAGCGTTGGTCGAGC
CTGCTGTAGCATCCTCTCCTCTCCTCTCCCTTAGGGTCGAGCACCTAAAGGTCCTCTCCTCTCCT
TATCAGTCGAGCCCCCTAAAGGGTCCTTAACAGTCGAGCATGCTTGCGCATCCTTAACAGTCGAG
CACCTAAAGGTCCTTATCAGTCGAGCCCCCTGTCGGGTCCTTGCTTTCCTAACGTCAAGCAAGCA
CTACGTTCCTTGCACTAGGAAGCGCAAGCCCCTCCGGGTCCTCTCCCGGTGGTCGAGCAACTAAA
GTTCCTTGCTTTCCTAACGTCAAGCAAGCAAGAAATTTCAATTGA
Found at i:502719 original size:35 final size:37
Alignment explanation
Indices: 502661--502736 Score: 95
Period size: 35 Copynumber: 2.1 Consensus size: 37
502651 TAGCATCCTC
**
502661 TCCTCTCCTCTCCCTTAGGGTCGAG-CACCTAAA-GG
1 TCCTCTCCTCTCCCTTACAGTCGAGCCACCTAAAGGG
*
502696 TCCTCTCCTCT-CCTTATCAGTCGAGCCCCCTAAAGGG
1 TCCTCTCCTCTCCCTTA-CAGTCGAGCCACCTAAAGGG
502733 TCCT
1 TCCT
502737 TAACAGTCGA
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
34 5 0.14
35 17 0.49
36 7 0.20
37 6 0.17
ACGTcount: A:0.16, C:0.39, G:0.17, T:0.28
Consensus pattern (37 bp):
TCCTCTCCTCTCCCTTACAGTCGAGCCACCTAAAGGG
Left flanking sequence: Indices 502161 -- 502660
CCTCTCCTTATCAGTCGAGTCACTAACGTACCTCTCCTTATCAGTCGAGTCACTAACGTACCTCT
CCTTATCAGTCGAGTCACTAACGTACCTCTCCTTATCAGTCGAGTCACTAACGTACCTCTCCTTA
TCAGTCGAGTCACTAACGTACCTCTCCTTATCAGTCGAGTCACTAACGTACCTCTCCTTATCAGT
CGAGTCACTAACGTACCTCTCCTTATCAGTCGAGTCACTAACGTACCTCTCCTTATCAGTCGAGT
CACTAACGTACCTCTCCTTATCAGTCGAGCCCCCTGCCGGGTCCTTGCTTTCCTAACGTCAAGCA
AGCACTACGTTCCTTGCACTAGGAAGCGCAAGCCCCTCCGGGTCCTCTCCCGGTGGTCGAGCAAC
TAAAGTTCCTTGCTTTCCTAACGTCAAGCAAGCAAGAAATTTCAATTGACTTATTGGGTGCCCTT
CTCAAATAAGTAACTAGCGTTGGTCGAGCCTGCTGTAGCATCCTC
Right flanking sequence: Indices 502737 -- 503236
TAACAGTCGAGCATGCTTGCGCATCCTTAACAGTCGAGCACCTAAAGGTCCTTATCAGTCGAGCC
CCCTGTCGGGTCCTTGCTTTCCTAACGTCAAGCAAGCACTACGTTCCTTGCACTAGGAAGCGCAA
GCCCCTCCGGGTCCTCTCCCGGTGGTCGAGCAACTAAAGTTCCTTGCTTTCCTAACGTCAAGCAA
GCAAGAAATTTCAATTGACTTATTGGGTGCCCTTCTCAAATAAGTAACTAGCGTTGGTCGAGCCT
GCTGTAGCATCCTCTCCTCTCCTCTCCCTTAGGGTCGAGCACCTAAAGGTCCTCTCCTCTCCTTA
TCAGTCGAGCCCCCTAAAGGGTCCTTAACAGTCGAGCATGCTTGCGCATCCTTAACAGTCGAGCA
CCTAAAGGTCCTTATCAGTCGAGCCCCCTGTCGGGTCCTTGCTTTCCTAACGTCAAGCAAGCACT
ACGTTCCTTGCACTAGGAAGCGCAAGCCCCTCCGGGTCCTTGCCC
Found at i:502744 original size:27 final size:27
Alignment explanation
Indices: 502706--502805 Score: 87
Period size: 27 Copynumber: 3.8 Consensus size: 27
502696 TCCTCTCCTC
*
502706 TCCTTATCAGTCGAGCCCCCTAAAGGG
1 TCCTTAACAGTCGAGCCCCCTAAAGGG
*** *** **
502733 TCCTTAACAGTCGAGCATGCTTGCGCA
