Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_044153
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 684857
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.28
File 1 of 2
Found at i:6229 original size:39 final size:39
Alignment explanation
Indices: 6175--6249 Score: 123
Period size: 39 Copynumber: 1.9 Consensus size: 39
6165 TACCAGCCAA
6175 GCCCCCTCTCCTTCCTTACAATCAAGCAAGTGGCTTTCC
1 GCCCCCTCTCCTTCCTTACAATCAAGCAAGTGGCTTTCC
* * *
6214 GCCCCCTCTCCTTCCTTATAGTCAAGCGAGTGGCTT
1 GCCCCCTCTCCTTCCTTACAATCAAGCAAGTGGCTT
6250 AAAGCCCCCT
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 33 1.00
ACGTcount: A:0.16, C:0.39, G:0.16, T:0.29
Consensus pattern (39 bp):
GCCCCCTCTCCTTCCTTACAATCAAGCAAGTGGCTTTCC
Left flanking sequence: Indices 5675 -- 6174
TCTCTTCGACTGAACCTAAAGGAGACTTCGATCATTCAACTTTAGCTTCTGAAGGAGGAATCATG
TCACTTGGAATTTCGGAAAGTGAATCCTCTCTTTCAGATCCTGGCCTTGGTAGAACTTGTCTTTG
ATTGGGATTTCGATTGAAAAGATGTTAGGCCGGTTCCTCATGTGCCTAAGAAGCCGAGGCAATCT
CGATTGAAGCCAATTCCAAATTTGCCTACTCAATCTTATTTATAGAAATAGCACTCGATCAAAGG
GGAGCATAAGCAAGTTCAGTGGTAGAAACCTCTGTAATCGATGGGAACCTCGAAGCTGTCTGGGG
CAGGAGAAAACTCATATGTTGCACTGCCCCAGCATCAACTGGTACAAGGAGGAGGCACGATAGCG
AAGATCAATCCATCTCAATCTACAAAAAGCATTGCCTTGGGCATGCAACCCAAAAAGATAGAAAG
ACCGCTCGCTCGAAGAAAACTCTTTTAGAGCCTGGTACCAGCCAA
Right flanking sequence: Indices 6250 -- 6749
AAAGCCCCCTCGACTCGGCAACAAGAGTCGGTTATGGAATAGCCTTTTAGTCGGCTTTCTCGTTC
TTAAGGACTTTCTGGCCGGTAGGCTTTATAGCGGACCTGCCTTGCTGACAGCTAGGATATTACAT
ATATAGTTGCGCTTGCCTTCACTTAGAAACTCTACGCCCCCTATTAGAGTAAGGCATGCTCTCGA
AACTAGATTCACTCGTTCTTGTCTCCAGCGATTAACCTATTCCAGAGCAGTCTGGTGATTAGCCT
ATCCCGCACTACTCGAAGCCTTCGTAAACTCATTGTCGGTTTCTATCGTAGTGGAGGTTGCTGTG
AGGAGATCCTTGTGCCAGTGAAGATTGCTTCCAATGATCGGGAAATCAAAAAGAAAAAATGGCTC
TATTTCCAACACTCCGGATAAGCGGAAGGATCTATGTCCATCCCCAACTTCCTTTCAATCCACAT
CGGAAAATTGTGGCTTTCTCTACTGGGAGTCATCAAAGGAGGAAT
Found at i:6257 original size:39 final size:39
Alignment explanation
Indices: 6173--6260 Score: 122
Period size: 39 Copynumber: 2.3 Consensus size: 39
6163 GGTACCAGCC
*
6173 AAGCCCCCTCTCCTTCCTTACAATCAAGCAAGTGGCTTT
1 AAGCCCCCTCTCCTTCCTTACAATCAAGCAAGTGGCTTA
** * * *
6212 CCGCCCCCTCTCCTTCCTTATAGTCAAGCGAGTGGCTTA
1 AAGCCCCCTCTCCTTCCTTACAATCAAGCAAGTGGCTTA
6251 AAGCCCCCTC
1 AAGCCCCCTC
6261 GACTCGGCAA
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
39 41 1.00
ACGTcount: A:0.19, C:0.40, G:0.15, T:0.26
Consensus pattern (39 bp):
AAGCCCCCTCTCCTTCCTTACAATCAAGCAAGTGGCTTA
Left flanking sequence: Indices 5673 -- 6172
GATCTCTTCGACTGAACCTAAAGGAGACTTCGATCATTCAACTTTAGCTTCTGAAGGAGGAATCA
TGTCACTTGGAATTTCGGAAAGTGAATCCTCTCTTTCAGATCCTGGCCTTGGTAGAACTTGTCTT
TGATTGGGATTTCGATTGAAAAGATGTTAGGCCGGTTCCTCATGTGCCTAAGAAGCCGAGGCAAT
CTCGATTGAAGCCAATTCCAAATTTGCCTACTCAATCTTATTTATAGAAATAGCACTCGATCAAA
GGGGAGCATAAGCAAGTTCAGTGGTAGAAACCTCTGTAATCGATGGGAACCTCGAAGCTGTCTGG
GGCAGGAGAAAACTCATATGTTGCACTGCCCCAGCATCAACTGGTACAAGGAGGAGGCACGATAG
CGAAGATCAATCCATCTCAATCTACAAAAAGCATTGCCTTGGGCATGCAACCCAAAAAGATAGAA
AGACCGCTCGCTCGAAGAAAACTCTTTTAGAGCCTGGTACCAGCC
Right flanking sequence: Indices 6261 -- 6760
GACTCGGCAACAAGAGTCGGTTATGGAATAGCCTTTTAGTCGGCTTTCTCGTTCTTAAGGACTTT
CTGGCCGGTAGGCTTTATAGCGGACCTGCCTTGCTGACAGCTAGGATATTACATATATAGTTGCG
CTTGCCTTCACTTAGAAACTCTACGCCCCCTATTAGAGTAAGGCATGCTCTCGAAACTAGATTCA
CTCGTTCTTGTCTCCAGCGATTAACCTATTCCAGAGCAGTCTGGTGATTAGCCTATCCCGCACTA
CTCGAAGCCTTCGTAAACTCATTGTCGGTTTCTATCGTAGTGGAGGTTGCTGTGAGGAGATCCTT
GTGCCAGTGAAGATTGCTTCCAATGATCGGGAAATCAAAAAGAAAAAATGGCTCTATTTCCAACA
CTCCGGATAAGCGGAAGGATCTATGTCCATCCCCAACTTCCTTTCAATCCACATCGGAAAATTGT
GGCTTTCTCTACTGGGAGTCATCAAAGGAGGAATGGGCATACGCT
Found at i:13884 original size:36 final size:37
Alignment explanation
Indices: 13798--13977 Score: 206
Period size: 36 Copynumber: 4.9 Consensus size: 37
13788 CGAAAGTCAC
**
13798 CTCCTCTCCAACCTTATAGTCAAGCAAGTGGCTTTCA
1 CTCCTCTCCTTCCTTATAGTCAAGCAAGTGGCTTTCA
* * *
13835 CTCCTCTCTTTCCTTATAGTCAAG-AGAGTTGC-TTCG
1 CTCCTCTCCTTCCTTATAGTCAAGCA-AGTGGCTTTCA
*
13871 CTCCTTTCCTTCCTTATAGTCAAGCAAGTGGCTTTCA
1 CTCCTCTCCTTCCTTATAGTCAAGCAAGTGGCTTTCA
* * *
13908 CTCCTCTCTTTCCTTATAGTCAAG-AGAGTTGC-TTCG
1 CTCCTCTCCTTCCTTATAGTCAAGCA-AGTGGCTTTCA
* * *
13944 CTCCTTTCCTTCCTTACAATCAAGCAAGTGGCTT
1 CTCCTCTCCTTCCTTATAGTCAAGCAAGTGGCTT
13978 AGAGCTCCTG
Statistics
Matches: 119, Mismatches: 18, Indels: 12
0.80 0.12 0.08
Matches are distributed among these distances:
36 60 0.50
37 59 0.50
ACGTcount: A:0.19, C:0.30, G:0.14, T:0.36
Consensus pattern (37 bp):
CTCCTCTCCTTCCTTATAGTCAAGCAAGTGGCTTTCA
Left flanking sequence: Indices 13298 -- 13797
TTTCACAAAGGTAGAGGGATTTGATAATCGATAGGACTGGTGAATTTTCTCTTCCCTCGTAGGAA
GTCGGTCTCCCTAATACATCAATATGGTAGATAGATCGGGTAGAAGATCAGCCGCTAATCCGCTA
CTCTCGCTGTGTTCGATCGGCTTCAAAGCTTCTTCACTTTTAGCGCTTAGCGCCTCCACTGATGC
CTGAATGCTACTTTCGTCTACGTATGGGTTAGATTAGAGAAGCAATCCTCCTTCTATCCTATCAA
CTAAGCTCTTCTTCGTCCTTCCCCCTCTGAAGAAGCCGGAGGTCAAGAATCCGTCTATTCAACAA
CATCCCTCTTGGGCAAGCAGCTTCTTTTTCGAAATTGTATAGTGTTCAATAAAAGTTGATGCAAT
AGAAGCTCTTGATGCAATATCTGGTGGTGAAGGCATTCCAGCAAGAGCTCTTACTGTAACAGAAC
TAGGACCGTCAACTCCAACTGTCCTTATAGATAGGCGAAAGTCAC
Right flanking sequence: Indices 13978 -- 14477
AGAGCTCCTGCGGATGACTTTTTGTCTTACGACACGGCATGGTAATTGATTGAGTGCGCTTTCCT
TTCTCAATGGCACAGCAAAAGCACCATATTTCGGGTTTGGATATCATAGGAAATGGGGCACTATA
GAAAGGTTTTCCAAGTGAACACCCGATGCTACGTCAAAAGCATGAATTTTTGCTGTCGAATGAAA
CTACTAAATACTAAATGTAGGAATTCAAACTGGAAAATTCACGAACCAAGGTTCCGCGTATCACG
TTTTTTCAAGAAGATTGGGACTCTCAGGGAATAGATACAATCGTAGTAGTATATACCCTATCCAT
ATAAGGCATCTTCCGGGCCAGAGGCCCCCCTTCTCTTGAGGTAGCATTTCCAAAATTCGTTGAAC
TGGAATCATCTGTTTAGGCACCTGCTTCAAATGGAGCTTTCAGAAAGCCCTTCGCTAAGGGCGAA
GGTTTTTCTATGCTACATGCCCTAGGTCTGACCGCCTACCTTTTG
Found at i:13887 original size:73 final size:73
Alignment explanation
Indices: 13809--13977 Score: 320
Period size: 73 Copynumber: 2.3 Consensus size: 73
13799 TCCTCTCCAA
13809 CCTTATAGTCAAGCAAGTGGCTTTCACTCCTCTCTTTCCTTATAGTCAAGAGAGTTGCTTCGCTC
1 CCTTATAGTCAAGCAAGTGGCTTTCACTCCTCTCTTTCCTTATAGTCAAGAGAGTTGCTTCGCTC
13874 CTTTCCTT
66 CTTTCCTT
13882 CCTTATAGTCAAGCAAGTGGCTTTCACTCCTCTCTTTCCTTATAGTCAAGAGAGTTGCTTCGCTC
1 CCTTATAGTCAAGCAAGTGGCTTTCACTCCTCTCTTTCCTTATAGTCAAGAGAGTTGCTTCGCTC
13947 CTTTCCTT
66 CTTTCCTT
* *
13955 CCTTACAATCAAGCAAGTGGCTT
1 CCTTATAGTCAAGCAAGTGGCTT
13978 AGAGCTCCTG
Statistics
Matches: 94, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
73 94 1.00
ACGTcount: A:0.20, C:0.28, G:0.15, T:0.37
Consensus pattern (73 bp):
CCTTATAGTCAAGCAAGTGGCTTTCACTCCTCTCTTTCCTTATAGTCAAGAGAGTTGCTTCGCTC
CTTTCCTT
Left flanking sequence: Indices 13309 -- 13808
TAGAGGGATTTGATAATCGATAGGACTGGTGAATTTTCTCTTCCCTCGTAGGAAGTCGGTCTCCC
TAATACATCAATATGGTAGATAGATCGGGTAGAAGATCAGCCGCTAATCCGCTACTCTCGCTGTG
TTCGATCGGCTTCAAAGCTTCTTCACTTTTAGCGCTTAGCGCCTCCACTGATGCCTGAATGCTAC
TTTCGTCTACGTATGGGTTAGATTAGAGAAGCAATCCTCCTTCTATCCTATCAACTAAGCTCTTC
TTCGTCCTTCCCCCTCTGAAGAAGCCGGAGGTCAAGAATCCGTCTATTCAACAACATCCCTCTTG
GGCAAGCAGCTTCTTTTTCGAAATTGTATAGTGTTCAATAAAAGTTGATGCAATAGAAGCTCTTG
ATGCAATATCTGGTGGTGAAGGCATTCCAGCAAGAGCTCTTACTGTAACAGAACTAGGACCGTCA
ACTCCAACTGTCCTTATAGATAGGCGAAAGTCACCTCCTCTCCAA
Right flanking sequence: Indices 13978 -- 14477
AGAGCTCCTGCGGATGACTTTTTGTCTTACGACACGGCATGGTAATTGATTGAGTGCGCTTTCCT
TTCTCAATGGCACAGCAAAAGCACCATATTTCGGGTTTGGATATCATAGGAAATGGGGCACTATA
GAAAGGTTTTCCAAGTGAACACCCGATGCTACGTCAAAAGCATGAATTTTTGCTGTCGAATGAAA
CTACTAAATACTAAATGTAGGAATTCAAACTGGAAAATTCACGAACCAAGGTTCCGCGTATCACG
TTTTTTCAAGAAGATTGGGACTCTCAGGGAATAGATACAATCGTAGTAGTATATACCCTATCCAT
ATAAGGCATCTTCCGGGCCAGAGGCCCCCCTTCTCTTGAGGTAGCATTTCCAAAATTCGTTGAAC
TGGAATCATCTGTTTAGGCACCTGCTTCAAATGGAGCTTTCAGAAAGCCCTTCGCTAAGGGCGAA
GGTTTTTCTATGCTACATGCCCTAGGTCTGACCGCCTACCTTTTG
Found at i:28828 original size:42 final size:42
Alignment explanation
Indices: 28724--28845 Score: 182
Period size: 37 Copynumber: 3.0 Consensus size: 42
28714 TCATGCGTCC
28724 CAACAAGCAGCGGATGAGCGCACTAGCGCGAAAGCCGTTGCG
1 CAACAAGCAGCGGATGAGCGCACTAGCGCGAAAGCCGTTGCG
* *
28766 CAACAAGCA----ACG-GCTCACTAGCGCGAAAGCCGTTGCG
1 CAACAAGCAGCGGATGAGCGCACTAGCGCGAAAGCCGTTGCG
*
28803 CAACAAGCAGCGGATGAGCGCACTAGCGTGAAAGCCGTTGCG
1 CAACAAGCAGCGGATGAGCGCACTAGCGCGAAAGCCGTTGCG
28845 C
1 C
28846 GTTAGTCACG
Statistics
Matches: 70, Mismatches: 5, Indels: 10
0.82 0.06 0.12
Matches are distributed among these distances:
37 33 0.47
38 2 0.03
41 2 0.03
42 33 0.47
ACGTcount: A:0.29, C:0.30, G:0.31, T:0.11
Consensus pattern (42 bp):
CAACAAGCAGCGGATGAGCGCACTAGCGCGAAAGCCGTTGCG
Left flanking sequence: Indices 28224 -- 28723
ACCCAACCGCCCTGGCGTATGTTTCCGAATCAACTGCATCGTAAGCTGCTATAGCTCTTGCCAAC
TACCCTGGAAATGAAAAAGAAACTCTATCCTCAACCCTTCCAATCCTTAGTTCATGGTGGCAACT
TCACCCCGTGCATCCTTTGGTTGTGAGCCCCGCCTAGAGGGAGGCGCTAAGGGAAGGGCGTAGCG
TTAAATCTGCCTCGCCTTGAAGACGTTTGGAACCCTTCTGTTGAGCACCAATTGGAAATCCAATC
TGACTTCTAAAACGGAAGTGAGCACAGGTGAGAGGACCCCACTTTCCCGCATCCCTCTCCCCACG
AGCAGAACACCAGAGATGCACAGCACGTGGGCCTTGTCTAACGAACGACGACTTTCGATTCTTCA
CTTCAAGGAGTAGAGTCGCTGCCCAACCCTACCTATATAAAAGAAAAAGAAGAGATCACTAGGTC
CCGAGCAATTCTACCTTCTTTCCATTATCCAACGCTCATGCGTCC
Right flanking sequence: Indices 28846 -- 29345
GTTAGTCACGCGCATCCGTTTTCTTGCTGCATCCATTTTCTTGCTGTCACGCGCATACGTTTTCT
TGCTCCCACTCTTTTAAAGCTTTCAATAAAGCCTTCTTAGCTGTGGAAGCAGCAACCGGTCTGTT
GGAAAGTTCCTGCATAAGTTGTCGGATCCTCAAAAAAAAGCTTTTCTGGGGACGCGCTGTTCAAG
TCGAGTTTCCTTATTGTCCCTTCCAAGACATCCCTTCTAACTTCCCTATTTCCAAAGGAAGAAAG
AAAGGTCGAAAGCTCTCTTTCGAGAGCCTCTTTTGTTGGGCTCGGCGGCCCCAATCGCAAGGCTA
GATCCAGATCCCCCATAGCCTGTTCAGCATGAGGAATGGCTGGCGGAGCATCAGGATTTCCTTGA
TCCATTCTCAAGATCTCAGGCCCCCCTACCAACTCGCTCCCGGTGACATTAGGCACTACCTCGTT
TGGGCTGGAAATAATATAACTGTCCATAAAACAAATCATTGCTGT
Found at i:28877 original size:17 final size:17
Alignment explanation
Indices: 28857--28891 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
28847 TTAGTCACGC
*
28857 GCATCCGTTTTCTTGCT
1 GCATCCATTTTCTTGCT
28874 GCATCCATTTTCTTGCT
1 GCATCCATTTTCTTGCT
28891 G
1 G
28892 TCACGCGCAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.09, C:0.29, G:0.17, T:0.46
Consensus pattern (17 bp):
GCATCCATTTTCTTGCT
Left flanking sequence: Indices 28357 -- 28856
CCCCGTGCATCCTTTGGTTGTGAGCCCCGCCTAGAGGGAGGCGCTAAGGGAAGGGCGTAGCGTTA
AATCTGCCTCGCCTTGAAGACGTTTGGAACCCTTCTGTTGAGCACCAATTGGAAATCCAATCTGA
CTTCTAAAACGGAAGTGAGCACAGGTGAGAGGACCCCACTTTCCCGCATCCCTCTCCCCACGAGC
AGAACACCAGAGATGCACAGCACGTGGGCCTTGTCTAACGAACGACGACTTTCGATTCTTCACTT
CAAGGAGTAGAGTCGCTGCCCAACCCTACCTATATAAAAGAAAAAGAAGAGATCACTAGGTCCCG
AGCAATTCTACCTTCTTTCCATTATCCAACGCTCATGCGTCCCAACAAGCAGCGGATGAGCGCAC
TAGCGCGAAAGCCGTTGCGCAACAAGCAACGGCTCACTAGCGCGAAAGCCGTTGCGCAACAAGCA
GCGGATGAGCGCACTAGCGTGAAAGCCGTTGCGCGTTAGTCACGC
Right flanking sequence: Indices 28892 -- 29391
TCACGCGCATACGTTTTCTTGCTCCCACTCTTTTAAAGCTTTCAATAAAGCCTTCTTAGCTGTGG
AAGCAGCAACCGGTCTGTTGGAAAGTTCCTGCATAAGTTGTCGGATCCTCAAAAAAAAGCTTTTC
TGGGGACGCGCTGTTCAAGTCGAGTTTCCTTATTGTCCCTTCCAAGACATCCCTTCTAACTTCCC
TATTTCCAAAGGAAGAAAGAAAGGTCGAAAGCTCTCTTTCGAGAGCCTCTTTTGTTGGGCTCGGC
GGCCCCAATCGCAAGGCTAGATCCAGATCCCCCATAGCCTGTTCAGCATGAGGAATGGCTGGCGG
AGCATCAGGATTTCCTTGATCCATTCTCAAGATCTCAGGCCCCCCTACCAACTCGCTCCCGGTGA
CATTAGGCACTACCTCGTTTGGGCTGGAAATAATATAACTGTCCATAAAACAAATCATTGCTGTG
TTTTCGGTCTCGTTGAATAAAATGCAAACGAAATGACTTACTAGC
Found at i:32258 original size:17 final size:17
Alignment explanation
Indices: 32236--32271 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
