123.fas.2.7.7.80.10.50.500.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NC_039746
Parameters: 2 7 7 80 10 50 500
Length:  1191054

Tables:   1   2   3   4   5   6   7   8   

This is table  3  of  8  ( 912 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
294077--294160	23	3.4	23	81	15	114	48	2	23	25	1.63
297350--297384	9	3.9	9	96	0	52	28	11	48	11	1.74
298219--298257	13	2.9	14	85	14	55	28	0	28	43	1.55
298322--298348	12	2.2	12	100	0	54	44	22	0	33	1.53
298695--298728	13	2.6	13	100	0	68	20	47	0	32	1.51
298712--298799	48	1.9	45	84	13	117	17	51	7	23	1.71
299557--299605	22	2.2	22	96	0	89	51	8	14	26	1.70
303142--303222	40	2.0	40	92	0	135	27	14	16	41	1.87
304369--304475	53	2.0	53	100	0	214	26	20	34	18	1.96
306155--306183	13	2.1	14	93	6	51	24	27	17	31	1.97
309229--309284	23	2.3	25	84	6	71	26	16	23	33	1.95
311912--311981	23	3.1	23	70	13	65	27	25	15	31	1.96
312429--312537	35	3.1	35	97	0	200	10	44	20	24	1.82
316438--316611	32	5.4	33	76	11	191	27	18	39	14	1.90
316440--316625	64	2.9	64	99	0	363	27	18	39	13	1.89
319103--319153	9	5.9	9	81	9	70	13	35	9	41	1.78
320304--320372	25	2.6	27	90	4	106	21	20	30	27	1.98
320305--320372	27	2.6	25	90	4	100	22	20	30	26	1.98
320394--320499	50	2.1	50	98	1	205	32	33	13	21	1.92
320720--320769	24	2.0	25	92	3	84	22	22	26	30	1.99
321307--321333	11	2.5	11	100	0	54	37	0	62	0	0.95
321367--321447	30	2.7	30	100	0	162	20	34	13	30	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
328956--328997	21	2.0	21	90	0	66	26	23	19	30	1.98
333421--333460	20	2.0	20	100	0	80	35	40	15	10	1.80
335464--335528	24	2.7	24	100	0	130	26	24	26	23	2.00
335380--335604	124	1.8	124	99	0	441	23	20	28	27	1.99
335512--335670	76	2.1	76	100	0	318	22	18	30	28	1.97
335631--335712	27	3.0	27	94	0	146	21	30	20	26	1.98
337556--337659	34	3.3	34	69	20	116	51	0	34	12	1.46
337566--337659	26	3.3	26	65	21	71	52	1	34	12	1.47
337532--337690	60	2.7	60	96	0	291	49	1	35	14	1.52
337650--337703	26	2.1	25	86	3	72	46	1	37	14	1.56
339047--339105	27	2.2	27	100	0	118	10	50	10	28	1.68
339057--339127	27	2.6	27	84	0	79	16	38	16	28	1.91
344936--344994	27	2.2	27	100	0	118	10	50	10	28	1.68
344946--345016	27	2.6	27	84	0	79	16	38	16	28	1.91
347307--347509	90	2.3	89	89	5	320	22	17	31	29	1.97
347587--347642	27	2.1	26	93	3	94	30	8	51	8	1.64
349373--349526	75	2.1	75	96	0	281	18	19	31	30	1.96
351641--351692	20	2.5	20	96	3	95	3	50	19	26	1.65
351681--351738	27	2.1	27	100	0	116	10	50	10	29	1.70
351690--351760	27	2.6	27	84	0	79	16	38	16	28	1.91
351983--352053	24	3.0	24	93	4	126	26	25	25	22	2.00
352123--352173	25	2.0	25	96	0	93	29	27	19	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
352224--352277	25	2.2	25	89	0	81	29	27	16	25	1.97
352258--352500	113	2.2	113	100	0	486	18	26	27	27	1.98
352503--352599	49	2.0	49	100	0	194	16	14	40	28	1.88
353431--353909	240	2.0	240	100	0	958	27	21	21	30	1.98
354083--354152	24	2.8	25	84	4	106	27	30	21	21	1.98
355244--355289	23	2.0	23	91	0	74	34	17	43	4	1.69
355458--355563	32	3.3	32	95	0	185	11	39	18	30	1.86
356942--356987	22	2.1	22	84	11	60	10	43	6	39	1.66
357229--357278	26	1.9	26	91	0	82	28	28	22	22	1.99
368339--368376	20	1.9	20	94	0	67	28	18	0	52	1.45
369539--369563	8	3.1	8	100	0	50	0	24	40	36	1.55
370230--370314	34	2.5	34	96	3	154	9	35	23	31	1.87
371371--371403	12	2.8	12	100	0	66	24	33	0	42	1.55
373795--374029	118	2.0	118	100	0	470	18	24	24	32	1.97