1 TCCTTAACAGTCGAGCCCCCTAAAGGG
*
502760 TCCTTAACAGTCGAG-CACCTAAA-GG
1 TCCTTAACAGTCGAGCCCCCTAAAGGG
*
502785 TCCTTATCAGTCGAGCCCCCT
1 TCCTTAACAGTCGAGCCCCCT
502806 GTCGGGTCCT
Statistics
Matches: 53, Mismatches: 19, Indels: 3
0.71 0.25 0.04
Matches are distributed among these distances:
25 14 0.26
26 6 0.11
27 33 0.62
ACGTcount: A:0.23, C:0.33, G:0.20, T:0.24
Consensus pattern (27 bp):
TCCTTAACAGTCGAGCCCCCTAAAGGG
Left flanking sequence: Indices 502206 -- 502705
CGAGTCACTAACGTACCTCTCCTTATCAGTCGAGTCACTAACGTACCTCTCCTTATCAGTCGAGT
CACTAACGTACCTCTCCTTATCAGTCGAGTCACTAACGTACCTCTCCTTATCAGTCGAGTCACTA
ACGTACCTCTCCTTATCAGTCGAGTCACTAACGTACCTCTCCTTATCAGTCGAGTCACTAACGTA
CCTCTCCTTATCAGTCGAGTCACTAACGTACCTCTCCTTATCAGTCGAGCCCCCTGCCGGGTCCT
TGCTTTCCTAACGTCAAGCAAGCACTACGTTCCTTGCACTAGGAAGCGCAAGCCCCTCCGGGTCC
TCTCCCGGTGGTCGAGCAACTAAAGTTCCTTGCTTTCCTAACGTCAAGCAAGCAAGAAATTTCAA
TTGACTTATTGGGTGCCCTTCTCAAATAAGTAACTAGCGTTGGTCGAGCCTGCTGTAGCATCCTC
TCCTCTCCTCTCCCTTAGGGTCGAGCACCTAAAGGTCCTCTCCTC
Right flanking sequence: Indices 502806 -- 503305
GTCGGGTCCTTGCTTTCCTAACGTCAAGCAAGCACTACGTTCCTTGCACTAGGAAGCGCAAGCCC
CTCCGGGTCCTCTCCCGGTGGTCGAGCAACTAAAGTTCCTTGCTTTCCTAACGTCAAGCAAGCAA
GAAATTTCAATTGACTTATTGGGTGCCCTTCTCAAATAAGTAACTAGCGTTGGTCGAGCCTGCTG
TAGCATCCTCTCCTCTCCTCTCCCTTAGGGTCGAGCACCTAAAGGTCCTCTCCTCTCCTTATCAG
TCGAGCCCCCTAAAGGGTCCTTAACAGTCGAGCATGCTTGCGCATCCTTAACAGTCGAGCACCTA
AAGGTCCTTATCAGTCGAGCCCCCTGTCGGGTCCTTGCTTTCCTAACGTCAAGCAAGCACTACGT
TCCTTGCACTAGGAAGCGCAAGCCCCTCCGGGTCCTTGCCCGGTGCGGACAAGCAATAAATTACC
TTGCACTAGGAAGCGCAAGCCCCTCCGGGACCTTGCCCTTCCTAT
Found at i:503069 original size:35 final size:37
Alignment explanation
Indices: 503011--503086 Score: 95
Period size: 35 Copynumber: 2.1 Consensus size: 37
503001 TAGCATCCTC
**
503011 TCCTCTCCTCTCCCTTAGGGTCGAG-CACCTAAA-GG
1 TCCTCTCCTCTCCCTTACAGTCGAGCCACCTAAAGGG
*
503046 TCCTCTCCTCT-CCTTATCAGTCGAGCCCCCTAAAGGG
1 TCCTCTCCTCTCCCTTA-CAGTCGAGCCACCTAAAGGG
503083 TCCT
1 TCCT
503087 TAACAGTCGA
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
34 5 0.14
35 17 0.49
36 7 0.20
37 6 0.17
ACGTcount: A:0.16, C:0.39, G:0.17, T:0.28
Consensus pattern (37 bp):
TCCTCTCCTCTCCCTTACAGTCGAGCCACCTAAAGGG
Left flanking sequence: Indices 502511 -- 503010
GCGCAAGCCCCTCCGGGTCCTCTCCCGGTGGTCGAGCAACTAAAGTTCCTTGCTTTCCTAACGTC
AAGCAAGCAAGAAATTTCAATTGACTTATTGGGTGCCCTTCTCAAATAAGTAACTAGCGTTGGTC