32226 GTAGCTCGCC
*
32236 TAAAAGGAGAGGAACTT
1 TAAAAGGAAAGGAACTT
*
32253 TAAAAGGAAAGGAGCTT
1 TAAAAGGAAAGGAACTT
32270 TA
1 TA
32272 GCTGCTCGAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.47, C:0.06, G:0.28, T:0.19
Consensus pattern (17 bp):
TAAAAGGAAAGGAACTT
Left flanking sequence: Indices 31736 -- 32235
AGCGCTTTTTCGCTTTCTTCAGGATTTGGCCCGAACTGTTCGGCAGATTCCCACGCGTTACGCAC
CCGTTCGCCACTTTGTTCTCAACTCTTCTCACCTCCTGGGCGAGACAAGCTACCTTTAGCTAGGA
GCCTCTTTTCCTTCTGCCCAGCTCCCCGAAAACAACGTTCGACTTGCATGTGTTAAGCATATAGC
TAGCGTTCCTTCTGAGCCAGGATCAAACTCTTCTTTTGACTATGATTGGGCCCTGCAGTGGTAGA
ACCTGGTGAACCGGGCGTACTACTTTCCAACCTTCTCTTCACTTTTCTTCTCTTAATCAATTTCG
AGTTTTCAAATCTATTATAAGCGTAGCAGTTCTAAGACTTCTTTCTACGCAACGATTTCTTCTTC
TCTTAATCAATTTCGAGTTTTCAAATCTATTATTATAACAAGGCACGGAACGCCTTTAAAAAGGA
GAGTTGCGTAGCAGTTCGAATTGAACTATTCCACGGTAGCTCGCC
Right flanking sequence: Indices 32272 -- 32771
GCTGCTCGACCGTAGGGAGAGGTATTTTAATCACTCTCCTTAACAGTCGAGTCGTGTTGAGTTTG
AACTCGAACTTATAGTAAGAGTTTTCTTAGAACAGCGTAGCAACGAATTTCACTATTCCACAGTG
ATCGGAGGGGATAGAAAGCAAAAGCGATTCCCGTATTAGCTCATCAACTCGACTTACAGGAGAGG
CGTGGAAAGACACTTCCTTGACTATAAAGTTTGGAAAGGAGTGAAACAGCTTGAACGAATTAACG
AGGCGTGTTGACCGTTTGAATTTTCCTGCGTTGGAAAGGCGTTCCAATGTGAGAAGGGCGAGAAG
CCACTTGACTATAAACTTCGAACTGCTACGCAACTAATAACGAATGCGAGAGGAACGAAGTCACT
TGACTTACAGGAAAGGAACTGAAAGTCGCTCGACCGTAGGGAGAGGAGTGTTGGCAACTTGACTA
TTCTATTCGAACAGCGTAGCAACTATACTTAGAACTGCGAAGCAA
Found at i:32779 original size:23 final size:23
Alignment explanation
Indices: 32735--32780 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
32725 TATTCTATTC
* *
32735 GAACAGCGTAGCAACTATACTTA
1 GAACAGCGAAGCAACTAGACTTA
* *
32758 GAACTGCGAAGCAACTCGACTTA
1 GAACAGCGAAGCAACTAGACTTA
32781 CAGGAAAACG
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.37, C:0.24, G:0.20, T:0.20
Consensus pattern (23 bp):
GAACAGCGAAGCAACTAGACTTA
Left flanking sequence: Indices 32235 -- 32734
CTAAAAGGAGAGGAACTTTAAAAGGAAAGGAGCTTTAGCTGCTCGACCGTAGGGAGAGGTATTTT
AATCACTCTCCTTAACAGTCGAGTCGTGTTGAGTTTGAACTCGAACTTATAGTAAGAGTTTTCTT
AGAACAGCGTAGCAACGAATTTCACTATTCCACAGTGATCGGAGGGGATAGAAAGCAAAAGCGAT
TCCCGTATTAGCTCATCAACTCGACTTACAGGAGAGGCGTGGAAAGACACTTCCTTGACTATAAA
GTTTGGAAAGGAGTGAAACAGCTTGAACGAATTAACGAGGCGTGTTGACCGTTTGAATTTTCCTG
CGTTGGAAAGGCGTTCCAATGTGAGAAGGGCGAGAAGCCACTTGACTATAAACTTCGAACTGCTA
CGCAACTAATAACGAATGCGAGAGGAACGAAGTCACTTGACTTACAGGAAAGGAACTGAAAGTCG
CTCGACCGTAGGGAGAGGAGTGTTGGCAACTTGACTATTCTATTC
Right flanking sequence: Indices 32781 -- 33280
CAGGAAAACGGAGCGGAAAGCCGTTTGAACTCGAATACGCAACTCTCCTTACAATCTTATAGGAA
AGCGAGCGGTCAACTATCCTGTAAGTAAGAGTTTTCTTAGAACAGCTACGCGCCTCTCCTTTTTA
TGGCTTCGCTCCTCTCCTTCTCCTTCTCCTTATAGCTGAGTTATTAGAGCAGTGTAACGGCTGCA
GCTAAGCTTCTTAAAGAGATGAGTTACTGCAGCTACTTGTTTGTGTTAACTACCTCTTCCCCTTG
TTGTTGTCTTATTTTGCATATAGGTGGGACATCAAAATGTGATTTAGAATTGCTTTCTTAGAGTG
AAAATAGGGTTGTCTACTTTTCCCCCTATATGGGACAGAAAGGAGTTGAAAGCTGCAATGGAACA
AGCAACGGGACCAAGCAGCGGATGAGCGCACTAGCGCGAGAAAGTCAAGATGTATGTTGTCCTAG
CTTTTACCTTTATCGAGATTGGCTTAGTGGATAAATACACATAAA
Found at i:33548 original size:20 final size:20
Alignment explanation
Indices: 33520--33594 Score: 80
Period size: 20 Copynumber: 3.6 Consensus size: 20
33510 TATGAAATGA
*
33520 GAACTGCTACGCTTCAATTC
1 GAACAGCTACGCTTCAATTC
* *
33540 GAACAGCTACGCAACTCTC-CTTA
1 GAACAGCTACG---CT-TCAATTC
33563 GAACAGCTACGCTTCAATTC
1 GAACAGCTACGCTTCAATTC
33583 GAACAGCTACGC
1 GAACAGCTACGC
33595 AACAAATAGA
Statistics
Matches: 45, Mismatches: 5, Indels: 10
0.75 0.08 0.17
Matches are distributed among these distances:
19 2 0.04
20 26 0.58
23 15 0.33
24 2 0.04
ACGTcount: A:0.29, C:0.32, G:0.16, T:0.23
Consensus pattern (20 bp):
GAACAGCTACGCTTCAATTC
Left flanking sequence: Indices 33020 -- 33519
GTTAACTACCTCTTCCCCTTGTTGTTGTCTTATTTTGCATATAGGTGGGACATCAAAATGTGATT
TAGAATTGCTTTCTTAGAGTGAAAATAGGGTTGTCTACTTTTCCCCCTATATGGGACAGAAAGGA
GTTGAAAGCTGCAATGGAACAAGCAACGGGACCAAGCAGCGGATGAGCGCACTAGCGCGAGAAAG
TCAAGATGTATGTTGTCCTAGCTTTTACCTTTATCGAGATTGGCTTAGTGGATAAATACACATAA
AGATCAAACTTCAAGTCTTGATTGAAACTGAAAGTCAAGATTTGATATTTAGTTATATAGTAGTA
GAAGATAGTAAGCTCTCTAGCTCATGAGGAAGATTAACAGAGTTGATTCCGCCCAATAGCGCTTT
GCGAAGCCGGTCCCCGGACGTTAACGGCCAACTTCCTCATTCGCTAGATGCTTGCTTCATATGCT
TAACACAGGGAAGTTGTTTATAATACGATTTTAAATATGAAATGA
Right flanking sequence: Indices 33595 -- 34094
AACAAATAGAACTAATACGCTTCTAATAGTTCTAATTCTAATACGCTTCTAAGAGTTCAAACAGG
AGTGGAAAGCAGAACAGCGTAGCTTGCCTTAGCGCATACGTTTTCTTGCTCCTTCCGAGGAGTGA
AAACAACTTTCCAGTTAAGGGAAGGAGTTCCAAGCCACTTGCGTTGTAAGGAGAGGAGCTGAAAA
GCAAAAAGACTGGAAGGAGAGGGCGACTGAAAAGGAGGCTCGACCTACAGGGAGAGGGCGACTGA
AAAGGAGGCTCGACCTACAGGGAGAGGGCGACTGAAAAGGAGGCTCGACCTACAGGGAGAGGGAA
AAGGCAAGGAACTTTCAACAGGCATGGTACGAGAGGAAAGAGACCAGCCTTAGGCCTCTTCAGCT
AATAGATGCGTCAAAGACCGTTGCCAGCTACTGCTAGTCGCAAACAAGCCCTTCCCTTCTGGGCT
AGGAGTGAAATGCCCTCGATCGACTCGGGGCTAAAAGCCCTAATG
Found at i:33606 original size:20 final size:20
Alignment explanation
Indices: 33561--33606 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
33551 CAACTCTCCT
** *
33561 TAGAACAGCTACGCTTCAAT
1 TAGAACAGCTACGCAACAAA
*
33581 TCGAACAGCTACGCAACAAA
1 TAGAACAGCTACGCAACAAA
33601 TAGAAC
1 TAGAAC
33607 TAATACGCTT
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.41, C:0.26, G:0.15, T:0.17
Consensus pattern (20 bp):
TAGAACAGCTACGCAACAAA
Left flanking sequence: Indices 33061 -- 33560
TAGGTGGGACATCAAAATGTGATTTAGAATTGCTTTCTTAGAGTGAAAATAGGGTTGTCTACTTT
TCCCCCTATATGGGACAGAAAGGAGTTGAAAGCTGCAATGGAACAAGCAACGGGACCAAGCAGCG
GATGAGCGCACTAGCGCGAGAAAGTCAAGATGTATGTTGTCCTAGCTTTTACCTTTATCGAGATT
GGCTTAGTGGATAAATACACATAAAGATCAAACTTCAAGTCTTGATTGAAACTGAAAGTCAAGAT
TTGATATTTAGTTATATAGTAGTAGAAGATAGTAAGCTCTCTAGCTCATGAGGAAGATTAACAGA
GTTGATTCCGCCCAATAGCGCTTTGCGAAGCCGGTCCCCGGACGTTAACGGCCAACTTCCTCATT
CGCTAGATGCTTGCTTCATATGCTTAACACAGGGAAGTTGTTTATAATACGATTTTAAATATGAA
ATGAGAACTGCTACGCTTCAATTCGAACAGCTACGCAACTCTCCT
Right flanking sequence: Indices 33607 -- 34106
TAATACGCTTCTAATAGTTCTAATTCTAATACGCTTCTAAGAGTTCAAACAGGAGTGGAAAGCAG
AACAGCGTAGCTTGCCTTAGCGCATACGTTTTCTTGCTCCTTCCGAGGAGTGAAAACAACTTTCC
AGTTAAGGGAAGGAGTTCCAAGCCACTTGCGTTGTAAGGAGAGGAGCTGAAAAGCAAAAAGACTG
GAAGGAGAGGGCGACTGAAAAGGAGGCTCGACCTACAGGGAGAGGGCGACTGAAAAGGAGGCTCG
ACCTACAGGGAGAGGGCGACTGAAAAGGAGGCTCGACCTACAGGGAGAGGGAAAAGGCAAGGAAC
TTTCAACAGGCATGGTACGAGAGGAAAGAGACCAGCCTTAGGCCTCTTCAGCTAATAGATGCGTC
AAAGACCGTTGCCAGCTACTGCTAGTCGCAAACAAGCCCTTCCCTTCTGGGCTAGGAGTGAAATG
CCCTCGATCGACTCGGGGCTAAAAGCCCTAATGAAGAAAAAGAAT
Found at i:33826 original size:18 final size:18
Alignment explanation
Indices: 33803--33896 Score: 70
Period size: 18 Copynumber: 5.3 Consensus size: 18
33793 AAAAGACTGG
33803 AAGGAGAGGGCGACTGAA
1 AAGGAGAGGGCGACTGAA
** *
33821 AAGGAG-GCTCGACCT-AC
1 AAGGAGAGGGCGA-CTGAA
*
33838 AGGGAGAGGGCGACTGAA
1 AAGGAGAGGGCGACTGAA
** *
33856 AAGGAG-GCTCGACCT-AC
1 AAGGAGAGGGCGA-CTGAA
*
33873 AGGGAGAGGGCGACTGAA
1 AAGGAGAGGGCGACTGAA
33891 AAGGAG
1 AAGGAG
33897 GCTCGACCTA
Statistics
Matches: 54, Mismatches: 16, Indels: 12
0.66 0.20 0.15
Matches are distributed among these distances:
17 24 0.44
18 30 0.56
ACGTcount: A:0.34, C:0.17, G:0.41, T:0.07
Consensus pattern (18 bp):
AAGGAGAGGGCGACTGAA
Left flanking sequence: Indices 33303 -- 33802
GAAACTGAAAGTCAAGATTTGATATTTAGTTATATAGTAGTAGAAGATAGTAAGCTCTCTAGCTC
ATGAGGAAGATTAACAGAGTTGATTCCGCCCAATAGCGCTTTGCGAAGCCGGTCCCCGGACGTTA
ACGGCCAACTTCCTCATTCGCTAGATGCTTGCTTCATATGCTTAACACAGGGAAGTTGTTTATAA
TACGATTTTAAATATGAAATGAGAACTGCTACGCTTCAATTCGAACAGCTACGCAACTCTCCTTA
GAACAGCTACGCTTCAATTCGAACAGCTACGCAACAAATAGAACTAATACGCTTCTAATAGTTCT
AATTCTAATACGCTTCTAAGAGTTCAAACAGGAGTGGAAAGCAGAACAGCGTAGCTTGCCTTAGC
GCATACGTTTTCTTGCTCCTTCCGAGGAGTGAAAACAACTTTCCAGTTAAGGGAAGGAGTTCCAA
GCCACTTGCGTTGTAAGGAGAGGAGCTGAAAAGCAAAAAGACTGG
Right flanking sequence: Indices 33897 -- 34396
GCTCGACCTACAGGGAGAGGGAAAAGGCAAGGAACTTTCAACAGGCATGGTACGAGAGGAAAGAG
ACCAGCCTTAGGCCTCTTCAGCTAATAGATGCGTCAAAGACCGTTGCCAGCTACTGCTAGTCGCA
AACAAGCCCTTCCCTTCTGGGCTAGGAGTGAAATGCCCTCGATCGACTCGGGGCTAAAAGCCCTA
ATGAAGAAAAAGAATTGTCCTAAGATTGCCTACTTAATCCGGTACTTTCTTCTTCCCGGAAGGTT
TTGTCCGGATTTCTTACTATCTTCGGTACTGCTTTTGTTTTGAGAAGAATGAATCTCAAGTTTCA
TCCTCAGGTTCGGTAGGGGGCGTAGGAACGGATAGCGCTCTTAGTTAGCTTAGGAGCGGAGGTAC
GAGACAAAAAGGGGAGTTTCCCTCGACTAAGCAGTTTCCACTAGACCTTTGGCTAATAGTTTAGT
TGTTCCCAGAGGAATTCAATCTGGGCAGCTAGAAAAGGAGAGGGG
Found at i:33833 original size:17 final size:17
Alignment explanation
Indices: 33813--33903 Score: 60
Period size: 17 Copynumber: 5.2 Consensus size: 17
33803 AAGGAGAGGG
33813 CGACTGAAAAGGAGGCT
1 CGACTGAAAAGGAGGCT
* * **
33830 CGACCT-ACAGGGAGAGGG
1 CGA-CTGAAAAGGAG-GCT
33848 CGACTGAAAAGGAGGCT
1 CGACTGAAAAGGAGGCT
* * **
33865 CGACCT-ACAGGGAGAGGG
1 CGA-CTGAAAAGGAG-GCT
33883 CGACTGAAAAGGAGGCT
1 CGACTGAAAAGGAGGCT
33900 CGAC
1 CGAC
33904 CTACAGGGAG
Statistics
Matches: 52, Mismatches: 16, Indels: 12
0.65 0.20 0.15
Matches are distributed among these distances:
17 28 0.54
18 24 0.46
ACGTcount: A:0.32, C:0.21, G:0.38, T:0.09
Consensus pattern (17 bp):
CGACTGAAAAGGAGGCT
Left flanking sequence: Indices 33313 -- 33812
GTCAAGATTTGATATTTAGTTATATAGTAGTAGAAGATAGTAAGCTCTCTAGCTCATGAGGAAGA
TTAACAGAGTTGATTCCGCCCAATAGCGCTTTGCGAAGCCGGTCCCCGGACGTTAACGGCCAACT
TCCTCATTCGCTAGATGCTTGCTTCATATGCTTAACACAGGGAAGTTGTTTATAATACGATTTTA
AATATGAAATGAGAACTGCTACGCTTCAATTCGAACAGCTACGCAACTCTCCTTAGAACAGCTAC
GCTTCAATTCGAACAGCTACGCAACAAATAGAACTAATACGCTTCTAATAGTTCTAATTCTAATA
CGCTTCTAAGAGTTCAAACAGGAGTGGAAAGCAGAACAGCGTAGCTTGCCTTAGCGCATACGTTT
TCTTGCTCCTTCCGAGGAGTGAAAACAACTTTCCAGTTAAGGGAAGGAGTTCCAAGCCACTTGCG
TTGTAAGGAGAGGAGCTGAAAAGCAAAAAGACTGGAAGGAGAGGG
Right flanking sequence: Indices 33904 -- 34403
CTACAGGGAGAGGGAAAAGGCAAGGAACTTTCAACAGGCATGGTACGAGAGGAAAGAGACCAGCC
TTAGGCCTCTTCAGCTAATAGATGCGTCAAAGACCGTTGCCAGCTACTGCTAGTCGCAAACAAGC
CCTTCCCTTCTGGGCTAGGAGTGAAATGCCCTCGATCGACTCGGGGCTAAAAGCCCTAATGAAGA
AAAAGAATTGTCCTAAGATTGCCTACTTAATCCGGTACTTTCTTCTTCCCGGAAGGTTTTGTCCG
GATTTCTTACTATCTTCGGTACTGCTTTTGTTTTGAGAAGAATGAATCTCAAGTTTCATCCTCAG
GTTCGGTAGGGGGCGTAGGAACGGATAGCGCTCTTAGTTAGCTTAGGAGCGGAGGTACGAGACAA
AAAGGGGAGTTTCCCTCGACTAAGCAGTTTCCACTAGACCTTTGGCTAATAGTTTAGTTGTTCCC
AGAGGAATTCAATCTGGGCAGCTAGAAAAGGAGAGGGGCGGTGTG
Found at i:33847 original size:35 final size:35
Alignment explanation
Indices: 33805--33917 Score: 226
Period size: 35 Copynumber: 3.2 Consensus size: 35
33795 AAGACTGGAA
33805 GGAGAGGGCGACTGAAAAGGAGGCTCGACCTACAG
1 GGAGAGGGCGACTGAAAAGGAGGCTCGACCTACAG
33840 GGAGAGGGCGACTGAAAAGGAGGCTCGACCTACAG
1 GGAGAGGGCGACTGAAAAGGAGGCTCGACCTACAG
33875 GGAGAGGGCGACTGAAAAGGAGGCTCGACCTACAG
1 GGAGAGGGCGACTGAAAAGGAGGCTCGACCTACAG
33910 GGAGAGGG
1 GGAGAGGG
33918 AAAAGGCAAG
Statistics
Matches: 78, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 78 1.00
ACGTcount: A:0.31, C:0.19, G:0.42, T:0.08
Consensus pattern (35 bp):
GGAGAGGGCGACTGAAAAGGAGGCTCGACCTACAG
Left flanking sequence: Indices 33305 -- 33804
AACTGAAAGTCAAGATTTGATATTTAGTTATATAGTAGTAGAAGATAGTAAGCTCTCTAGCTCAT
GAGGAAGATTAACAGAGTTGATTCCGCCCAATAGCGCTTTGCGAAGCCGGTCCCCGGACGTTAAC
GGCCAACTTCCTCATTCGCTAGATGCTTGCTTCATATGCTTAACACAGGGAAGTTGTTTATAATA
CGATTTTAAATATGAAATGAGAACTGCTACGCTTCAATTCGAACAGCTACGCAACTCTCCTTAGA
ACAGCTACGCTTCAATTCGAACAGCTACGCAACAAATAGAACTAATACGCTTCTAATAGTTCTAA
TTCTAATACGCTTCTAAGAGTTCAAACAGGAGTGGAAAGCAGAACAGCGTAGCTTGCCTTAGCGC
