123.fas.2.7.7.80.10.50.500.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NC_044153
Parameters: 2 7 7 80 10 50 500
Length:  684857

Tables:   1   2   

This is table  2  of  2  ( 202 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
436491--436558	22	3.1	22	78	0	82	44	10	11	33	1.75
436866--436941	27	2.8	27	100	0	152	51	3	42	2	1.34
438397--438486	22	4.1	22	88	2	128	37	15	6	40	1.74
439519--439564	22	2.1	22	83	0	56	47	6	15	30	1.70
439803--439858	26	2.2	26	87	3	78	37	17	30	14	1.90
440576--440604	15	1.9	15	100	0	58	41	6	31	20	1.79
441807--441872	32	2.1	32	100	0	132	39	19	19	21	1.93
448764--448793	15	2.0	15	100	0	60	33	13	20	33	1.91
452893--452934	21	2.0	21	85	0	57	38	38	4	19	1.73
480295--480378	42	2.0	42	97	0	159	10	33	27	28	1.90
493930--494015	43	2.0	43	84	4	111	4	37	16	41	1.69
494441--494506	32	2.1	32	100	0	132	21	19	19	39	1.93
494441--494518	32	2.4	32	91	4	104	21	21	19	37	1.95
495709--495737	15	1.9	15	100	0	58	20	31	6	41	1.79
496455--496510	26	2.2	25	87	3	76	14	30	17	37	1.90
497827--497916	22	4.1	22	88	2	128	40	6	15	37	1.74
498441--498487	21	2.3	21	88	3	69	36	10	25	27	1.89
499372--499447	27	2.8	27	100	0	152	2	42	3	51	1.34
499755--499822	22	3.1	22	78	0	82	33	11	10	44	1.75
502278--502353	34	2.2	34	83	4	100	42	18	18	21	1.90
504307--504370	32	2.0	32	100	0	128	12	28	6	53	1.62
504311--504379	32	2.2	32	92	5	113	11	28	7	52	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
508808--508910	24	4.4	24	92	3	140	13	24	11	50	1.75
508808--508945	48	3.1	45	82	8	149	12	23	10	53	1.68
508808--508938	24	5.8	22	86	5	122	12	24	10	51	1.71
508826--508945	42	2.7	43	84	7	143	11	23	9	55	1.64
517708--517749	21	2.0	21	90	0	66	38	28	9	23	1.86
519357--519390	17	2.0	17	94	0	59	47	14	29	8	1.75
519402--519485	42	2.0	42	97	0	159	10	33	27	28	1.90
519670--519725	28	2.0	28	100	0	112	7	35	21	35	1.81
521791--521855	22	3.0	22	86	0	94	41	9	12	36	1.75
539288--539373	44	2.0	44	95	0	154	18	34	18	27	1.95
545567--545666	35	2.9	35	100	0	200	8	41	19	32	1.80
545567--545654	17	5.0	18	63	15	58	7	40	20	30	1.81
556575--556708	38	3.5	38	88	3	171	20	30	16	32	1.95
558934--558971	18	2.1	18	100	0	76	50	15	0	34	1.45
558957--559002	23	2.0	23	86	0	65	60	6	6	26	1.46
570013--570046	17	2.0	17	88	0	50	29	20	17	32	1.96
572426--572560	44	3.2	44	65	14	122	36	16	24	22	1.94
572427--572649	81	2.8	81	86	5	289	33	17	24	24	1.96
574188--574272	42	2.0	42	97	0	161	28	28	32	10	1.90
577900--577957	30	1.9	31	85	3	82	32	18	29	18	1.96
583082--583108	12	2.2	12	100	0	54	29	11	14	44	1.80
610120--610227	34	3.2	35	70	25	113	60	11	22	6	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
610120--610272	68	2.3	68	97	2	292	61	11	21	5	1.50
610441--610482	21	2.0	21	90	0	66	35	28	9	26	1.88
610492--610551	18	3.7	18	75	25	78	38	5	26	30	1.78
610495--610551	30	1.9	30	100	0	114	38	5	24	31	1.78
610492--610559	18	4.1	18	75	21	67	39	7	25	27	1.82
610627--610679	19	2.6	20	85	11	72	18	13	16	50	1.77
613604--613669	32	2.1	32	100	0	132	21	19	19	39	1.93
613604--613681	32	2.4	32	91	4	104	21	21	19	37	1.95
614872--614900	15	1.9	15	100	0	58	20	31	6	41	1.79
615618--615673	26	2.2	25	87	3	76	14	30	17	37	1.90
616990--617079	22	4.1	22	88	2	128	40	6	15	37	1.74
617604--617650	21	2.3	21	88	3	69	36	10	25	27	1.89
618535--618610	27	2.8	27	100	0	152	2	42	3	51	1.34
618918--618985	22	3.1	22	78	0	82	33	11	10	44	1.75
621441--621516	34	2.2	34	83	4	100	42	18	18	21	1.90
621574--621637	22	2.9	22	85	0	92	42	9	10	37	1.73
633994--634022	15	1.9	15	100	0	58	27	27	10	34	1.89
640208--640273	32	2.1	32	100	0	132	21	19	19	39	1.93
640208--640285	32	2.4	32	91	4	104	21	21	19	37	1.95
641476--641504	15	1.9	15	100	0	58	20	31	6	41	1.79
642222--642277	26	2.2	25	87	3	76	14	30	17	37	1.90
643594--643683	22	4.1	22	88	2	128	40	6	15	37	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
644208--644254	21	2.3	21	88	3	69	36	10	25	27	1.89
645139--645214	27	2.8	27	100	0	152	2	42	3	51	1.34
645522--645589	22	3.1	22	78	0	82	33	11	10	44	1.75
648045--648120	34	2.2	34	83	4	100	42	18	18	21	1.90
648128--648174	22	2.1	22	88	0	67	44	8	12	34	1.73
649425--649496	25	2.9	25	100	0	144	34	27	12	25	1.92
675876--675941	32	2.1	32	100	0	132	21	19	19	39	1.93
675876--675953	32	2.4	32	91	4	104	21	21	19	37	1.95
677144--677172	15	1.9	15	100	0	58	20	31	6	41	1.79
677890--677945	26	2.2	25	87	3	76	14	30	17	37	1.90
679262--679351	22	4.1	22	88	2	128	40	6	15	37	1.74
679876--679922	21	2.3	21	88	3	69	36	10	25	27	1.89
680807--680882	27	2.8	27	100	0	152	2	42	3	51	1.34
681190--681257	22	3.1	22	78	0	82	33	11	10	44	1.75
683713--683788	34	2.2	34	83	4	100	42	18	18	21	1.90
683796--683842	22	2.1	22	88	0	67	44	8	12	34	1.73

Tables:   1   2

The End!