374588--374694	33	3.2	33	100	0	214	8	43	20	27	1.80
375393--375417	12	2.1	12	100	0	50	28	0	40	32	1.57
375528--375598	19	3.6	19	74	7	79	36	22	15	25	1.93
382503--382536	17	2.0	17	100	0	68	17	23	35	23	1.95
382503--382543	17	2.6	16	92	7	66	19	21	34	24	1.97
383096--383127	14	2.3	14	94	0	55	21	12	25	40	1.88
383089--383132	23	1.9	23	100	0	88	20	13	25	40	1.89
386412--386439	14	2.0	14	100	0	56	28	21	14	35	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
387023--387116	31	3.1	30	73	14	93	24	19	21	35	1.96
390592--390640	19	2.6	19	100	0	98	18	28	32	20	1.96
390604--390645	19	2.5	16	85	14	50	21	26	28	23	1.99
392408--392436	15	1.9	15	100	0	58	41	6	41	10	1.66
392684--392741	28	2.0	29	96	3	109	37	32	10	18	1.85
392689--392735	14	3.4	14	71	11	51	36	29	10	23	1.89
396917--396965	19	2.6	19	70	0	53	32	28	26	12	1.92
396981--397049	24	3.1	24	72	20	85	33	17	31	17	1.93
396999--397037	19	2.1	19	90	0	60	33	15	33	17	1.92
398076--398148	36	2.0	36	100	0	146	8	31	43	16	1.77
404057--404106	26	1.9	26	100	0	100	30	26	20	24	1.98
404132--404182	24	2.1	24	96	0	93	25	27	23	23	2.00
405625--405675	24	2.1	24	96	0	93	7	19	39	33	1.81
407874--407907	13	2.6	13	95	0	59	38	29	14	17	1.90
425263--425311	26	1.9	26	88	12	75	32	10	44	12	1.75
428698--428754	27	2.2	27	93	6	100	26	14	49	10	1.75
430707--430901	94	2.1	95	86	10	276	26	32	17	23	1.97
437798--437851	17	3.2	16	84	7	63	24	25	24	25	2.00
437806--437859	17	3.3	17	87	10	69	24	29	18	27	1.98
448891--449142	118	2.2	112	85	14	333	22	32	17	27	1.97
461216--461269	26	2.0	26	89	3	81	20	24	31	24	1.98
461363--461434	33	2.1	35	85	10	96	29	13	37	19	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
462486--462513	12	2.3	12	100	0	56	50	0	7	42	1.30
465430--465499	36	1.9	36	91	5	115	25	18	40	15	1.90
466194--466219	13	2.0	13	100	0	52	30	23	15	30	1.95
466949--466990	14	2.9	14	89	3	57	33	0	33	33	1.58
466955--466996	14	3.1	14	89	3	59	35	0	30	33	1.58
468480--468511	2	17.0	2	87	12	50	50	0	0	50	1.00
468480--468511	7	4.2	8	84	15	50	50	0	0	50	1.00
468477--468522	16	2.8	16	87	9	65	47	0	2	50	1.13
468478--468517	16	2.3	18	91	8	66	50	0	0	50	1.00
471051--471197	65	2.2	67	91	3	235	34	12	16	36	1.87
472556--472618	33	2.0	31	84	12	83	36	15	20	26	1.93
475967--476001	15	2.3	15	85	0	52	14	14	31	40	1.86
476028--476089	28	2.3	27	85	2	79	12	17	32	37	1.88
480892--480937	17	2.8	17	78	21	53	43	4	30	21	1.72
481248--481276	15	1.9	15	100	0	58	34	13	20	31	1.92
481560--481806	120	2.1	119	98	1	485	13	23	32	31	1.93
488306--488349	23	1.9	23	90	0	70	29	22	20	27	1.99
488758--488791	17	2.0	17	100	0	68	29	17	23	29	1.97
491277--491307	14	2.2	14	94	0	53	48	6	29	16	1.70
491406--491432	10	2.7	10	100	0	54	22	7	40	29	1.81
491558--491614	13	4.3	13	86	2	69	28	17	35	19	1.94
491643--491677	13	2.7	13	90	0	52	20	25	28	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
492059--492115	13	4.3	13	76	8	53	19	22	19	38	1.93
493666--493694	14	2.1	14	100	0	58	20	31	13	34	1.92
493670--493718	22	2.2	23	88	3	73	28	30	12	28	1.93
498675--498709	14	2.5	14	100	0	70	25	40	14	20	1.90
499153--499177	7	3.6	7	100	0	50	12	16	28	44	1.83
502131--502449	30	10.6	30	100	0	638	22	33	13	30	1.93
502661--502736	35	2.1	37	83	9	95	15	39	17	27	1.90
502706--502805	27	3.8	27	70	4	87	23	33	20	24	1.97
503011--503086	35	2.1	37	83	9	95	15	39	17	27	1.90
502435--503240	350	2.3	350	99	0	1587	20	32	20	25	1.97

Tables:   1   2   3   4   5   6   7   8