ATACGTTTTCTTGCTCCTTCCGAGGAGTGAAAACAACTTTCCAGTTAAGGGAAGGAGTTCCAAGC
CACTTGCGTTGTAAGGAGAGGAGCTGAAAAGCAAAAAGACTGGAA
Right flanking sequence: Indices 33918 -- 34417
AAAAGGCAAGGAACTTTCAACAGGCATGGTACGAGAGGAAAGAGACCAGCCTTAGGCCTCTTCAG
CTAATAGATGCGTCAAAGACCGTTGCCAGCTACTGCTAGTCGCAAACAAGCCCTTCCCTTCTGGG
CTAGGAGTGAAATGCCCTCGATCGACTCGGGGCTAAAAGCCCTAATGAAGAAAAAGAATTGTCCT
AAGATTGCCTACTTAATCCGGTACTTTCTTCTTCCCGGAAGGTTTTGTCCGGATTTCTTACTATC
TTCGGTACTGCTTTTGTTTTGAGAAGAATGAATCTCAAGTTTCATCCTCAGGTTCGGTAGGGGGC
GTAGGAACGGATAGCGCTCTTAGTTAGCTTAGGAGCGGAGGTACGAGACAAAAAGGGGAGTTTCC
CTCGACTAAGCAGTTTCCACTAGACCTTTGGCTAATAGTTTAGTTGTTCCCAGAGGAATTCAATC
TGGGCAGCTAGAAAAGGAGAGGGGCGGTGTGTACAAGGCCCTGGA
Found at i:33913 original size:17 final size:17
Alignment explanation
Indices: 33823--33913 Score: 60
Period size: 17 Copynumber: 5.2 Consensus size: 17
33813 CGACTGAAAA
33823 GGAGGCTCGACCTACAG
1 GGAGGCTCGACCTACAG
** * *
33840 GGAGAGGGCGA-CTGAAAA
1 GGAG-GCTCGACCT-ACAG
33858 GGAGGCTCGACCTACAG
1 GGAGGCTCGACCTACAG
** * *
33875 GGAGAGGGCGA-CTGAAAA
1 GGAG-GCTCGACCT-ACAG
33893 GGAGGCTCGACCTACAG
1 GGAGGCTCGACCTACAG
33910 GGAG
1 GGAG
33914 AGGGAAAAGG
Statistics
Matches: 52, Mismatches: 16, Indels: 12
0.65 0.20 0.15
Matches are distributed among these distances:
17 28 0.54
18 24 0.46
ACGTcount: A:0.30, C:0.21, G:0.41, T:0.09
Consensus pattern (17 bp):
GGAGGCTCGACCTACAG
Left flanking sequence: Indices 33323 -- 33822
GATATTTAGTTATATAGTAGTAGAAGATAGTAAGCTCTCTAGCTCATGAGGAAGATTAACAGAGT
TGATTCCGCCCAATAGCGCTTTGCGAAGCCGGTCCCCGGACGTTAACGGCCAACTTCCTCATTCG
CTAGATGCTTGCTTCATATGCTTAACACAGGGAAGTTGTTTATAATACGATTTTAAATATGAAAT
GAGAACTGCTACGCTTCAATTCGAACAGCTACGCAACTCTCCTTAGAACAGCTACGCTTCAATTC
GAACAGCTACGCAACAAATAGAACTAATACGCTTCTAATAGTTCTAATTCTAATACGCTTCTAAG
AGTTCAAACAGGAGTGGAAAGCAGAACAGCGTAGCTTGCCTTAGCGCATACGTTTTCTTGCTCCT
TCCGAGGAGTGAAAACAACTTTCCAGTTAAGGGAAGGAGTTCCAAGCCACTTGCGTTGTAAGGAG
AGGAGCTGAAAAGCAAAAAGACTGGAAGGAGAGGGCGACTGAAAA
Right flanking sequence: Indices 33914 -- 34413
AGGGAAAAGGCAAGGAACTTTCAACAGGCATGGTACGAGAGGAAAGAGACCAGCCTTAGGCCTCT
TCAGCTAATAGATGCGTCAAAGACCGTTGCCAGCTACTGCTAGTCGCAAACAAGCCCTTCCCTTC
TGGGCTAGGAGTGAAATGCCCTCGATCGACTCGGGGCTAAAAGCCCTAATGAAGAAAAAGAATTG
TCCTAAGATTGCCTACTTAATCCGGTACTTTCTTCTTCCCGGAAGGTTTTGTCCGGATTTCTTAC
TATCTTCGGTACTGCTTTTGTTTTGAGAAGAATGAATCTCAAGTTTCATCCTCAGGTTCGGTAGG
GGGCGTAGGAACGGATAGCGCTCTTAGTTAGCTTAGGAGCGGAGGTACGAGACAAAAAGGGGAGT
TTCCCTCGACTAAGCAGTTTCCACTAGACCTTTGGCTAATAGTTTAGTTGTTCCCAGAGGAATTC
AATCTGGGCAGCTAGAAAAGGAGAGGGGCGGTGTGTACAAGGCCC
Found at i:34764 original size:30 final size:31
Alignment explanation
Indices: 34716--34773 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 31
34706 AGTGGTCAAC
*
34716 ACTCCTCTCCTTAACAGTCGAGTGGCTTGAA
1 ACTCCTCTCCTTAACAGTCAAGTGGCTTGAA
* *
34747 ACTCCTTTCCTT-GCAGTCAAGTGGCTT
1 ACTCCTCTCCTTAACAGTCAAGTGGCTT
34774 TCGCTCCTCT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
30 13 0.54
31 11 0.46
ACGTcount: A:0.19, C:0.29, G:0.19, T:0.33
Consensus pattern (31 bp):
ACTCCTCTCCTTAACAGTCAAGTGGCTTGAA
Left flanking sequence: Indices 34216 -- 34715
GTTTCATCCTCAGGTTCGGTAGGGGGCGTAGGAACGGATAGCGCTCTTAGTTAGCTTAGGAGCGG
AGGTACGAGACAAAAAGGGGAGTTTCCCTCGACTAAGCAGTTTCCACTAGACCTTTGGCTAATAG
TTTAGTTGTTCCCAGAGGAATTCAATCTGGGCAGCTAGAAAAGGAGAGGGGCGGTGTGTACAAGG
CCCTGGAAGGAATTCACCGCCCTATGGCTGACCGGCGATTACTAGCGATTCAGGCTTCATGCAGG
CGAGTTGCAGCCTGAAATCCGAACTGTGGACGGGTTTTTTGGAGTTAGCTCACCCTAGCAGCGGA
ATTGAATCAGAAAGCAAGACAGAATAGGCTCTTACTGCTCTAGAAAGAACTTCCCTTGAATCAAC
TGCTATTGATATTAGCTCAGGGACTTCGGTGCCTTAAGCGGAAGAGGGGATTTCTTTCTCTTTCT
GGCTTTCCGCGCCTCTCCTTCTTTACAGTAAAGCGAGTGGTCAAC
Right flanking sequence: Indices 34774 -- 35273
TCGCTCCTCTCTTTCCTTATAGTCAAGAGAGTTGCTTCGCTCCTTTCTTATTCTTTTTTTCTCTC
TCTGAAGTGAGTGAAGTCAAGCTAGCCTCAGCAAATCGGACATAAGCAATAGACCTAAATCCCCA
AAGAGGATAGCGATTCTCTTCCAGTGCTTTAATGTTGAGTTCAAAGAGTAACAACTAAGAAAAAA
TGGTAGGAATACCCGGAACCTAGCTCTATCGGAACTTACCTCAGCGACTTTCACTTCCTATCGGC
TTCGGACCGAAAGAGAGTGAGATGGAATCCAGAAGAGATCTAGCATTAGGCAATCTTTCGTTGAA
AGTCATTTCAGTCATCGATTGACGTCAGCAATTCGCGAGGGTCATTATAGCCATTGGTTGATCAA
ACAAAAGTGAATGACTCGTTCGTTAGGGACCTGGAGATTGACTGAGTTGGCCGGGTCTCGTAAGA
GCAGATTGATTAGGTCGGCTACTCTTCCCAGATCTCAGAGAATGA
Found at i:47913 original size:19 final size:19
Alignment explanation
Indices: 47889--47926 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
47879 GTAGAAAGAA
47889 AGGAGTGAAAGCCGCTTTC
1 AGGAGTGAAAGCCGCTTTC
* *
47908 AGGAGTGGAAGCCGTTTTC
1 AGGAGTGAAAGCCGCTTTC
47927 GCTCGTTTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.24, C:0.18, G:0.34, T:0.24
Consensus pattern (19 bp):
AGGAGTGAAAGCCGCTTTC
Left flanking sequence: Indices 47389 -- 47888
GTCTCTGGGCGGGGTTCTATATAGTTTCTAGTCGAGTTTCTAAAGCTGAAAAGCCGCTTTCCTTT
ATTATAAAGAAGGAGAGGAGTGAAAGCAACTTGACTTTATTCTGCGTCGGAAAGAAGCTGAAAGC
AACTCTTAAGACTATAAGGTTTGAGAGGCGTGGAAGCCGCTCTTAAAGGCGTTCCAGCCACTTGT
ACTCGACTTTACTATAAAAGGAGAGGAGCGGGAGGCAACTCTCTTGACCCGCTTACAAGAGAGGC
GTGAAAGCCATTTCCGCTCGTTTTTACTTACAGGAGAGGCGTGTTGACCACTCGCTTTAGAGGCG
TTCCAAGCCATTTGAACTCGCTTTACTGTAAAGAAGGAGAGGAACTTGAGTCAAAAGACTTACAG
GAGAGGCGCGAAGCTGCTTGAACTCGACTTGTTGGAAGGAGAGGAGTGGAATAAAGGAAAGACTT
CGTTTACTTCCAACTAATTGCTTATGTAAGAACTAGTAGAAAGAA
Right flanking sequence: Indices 47927 -- 48426
GCTCGTTTTTACTTACAGGAGAGGAGTGTTGACCGTTTGAACTCGACTTACAGGAGAGGCGCGGG
AGAAGAACAGAGAGGAAGAGGTGCGAAGCTGTTTGAACTCGATAGACCCGCTTACAAGAGAGGAG
CGAAGCCACTTTCTTGACTATAAGGAAAGAAAGGAGCGAAAGCTAAACCCTTTCTCCTATTCTAA
TAGAATAGTTCAATTAGTTGCTACGCAGTTCTCCTTAGAACAGCTACGCAACTTATAGTAAGAGT
TTTCTTAGAACAGCTACTATACTAATAGAATAGTTCCATTTGAATAATAGAATAGTTCAATTCGA
ATAATAGAATAGTTCAATTCGAATAGGCTTTCCACTCCTTTCCTTGCAGTCAAGCAGCTTCGCGC
CTTTCAAAGGCAGGTTCCACTCCGCTCCTGTAAGTAAAAACGAGTGGCTAAAACTCCTTTTTCGG
GGGGTCTTTCTTTTTGCTAAACGCACCTCTCCTCGTTCCGCCCTT
Found at i:48235 original size:22 final size:22
Alignment explanation
Indices: 48209--48276 Score: 118
Period size: 22 Copynumber: 3.1 Consensus size: 22
48199 GCTACTATAC
* *
48209 TAATAGAATAGTTCCATTTGAA
1 TAATAGAATAGTTCAATTCGAA
48231 TAATAGAATAGTTCAATTCGAA
1 TAATAGAATAGTTCAATTCGAA
48253 TAATAGAATAGTTCAATTCGAA
1 TAATAGAATAGTTCAATTCGAA
48275 TA
1 TA
48277 GGCTTTCCAC
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 44 1.00
ACGTcount: A:0.44, C:0.09, G:0.13, T:0.34
Consensus pattern (22 bp):
TAATAGAATAGTTCAATTCGAA
Left flanking sequence: Indices 47709 -- 48208
AGGCGTTCCAAGCCATTTGAACTCGCTTTACTGTAAAGAAGGAGAGGAACTTGAGTCAAAAGACT
TACAGGAGAGGCGCGAAGCTGCTTGAACTCGACTTGTTGGAAGGAGAGGAGTGGAATAAAGGAAA
GACTTCGTTTACTTCCAACTAATTGCTTATGTAAGAACTAGTAGAAAGAAAGGAGTGAAAGCCGC
TTTCAGGAGTGGAAGCCGTTTTCGCTCGTTTTTACTTACAGGAGAGGAGTGTTGACCGTTTGAAC
TCGACTTACAGGAGAGGCGCGGGAGAAGAACAGAGAGGAAGAGGTGCGAAGCTGTTTGAACTCGA
TAGACCCGCTTACAAGAGAGGAGCGAAGCCACTTTCTTGACTATAAGGAAAGAAAGGAGCGAAAG
CTAAACCCTTTCTCCTATTCTAATAGAATAGTTCAATTAGTTGCTACGCAGTTCTCCTTAGAACA
GCTACGCAACTTATAGTAAGAGTTTTCTTAGAACAGCTACTATAC
Right flanking sequence: Indices 48277 -- 48776
GGCTTTCCACTCCTTTCCTTGCAGTCAAGCAGCTTCGCGCCTTTCAAAGGCAGGTTCCACTCCGC
TCCTGTAAGTAAAAACGAGTGGCTAAAACTCCTTTTTCGGGGGGTCTTTCTTTTTGCTAAACGCA
CCTCTCCTCGTTCCGCCCTTCCTTCAAGTGGCTTTCGCTTCGATTCCGCTTAGAACTCCTGTCGG
GGAAAGCAAGTACAAGTGGCTTTCAGCGCCTTCCCTTAGCAGGTTATAGTCAAGTAGCTCCACTC
CTCTCGCATTCGCTCGAGCAGCTAAACGCGCCTCTAAAACGAGTTCAAATGGCTTTCCACTCCTC
TCAAACCTTATAGGAAAAAGAAGAGAGTGGCCGAAGCTCCTCTCCTTACAGTCGAGTGATTCAAA
TTCCTCTCACATTCGTTCGAGTGGCTTTTAGCTCCTTTCCAACTTCCACGCCTCTCCCTTTAAAC
GCTCCTTTCCTTAGCTTAGCAAGAAAGTTGTCAACACTCCTCTCC
Found at i:49015 original size:29 final size:29
Alignment explanation
Indices: 48969--49052 Score: 116
Period size: 29 Copynumber: 2.9 Consensus size: 29
48959 CCTCATTACA
48969 TCCACCCTCTCCCTTACGGTCGAGCTTTC
1 TCCACCCTCTCCCTTACGGTCGAGCTTTC
* *
48998 TCCTCCCTCTCCCTTACGGTCGAGCTCTC
1 TCCACCCTCTCCCTTACGGTCGAGCTTTC
* * *
49027 TTCACCCTCTCACTT-CGTTCGAGCTT
1 TCCACCCTCTCCCTTACGGTCGAGCTT
49053 CATTAATGAA
Statistics
Matches: 48, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
28 9 0.19
29 39 0.81
ACGTcount: A:0.10, C:0.44, G:0.13, T:0.33
Consensus pattern (29 bp):
TCCACCCTCTCCCTTACGGTCGAGCTTTC
Left flanking sequence: Indices 48469 -- 48968
CGGGGAAAGCAAGTACAAGTGGCTTTCAGCGCCTTCCCTTAGCAGGTTATAGTCAAGTAGCTCCA
CTCCTCTCGCATTCGCTCGAGCAGCTAAACGCGCCTCTAAAACGAGTTCAAATGGCTTTCCACTC
CTCTCAAACCTTATAGGAAAAAGAAGAGAGTGGCCGAAGCTCCTCTCCTTACAGTCGAGTGATTC
AAATTCCTCTCACATTCGTTCGAGTGGCTTTTAGCTCCTTTCCAACTTCCACGCCTCTCCCTTTA
AACGCTCCTTTCCTTAGCTTAGCAAGAAAGTTGTCAACACTCCTCTCCTTACAGTCTTTTGGCTC
AAACTCCTCTCTTTCAAGAGGATTCGCGGCATGTCAAGCCCCTCTTCTTACGGGAAGAGCTTCGT
TCGATAAGGTTTGAAACGTCGCATTTCCGCTTCCGGCTGGTGGTGAAGGAAAGGGGGAAGCGACT
CGTTCCTTCCTTTTAGGCGAGCTACTTCGTTCGAGCCTCATTACA
Right flanking sequence: Indices 49053 -- 49552
CATTAATGAAAAGAAAAGGGGGAAAGAAAGGGCGTTCCATGCCTTGAACTAATAGTCGAACTGCG
TAGCAACTATACTTAGAACAGCTACGCGCCTCTCCTTCTAGTCGAGTGGCTTTTCGCGCCTCTCC
TGATTCGAACTGCTTCGCTCCTCTCCTTAGAACAGCTACGCTACTAATAGTTCTTCTTTCCGCTC
CTCTCCTTATAATAAAAGCGAGTGGCTAAAGCGCCTTCCCAACGCAGTCAAGTGGAAAGCTCCTC
TCCTTCGCAGTCAAGTGGAAAGCTCCTCTCCTTTTTATGGCTTTTCGCCTCTCGCTCCTTTTATA
ATAAAGTCAAGTGCAAGTAGCTTTTCGCTCCTTTCCTTAACAGGAGAGTTCAAACGGCTTTCAGC
GCCTTCCCAACGCAGTCAAGTTCAAACGGCTCCGTTCCCCTCCTTTTTAGAATATAGTCGAGTTG
CTTGGAACGCCTTTCAAAGGCAGAATAAACCACATAAAGAGGTTT
Found at i:49307 original size:28 final size:28
Alignment explanation
Indices: 49275--49343 Score: 86
Period size: 28 Copynumber: 2.5 Consensus size: 28
49265 GCGAGTGGCT
49275 AAAGCGCCT-TCCCAACGCAGTCAAGTGG
1 AAAGCGCCTCT-CCAACGCAGTCAAGTGG
* **
49303 AAAGCTCCTCTCCTTCGCAGTCAAGTGG
1 AAAGCGCCTCTCCAACGCAGTCAAGTGG
*
49331 AAAGCTCCTCTCC
1 AAAGCGCCTCTCC
49344 TTTTTATGGC
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
28 36 0.97
29 1 0.03
ACGTcount: A:0.25, C:0.35, G:0.20, T:0.20
Consensus pattern (28 bp):
AAAGCGCCTCTCCAACGCAGTCAAGTGG
Left flanking sequence: Indices 48775 -- 49274
CCTTACAGTCTTTTGGCTCAAACTCCTCTCTTTCAAGAGGATTCGCGGCATGTCAAGCCCCTCTT
CTTACGGGAAGAGCTTCGTTCGATAAGGTTTGAAACGTCGCATTTCCGCTTCCGGCTGGTGGTGA
AGGAAAGGGGGAAGCGACTCGTTCCTTCCTTTTAGGCGAGCTACTTCGTTCGAGCCTCATTACAT
CCACCCTCTCCCTTACGGTCGAGCTTTCTCCTCCCTCTCCCTTACGGTCGAGCTCTCTTCACCCT
CTCACTTCGTTCGAGCTTCATTAATGAAAAGAAAAGGGGGAAAGAAAGGGCGTTCCATGCCTTGA
ACTAATAGTCGAACTGCGTAGCAACTATACTTAGAACAGCTACGCGCCTCTCCTTCTAGTCGAGT
GGCTTTTCGCGCCTCTCCTGATTCGAACTGCTTCGCTCCTCTCCTTAGAACAGCTACGCTACTAA
TAGTTCTTCTTTCCGCTCCTCTCCTTATAATAAAAGCGAGTGGCT
Right flanking sequence: Indices 49344 -- 49843
TTTTTATGGCTTTTCGCCTCTCGCTCCTTTTATAATAAAGTCAAGTGCAAGTAGCTTTTCGCTCC
TTTCCTTAACAGGAGAGTTCAAACGGCTTTCAGCGCCTTCCCAACGCAGTCAAGTTCAAACGGCT
CCGTTCCCCTCCTTTTTAGAATATAGTCGAGTTGCTTGGAACGCCTTTCAAAGGCAGAATAAACC
ACATAAAGAGGTTTTGGGTCTTCATGAGTAGTTCTTGTCGACGGAAGTGAGTATTCCTAAGGCTA
AGGCGGGGGCGAAACAGGGCAGCCCGCCCAGAGACTTATAGGAAAGAAGAACAGCTACGCAACTA
ATTGAACTATTCTATTCGAACAAGGCTTTCCACGCCTCTCCTGTAAGTCGAGTTGCTCCGCGCCT
TTCCAACGCAGGAAAGTTCAAACGGCTCCTCTCCTCTCCTTGCAGGAAAGTAGCTTTCCACTCCT
CTCCTTCCGCTCCTTTCCTTAGCAGAATAAAGTCAAGTTCAAACT
Found at i:49344 original size:28 final size:28
Alignment explanation
Indices: 49290--49345 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
49280 GCCTTCCCAA
49290 CGCAGTCAAGTGGAAAGCTCCTCTCCTT
1 CGCAGTCAAGTGGAAAGCTCCTCTCCTT
49318 CGCAGTCAAGTGGAAAGCTCCTCTCCTT
1 CGCAGTCAAGTGGAAAGCTCCTCTCCTT
49346 TTTATGGCTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.21, C:0.32, G:0.21, T:0.25