GAGCCTGCTGTAGCATCCTCTCCTCTCCTCTCCCTTAGGGTCGAGCACCTAAAGGTCCTCTCCTC
TCCTTATCAGTCGAGCCCCCTAAAGGGTCCTTAACAGTCGAGCATGCTTGCGCATCCTTAACAGT
CGAGCACCTAAAGGTCCTTATCAGTCGAGCCCCCTGTCGGGTCCTTGCTTTCCTAACGTCAAGCA
AGCACTACGTTCCTTGCACTAGGAAGCGCAAGCCCCTCCGGGTCCTCTCCCGGTGGTCGAGCAAC
TAAAGTTCCTTGCTTTCCTAACGTCAAGCAAGCAAGAAATTTCAATTGACTTATTGGGTGCCCTT
CTCAAATAAGTAACTAGCGTTGGTCGAGCCTGCTGTAGCATCCTC
Right flanking sequence: Indices 503087 -- 503586
TAACAGTCGAGCATGCTTGCGCATCCTTAACAGTCGAGCACCTAAAGGTCCTTATCAGTCGAGCC
CCCTGTCGGGTCCTTGCTTTCCTAACGTCAAGCAAGCACTACGTTCCTTGCACTAGGAAGCGCAA
GCCCCTCCGGGTCCTTGCCCGGTGCGGACAAGCAATAAATTACCTTGCACTAGGAAGCGCAAGCC
CCTCCGGGACCTTGCCCTTCCTATTTCTTCTCTGGCGGCTTCGCACCTTGCCCGATGCGGACAAG
CAGGTAAACCTCCTTGCCTTCCTATTTCTTCTCTGGCGGCTTCGCACCTTGCTTTCCTAACGTCA
AGCAAGCCCCTACCGGTCCTTGCCCGGTGCGGACAAGCAATAAATTACCTTATCTCTTCTATCTA
TTAGGGGGGAAGCAATATAAGGTCCCGGAGCCTATCTAGCTTGACTCAGGCTTTGAGGGTAGGTG
ATTCATAGATAGGTAAGGTGGATGGATTTAGAAATCGTAAACTCA
Found at i:503076 original size:350 final size:350
Alignment explanation
Indices: 502435--503240 Score: 1587
Period size: 350 Copynumber: 2.3 Consensus size: 350
502425 AACGTACCTC
*
502435 TCCTTATCAGTCGAGCCCCCTGCCGGGTCCTTGCTTTCCTAACGTCAAGCAAGCACTACGTTCCT
1 TCCTTATCAGTCGAGCCCCCTGTCGGGTCCTTGCTTTCCTAACGTCAAGCAAGCACTACGTTCCT
502500 TGCACTAGGAAGCGCAAGCCCCTCCGGGTCCTCTCCCGGTGGTCGAGCAACTAAAGTTCCTTGCT
66 TGCACTAGGAAGCGCAAGCCCCTCCGGGTCCTCTCCCGGTGGTCGAGCAACTAAAGTTCCTTGCT
502565 TTCCTAACGTCAAGCAAGCAAGAAATTTCAATTGACTTATTGGGTGCCCTTCTCAAATAAGTAAC
131 TTCCTAACGTCAAGCAAGCAAGAAATTTCAATTGACTTATTGGGTGCCCTTCTCAAATAAGTAAC
502630 TAGCGTTGGTCGAGCCTGCTGTAGCATCCTCTCCTCTCCTCTCCCTTAGGGTCGAGCACCTAAAG
196 TAGCGTTGGTCGAGCCTGCTGTAGCATCCTCTCCTCTCCTCTCCCTTAGGGTCGAGCACCTAAAG
502695 GTCCTCTCCTCTCCTTATCAGTCGAGCCCCCTAAAGGGTCCTTAACAGTCGAGCATGCTTGCGCA
261 GTCCTCTCCTCTCCTTATCAGTCGAGCCCCCTAAAGGGTCCTTAACAGTCGAGCATGCTTGCGCA
502760 TCCTTAACAGTCGAGCACCTAAAGG
326 TCCTTAACAGTCGAGCACCTAAAGG
502785 TCCTTATCAGTCGAGCCCCCTGTCGGGTCCTTGCTTTCCTAACGTCAAGCAAGCACTACGTTCCT
1 TCCTTATCAGTCGAGCCCCCTGTCGGGTCCTTGCTTTCCTAACGTCAAGCAAGCACTACGTTCCT
502850 TGCACTAGGAAGCGCAAGCCCCTCCGGGTCCTCTCCCGGTGGTCGAGCAACTAAAGTTCCTTGCT
66 TGCACTAGGAAGCGCAAGCCCCTCCGGGTCCTCTCCCGGTGGTCGAGCAACTAAAGTTCCTTGCT
502915 TTCCTAACGTCAAGCAAGCAAGAAATTTCAATTGACTTATTGGGTGCCCTTCTCAAATAAGTAAC
131 TTCCTAACGTCAAGCAAGCAAGAAATTTCAATTGACTTATTGGGTGCCCTTCTCAAATAAGTAAC