Consensus pattern (28 bp):
CGCAGTCAAGTGGAAAGCTCCTCTCCTT
Left flanking sequence: Indices 48790 -- 49289
GCTCAAACTCCTCTCTTTCAAGAGGATTCGCGGCATGTCAAGCCCCTCTTCTTACGGGAAGAGCT
TCGTTCGATAAGGTTTGAAACGTCGCATTTCCGCTTCCGGCTGGTGGTGAAGGAAAGGGGGAAGC
GACTCGTTCCTTCCTTTTAGGCGAGCTACTTCGTTCGAGCCTCATTACATCCACCCTCTCCCTTA
CGGTCGAGCTTTCTCCTCCCTCTCCCTTACGGTCGAGCTCTCTTCACCCTCTCACTTCGTTCGAG
CTTCATTAATGAAAAGAAAAGGGGGAAAGAAAGGGCGTTCCATGCCTTGAACTAATAGTCGAACT
GCGTAGCAACTATACTTAGAACAGCTACGCGCCTCTCCTTCTAGTCGAGTGGCTTTTCGCGCCTC
TCCTGATTCGAACTGCTTCGCTCCTCTCCTTAGAACAGCTACGCTACTAATAGTTCTTCTTTCCG
CTCCTCTCCTTATAATAAAAGCGAGTGGCTAAAGCGCCTTCCCAA
Right flanking sequence: Indices 49346 -- 49845
TTTATGGCTTTTCGCCTCTCGCTCCTTTTATAATAAAGTCAAGTGCAAGTAGCTTTTCGCTCCTT
TCCTTAACAGGAGAGTTCAAACGGCTTTCAGCGCCTTCCCAACGCAGTCAAGTTCAAACGGCTCC
GTTCCCCTCCTTTTTAGAATATAGTCGAGTTGCTTGGAACGCCTTTCAAAGGCAGAATAAACCAC
ATAAAGAGGTTTTGGGTCTTCATGAGTAGTTCTTGTCGACGGAAGTGAGTATTCCTAAGGCTAAG
GCGGGGGCGAAACAGGGCAGCCCGCCCAGAGACTTATAGGAAAGAAGAACAGCTACGCAACTAAT
TGAACTATTCTATTCGAACAAGGCTTTCCACGCCTCTCCTGTAAGTCGAGTTGCTCCGCGCCTTT
CCAACGCAGGAAAGTTCAAACGGCTCCTCTCCTCTCCTTGCAGGAAAGTAGCTTTCCACTCCTCT
CCTTCCGCTCCTTTCCTTAGCAGAATAAAGTCAAGTTCAAACTCA
Found at i:62715 original size:19 final size:19
Alignment explanation
Indices: 62691--62728 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
62681 TCGGTGCGAC
*
62691 CACTAAAGAATTGCTTATA
1 CACTAAAGAACTGCTTATA
*
62710 CACTAAAGAGCTGCTTATA
1 CACTAAAGAACTGCTTATA
62729 TACGTTTACT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.39, C:0.18, G:0.13, T:0.29
Consensus pattern (19 bp):
CACTAAAGAACTGCTTATA
Left flanking sequence: Indices 62191 -- 62690
AAGAGTCAAGACCAGGCTACCTAATGGAATGTTTAACCGATCCATTCCGGATCGACCGAATTGGT
ACGGAAGTTGTAACATGGGAAAACCACGGAAAACACGACTTATTTGAATAACCCGGTGACCTACC
AATTGTAGAAGTAGGATTTTTGGCAAGCAATAAGCACTTAAATAATACAATTCAAGTGTACCATC
TTCTTTCTCATTTCGAGGAAAAGGTGCGGAAGGAAAAGGAAACAACGGAGGGATCCGAATCGGAC
CTAAATGGGAATGACATGAAAAGTCTTTTTCAAAACCTAGCATTAAGGGCGTTACGACGATATAC
GAGAGGAATAGAGAAAAACTCGTGATTGGTGTGGAGGGGAAGATCTGTTTATGATATAGTTCAAG
AAAGAGTCGTCTCATTTCCTTACTTCTTTCTAATTCATTCACTTCAAGACTGGTTCTGAACGCCG
CGTAACATCATCTTCAACCAACCTCCACCGTACTTTCGGTGCGAC
Right flanking sequence: Indices 62729 -- 63228
TACGTTTACTAAAAGACTGACTTTCATTCATTATCATTAGTCCAGCGTGAAACTAAGAAAGAGAG
ATGTGCCTAAGGCGGCATGTAAGCAAACTGTGCACGCTAAGAGAAGAGGAGAGATGTTCGCAATT
ACTACCACAAGAAAGCCGCCCCCTATCTTCTAAAGGGGCCCGTCACTTCGTTCGTACCTTCTTGG
CTTAGGCTTCCAACTGAACAACATGGCCTTGCCGCCCCGCCACTAGCAGAAGCTAAGCGCTTGAA
AAGCGCGCTAAGAAAGGTTGCTTCTGTCGCCCTTTCTGTGCAACAGTCCACCAGTAGCGGAAGAG
AGGGTTACCGTACATACAAGAGTCTTCCAGTTCTTACGGAAGCTCTTTCTTACCAGTCAATCAAG
TAGTACAAGAACTGTATCTTATTTTATAGCCCGGCGCGGCGGGTCGCCTTTTAAATTAAGTAGAT
AGAAGAAAGTATTAAATAGATAAGGAGTAGGTGAGTGAGTGAGTC
Found at i:65002 original size:42 final size:42
Alignment explanation
Indices: 64955--65089 Score: 208
Period size: 42 Copynumber: 3.3 Consensus size: 42
64945 GCAGCTGCGC
64955 GAAAGCCGTTGCGCAACAAGCAGCGGATGAGCGCACTAGCGT
1 GAAAGCCGTTGCGCAACAAGCAGCGGATGAGCGCACTAGCGT
* * *
64997 GAAAGCCGTTGCGCAACAAGCA----ACG-GCTCACTAGCGC
1 GAAAGCCGTTGCGCAACAAGCAGCGGATGAGCGCACTAGCGT
65034 GAAAGCCGTTGCGCAACAAGCAGCGGATGAGCGCACTAGCGT
1 GAAAGCCGTTGCGCAACAAGCAGCGGATGAGCGCACTAGCGT
65076 GAAAGCCGTTGCGC
1 GAAAGCCGTTGCGC
65090 GTTAGTCACG
Statistics
Matches: 82, Mismatches: 6, Indels: 10
0.84 0.06 0.10
Matches are distributed among these distances:
37 32 0.39
38 2 0.02
41 2 0.02
42 46 0.56
ACGTcount: A:0.28, C:0.28, G:0.32, T:0.12
Consensus pattern (42 bp):
GAAAGCCGTTGCGCAACAAGCAGCGGATGAGCGCACTAGCGT
Left flanking sequence: Indices 64455 -- 64954
TCGAACAGTTGAGCGGCCGCCGGCCAGCAACTTCCGTGCACAGATATAGATTCATTCTTCGTACC
TGGTCCAGCCTCAAAACCCTTCGCGGGTTGGTAAGAAGTCAGTCTTGTTTGGTAAGACGGAATTG
GACAAAGAAAAGAGAGTGCTCGACCGGAACAACGGCCAACAAAGACCGTAATTACATAGATAACT
GCTCCTCCCCCTCTCCTTAAGGCTTTAAGGCGAACCGTATGGCGGCTGGAAAGAAAGACGACCTC
ACCTTCTCTGGTGTCAGTGAGAGCAATTTGAGTATCCCCCGTTGACCTTCTTTTGTAGATAGAAT
CTTCAATGAGTGGAAACAAGCAACCTTACTAAGAAAGGTGCTTGTTGAGTAAGGCCGGCTTTCGA
GCCCAAGCCCCTTGTATAGGTTGGGCGCTTGAGCGCATCTTTCTCATATCGATCAAGGCTTTCCT
TGAGTTTGAAATAAGGGGCAAGAAGCAAGGGCGTAGCAGCTGCGC
Right flanking sequence: Indices 65090 -- 65589
GTTAGTCACGCGCATCCGTTTTCTTGCTGCATCCCTTTTCTTGCAGGAGTGCTAACGCGCGACCT
TACGTTTTCTTCCGCTTGCTCTGCAGTACGAGCCTCATACAGAGCCGCGCTCCTTTAATATGATG
AGAAGAAGGGGGGCCGGCCTCTTTTCCGTACCAATCCTTATTTACTACTACATCTTTTTGGGGGT
GTATAGCTCAGTTGGTAGAGCATTGGGCTTTTAACCTAATGGTCGCAGGTTCAAGTCCTGCTATA
CCCAAACCTACCTTACACTCTACTATGAATAAGGATGCATAGTAGCCTTCAAAGATGACTCTTTG
GCCTTTAGACTCGCTTCGGCGACTTCGCCCTTGTTGTGACAAGGGGATGAGACGCCCGCGCAAGG
ACCTAAGTTAAGGTGGGTGAAAACCCCCCAGATGTACTCAAAAGAGGAACTGGGTCACCAAAAGT
CACGATCAGAATCAAATTTGGGAGTTCGCCGCGGGGGCAGCATAG
Found at i:65121 original size:17 final size:17
Alignment explanation
Indices: 65101--65133 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
65091 TTAGTCACGC
*
65101 GCATCCGTTTTCTTGCT
1 GCATCCCTTTTCTTGCT
65118 GCATCCCTTTTCTTGC
1 GCATCCCTTTTCTTGC
65134 AGGAGTGCTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.06, C:0.33, G:0.15, T:0.45
Consensus pattern (17 bp):
GCATCCCTTTTCTTGCT
Left flanking sequence: Indices 64601 -- 65100
TGCTCGACCGGAACAACGGCCAACAAAGACCGTAATTACATAGATAACTGCTCCTCCCCCTCTCC
TTAAGGCTTTAAGGCGAACCGTATGGCGGCTGGAAAGAAAGACGACCTCACCTTCTCTGGTGTCA
GTGAGAGCAATTTGAGTATCCCCCGTTGACCTTCTTTTGTAGATAGAATCTTCAATGAGTGGAAA
CAAGCAACCTTACTAAGAAAGGTGCTTGTTGAGTAAGGCCGGCTTTCGAGCCCAAGCCCCTTGTA
TAGGTTGGGCGCTTGAGCGCATCTTTCTCATATCGATCAAGGCTTTCCTTGAGTTTGAAATAAGG
GGCAAGAAGCAAGGGCGTAGCAGCTGCGCGAAAGCCGTTGCGCAACAAGCAGCGGATGAGCGCAC
TAGCGTGAAAGCCGTTGCGCAACAAGCAACGGCTCACTAGCGCGAAAGCCGTTGCGCAACAAGCA
GCGGATGAGCGCACTAGCGTGAAAGCCGTTGCGCGTTAGTCACGC
Right flanking sequence: Indices 65134 -- 65633
AGGAGTGCTAACGCGCGACCTTACGTTTTCTTCCGCTTGCTCTGCAGTACGAGCCTCATACAGAG
CCGCGCTCCTTTAATATGATGAGAAGAAGGGGGGCCGGCCTCTTTTCCGTACCAATCCTTATTTA
CTACTACATCTTTTTGGGGGTGTATAGCTCAGTTGGTAGAGCATTGGGCTTTTAACCTAATGGTC
GCAGGTTCAAGTCCTGCTATACCCAAACCTACCTTACACTCTACTATGAATAAGGATGCATAGTA
GCCTTCAAAGATGACTCTTTGGCCTTTAGACTCGCTTCGGCGACTTCGCCCTTGTTGTGACAAGG
GGATGAGACGCCCGCGCAAGGACCTAAGTTAAGGTGGGTGAAAACCCCCCAGATGTACTCAAAAG
AGGAACTGGGTCACCAAAAGTCACGATCAGAATCAAATTTGGGAGTTCGCCGCGGGGGCAGCATA
GACCCAACGGAGGTGCCGGTTCAAGTCCGGCTCGTGACTAAGTCT
Found at i:68605 original size:30 final size:31
Alignment explanation
Indices: 68569--68626 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 31
68559 AGAGGAGCGA
*
68569 AAGCCACTTGACTG-CAAGGAAAGGAGTTTC
1 AAGCCACTCGACTGTCAAGGAAAGGAGTTTC
* *
68599 AAGCCACTCGACTGTTAAGGAGAGGAGT
1 AAGCCACTCGACTGTCAAGGAAAGGAGT
68627 GTTGACCACT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
30 13 0.54
31 11 0.46
ACGTcount: A:0.33, C:0.19, G:0.29, T:0.19
Consensus pattern (31 bp):
AAGCCACTCGACTGTCAAGGAAAGGAGTTTC
Left flanking sequence: Indices 68069 -- 68568
AAGGGATTCGTGCTTGAATGTCGAGATCAGGGGACTCTATCCAATCCATGCGGCAAATCTGTTTG
TGGTGGAAAAAAGTCAACAATAAAGAAAAAAGAAATAAATAGAATATAGAAAATCATTGAATTTG
TTTGCTCCGATACAAGAGATCGGCCCCGAAGCAAGATATGGTGGGTGCCAGCAACTTTCACTTGT
TAGGAGTAGGGGCTGAAAAGAGCTCTTTGTATAGGTTGGGTTTTCTGGGCTTTGATGCTTACCTT
CTTATTATATTATTAAAAGGGGAAGGTTTAATAAAGGAGCTGAAAGCCACTTGCTTGACTATAAA
GTTGGAGAGGAGCGAAAGCCACTTGACTGCAAGGAAAGGAGTTTTTAGCAACTCTCTTGACTATA
AGGTTTGAGAGGAGTTGAAAGCCGCTTTCAGGCGTGAAAGCCACTTGCTTGACTATAAGCAAGGA
AAGGAGCGAAGCAACTCTCTTGACTATAAGGAAAGAGAGGAGCGA
Right flanking sequence: Indices 68627 -- 69126
GTTGACCACTCGACTTTATTGTAAGGAGAGGCGTGAAAAGCCATTTTCACTCGCTTGACTATAAG
GTTTGAGAGGCGCGGGGAGCCACTTGCTTGACTATAAGGAAGGAGAGGAGCTTGAAAGCCCTTTT
GCTGGATTGTTGGTCCGCAGCCCCGCCCTATAGAATGAATAAGGAGAGGCTTATCGATGACCGAA
CCACTCTTATACTACTCCTTACCTCACCCCCCTTGTCACAACAAGGGAAAGCCAGAGAAGGGGGC
CTGCTGGAAACCCTCGCCTTCGGCTCCATACTGAAAACGCCGGCCATGAAGGGACATCACGACTA
TCCTTTCTGGTAATACCGGGCTTTATATGATCCTGATCAGTGATCAGTATATTTGAATATTCTGG
ATCCTTATGTGTGTGCTTTTTTTTGTTATACTAGCGGCGGCAGATCTATTAGTAAACAGGAGCCG
CTATCGCTCACCCGGCTGGATGTCAATCTGACGGATGGATAGGCG
Found at i:93243 original size:42 final size:42
Alignment explanation
Indices: 93184--93267 Score: 159
Period size: 42 Copynumber: 2.0 Consensus size: 42
93174 GCTTTTATTA
93184 AACAAGCAGCGGATGAGCGCACTAGCGCGAAAGCCGTTGCGC
1 AACAAGCAGCGGATGAGCGCACTAGCGCGAAAGCCGTTGCGC
*
93226 AACAAGCAGCGGATGAGCGCACTAGCGTGAAAGCCGTTGCGC
1 AACAAGCAGCGGATGAGCGCACTAGCGCGAAAGCCGTTGCGC
93268 GTTAGTCACG
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.29, C:0.27, G:0.33, T:0.11
Consensus pattern (42 bp):
AACAAGCAGCGGATGAGCGCACTAGCGCGAAAGCCGTTGCGC
Left flanking sequence: Indices 92684 -- 93183
TCTGAGGTCCCACGAAGGTTCGACTAGTAGCACTCTGTCGGACGCCAATTCGGGTGATATTACTA
GCACTCAAGTTTTGAGTGATATCACCGCTCTTTTTGAGCAACGAATGGAAGTGGGAAAGAATTAA
CTCCAGAATGGAGTCCAATAGAGTTCTGCCAAGCGTTGGGGAAGAAGCGGTGAATGACCTATCTT
TATTGAAAGACATCTATTGTGATCTAGCGGACCATGGAATGCTAAGTTGGTATTGGGAACCAGCT
TGGGACTTTCTAAATCTCATTAGCAATAGTCCAGGAATGACATAGCCTTCCTGTGCAATGGGTGT
CTTAACGTACTAAGTAAGGTGGTTTTTTCTAAAGCGGCATTCTCCCTTCTATCTATCAACAATGG
AATTATGGAACTTTCTCCCCGAGCTGCGGAACTAACGAGTCTGATCAATAGAGTCCGTCATTTTT
GCTATTCCTTCCTACTTCTTCTTCCTCTATTATGTGCTTTTATTA
Right flanking sequence: Indices 93268 -- 93767
GTTAGTCACGCGCATCCGTTTTCTTGCTGCAGCCGTTTTCTTGCTGCCTGAAACTCGAGAAAATA
GAGTTGTTTGAGACCAAATGTTATAGAGTTGGGGGCTCTCTGGGGAGGCACACCTTCACTTCCTT
CTTAATGAAGGGGTTCCCCGGGAGTCTGACCTTGTCCTTTCTTTTAATTGTCGGGGCCGTCATGA
GTGCCGAAACCTATTTCGGTAAGATGATGATGGCTCCTTCGGGCGCATCAAGCTCTGAAGATCCA
AACTGGACGGAAGCCCTGAGATCTTCTAAAGGGCAGGGAGAGACTTCAGAAAGGGAAAGCACAGG
CACATCGTCGTCCATCAACCTACAAAAAGAAAGAGCACGTCCGGCGCCTGCCCCAAATGAAGTAG
CTTCCCCTGCCCCTGTCGTCCCCTTTCCATATCAAGAAGATGAGATCATAGGGGGCGACAGTGTA
GAAAGCATCCAAAGAGCGGCCTTTGAGTTTGAGGAGAAAAACCCC
Found at i:104252 original size:17 final size:17
Alignment explanation
Indices: 104230--104264 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
104220 ATGCGCGTGA
*
104230 CAGCAAGAAAATGGATG
1 CAGCAAGAAAACGGATG
104247 CAGCAAGAAAACGGATG
1 CAGCAAGAAAACGGATG
104264 C
1 C
104265 GCGTGACTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.46, C:0.17, G:0.29, T:0.09
Consensus pattern (17 bp):
CAGCAAGAAAACGGATG
Left flanking sequence: Indices 103730 -- 104229
GGGTCGTCTTTCTTCCGATATGGAAGAGGTATCAACACTCCTCTTTAATATGGGAGCGTAGACAT
TCCGGTGTAATTTGATCATCCGGTAGATCTAGGGCGATTTGCCATTCATCAGGCTTGGGAGAGGA
GGTAGACGCTCCCCCACCCGAATCCTTTCCTGCGCAGTAGACCGTTTCTAACAAGAAGTCAAAAA
CGAAAAAAGCGAAGGAAAGAAAAAGAGCTAGGAAATATGGTCCAAAGAATCTCGATAGTAGTTCC
ATGAACAATCCTTTGCGGGATTGGATTTTTTTGATAGTGGAAATGCCATAAAGCGCGACCCAAGA
TCCATGATACGAAAACCAAAATCAGAATAACGAAGAAAAAGACATCCGGATGTATTTCGAACTCC
AACTTGAAGACTAAACAATTATACAATAGAAAAGACCATCTAAAGAGCCTTATCTCTATCATTAT
AGCAAAAATAGTGGAAAAAAGGAGCAAGAAAACGTATGCGCGTGA
Right flanking sequence: Indices 104265 -- 104764
GCGTGACTAACGCGCAACGGCTTTCACGCTAGTGCGCTCATCCGCTGCTTGTTGCGCAACGGCTT
TCGCGCTAGTGAGCCGTTGCTTGTTGCGCAACGGCTTTCGCGCTAGTGCGCTCATCCGCTGCTTG
TTGGAAAATGAAAGGAAAAAAGGAACGGTTTTTGAGAACATAGCAGAGGAATTCAAATTAGGACA
AATCTTTCTCTTTCTCCGCATAAGTCTCGTTGAATCAGTCTTTTTCGCCACATAGGAGCTTTGGG
AATTGAACCCAAGACAGACCCTTGCCCCTTTCTTCTTTTTCTCTTACTATTTTGATAGAGGAGAC
TGCCCACACTGAACACCAACCCAATCTCGATAAGAATCAGTACGCTACACTCGATCAATCCACGA
AGGTGTGGCACTTCTCCACCCTCTGCTAGCAGCTTTCTTCTCTTATTCTTTTTTCTTAAGTAGAG
GTTCTTTACCGGTGACCCAGTTGATTCGGCCCCCACTATCCTTCA
Found at i:104337 original size:42 final size:42
Alignment explanation
Indices: 104276--104397 Score: 182
Period size: 37 Copynumber: 3.0 Consensus size: 42
104266 CGTGACTAAC
*
104276 GCGCAACGGCTTTCACGCTAGTGCGCTCATCCGCTGCTTGTT
1 GCGCAACGGCTTTCGCGCTAGTGCGCTCATCCGCTGCTTGTT
* *
104318 GCGCAACGGCTTTCGCGCTAGT--G---AGCCGTTGCTTGTT
1 GCGCAACGGCTTTCGCGCTAGTGCGCTCATCCGCTGCTTGTT
104355 GCGCAACGGCTTTCGCGCTAGTGCGCTCATCCGCTGCTTGTT
1 GCGCAACGGCTTTCGCGCTAGTGCGCTCATCCGCTGCTTGTT
104397 G
1 G
104398 GAAAATGAAA
Statistics
Matches: 70, Mismatches: 5, Indels: 10
0.82 0.06 0.12
Matches are distributed among these distances:
37 34 0.49
39 1 0.01
40 1 0.01
42 34 0.49
ACGTcount: A:0.11, C:0.31, G:0.30, T:0.29
Consensus pattern (42 bp):
GCGCAACGGCTTTCGCGCTAGTGCGCTCATCCGCTGCTTGTT
Left flanking sequence: Indices 103776 -- 104275
AATATGGGAGCGTAGACATTCCGGTGTAATTTGATCATCCGGTAGATCTAGGGCGATTTGCCATT
CATCAGGCTTGGGAGAGGAGGTAGACGCTCCCCCACCCGAATCCTTTCCTGCGCAGTAGACCGTT
TCTAACAAGAAGTCAAAAACGAAAAAAGCGAAGGAAAGAAAAAGAGCTAGGAAATATGGTCCAAA
GAATCTCGATAGTAGTTCCATGAACAATCCTTTGCGGGATTGGATTTTTTTGATAGTGGAAATGC
CATAAAGCGCGACCCAAGATCCATGATACGAAAACCAAAATCAGAATAACGAAGAAAAAGACATC
CGGATGTATTTCGAACTCCAACTTGAAGACTAAACAATTATACAATAGAAAAGACCATCTAAAGA
GCCTTATCTCTATCATTATAGCAAAAATAGTGGAAAAAAGGAGCAAGAAAACGTATGCGCGTGAC
AGCAAGAAAATGGATGCAGCAAGAAAACGGATGCGCGTGACTAAC
Right flanking sequence: Indices 104398 -- 104897
GAAAATGAAAGGAAAAAAGGAACGGTTTTTGAGAACATAGCAGAGGAATTCAAATTAGGACAAAT
CTTTCTCTTTCTCCGCATAAGTCTCGTTGAATCAGTCTTTTTCGCCACATAGGAGCTTTGGGAAT
TGAACCCAAGACAGACCCTTGCCCCTTTCTTCTTTTTCTCTTACTATTTTGATAGAGGAGACTGC
CCACACTGAACACCAACCCAATCTCGATAAGAATCAGTACGCTACACTCGATCAATCCACGAAGG
TGTGGCACTTCTCCACCCTCTGCTAGCAGCTTTCTTCTCTTATTCTTTTTTCTTAAGTAGAGGTT
CTTTACCGGTGACCCAGTTGATTCGGCCCCCACTATCCTTCACTATCCTTAAGGAACTAACCCAG
GCAACAACACTCATTTAGGTTAGAGGCTGCTTTGCTTAGTAAGAGCTAAGTACAGATCTGCTACC
AGCTCCCTGGGTAGCCATCCGTCTAATGAGCTAACTTCTTGACCT
Found at i:123908 original size:38 final size:36
Alignment explanation
Indices: 123848--123933 Score: 100
Period size: 38 Copynumber: 2.3 Consensus size: 36
123838 TGCAACTCTG
* *
123848 TCCTCTCCTTCCTTATAGTAAAGGCGAGTGGCTTTTCAGC
1 TCCTCTCCTT--TTATAATAAAGGCAAGTGGC-TTTC-GC
* *
123888 TCCTTTCCTTTTATAATAAAGTCAAGTGGCTTTCGC
1 TCCTCTCCTTTTATAATAAAGGCAAGTGGCTTTCGC
123924 TCCTCTCCTT
1 TCCTCTCCTT
123934 CCTCCCGGGT
Statistics
Matches: 41, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
36 11 0.27
37 4 0.10
38 17 0.41
40 9 0.22
ACGTcount: A:0.17, C:0.28, G:0.15, T:0.40
Consensus pattern (36 bp):
TCCTCTCCTTTTATAATAAAGGCAAGTGGCTTTCGC
Left flanking sequence: Indices 123348 -- 123847
AGTCAGATTCTTTCTCTTTAAAGTTACGATTGTTCGAAGTTCAATTTGATCCGGGTAAGAAGACC
TAAAGGCGGCCAAAAGGTTCTTGGGTTTCTTACGCTTTTATCTCTGTCTCTGCTGTAACTGCTAA
CAACAATAGCAATCTCTCTTCCTTTCTGGCTTAGCCTGTTGCGTAACCGATTTCGAGCTTTCAAT
CTTTTCATCTCTATAGACGTCATTTCAACAGTGAAGAAATCCTCTAACTTGAACAAGACTAAGGG
CAACCAACTCAGTAACTTCCTAGGGTTCATAGAGGCGCCCAGTATTGAAGTTCGAATCAATGCCT
AATTTACCCTCCTTCAGCTAGGCCAGGAACGAAAAATGAGATGTTGCTTAAAACTTCCTAGCAGT
GAAATCTCAGGATGCTTGCAGCTCAACTATATTAATCTCCTCAAGCCATAAGGCGTAGGGCCTTG
TATTCGAATAGAAACATCAATCTTTCATCTAAAGCTGCAACTCTG
Right flanking sequence: Indices 123934 -- 124433
CCTCCCGGGTAAGATGAAGAACAGCCAGATACTGGAATTGGAGTAGAATCAATGGGGACTCGGAG
GTCCTCCGCAGGACCTAGGAATAGAATAGGCGGGATGAGCTCAACAATAGCTAGATTGAGTTCTC
TGGGGCTGTCCTCTATAGTCGTTCCCACGGGAAGGATGTGAATAGGAGCTGAGTTCAAGAGATAG
ATGTAGTGATCTCGGTCTTTCTAAGGAATTTCTTGTATCAATAGATTCTGCTCTGTATCCCGGAA
GGGAATGCAACAATAGAGAAAGATTCTAACTTCACTTGCTGCCTTTATGCTCTAGGAGTTAAGTG
ACCCATAGGCATGGGTCACAAACGAGAAAGGTAGGTTCCTTTCCTTACTAGATCCTCTGTCACTT
AGACTTCCTTAGAAGACTATCAATTCTCAGTCAGTTACCAGAGAAAAAATCTGAGAAGATTTAAA
GGCATTTATTCTAGCCGATAAGGATCTGAATCAATGGGTGTTGGA
Found at i:129391 original size:24 final size:24
Alignment explanation
Indices: 129359--129405 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
129349 AAGCAGCGCG
* *
129359 TCGTGCTATAATCGGACACTTCCA
1 TCGTGCTATAAGCGGACAATTCCA
*
129383 TCGTGCTATGAGCGGACAATTCC
1 TCGTGCTATAAGCGGACAATTCC
129406 GAAGAAATGG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.23, C:0.28, G:0.21, T:0.28
Consensus pattern (24 bp):
TCGTGCTATAAGCGGACAATTCCA
Left flanking sequence: Indices 128859 -- 129358
ACATTGAATCGGTCAAGATCAAATCTGTTTATCAAAGTGCTTCTCCGATTGCTCAAGACATCTCT
TTTCAACCGAGGAACAAAACAAGATCATTTCGTTCCATTTTTAGTAAAATAGTGAAGGATATTCC
ATTAGTAATGAAAAAAGGGGTGGAGGGGATCCGTATATGTTGTTCAGGTCGATTAGAAGGTGCAG
AAATAGCTAGAACTGAATGCGGAAAGTATGGAAAAACATCTCGTAATGTATTTAACCAGAAAATA
GATTATGCTCCTGCGGAAGTATCTACTCGTTACGGAATCTCAGGTGTCAAAGTGTGGATTTCATA
TAGTAAAAAAAAAAAGGGACGTGCTATATCCGAAACGTACGAAATATAGTAAATATCGTAAAGGC
AGATGTAGTAGGGGTTGCAAACCGGACGGTACACAACTTGGTTTTGGAAGATATGGCACTAAAAG
TTGTAGAGCTGGTCGTCTTTCATATCGAGCCATTGAAGCAGCGCG
Right flanking sequence: Indices 129406 -- 129905
GAAGAAATGGTAAGATATGGGTAAGAGTTCTCGCAGATATCCCTATTACCGGGAAACCTACAGAA
GTAAGAATGGGAAGAGGAAAAGGAAATCCTACGGGTTGGATTGCTCGTGTGTCCAGGGGACAAAT
CCTATTTGAAATGGATGGTGTGAGTTTGTCAAATGCTCGACAAGCCGCTACATTAGCGGCGCATA
AACTATGTTCGTCAACCAAGTTTGTTCAGTGGTCGTAAGCTTATTAATCTGACCCAAATTCTCCA
TTTTGGTACACGCCAAAGCCTTCCATTTCGCCGGATTGAAAGAGCCATCAATCACTATGATCTCT
TTCTTAGAAAAGAAATTGCGTAAATTCTGCCTTTTTTTCTCCCAGCAAGAAAACGGATGTGCTAA
CGCGCAACGGCTTTCGCGCTAGTGCGCTCATCCGCTGCTTGTTGGTCAACAACCAACTAAAGTGC
TCTATACTTCTTCACTACTCGTACAGGGAAGGTGGAAGAAATTCA
Found at i:145138 original size:19 final size:19
Alignment explanation
Indices: 145102--145140 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
145092 ACATTGAGAT
145102 CAAAAGAAGAAAGAGAGTC
1 CAAAAGAAGAAAGAGAGTC
*
145121 CAAAA-AAGAAGAGTGAGTC
1 CAAAAGAAGAA-AGAGAGTC
145140 C
1 C
145141 GACGTAGGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 5 0.28
19 13 0.72
ACGTcount: A:0.54, C:0.13, G:0.26, T:0.08
Consensus pattern (19 bp):
CAAAAGAAGAAAGAGAGTC
Left flanking sequence: Indices 144602 -- 145101
CCCCTCTACCAGAGAATCCATGAATTCCGGGCACCTGCAGTAGCCGCAGGGATGGGAAAGACAAA
TAACCAGCCAACTATATATGCCTAAAAGCCTGCCTTCCTTATAGAATGGGCTCCTCCTTAGAATT
AACGAGATCTAGAGTCTTGGATGAATCCTCTTGAAACGGGTCGCCCTAGAAGACTCGATGGCTTA
ACAGCCCAGTGAATAACCTGATTCAGAGAGATAACCCGGTCTTTAGACACTCGCCCTACTTCTTT
CAGAAGCAACTACTTTCTTTTCTCCTTCTTCCCGTGCCTCTTTGCTGCCAATTCGACTGATCAGT
AGCTAGCTCTACCATTGTAGTTGTGGAGGGGACTTTCTCTATTCAAAGTGGATCCCAGGATCTTT
CCCTTCCTCATTTCTAATAAGGGGCTCTAGAGCAGGTCTGCTAACTCCTGCTTTTCTTTATTTAT
TTCCATCTCATTCACCCGCCTGTTCGGCTGTCGACACATTGAGAT
Right flanking sequence: Indices 145141 -- 145640
GACGTAGGAAGAGCCGCTTCCTTTTCAAACAGCCCGAAAAGTCCTTTATTCTCTTACAAGATTTC
GAGGAGCCGCAGCTCGGGGGCTTGATACAAGTGTCTCCACCTATGTTAGTAAAGATGCCCCCTAA
ATGGGGAAAATTCATCATTATTTTGCCAGTTTCTTGTTGAAGGCCTAATCACACATGAGAGGATG
TCGTTGGAAATAGCTTAGAAGAGAGTCTTATATATTCAATTACGCAGTGTAAGACCTAAGCATTG
TGTCTGAGTGGGCGAATGGCTTCTTTTTTCACCAAATCCAGAAGGGAAGGGCAAGAGTAAAAAGA
GAGTAAGTAGGGCGAGCAGGAAGCGTCTTGTCTCTCGTGAAAAGCTAGGCTAGGCCTCAAGTTAG
CAGATCTATAAATGGCATCCTCCCCAATCCCAGGAGATTAAGCATTAGGGCGATGAGGGGTCTAC
TTCTTAGCTAGCACCTTTCGCACTACAGTTCTCGGGGCGGCTCAT
Found at i:154295 original size:27 final size:27
Alignment explanation
Indices: 154257--154331 Score: 134
Period size: 27 Copynumber: 2.8 Consensus size: 27
154247 TCTTGACTTG
154257 ATAGATCAAGAAGACTACAACATA-AAC
1 ATAGATCAAGAAGACTACAAC-TACAAC
154284 ATAGATCAAGAAGACTACAACTACAAC
1 ATAGATCAAGAAGACTACAACTACAAC
154311 ATAGATCAAGAAGACTACAAC
1 ATAGATCAAGAAGACTACAAC
154332 CGATACTGGA
Statistics
Matches: 47, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
26 2 0.04
27 45 0.96
ACGTcount: A:0.53, C:0.20, G:0.12, T:0.15
Consensus pattern (27 bp):
ATAGATCAAGAAGACTACAACTACAAC
Left flanking sequence: Indices 153757 -- 154256
GACTTTGGAGGTCCAGTGGAGTGGCTCCCCCAACGGTTGCGGCTTGCTGTAGTATGAAGTAGGTT
CCACAACCCAAAGCGATAAAATAAAAGAGAGTGAATAAAGAAGAGTCTTATTGGTTAGCAAAAGC
GAGAAGATCCACGCCCATTCCATCTTCCCTTCGATTCTGTCCCTACTTCCTTCCACCTAGAAACC
AGAAATTTCAATGAAGGCTAGCTAGAGTCAGGATGGGGTGGCTAAAGGCAATCTTATAAGACCGA
TCTCTATCCTATAAAATTCCCCGTAAACAGAGAAGAGCAGAAATAAAGCAAATCAGCAGTCTTAT
AGGCCCAGGAACGACATTCTTTTCTCTGGTCAGGAATGGCGGAACGATTAAGAAATTGCAATATA
TACCCTTTAGAGAACAGAACGTGGCCTCTAAAGCACGAATGAAAGCGAAAGAAGCCCGCATTCCC
TCTCTTCTTTCCCCCTATCGCAAGGGGCCTCGCCTTCTTGACTTG
Right flanking sequence: Indices 154332 -- 154831
CGATACTGGAGCGCCCTTCACTTCAACTAGCTAGTATACGAAACCTGGGGAGAGGTTCGATTTAC
CAGCTCAATCTCCTAAGGGCGGGGACGGGGGCTGGTTTTCCTGCGTCGGAGTTATATTAGAGCCT
TCCGTAGGATGGCTGATCTTGAGTTCCACGCCCTTCCAAGAGTATTTGAATAGAACATCAACTTT
TCCCGATATAGCAATCCTTTCTAGTTCCTTTCTATCCTTTCGATGGATCAACAAGGCTATGATAA
AGAAGGCCATAAAGAGATAGATGACGAAGAGTACTTGGCCACACAGGAAAGTCACCGTGAAATGA
AGGAGTTTATTGTTGTTAGACAATAAATCGATCCAGTATGCGAGGTTATTCATAATAATATTTAC
GAAAGATTCAATCCAGCCACAGGTTCCCCTACGGCTACCTTGTTACGACTTCACCCCAGTCGAAG
ACCCCTTCCTTCGTAGATCTCCGGATTTCACCCTAACCCCAAAAT
Found at i:155429 original size:33 final size:33
Alignment explanation
Indices: 155318--155425 Score: 207
Period size: 33 Copynumber: 3.3 Consensus size: 33
155308 TCGGCAAATT
155318 GGGAACCTGCGGGGGGGCTTCAGGTAGGGCATC
1 GGGAACCTGCGGGGGGGCTTCAGGTAGGGCATC
155351 GGGAACCTGCGGGGGGGCTTCAGGTAGGGCATC
1 GGGAACCTGCGGGGGGGCTTCAGGTAGGGCATC
*
155384 GGGAACCTGTGGGGGGGCTTCAGGTAGGGCATC
1 GGGAACCTGCGGGGGGGCTTCAGGTAGGGCATC
155417 GGGAACCTG
1 GGGAACCTG
155426 TGGGAGCGCC
Statistics
Matches: 74, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
33 74 1.00
ACGTcount: A:0.16, C:0.20, G:0.48, T:0.16
Consensus pattern (33 bp):
GGGAACCTGCGGGGGGGCTTCAGGTAGGGCATC
Left flanking sequence: Indices 154818 -- 155317
CCTAACCCCAAAATCTCTTTGATATAGAGAGACTCGTGCCCGCGTGCTGCAAGATCGAGTTTGAC
TTGCTCAACGAACTCGATCTCCTTTCTGTCTTTCTCCACCGGGCCCCATTCGGGGTTTTTGTCCA
GTGCGTCCCGCTTCTCGGAAAAGAAATCCAGAAAGTCCTCGGTAGGATTGGCAGCATACCCCCTC
AAGGCACGATTCCGAGACAGAATCTCTTGAAAGAGAAAAAAACATGAATGTTTTCTCTCCCGGAT
TTGCAGATCCCGGTTTTCGAAAGAGAGTAATCTGTAATATTCGCCCTGAGAGCTACTATTGTAGA
GTCCGCTCTTGACTTCTGACCAATATTCCCCCCTTGCTTTATCAAGTAGAAAAATGCTATTTTCC
CTTTCGAGCTTTCTTACTCGATTGAGCATAGAAGATTCCATACTTGTATTTTTGATTATGAAAAA
AGGTTCCCCCCTTCCTTGCCCAACTATTTCGGGTATCGGCAAATT
Right flanking sequence: Indices 155426 -- 155925
TGGGAGCGCCCCTTGTCTCCCGCTCAAAGTTTGTTGTAAACTATTAAAAAAAGGCATGGCTGCCT
CGAGTAATTCATTGTGCATTTTTATTGGTTGTAATTCATTCACTTCAAGACTGGTTCTGAACGCC
GTGTAACATCATCTTCAACCAACCTCCACCGTACTTTCGGTGCGACCACGGAGAAGGCTACCATA
TCCACATCAAGGTGACAGGATTCGAACCTATGGCCCTCTGTACCCAAAACAGATGCGCTGACCAG
ACTGCGCTACACCTCGTCTCACCACCCCGAAGCATATAGATCCACCCGATCGATGAACACTCAAA
CCGAACTCGCCCATCCTTTTGGGCACAGGGATGCGAGAACCAATCCGAGTAATCAACCGCTTTTT
TTTGAATCTGCCTCAAGCAAGCCACCCCAACCCTACCGCCAAAAAGCCGTCCGTATAGTGCAGGA
GCGCTCACATTTTTTTGCTTACTCTTTCACTTTCATTTCGAAATC
Found at i:158005 original size:30 final size:31
Alignment explanation
Indices: 157957--158014 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 31
157947 AGTGGTCAAC
*
157957 ACTCCTCTCCTTAACAGTCGAGTGGCTTGAA
1 ACTCCTCTCCTTAACAGTCAAGTGGCTTGAA
* *
157988 ACTCCTTTCCTT-GCAGTCAAGTGGCTT
1 ACTCCTCTCCTTAACAGTCAAGTGGCTT
158015 TCGCTCCTCT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
30 13 0.54
31 11 0.46
ACGTcount: A:0.19, C:0.29, G:0.19, T:0.33
Consensus pattern (31 bp):
ACTCCTCTCCTTAACAGTCAAGTGGCTTGAA
Left flanking sequence: Indices 157457 -- 157956
AGTAGTATCGACAAGAGGCTACATCAATAGCTGCAAATTTCGGGTAGGGTAGGCTTGGAGTCAGA
AGTCCTATTCTTCCCAACCAAATAAGCACTTTTGCAAAGTTCACCTTCCCGCGGTCAAAACAAGA
CTTACGGATAACAATCAGACCTTACCAGGGACAGGGACCAGACTATAGAGCCTAATTAAAAAGAA