502980 TAGCGTTGGTCGAGCCTGCTGTAGCATCCTCTCCTCTCCTCTCCCTTAGGGTCGAGCACCTAAAG
196 TAGCGTTGGTCGAGCCTGCTGTAGCATCCTCTCCTCTCCTCTCCCTTAGGGTCGAGCACCTAAAG
503045 GTCCTCTCCTCTCCTTATCAGTCGAGCCCCCTAAAGGGTCCTTAACAGTCGAGCATGCTTGCGCA
261 GTCCTCTCCTCTCCTTATCAGTCGAGCCCCCTAAAGGGTCCTTAACAGTCGAGCATGCTTGCGCA
503110 TCCTTAACAGTCGAGCACCTAAAGG
326 TCCTTAACAGTCGAGCACCTAAAGG
503135 TCCTTATCAGTCGAGCCCCCTGTCGGGTCCTTGCTTTCCTAACGTCAAGCAAGCACTACGTTCCT
1 TCCTTATCAGTCGAGCCCCCTGTCGGGTCCTTGCTTTCCTAACGTCAAGCAAGCACTACGTTCCT
503200 TGCACTAGGAAGCGCAAGCCCCTCCGGGTCCT-TGCCCGGTG
66 TGCACTAGGAAGCGCAAGCCCCTCCGGGTCCTCT-CCCGGTG
503241 CGGACAAGCA
Statistics
Matches: 454, Mismatches: 1, Indels: 2
0.99 0.00 0.00
Matches are distributed among these distances:
349 1 0.00
350 453 1.00
ACGTcount: A:0.21, C:0.32, G:0.21, T:0.26
Consensus pattern (350 bp):
TCCTTATCAGTCGAGCCCCCTGTCGGGTCCTTGCTTTCCTAACGTCAAGCAAGCACTACGTTCCT
TGCACTAGGAAGCGCAAGCCCCTCCGGGTCCTCTCCCGGTGGTCGAGCAACTAAAGTTCCTTGCT
TTCCTAACGTCAAGCAAGCAAGAAATTTCAATTGACTTATTGGGTGCCCTTCTCAAATAAGTAAC
TAGCGTTGGTCGAGCCTGCTGTAGCATCCTCTCCTCTCCTCTCCCTTAGGGTCGAGCACCTAAAG
GTCCTCTCCTCTCCTTATCAGTCGAGCCCCCTAAAGGGTCCTTAACAGTCGAGCATGCTTGCGCA
TCCTTAACAGTCGAGCACCTAAAGG
Left flanking sequence: Indices 501935 -- 502434
GTCATTCGATCGCTAAGGTCTTTCAGCTATTCATTATATATGAAATTATCTATGATATTATTGCT
TCTACCTCTTTCATTCTTGTGAATTCACGTATGTAATGCATATTATTTCATTCCTCACATGGTTC
CGTACCGTTCCGTCCGTCCGTTGGACCAAACCATCTCTGAGGATCTGTTTCCGTCCGTTGCTCGT
TCCTCTCCTTATCAGTCGAGTCACTAACGTACCTCTCCTTATCAGTCGAGTCACTAACGTACCTC
TCCTTATCAGTCGAGTCACTAACGTACCTCTCCTTATCAGTCGAGTCACTAACGTACCTCTCCTT
ATCAGTCGAGTCACTAACGTACCTCTCCTTATCAGTCGAGTCACTAACGTACCTCTCCTTATCAG
TCGAGTCACTAACGTACCTCTCCTTATCAGTCGAGTCACTAACGTACCTCTCCTTATCAGTCGAG
TCACTAACGTACCTCTCCTTATCAGTCGAGTCACTAACGTACCTC
Right flanking sequence: Indices 503241 -- 503740
CGGACAAGCAATAAATTACCTTGCACTAGGAAGCGCAAGCCCCTCCGGGACCTTGCCCTTCCTAT
TTCTTCTCTGGCGGCTTCGCACCTTGCCCGATGCGGACAAGCAGGTAAACCTCCTTGCCTTCCTA
TTTCTTCTCTGGCGGCTTCGCACCTTGCTTTCCTAACGTCAAGCAAGCCCCTACCGGTCCTTGCC
CGGTGCGGACAAGCAATAAATTACCTTATCTCTTCTATCTATTAGGGGGGAAGCAATATAAGGTC
CCGGAGCCTATCTAGCTTGACTCAGGCTTTGAGGGTAGGTGATTCATAGATAGGTAAGGTGGATG
GATTTAGAAATCGTAAACTCAAATTATTCTATACCATCCATTCGCCGGCGCGGGACCCACTTGTA
TTGGTTCCCCCCCCCCTATCTAGATCCTATCGAGAATTGATTGGGGAATCGGAACAAGGAATCCT
GACTCTGGAACGATGGATGGCGTAGGAATGGGGGACGCAAGGCTT
Done.