TTCGGGCTTGCTTTTTCAATTCACATCTATGAGCGAGGATTCCTCTATCTCTTGCTCGCTTCGAT
CGGACTCTGACAGCTTAGGGAAGAATGATGGGTCGCTAACAAGGCCCCTAAATGACCGCTCAGAA
GGCCTACCTATTTTTTTTCCCAATCTGTCACTTGCTCGTCCCTCTCTCATGAAAATGGTCTCTCC
TCTCCTTCCTTATAGTCAAGCAAGTGGCTGGAGCGCCTCTCAAACCTTATAGTCAAGAGAGTGAA
AATGGCTTTTCACGCCTCTCCTTACAATAAAGTCGAGTGGTCAAC
Right flanking sequence: Indices 158015 -- 158514
TCGCTCCTCTCTTTCCTTATAGTCAAGAGAGTTGCTTCGCTCCTTTCCTTGCTTATAGTCAAGCA
AGTGGCTTTCACGCCTGAAAGCGGCTTTCAACTCCTCTCAAACCTTATAGTCAAGAGAGTTGCTA
AAAACTCCTTTCCTTGCAGTCAAGTGGCTTTCGCTCCTCTCCTTCCTTATAGTAAAGGCGAGTGG
CTTAAGGCTCCTTTCTTTCTACTAGTTCTTACATAAGCAATTTGCAGGAAGTAAACGAAGTCTTT
CCTTCCGAAATCCACTCCTGAAGTCACGTCTTTCAGTACTGGGACTGAAGTAAAGTACTTTCGAG
TTGCTCTTTGCCCAAAGCCCTCCTTCCGACTTAGTTAGAAATACCAACTCTAAATAGCTTTAGCA
TTTCTTGAGTGGAAAAGGTATTTATAGATTCTAGAGCTCAGGGGAAGGTTTGGAACCCTAGTAGC
AGAATGGAATCAGTTTACCGGGCTGACTTCCATGCCAACACGAGT
Found at i:158039 original size:33 final size:35
Alignment explanation
Indices: 157992--158077 Score: 86
Period size: 36 Copynumber: 2.5 Consensus size: 35
157982 CTTGAAACTC
** *
157992 CTTTCCTTGCAGTCAAGTG-GCT-TTCGCTCCTCT
1 CTTTCCTTATAGTCAAGAGAGCTCTTCGCTCCTCT
* *
158025 CTTTCCTTATAGTCAAGAGAGTTGCTTCGCTCCTTT
1 CTTTCCTTATAGTCAAGAGAGCT-CTTCGCTCCTCT
* *
158061 CCTTGCTTATAGTCAAG
1 CTTTCCTTATAGTCAAG
158078 CAAGTGGCTT
Statistics
Matches: 43, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
33 16 0.37
34 2 0.05
36 25 0.58
ACGTcount: A:0.15, C:0.28, G:0.17, T:0.40
Consensus pattern (35 bp):
CTTTCCTTATAGTCAAGAGAGCTCTTCGCTCCTCT
Left flanking sequence: Indices 157492 -- 157991
AATTTCGGGTAGGGTAGGCTTGGAGTCAGAAGTCCTATTCTTCCCAACCAAATAAGCACTTTTGC
AAAGTTCACCTTCCCGCGGTCAAAACAAGACTTACGGATAACAATCAGACCTTACCAGGGACAGG
GACCAGACTATAGAGCCTAATTAAAAAGAATTCGGGCTTGCTTTTTCAATTCACATCTATGAGCG
AGGATTCCTCTATCTCTTGCTCGCTTCGATCGGACTCTGACAGCTTAGGGAAGAATGATGGGTCG
CTAACAAGGCCCCTAAATGACCGCTCAGAAGGCCTACCTATTTTTTTTCCCAATCTGTCACTTGC
TCGTCCCTCTCTCATGAAAATGGTCTCTCCTCTCCTTCCTTATAGTCAAGCAAGTGGCTGGAGCG
CCTCTCAAACCTTATAGTCAAGAGAGTGAAAATGGCTTTTCACGCCTCTCCTTACAATAAAGTCG
AGTGGTCAACACTCCTCTCCTTAACAGTCGAGTGGCTTGAAACTC
Right flanking sequence: Indices 158078 -- 158577
CAAGTGGCTTTCACGCCTGAAAGCGGCTTTCAACTCCTCTCAAACCTTATAGTCAAGAGAGTTGC
TAAAAACTCCTTTCCTTGCAGTCAAGTGGCTTTCGCTCCTCTCCTTCCTTATAGTAAAGGCGAGT
GGCTTAAGGCTCCTTTCTTTCTACTAGTTCTTACATAAGCAATTTGCAGGAAGTAAACGAAGTCT
TTCCTTCCGAAATCCACTCCTGAAGTCACGTCTTTCAGTACTGGGACTGAAGTAAAGTACTTTCG
AGTTGCTCTTTGCCCAAAGCCCTCCTTCCGACTTAGTTAGAAATACCAACTCTAAATAGCTTTAG
CATTTCTTGAGTGGAAAAGGTATTTATAGATTCTAGAGCTCAGGGGAAGGTTTGGAACCCTAGTA
GCAGAATGGAATCAGTTTACCGGGCTGACTTCCATGCCAACACGAGTAGTTTAACTCATCACTAC
CTCGTAAGGGCGTTGAGAATTGTTTTTGCTTTTTTTGCTAAAAAC
Found at i:161866 original size:42 final size:42
Alignment explanation
Indices: 161819--161953 Score: 208
Period size: 42 Copynumber: 3.3 Consensus size: 42
161809 GCAGCTGCGC
161819 GAAAGCCGTTGCGCAACAAGCAGCGGATGAGCGCACTAGCGT
1 GAAAGCCGTTGCGCAACAAGCAGCGGATGAGCGCACTAGCGT
* * *
161861 GAAAGCCGTTGCGCAACAAGCA----ACG-GCTCACTAGCGC
1 GAAAGCCGTTGCGCAACAAGCAGCGGATGAGCGCACTAGCGT
161898 GAAAGCCGTTGCGCAACAAGCAGCGGATGAGCGCACTAGCGT
1 GAAAGCCGTTGCGCAACAAGCAGCGGATGAGCGCACTAGCGT
161940 GAAAGCCGTTGCGC
1 GAAAGCCGTTGCGC
161954 GTTAGTCACG
Statistics
Matches: 82, Mismatches: 6, Indels: 10
0.84 0.06 0.10
Matches are distributed among these distances:
37 32 0.39
38 2 0.02
41 2 0.02
42 46 0.56
ACGTcount: A:0.28, C:0.28, G:0.32, T:0.12
Consensus pattern (42 bp):
GAAAGCCGTTGCGCAACAAGCAGCGGATGAGCGCACTAGCGT
Left flanking sequence: Indices 161319 -- 161818
CCTTTCGCCCAACATGATCACGAACGAAGACAGAGAATTGCGTAGATAGGAGGACGAAACGAACC
AACCCACTTGTCCTGATCGGAAGAAGAAAGAAAGAGAATGGTGGCTCCTTTTGCCCAGGGGACAT
CGTCGGAGAACAATGTCGGGGACAGGGTGAGAACCTTCCGTTGGTTACGCCCTTTAAGTGTCGGT
TCTTCCATATTTAGATATGGAGATAGATCCATATAGAGATCTATATCTTTCTATCGATAAATAGA
TCTATTGAGAAATGGATATTGATCTGGTTTCAAGATCTATGAACAAGAGAGATCCCTAAATATCC
ATTTGAGAAAATAGATGAATAGATAGGGCGAAGCCAGCTGAAGGAAGGTCGCGTTAGCGCCCCCT
ATTTCACTAAAGCAAGAAGGGAGAAAGTTGACTTTGAGAAAGAAGGGCTTCTATTTAGATTAGTT
TCTTAGTAAAAGATAAGGCAAGAAGCAAGGGCGTAGCAGCTGCGC
Right flanking sequence: Indices 161954 -- 162453
GTTAGTCACGCGCATCCGTTTTCTTGCTGCATCCATTTTCTTGCTGTCACGCGCATCCGTTTTCT
TGCTGCATCCATTTTCTTGCTGTCACGCGCATCCGTTTTCTTGCTGCATCCCTTTTCTTGCTCGT
TAGCGCCCCCCTACCCCTATTATTTAGATTATAGTCATAAAGGAACTAAAGGAAATTTGACAACC
TTACTAATAGTAATAGAAAGGGGATTCTTCAAATATCCCATGTTGTAGGGGCTTCAAAGAAAGCT
TGTAGTTTAGGGGTGCGCAGGTTTGGAACCCTATACAAGGGGCTAGCGCGCAATGGCTTTCTCTG
ATAGAGGCTCGCTTCTTCAAGTTCAAGTTCCGCTTGCTGCTTTTCATTTTGATAGGAGTAGGTGC
TTGCAGCTCGCTCGCTGTCTACTAAATGAGCCTTCACTGCCCGCCCGGCCCCTATCTTTAATCTT
AAGTAAAGTGAAGTCAAATCAATGAAGTGAACAGCCCAACCTCTT
Found at i:161985 original size:17 final size:17
Alignment explanation
Indices: 161965--162080 Score: 79
Period size: 17 Copynumber: 6.0 Consensus size: 17
161955 TTAGTCACGC
161965 GCATCCGTTTTCTTGCT
1 GCATCCGTTTTCTTGCT
*
161982 GCATCCATTTTCTTGCTGT
1 GCATCCGTTTTCTTGC--T
162001 CACGCGCATCCGTTTTCTTGCT
1 -----GCATCCGTTTTCTTGCT
*
162023 GCATCCATTTTCTTGCTGT
1 GCATCCGTTTTCTTGC--T
162042 CACGCGCATCCGTTTTCTTGCT
1 -----GCATCCGTTTTCTTGCT
*
162064 GCATCCCTTTTCTTGCT
1 GCATCCGTTTTCTTGCT
162081 CGTTAGCGCC
Statistics
Matches: 80, Mismatches: 5, Indels: 28
0.71 0.04 0.25
Matches are distributed among these distances:
17 46 0.57
19 2 0.03
22 2 0.03
24 30 0.38
ACGTcount: A:0.09, C:0.32, G:0.16, T:0.43
Consensus pattern (17 bp):
GCATCCGTTTTCTTGCT
Left flanking sequence: Indices 161465 -- 161964
CGGGGACAGGGTGAGAACCTTCCGTTGGTTACGCCCTTTAAGTGTCGGTTCTTCCATATTTAGAT
ATGGAGATAGATCCATATAGAGATCTATATCTTTCTATCGATAAATAGATCTATTGAGAAATGGA
TATTGATCTGGTTTCAAGATCTATGAACAAGAGAGATCCCTAAATATCCATTTGAGAAAATAGAT
GAATAGATAGGGCGAAGCCAGCTGAAGGAAGGTCGCGTTAGCGCCCCCTATTTCACTAAAGCAAG
AAGGGAGAAAGTTGACTTTGAGAAAGAAGGGCTTCTATTTAGATTAGTTTCTTAGTAAAAGATAA
GGCAAGAAGCAAGGGCGTAGCAGCTGCGCGAAAGCCGTTGCGCAACAAGCAGCGGATGAGCGCAC
TAGCGTGAAAGCCGTTGCGCAACAAGCAACGGCTCACTAGCGCGAAAGCCGTTGCGCAACAAGCA
GCGGATGAGCGCACTAGCGTGAAAGCCGTTGCGCGTTAGTCACGC
Right flanking sequence: Indices 162081 -- 162580
CGTTAGCGCCCCCCTACCCCTATTATTTAGATTATAGTCATAAAGGAACTAAAGGAAATTTGACA
ACCTTACTAATAGTAATAGAAAGGGGATTCTTCAAATATCCCATGTTGTAGGGGCTTCAAAGAAA
GCTTGTAGTTTAGGGGTGCGCAGGTTTGGAACCCTATACAAGGGGCTAGCGCGCAATGGCTTTCT
CTGATAGAGGCTCGCTTCTTCAAGTTCAAGTTCCGCTTGCTGCTTTTCATTTTGATAGGAGTAGG
TGCTTGCAGCTCGCTCGCTGTCTACTAAATGAGCCTTCACTGCCCGCCCGGCCCCTATCTTTAAT
CTTAAGTAAAGTGAAGTCAAATCAATGAAGTGAACAGCCCAACCTCTTTGTTTGAAGCTTTGCCA
GGAAGCTTCTACTTGTTGAAGCTTTGTTTCCCCTAATTCCGAAACACAACAATAGACTTGCCACT
ATAGTCTAGGAAAAAGCTTCTCTTTGATAAGCGGTCATAGGGGAG
Found at i:162015 original size:41 final size:41
Alignment explanation
Indices: 161958--162080 Score: 237
Period size: 41 Copynumber: 3.0 Consensus size: 41
161948 TTGCGCGTTA
161958 GTCACGCGCATCCGTTTTCTTGCTGCATCCATTTTCTTGCT
1 GTCACGCGCATCCGTTTTCTTGCTGCATCCATTTTCTTGCT
161999 GTCACGCGCATCCGTTTTCTTGCTGCATCCATTTTCTTGCT
1 GTCACGCGCATCCGTTTTCTTGCTGCATCCATTTTCTTGCT
*
162040 GTCACGCGCATCCGTTTTCTTGCTGCATCCCTTTTCTTGCT
1 GTCACGCGCATCCGTTTTCTTGCTGCATCCATTTTCTTGCT
162081 CGTTAGCGCC
Statistics
Matches: 81, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
41 81 1.00
ACGTcount: A:0.09, C:0.33, G:0.17, T:0.41
Consensus pattern (41 bp):
GTCACGCGCATCCGTTTTCTTGCTGCATCCATTTTCTTGCT
Left flanking sequence: Indices 161458 -- 161957
ACAATGTCGGGGACAGGGTGAGAACCTTCCGTTGGTTACGCCCTTTAAGTGTCGGTTCTTCCATA
TTTAGATATGGAGATAGATCCATATAGAGATCTATATCTTTCTATCGATAAATAGATCTATTGAG
AAATGGATATTGATCTGGTTTCAAGATCTATGAACAAGAGAGATCCCTAAATATCCATTTGAGAA
AATAGATGAATAGATAGGGCGAAGCCAGCTGAAGGAAGGTCGCGTTAGCGCCCCCTATTTCACTA
AAGCAAGAAGGGAGAAAGTTGACTTTGAGAAAGAAGGGCTTCTATTTAGATTAGTTTCTTAGTAA
AAGATAAGGCAAGAAGCAAGGGCGTAGCAGCTGCGCGAAAGCCGTTGCGCAACAAGCAGCGGATG
AGCGCACTAGCGTGAAAGCCGTTGCGCAACAAGCAACGGCTCACTAGCGCGAAAGCCGTTGCGCA
ACAAGCAGCGGATGAGCGCACTAGCGTGAAAGCCGTTGCGCGTTA
Right flanking sequence: Indices 162081 -- 162580
CGTTAGCGCCCCCCTACCCCTATTATTTAGATTATAGTCATAAAGGAACTAAAGGAAATTTGACA
ACCTTACTAATAGTAATAGAAAGGGGATTCTTCAAATATCCCATGTTGTAGGGGCTTCAAAGAAA
GCTTGTAGTTTAGGGGTGCGCAGGTTTGGAACCCTATACAAGGGGCTAGCGCGCAATGGCTTTCT
CTGATAGAGGCTCGCTTCTTCAAGTTCAAGTTCCGCTTGCTGCTTTTCATTTTGATAGGAGTAGG
TGCTTGCAGCTCGCTCGCTGTCTACTAAATGAGCCTTCACTGCCCGCCCGGCCCCTATCTTTAAT
CTTAAGTAAAGTGAAGTCAAATCAATGAAGTGAACAGCCCAACCTCTTTGTTTGAAGCTTTGCCA
GGAAGCTTCTACTTGTTGAAGCTTTGTTTCCCCTAATTCCGAAACACAACAATAGACTTGCCACT
ATAGTCTAGGAAAAAGCTTCTCTTTGATAAGCGGTCATAGGGGAG
Found at i:162016 original size:24 final size:24
Alignment explanation
Indices: 161982--162064 Score: 99
Period size: 24 Copynumber: 3.8 Consensus size: 24
161972 TTTTCTTGCT
161982 GCATCCATTTTCTTGCTGTCACGC
1 GCATCCATTTTCTTGCTGTCACGC
*
162006 GCATCCGTTTTCTTGC--T-----
1 GCATCCATTTTCTTGCTGTCACGC
162023 GCATCCATTTTCTTGCTGTCACGC
1 GCATCCATTTTCTTGCTGTCACGC
*
162047 GCATCCGTTTTCTTGCTG
1 GCATCCATTTTCTTGCTG
162065 CATCCCTTTT
Statistics
Matches: 49, Mismatches: 3, Indels: 14
0.74 0.05 0.21
Matches are distributed among these distances:
17 15 0.31
19 1 0.02
22 1 0.02
24 32 0.65
ACGTcount: A:0.10, C:0.31, G:0.18, T:0.41
Consensus pattern (24 bp):
GCATCCATTTTCTTGCTGTCACGC
Left flanking sequence: Indices 161482 -- 161981
CCTTCCGTTGGTTACGCCCTTTAAGTGTCGGTTCTTCCATATTTAGATATGGAGATAGATCCATA
TAGAGATCTATATCTTTCTATCGATAAATAGATCTATTGAGAAATGGATATTGATCTGGTTTCAA
GATCTATGAACAAGAGAGATCCCTAAATATCCATTTGAGAAAATAGATGAATAGATAGGGCGAAG
CCAGCTGAAGGAAGGTCGCGTTAGCGCCCCCTATTTCACTAAAGCAAGAAGGGAGAAAGTTGACT
TTGAGAAAGAAGGGCTTCTATTTAGATTAGTTTCTTAGTAAAAGATAAGGCAAGAAGCAAGGGCG
TAGCAGCTGCGCGAAAGCCGTTGCGCAACAAGCAGCGGATGAGCGCACTAGCGTGAAAGCCGTTG
CGCAACAAGCAACGGCTCACTAGCGCGAAAGCCGTTGCGCAACAAGCAGCGGATGAGCGCACTAG
CGTGAAAGCCGTTGCGCGTTAGTCACGCGCATCCGTTTTCTTGCT
Right flanking sequence: Indices 162065 -- 162564
CATCCCTTTTCTTGCTCGTTAGCGCCCCCCTACCCCTATTATTTAGATTATAGTCATAAAGGAAC
TAAAGGAAATTTGACAACCTTACTAATAGTAATAGAAAGGGGATTCTTCAAATATCCCATGTTGT
AGGGGCTTCAAAGAAAGCTTGTAGTTTAGGGGTGCGCAGGTTTGGAACCCTATACAAGGGGCTAG
CGCGCAATGGCTTTCTCTGATAGAGGCTCGCTTCTTCAAGTTCAAGTTCCGCTTGCTGCTTTTCA
TTTTGATAGGAGTAGGTGCTTGCAGCTCGCTCGCTGTCTACTAAATGAGCCTTCACTGCCCGCCC
GGCCCCTATCTTTAATCTTAAGTAAAGTGAAGTCAAATCAATGAAGTGAACAGCCCAACCTCTTT
GTTTGAAGCTTTGCCAGGAAGCTTCTACTTGTTGAAGCTTTGTTTCCCCTAATTCCGAAACACAA
CAATAGACTTGCCACTATAGTCTAGGAAAAAGCTTCTCTTTGATA
Found at i:166204 original size:30 final size:31
Alignment explanation
Indices: 166156--166213 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 31
166146 AGTGGTCAAC
*
166156 ACTCCTCTCCTTAACAGTCGAGTGGCTTGAA
1 ACTCCTCTCCTTAACAGTCAAGTGGCTTGAA
* *
166187 ACTCCTTTCCTT-GCAGTCAAGTGGCTT
1 ACTCCTCTCCTTAACAGTCAAGTGGCTT
166214 TCGCTCCTCT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
30 13 0.54
31 11 0.46
ACGTcount: A:0.19, C:0.29, G:0.19, T:0.33
Consensus pattern (31 bp):
ACTCCTCTCCTTAACAGTCAAGTGGCTTGAA
Left flanking sequence: Indices 165656 -- 166155
GTAGATCTACTAGACTACAAAGAAAGAAGTTGGTAGCAACAGAACTCTTTCTAAACCACTAGAGA
CAGTCACCTACAATAATCAGTCTACCTACGCAACATTGTAGAGAGACGTTCGACTCCACGTGTCC
GCTGAACTGTTCCGAAGTAGCAAGACGAGTGAATGAAGGCGCTGTAAGCAGTAGTGAATACTTTT
TCCATGGAGACAAACCCCTCCGGCGGAAACGTTCCCTTTGTCACTATAGACTGAACTCGCTGTGA
ACCTTTTCGATTATTAGTAGCGGCTCGTGAAGTAGCCCTCTTTCTTTACAAAAAAAGGATACATG
CCCCTTTCCAACCAGTCAAGTGGCGTTCACGCCCCTCTCCTGTAAGTCGAGTCGCTTTTCGCCCC
TCTCCTTCCTTATAGTCAAGCAAGTGGCTGGAGCGCCTCTCAAACCTTATAGTCAAGAGAGTGAA
AATGGCTTTTCACGCCTCTCCTTACAATAAAGTCGAGTGGTCAAC
Right flanking sequence: Indices 166214 -- 166713
TCGCTCCTCTCTTTCCTTATAGTCAAGAGAGTTGCTTCGCTCCTTTCCTTGCTTATAGTCAAGCA
AGTGGCTTTCACGCCTGAAAGCGGCTTTCAACTCCTCTCAAACCTTATAGTCAAGAGAGTTGCTA
AAAACTCCTTTCCTTGCAGTCAAGTGGCTTTCGCTCCTCTCCTTCCTTACAATCAAGCGAGTGGC
TTAGAGCTCCTCTCTCTTTGTTTCGATGAAAGCCTCAACGCTCGCGTTCTACGGGGAACTTTTTT
GACTATTTACCTTCGCCGGAAGCAAAGGGCGAAAACTCCAAAACTCGTAAATAAAGGGTGCTTGT
GTTGTGGTTTTGAGTTCCTTGGCTTGTGTTCTAATAGTAACCACAGGAAGAAAGCGGGGAGCATG
GTCCCTAGTCTCGTTTTTGCCGAGCCTGATTCTCTATGGCATGGACGTCTTTGATTGGATGGAGA
CAGATATATAGAAAGTGTGCAGTGAGGGTGCTTGTAAATCACTAG
Found at i:166238 original size:33 final size:35
Alignment explanation
Indices: 166191--166276 Score: 86
Period size: 36 Copynumber: 2.5 Consensus size: 35
166181 CTTGAAACTC
** *
166191 CTTTCCTTGCAGTCAAGTG-GCT-TTCGCTCCTCT
1 CTTTCCTTATAGTCAAGAGAGCTCTTCGCTCCTCT
* *
166224 CTTTCCTTATAGTCAAGAGAGTTGCTTCGCTCCTTT
1 CTTTCCTTATAGTCAAGAGAGCT-CTTCGCTCCTCT
* *
166260 CCTTGCTTATAGTCAAG
1 CTTTCCTTATAGTCAAG
166277 CAAGTGGCTT
Statistics
Matches: 43, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
33 16 0.37
34 2 0.05
36 25 0.58
ACGTcount: A:0.15, C:0.28, G:0.17, T:0.40
Consensus pattern (35 bp):
CTTTCCTTATAGTCAAGAGAGCTCTTCGCTCCTCT
Left flanking sequence: Indices 165691 -- 166190
GCAACAGAACTCTTTCTAAACCACTAGAGACAGTCACCTACAATAATCAGTCTACCTACGCAACA
TTGTAGAGAGACGTTCGACTCCACGTGTCCGCTGAACTGTTCCGAAGTAGCAAGACGAGTGAATG
AAGGCGCTGTAAGCAGTAGTGAATACTTTTTCCATGGAGACAAACCCCTCCGGCGGAAACGTTCC
CTTTGTCACTATAGACTGAACTCGCTGTGAACCTTTTCGATTATTAGTAGCGGCTCGTGAAGTAG
CCCTCTTTCTTTACAAAAAAAGGATACATGCCCCTTTCCAACCAGTCAAGTGGCGTTCACGCCCC
TCTCCTGTAAGTCGAGTCGCTTTTCGCCCCTCTCCTTCCTTATAGTCAAGCAAGTGGCTGGAGCG
CCTCTCAAACCTTATAGTCAAGAGAGTGAAAATGGCTTTTCACGCCTCTCCTTACAATAAAGTCG
AGTGGTCAACACTCCTCTCCTTAACAGTCGAGTGGCTTGAAACTC
Right flanking sequence: Indices 166277 -- 166776
CAAGTGGCTTTCACGCCTGAAAGCGGCTTTCAACTCCTCTCAAACCTTATAGTCAAGAGAGTTGC
TAAAAACTCCTTTCCTTGCAGTCAAGTGGCTTTCGCTCCTCTCCTTCCTTACAATCAAGCGAGTG
GCTTAGAGCTCCTCTCTCTTTGTTTCGATGAAAGCCTCAACGCTCGCGTTCTACGGGGAACTTTT
TTGACTATTTACCTTCGCCGGAAGCAAAGGGCGAAAACTCCAAAACTCGTAAATAAAGGGTGCTT
GTGTTGTGGTTTTGAGTTCCTTGGCTTGTGTTCTAATAGTAACCACAGGAAGAAAGCGGGGAGCA
TGGTCCCTAGTCTCGTTTTTGCCGAGCCTGATTCTCTATGGCATGGACGTCTTTGATTGGATGGA
GACAGATATATAGAAAGTGTGCAGTGAGGGTGCTTGTAAATCACTAGGTAGCCTAGCTCGACCCA
AGCAATGCCCAAAAGTCCCATGCCTTTCTTGGTCGGACCAACCCA
Found at i:167863 original size:17 final size:17
Alignment explanation
Indices: 167841--167915 Score: 60
Period size: 17 Copynumber: 4.0 Consensus size: 17
167831 AGCGCTAACG
167841 AGCAAGAAAAGGGATGC
1 AGCAAGAAAAGGGATGC
*
167858 AGCAAGAAAACGGATGCGCGTGAC
1 AGCAAGAAAA--G--G-G-ATG-C
*
167882 AGCAAGAAAATGGATGC
1 AGCAAGAAAAGGGATGC
*
167899 AGCAAGAAAACGGATGC
1 AGCAAGAAAAGGGATGC
167916 GCGTGACTAA
Statistics
Matches: 47, Mismatches: 4, Indels: 14
0.72 0.06 0.22
Matches are distributed among these distances:
17 27 0.57
18 2 0.04
19 2 0.04
20 1 0.02
21 1 0.02
22 1 0.02
23 2 0.04
24 11 0.23
ACGTcount: A:0.44, C:0.16, G:0.32, T:0.08
Consensus pattern (17 bp):
AGCAAGAAAAGGGATGC
Left flanking sequence: Indices 167341 -- 167840
GTGGTTTCTGAACCCATTGAGATGACCCAAGAATTTCGCTATTTCGATTTTGCTAGTCCTTGGGA
ACAGCGTAGCGACGGATAATTCAGAATCAGAATAGGTCCAGTCCAGGGGACAAATCAATAGGAAA
TGCTATTTGCTTCGTAAGAATAAGAATTCACTTCTATGAAATGAAAGAGTTTCACGGGAATTGTC
TTGATCGTCGGATATCATTGAGAAAGAAATAGGAAGAAGTGTTATCGAACGATTTCCTGCAATTC
TTCCCAGTATGGAATGAGTAAAGAATCAAGCTACAAGTCTCGATCTATACGAAACGCACTGGTTT
TTTTCTTTCTTTCGGTTTCATTGATAACAGAAAAGACTGACTCTAAAGGGGCGCTAGCGCTTGAC
TAATAAGATATCAAAGGGGCCTGAAAAAACGTAATAGGCTGCTACTCTAGGCTCGCTTCGCTTCT
TCAAGCTCCGCCCCTTCTTTCAAAAATCAACAAAGAGCGCTAACG
Right flanking sequence: Indices 167916 -- 168415
GCGTGACTAACGCGCAACGGCTTTCACGCTAGTGCGCTCATCCGCTGCTTGTTGCGCAACGGCTT
TCGCGCTAGTGAGCCGTTGCTTGTTGCGCAACGGCTTTCACGCTAGTGCGCTCATCCGCTGCTTG
TTGCGCAACGGCTTTCGCGCAGCTGCTACGCCCTTGCTTCTTGCCTTATCTTACTTAGTAAAGCA
ACCTTTCGCGCTAGGCGCTCACCTTTTTTGTCTGGGTGGAAGCTGGCGGGCAGGGCTTGCTTAAC
CGGATACACGGAATTGGGATCTCTGTTGCATGCAAATCTTTCTATCGGGAAAGCCTCGCTTATTC
AAAGGGCTTCTTATTTAGAACCCTTTTTTTTGCTTAGTTGTAAGTAAGCGTTGGTAGGAGCGGCG
GGATGATGATGAGTATATAAATCAATAAAGACCAAAAAAGAATAAATGGCAAGAGAAATTAGATA
TCTATGGAAAAAATAACGATGTAGAGGGCGACTGAAAAGGAGGCT
Found at i:167898 original size:41 final size:41
Alignment explanation
Indices: 167841--167922 Score: 155
Period size: 41 Copynumber: 2.0 Consensus size: 41
167831 AGCGCTAACG
167841 AGCAAGAAAAGGGATGCAGCAAGAAAACGGATGCGCGTGAC
1 AGCAAGAAAAGGGATGCAGCAAGAAAACGGATGCGCGTGAC
*
167882 AGCAAGAAAATGGATGCAGCAAGAAAACGGATGCGCGTGAC
1 AGCAAGAAAAGGGATGCAGCAAGAAAACGGATGCGCGTGAC
167923 TAACGCGCAA
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.41, C:0.17, G:0.33, T:0.09
Consensus pattern (41 bp):
AGCAAGAAAAGGGATGCAGCAAGAAAACGGATGCGCGTGAC
Left flanking sequence: Indices 167341 -- 167840
GTGGTTTCTGAACCCATTGAGATGACCCAAGAATTTCGCTATTTCGATTTTGCTAGTCCTTGGGA
ACAGCGTAGCGACGGATAATTCAGAATCAGAATAGGTCCAGTCCAGGGGACAAATCAATAGGAAA
TGCTATTTGCTTCGTAAGAATAAGAATTCACTTCTATGAAATGAAAGAGTTTCACGGGAATTGTC
TTGATCGTCGGATATCATTGAGAAAGAAATAGGAAGAAGTGTTATCGAACGATTTCCTGCAATTC
TTCCCAGTATGGAATGAGTAAAGAATCAAGCTACAAGTCTCGATCTATACGAAACGCACTGGTTT
TTTTCTTTCTTTCGGTTTCATTGATAACAGAAAAGACTGACTCTAAAGGGGCGCTAGCGCTTGAC
TAATAAGATATCAAAGGGGCCTGAAAAAACGTAATAGGCTGCTACTCTAGGCTCGCTTCGCTTCT
TCAAGCTCCGCCCCTTCTTTCAAAAATCAACAAAGAGCGCTAACG
Right flanking sequence: Indices 167923 -- 168422
TAACGCGCAACGGCTTTCACGCTAGTGCGCTCATCCGCTGCTTGTTGCGCAACGGCTTTCGCGCT
AGTGAGCCGTTGCTTGTTGCGCAACGGCTTTCACGCTAGTGCGCTCATCCGCTGCTTGTTGCGCA
ACGGCTTTCGCGCAGCTGCTACGCCCTTGCTTCTTGCCTTATCTTACTTAGTAAAGCAACCTTTC
GCGCTAGGCGCTCACCTTTTTTGTCTGGGTGGAAGCTGGCGGGCAGGGCTTGCTTAACCGGATAC
ACGGAATTGGGATCTCTGTTGCATGCAAATCTTTCTATCGGGAAAGCCTCGCTTATTCAAAGGGC
TTCTTATTTAGAACCCTTTTTTTTGCTTAGTTGTAAGTAAGCGTTGGTAGGAGCGGCGGGATGAT
GATGAGTATATAAATCAATAAAGACCAAAAAAGAATAAATGGCAAGAGAAATTAGATATCTATGG
AAAAAATAACGATGTAGAGGGCGACTGAAAAGGAGGCTCGACCTA
Found at i:167988 original size:42 final size:42
Alignment explanation
Indices: 167927--168061 Score: 208
Period size: 42 Copynumber: 3.3 Consensus size: 42
167917 CGTGACTAAC
167927 GCGCAACGGCTTTCACGCTAGTGCGCTCATCCGCTGCTTGTT
1 GCGCAACGGCTTTCACGCTAGTGCGCTCATCCGCTGCTTGTT
* * *
167969 GCGCAACGGCTTTCGCGCTAGT--G---AGCCGTTGCTTGTT
1 GCGCAACGGCTTTCACGCTAGTGCGCTCATCCGCTGCTTGTT
168006 GCGCAACGGCTTTCACGCTAGTGCGCTCATCCGCTGCTTGTT
1 GCGCAACGGCTTTCACGCTAGTGCGCTCATCCGCTGCTTGTT
168048 GCGCAACGGCTTTC
1 GCGCAACGGCTTTC
168062 GCGCAGCTGC
Statistics
Matches: 82, Mismatches: 6, Indels: 10
0.84 0.06 0.10
Matches are distributed among these distances:
37 33 0.40
39 1 0.01
40 1 0.01
42 47 0.57
ACGTcount: A:0.12, C:0.32, G:0.28, T:0.28
Consensus pattern (42 bp):
GCGCAACGGCTTTCACGCTAGTGCGCTCATCCGCTGCTTGTT
Left flanking sequence: Indices 167427 -- 167926
CAGAATCAGAATAGGTCCAGTCCAGGGGACAAATCAATAGGAAATGCTATTTGCTTCGTAAGAAT
AAGAATTCACTTCTATGAAATGAAAGAGTTTCACGGGAATTGTCTTGATCGTCGGATATCATTGA
GAAAGAAATAGGAAGAAGTGTTATCGAACGATTTCCTGCAATTCTTCCCAGTATGGAATGAGTAA
AGAATCAAGCTACAAGTCTCGATCTATACGAAACGCACTGGTTTTTTTCTTTCTTTCGGTTTCAT
TGATAACAGAAAAGACTGACTCTAAAGGGGCGCTAGCGCTTGACTAATAAGATATCAAAGGGGCC
TGAAAAAACGTAATAGGCTGCTACTCTAGGCTCGCTTCGCTTCTTCAAGCTCCGCCCCTTCTTTC
AAAAATCAACAAAGAGCGCTAACGAGCAAGAAAAGGGATGCAGCAAGAAAACGGATGCGCGTGAC
AGCAAGAAAATGGATGCAGCAAGAAAACGGATGCGCGTGACTAAC
Right flanking sequence: Indices 168062 -- 168561
GCGCAGCTGCTACGCCCTTGCTTCTTGCCTTATCTTACTTAGTAAAGCAACCTTTCGCGCTAGGC
GCTCACCTTTTTTGTCTGGGTGGAAGCTGGCGGGCAGGGCTTGCTTAACCGGATACACGGAATTG
GGATCTCTGTTGCATGCAAATCTTTCTATCGGGAAAGCCTCGCTTATTCAAAGGGCTTCTTATTT
AGAACCCTTTTTTTTGCTTAGTTGTAAGTAAGCGTTGGTAGGAGCGGCGGGATGATGATGAGTAT
ATAAATCAATAAAGACCAAAAAAGAATAAATGGCAAGAGAAATTAGATATCTATGGAAAAAATAA
CGATGTAGAGGGCGACTGAAAAGGAGGCTCGACCTACAGGGAGAGTGGTGGGCAGGGATTCTCTA
CAATGACACTGTTGTAGACCAATTGAAAGGGATGTAGCGCAGGTAGCGCCTTTGTTTTGGGTAAA
AAATGTCACGGGTTCAAATCCTGTCATCCCTACCTATTCTTCTCC
Found at i:172489 original size:56 final size:56
Alignment explanation
Indices: 172384--172489 Score: 185
Period size: 56 Copynumber: 1.9 Consensus size: 56
172374 TAAGGAGAGA
* **
172384 GGCTTTCACTCCTCTCTTTCCTTATAGTCAAGAGAGTTGCTAACGCTCCTGAAAGC
1 GGCTTTCACGCCTCTCTTTCCTTATAGTCAAGAGAGTTGCTAAAACTCCTGAAAGC
172440 GGCTTTCACGCCTCTCTTTCCTTATAGTCAAGAGAGTTGCTAAAACTCCT
1 GGCTTTCACGCCTCTCTTTCCTTATAGTCAAGAGAGTTGCTAAAACTCCT
172490 CTCCTCTTTT
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
56 47 1.00
ACGTcount: A:0.22, C:0.28, G:0.17, T:0.33
Consensus pattern (56 bp):
GGCTTTCACGCCTCTCTTTCCTTATAGTCAAGAGAGTTGCTAAAACTCCTGAAAGC
Left flanking sequence: Indices 171884 -- 172383
TGAAAGATAAGCATACACAGAAAGAACAAATTGACCCTCTACCAGAATATGATCTCTAGGTTTAC
CAAATCTTTCTCAACCTTTCTCATAGGGTTAAGGGTAGCAGGCTATTCAACCAACCATAAGTAAG
AGCTTTAAGCTAGCGCTCCTCACCGCCCTGCTAAGCAACAAGGCTCAGGAGAACTAAGGGAGGGG
GTGGAGTGAGCCTAGAGTAGAGGCCTCTGAGACTCTCAACTCATACCAGGGCAGGCAGGGAAAGG
CTGAGACTACCGATACGTATCAATACGTACCGATACCGAGCCGGGGTTGATGAAAGATCATAGGG
TATCTATGCCTGCTTCACCACAAAATGAAATCCAATCTGATTGTGATGCCTGACCGGGAAAACGC
ACGAAAAGAGACCCAGATAGAGTTAACATACTCGTTTACAATACAACATTAATTCAAAACAGACA
TTGATATCAAAATAAAGGTTCCATTCCTCTCCTGTTAAGGAGAGA
Right flanking sequence: Indices 172490 -- 172989
CTCCTCTTTTCTTTTTTCTGGATACAAAAAGCGGAAAGGGCTGGTTCCATGAAGTCGATCAATCC
GCGCCCGGACCCTTAGTGGTCGAGTCGAGTCATGTACAACTTGTACACCGATATCTGGGAAAGCA
ACAGCACGAAAGAAAGGGGCAGGAAAGAGCCGTAGAGAGGGCAAAGCTGGCATAATAGCCAGGCT
AAGCAGCGATCTCATATAGCCTCAACCAAGCGGTCAGCTAAGCGGTTTTGAAGACACAGATCGAT
AAGATTGGGAGCTGACTGGTCTCTCGAATGGAGCTTTTGATCGCCTAGTACCGGGCAGGGGGAAT
CACCATTGATCTTATCTTACGGAATAACATCTTCCCGCCCCTCTCCTTACAGTCGAGCGGTCTTA
CCCCTTCTTGGATCTCAAATCAAAAGAACGCCTGGGAATCGGAGAAGCGATGGGAGATGATTGCT
ATGAGCGAGGTCCAGTCTTCCTTTCAAGAGATGCCTTCACGGCTC
Found at i:175745 original size:13 final size:13
Alignment explanation
Indices: 175729--175755 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
175719 TCCGCAACCC
175729 GTCTACCTACCTA
1 GTCTACCTACCTA
175742 GTCTACCTACCTA
1 GTCTACCTACCTA
175755 G
1 G
175756 AGGCTATCTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.37, G:0.11, T:0.30
Consensus pattern (13 bp):
GTCTACCTACCTA
Left flanking sequence: Indices 175229 -- 175728
GATATTTTCACTCTTGAGAGATCCTTTGAAGACGACCAGGGGGATAGAAGCCCACGGAGCGGTAG
GCTAAGCCGGAAAGGGAGAGAGTTGAGTTAGATCCGATGCCATTGATTCTGCTGGAGGAAGATCC
GCAGGAGAGAGAATTGCTTTTGTTGATTAAATAAAATAAGCTCTTGCTCACTTCATCCCTCTCCT
TTCAGGTGCAGATGAATATGCTGTTTAGCTTGGGACTAGGGCTTGTGATCCTTCTTTTAACGGTA
GAACAAAAATAACAAAGGAGCTCTCCTAACCTAAGCAAGCTGCGGAGTCGTAGACCATTGCTTTA
AAGACGGGATGGAATCTTTCTTTCTTTCTGATCTTAAGCTGTGAACTCATGGTCAAATGGCTTCC
GAAGTGGGCTTTCCCTTTTCTATGGTAGCATGGTCTTCTCCTAGGGTTTCTCTTGGTGGAGTAAA
CCTTTTGAAGAAAAGCATAGTGCAGACCCCGAGTCTCCGCAACCC
Right flanking sequence: Indices 175756 -- 176255
AGGCTATCTTAATAGGCTGCACCGGAAAGAGAGGATCGGAACTAACAGACAGCTCTAACCGAAGG
GAGAGGGTCGACTAAAAGGAGAGCTCTAACTGAAGCTACTAACCGAGCTACTAACAGATTGAACT
AGCAAGAGCCGCTACCCTAACTGCTACGACTAAGGAGCAGATAGAGCTACTACCGAAGGGAAAGT
TGCTTCCTGAAGGCAGTTGTCTCTTCTTTCTTTAGGAAGTTTCCTTGAGAAAGGTGCCAAGAGTG
AGCCCAAAAGGGGATATCGATCAAATTAGTGGTCCACCTCTAGGAACATGTGATTTATTGTAAAA
AGATTCTGGCACATCGTGATCGTGAGACCATATACATAAAGGAAGAGGCCGGTATCAACTCATTT
AGAAGTATAATTATTCCCTTCCGGTATATGTATAGAGATAGACTCTATTGATATGAAAGACCTAG
GGAAGACCCAGCTTCAATGGGGCTAGCAGTACGCCCTCATCAGGC
Found at i:179885 original size:11 final size:11
Alignment explanation
Indices: 179859--179896 Score: 58
Period size: 11 Copynumber: 3.4 Consensus size: 11
179849 TGTTTCCAAG
*
179859 CAAAACAACAAA
1 CAAAATAAC-AA
179871 CAAAATAACAA
1 CAAAATAACAA
179882 CAAAATAACAA
1 CAAAATAACAA
179893 CAAA
1 CAAA
179897 TAAGAATTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
11 17 0.68
12 8 0.32
ACGTcount: A:0.74, C:0.21, G:0.00, T:0.05
Consensus pattern (11 bp):
CAAAATAACAA
Left flanking sequence: Indices 179359 -- 179858
GTCAGAGGGGCTGGGGGGAAAGGGTGGGGGGCCCCCCAGCAACACTAAAAGAGGGAGATGTCCAG
CAATAACACCCGAGAAGTTAAGCGTACATAGGGAGAAAACCAGAATGCACTTCAAAATGGAAGAA
ATGCAAAAGGTTACAGGTGTAAATACCAAAGAATAGTAGAGATATGCGAACAGGAAAACCAATTC
GACCCACTCAGTCTTAAAAAAAAAGACTGCAGGTAGCTGTTCGCGGGGTTGTTGCTTTGTTGAGT
TGCCGACGCCAGCGATTCGAATTGATAAACAACGTACTTGTTGCGTAAGTAAAGAGTCTCATTTG
TGCGAGTTGGATACTACAACATTATTCAATCGACAGAAAAGGAAAGAGAGGAGCGAAGCAACTAT
TAACAACTCTTCCTTAAAGCCTTCAACCCCGTAACAACGTAATCAAGCTTGTTTGTTTCATTTTT
TTTGTTTAAAAAATGAAACTATTATTCCCCTTGGTTGTTTCCAAG
Right flanking sequence: Indices 179897 -- 180396
TAAGAATTATTTATGAATTTATTTATTTTATATAATAATATATATAAATTATATATAAATTATAT
ATTATATATAATATATATACAATCACGCGCTATACGTATACGCGAGAAGCTGTTGCTAAGGGAAG
CAGTAACGCCCTGTCCGGGCTCTTCCTAAGAAACTGTTGCTAAGAAGCTGTTGCTAAGGGAGTGA
TGTGATTCCCAGGTGGGGATCACGAACGATATATAGCACAAGAACTTTTGTTAAGTAATTGATTA
TTGAAGCGAAGCAGTATTCTCCTATTCTCATTTCACTTTCATTTCATATTCTTAATCGTATTATA
AATCACTTGCCTTCCTTAGAGACTGTAAGGAGTGGAAAGCAACGAGACTGTAAGGAGTTCCAAGC
TTTAAGTATTAGAAGCGTATTAGAAGGAAGCGTATTAGAACTATGATATTTGTTGCGTAGCTGTT
CTCATAGAATAGTTCAATTAGTTGCTACGCTGTTCTAAGAAAACT
Found at i:179939 original size:2 final size:2
Alignment explanation
Indices: 179925--179980 Score: 52
Period size: 2 Copynumber: 31.0 Consensus size: 2
179915 TTATTTATTT
* *
179925 TA TA TA -A TA -A TA TA TA TA AA T- TA TA TA TA AA T- TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
179963 T- TA TA TA TA -A TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA
179981 CAATCACGCG
Statistics
Matches: 44, Mismatches: 4, Indels: 12
0.73 0.07 0.20
Matches are distributed among these distances:
1 6 0.14
2 38 0.86
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (2 bp):
TA
Left flanking sequence: Indices 179425 -- 179924
AATAACACCCGAGAAGTTAAGCGTACATAGGGAGAAAACCAGAATGCACTTCAAAATGGAAGAAA
TGCAAAAGGTTACAGGTGTAAATACCAAAGAATAGTAGAGATATGCGAACAGGAAAACCAATTCG
ACCCACTCAGTCTTAAAAAAAAAGACTGCAGGTAGCTGTTCGCGGGGTTGTTGCTTTGTTGAGTT
GCCGACGCCAGCGATTCGAATTGATAAACAACGTACTTGTTGCGTAAGTAAAGAGTCTCATTTGT
GCGAGTTGGATACTACAACATTATTCAATCGACAGAAAAGGAAAGAGAGGAGCGAAGCAACTATT
AACAACTCTTCCTTAAAGCCTTCAACCCCGTAACAACGTAATCAAGCTTGTTTGTTTCATTTTTT
TTGTTTAAAAAATGAAACTATTATTCCCCTTGGTTGTTTCCAAGCAAAACAACAAACAAAATAAC
AACAAAATAACAACAAATAAGAATTATTTATGAATTTATTTATTT
Right flanking sequence: Indices 179981 -- 180480
CAATCACGCGCTATACGTATACGCGAGAAGCTGTTGCTAAGGGAAGCAGTAACGCCCTGTCCGGG
CTCTTCCTAAGAAACTGTTGCTAAGAAGCTGTTGCTAAGGGAGTGATGTGATTCCCAGGTGGGGA
TCACGAACGATATATAGCACAAGAACTTTTGTTAAGTAATTGATTATTGAAGCGAAGCAGTATTC
TCCTATTCTCATTTCACTTTCATTTCATATTCTTAATCGTATTATAAATCACTTGCCTTCCTTAG
AGACTGTAAGGAGTGGAAAGCAACGAGACTGTAAGGAGTTCCAAGCTTTAAGTATTAGAAGCGTA
TTAGAAGGAAGCGTATTAGAACTATGATATTTGTTGCGTAGCTGTTCTCATAGAATAGTTCAATT
AGTTGCTACGCTGTTCTAAGAAAACTCTTACTATAATAAAGGAGAGGAGCGAAGCTGCTTGACTG
CTAAGGAAAGAAGCTGAAAGCTAAACCCTTTCTCCTATTCTAAGG
Found at i:179951 original size:11 final size:11
Alignment explanation
Indices: 179925--179963 Score: 60
Period size: 11 Copynumber: 3.5 Consensus size: 11
179915 TTATTTATTT
*
179925 TATATAATAATA
1 TATATAA-ATTA
179937 TATATAAATTA
1 TATATAAATTA
179948 TATATAAATTA
1 TATATAAATTA
179959 TATAT
1 TATAT
179964 TATATATAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
11 19 0.73
12 7 0.27
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (11 bp):
TATATAAATTA
Left flanking sequence: Indices 179425 -- 179924
AATAACACCCGAGAAGTTAAGCGTACATAGGGAGAAAACCAGAATGCACTTCAAAATGGAAGAAA
TGCAAAAGGTTACAGGTGTAAATACCAAAGAATAGTAGAGATATGCGAACAGGAAAACCAATTCG
ACCCACTCAGTCTTAAAAAAAAAGACTGCAGGTAGCTGTTCGCGGGGTTGTTGCTTTGTTGAGTT
GCCGACGCCAGCGATTCGAATTGATAAACAACGTACTTGTTGCGTAAGTAAAGAGTCTCATTTGT
GCGAGTTGGATACTACAACATTATTCAATCGACAGAAAAGGAAAGAGAGGAGCGAAGCAACTATT
AACAACTCTTCCTTAAAGCCTTCAACCCCGTAACAACGTAATCAAGCTTGTTTGTTTCATTTTTT
TTGTTTAAAAAATGAAACTATTATTCCCCTTGGTTGTTTCCAAGCAAAACAACAAACAAAATAAC
AACAAAATAACAACAAATAAGAATTATTTATGAATTTATTTATTT
Right flanking sequence: Indices 179964 -- 180463
TATATATAATATATATACAATCACGCGCTATACGTATACGCGAGAAGCTGTTGCTAAGGGAAGCA
GTAACGCCCTGTCCGGGCTCTTCCTAAGAAACTGTTGCTAAGAAGCTGTTGCTAAGGGAGTGATG
TGATTCCCAGGTGGGGATCACGAACGATATATAGCACAAGAACTTTTGTTAAGTAATTGATTATT
GAAGCGAAGCAGTATTCTCCTATTCTCATTTCACTTTCATTTCATATTCTTAATCGTATTATAAA
TCACTTGCCTTCCTTAGAGACTGTAAGGAGTGGAAAGCAACGAGACTGTAAGGAGTTCCAAGCTT
TAAGTATTAGAAGCGTATTAGAAGGAAGCGTATTAGAACTATGATATTTGTTGCGTAGCTGTTCT
CATAGAATAGTTCAATTAGTTGCTACGCTGTTCTAAGAAAACTCTTACTATAATAAAGGAGAGGA
GCGAAGCTGCTTGACTGCTAAGGAAAGAAGCTGAAAGCTAAACCC
Found at i:179965 original size:18 final size:20
Alignment explanation
Indices: 179924--179980 Score: 82
Period size: 18 Copynumber: 2.9 Consensus size: 20
179914 TTTATTTATT
179924 TTATATAATAATATATATAAA
1 TTATAT-ATAATATATATAAA
*
179945 TTATATATAA-AT-TATATA
1 TTATATATAATATATATAAA
179963 TTATATATAATATATATA
1 TTATATATAATATATATA
179981 CAATCACGCG
Statistics
Matches: 33, Mismatches: 1, Indels: 5
0.85 0.03 0.13
Matches are distributed among these distances:
18 15 0.45
19 4 0.12
20 8 0.24
21 6 0.18
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (20 bp):
TTATATATAATATATATAAA
Left flanking sequence: Indices 179424 -- 179923
CAATAACACCCGAGAAGTTAAGCGTACATAGGGAGAAAACCAGAATGCACTTCAAAATGGAAGAA
ATGCAAAAGGTTACAGGTGTAAATACCAAAGAATAGTAGAGATATGCGAACAGGAAAACCAATTC
GACCCACTCAGTCTTAAAAAAAAAGACTGCAGGTAGCTGTTCGCGGGGTTGTTGCTTTGTTGAGT
TGCCGACGCCAGCGATTCGAATTGATAAACAACGTACTTGTTGCGTAAGTAAAGAGTCTCATTTG
TGCGAGTTGGATACTACAACATTATTCAATCGACAGAAAAGGAAAGAGAGGAGCGAAGCAACTAT
TAACAACTCTTCCTTAAAGCCTTCAACCCCGTAACAACGTAATCAAGCTTGTTTGTTTCATTTTT
TTTGTTTAAAAAATGAAACTATTATTCCCCTTGGTTGTTTCCAAGCAAAACAACAAACAAAATAA
CAACAAAATAACAACAAATAAGAATTATTTATGAATTTATTTATT
Right flanking sequence: Indices 179981 -- 180480
CAATCACGCGCTATACGTATACGCGAGAAGCTGTTGCTAAGGGAAGCAGTAACGCCCTGTCCGGG
CTCTTCCTAAGAAACTGTTGCTAAGAAGCTGTTGCTAAGGGAGTGATGTGATTCCCAGGTGGGGA
TCACGAACGATATATAGCACAAGAACTTTTGTTAAGTAATTGATTATTGAAGCGAAGCAGTATTC
TCCTATTCTCATTTCACTTTCATTTCATATTCTTAATCGTATTATAAATCACTTGCCTTCCTTAG
AGACTGTAAGGAGTGGAAAGCAACGAGACTGTAAGGAGTTCCAAGCTTTAAGTATTAGAAGCGTA
TTAGAAGGAAGCGTATTAGAACTATGATATTTGTTGCGTAGCTGTTCTCATAGAATAGTTCAATT
AGTTGCTACGCTGTTCTAAGAAAACTCTTACTATAATAAAGGAGAGGAGCGAAGCTGCTTGACTG
CTAAGGAAAGAAGCTGAAAGCTAAACCCTTTCTCCTATTCTAAGG
Found at i:179971 original size:11 final size:11
Alignment explanation
Indices: 179924--179979 Score: 53
Period size: 11 Copynumber: 5.1 Consensus size: 11
179914 TTTATTTATT
179924 TTATATA-ATA
1 TTATATATATA
* *
179934 ATATATATAAA
1 TTATATATATA
*
179945 TTATATATAAA
1 TTATATATATA
179956 TTATATAT-TA
1 TTATATATATA
179966 TATATAATATATA
1 T-TAT-ATATATA
179979 T
1 T
179980 ACAATCACGC
Statistics
Matches: 38, Mismatches: 4, Indels: 5
0.81 0.09 0.11
Matches are distributed among these distances:
10 8 0.21
11 23 0.61
12 4 0.11
13 3 0.08
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (11 bp):
TTATATATATA
Left flanking sequence: Indices 179424 -- 179923
CAATAACACCCGAGAAGTTAAGCGTACATAGGGAGAAAACCAGAATGCACTTCAAAATGGAAGAA
ATGCAAAAGGTTACAGGTGTAAATACCAAAGAATAGTAGAGATATGCGAACAGGAAAACCAATTC
GACCCACTCAGTCTTAAAAAAAAAGACTGCAGGTAGCTGTTCGCGGGGTTGTTGCTTTGTTGAGT
TGCCGACGCCAGCGATTCGAATTGATAAACAACGTACTTGTTGCGTAAGTAAAGAGTCTCATTTG
TGCGAGTTGGATACTACAACATTATTCAATCGACAGAAAAGGAAAGAGAGGAGCGAAGCAACTAT
TAACAACTCTTCCTTAAAGCCTTCAACCCCGTAACAACGTAATCAAGCTTGTTTGTTTCATTTTT
TTTGTTTAAAAAATGAAACTATTATTCCCCTTGGTTGTTTCCAAGCAAAACAACAAACAAAATAA
CAACAAAATAACAACAAATAAGAATTATTTATGAATTTATTTATT
Right flanking sequence: Indices 179980 -- 180479
ACAATCACGCGCTATACGTATACGCGAGAAGCTGTTGCTAAGGGAAGCAGTAACGCCCTGTCCGG
GCTCTTCCTAAGAAACTGTTGCTAAGAAGCTGTTGCTAAGGGAGTGATGTGATTCCCAGGTGGGG
ATCACGAACGATATATAGCACAAGAACTTTTGTTAAGTAATTGATTATTGAAGCGAAGCAGTATT
CTCCTATTCTCATTTCACTTTCATTTCATATTCTTAATCGTATTATAAATCACTTGCCTTCCTTA
GAGACTGTAAGGAGTGGAAAGCAACGAGACTGTAAGGAGTTCCAAGCTTTAAGTATTAGAAGCGT
ATTAGAAGGAAGCGTATTAGAACTATGATATTTGTTGCGTAGCTGTTCTCATAGAATAGTTCAAT
TAGTTGCTACGCTGTTCTAAGAAAACTCTTACTATAATAAAGGAGAGGAGCGAAGCTGCTTGACT
GCTAAGGAAAGAAGCTGAAAGCTAAACCCTTTCTCCTATTCTAAG
Found at i:179980 original size:11 final size:11
Alignment explanation
Indices: 179925--179980 Score: 63
Period size: 9 Copynumber: 5.7 Consensus size: 11
179915 TTATTTATTT
179925 TATATA-ATAA
1 TATATATATAA
179935 TATATATA-AA
1 TATATATATAA
179945 T-TATATATAA
1 TATATATATAA
179955 -AT-TATAT-A
1 TATATATATAA
179963 T-TATATATAA
1 TATATATATAA
179973 TATATATA
1 TATATATA
179981 CAATCACGCG
Statistics
Matches: 39, Mismatches: 0, Indels: 13
0.75 0.00 0.25
Matches are distributed among these distances:
8 2 0.05
9 16 0.41
10 14 0.36
11 7 0.18
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (11 bp):
TATATATATAA
Left flanking sequence: Indices 179425 -- 179924
AATAACACCCGAGAAGTTAAGCGTACATAGGGAGAAAACCAGAATGCACTTCAAAATGGAAGAAA
TGCAAAAGGTTACAGGTGTAAATACCAAAGAATAGTAGAGATATGCGAACAGGAAAACCAATTCG
ACCCACTCAGTCTTAAAAAAAAAGACTGCAGGTAGCTGTTCGCGGGGTTGTTGCTTTGTTGAGTT
GCCGACGCCAGCGATTCGAATTGATAAACAACGTACTTGTTGCGTAAGTAAAGAGTCTCATTTGT
GCGAGTTGGATACTACAACATTATTCAATCGACAGAAAAGGAAAGAGAGGAGCGAAGCAACTATT
AACAACTCTTCCTTAAAGCCTTCAACCCCGTAACAACGTAATCAAGCTTGTTTGTTTCATTTTTT
TTGTTTAAAAAATGAAACTATTATTCCCCTTGGTTGTTTCCAAGCAAAACAACAAACAAAATAAC
AACAAAATAACAACAAATAAGAATTATTTATGAATTTATTTATTT
Right flanking sequence: Indices 179981 -- 180480
CAATCACGCGCTATACGTATACGCGAGAAGCTGTTGCTAAGGGAAGCAGTAACGCCCTGTCCGGG
CTCTTCCTAAGAAACTGTTGCTAAGAAGCTGTTGCTAAGGGAGTGATGTGATTCCCAGGTGGGGA
TCACGAACGATATATAGCACAAGAACTTTTGTTAAGTAATTGATTATTGAAGCGAAGCAGTATTC
TCCTATTCTCATTTCACTTTCATTTCATATTCTTAATCGTATTATAAATCACTTGCCTTCCTTAG
AGACTGTAAGGAGTGGAAAGCAACGAGACTGTAAGGAGTTCCAAGCTTTAAGTATTAGAAGCGTA
TTAGAAGGAAGCGTATTAGAACTATGATATTTGTTGCGTAGCTGTTCTCATAGAATAGTTCAATT
AGTTGCTACGCTGTTCTAAGAAAACTCTTACTATAATAAAGGAGAGGAGCGAAGCTGCTTGACTG
CTAAGGAAAGAAGCTGAAAGCTAAACCCTTTCTCCTATTCTAAGG
Found at i:180071 original size:14 final size:14
Alignment explanation
Indices: 180052--180084 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
180042 CGGGCTCTTC
180052 CTAAGAAACTGTTG
1 CTAAGAAACTGTTG
*
180066 CTAAGAAGCTGTTG
1 CTAAGAAACTGTTG
180080 CTAAG
1 CTAAG
180085 GGAGTGATGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.33, C:0.15, G:0.24, T:0.27
Consensus pattern (14 bp):
CTAAGAAACTGTTG
Left flanking sequence: Indices 179552 -- 180051
TCGACCCACTCAGTCTTAAAAAAAAAGACTGCAGGTAGCTGTTCGCGGGGTTGTTGCTTTGTTGA
GTTGCCGACGCCAGCGATTCGAATTGATAAACAACGTACTTGTTGCGTAAGTAAAGAGTCTCATT
TGTGCGAGTTGGATACTACAACATTATTCAATCGACAGAAAAGGAAAGAGAGGAGCGAAGCAACT
ATTAACAACTCTTCCTTAAAGCCTTCAACCCCGTAACAACGTAATCAAGCTTGTTTGTTTCATTT
TTTTTGTTTAAAAAATGAAACTATTATTCCCCTTGGTTGTTTCCAAGCAAAACAACAAACAAAAT
AACAACAAAATAACAACAAATAAGAATTATTTATGAATTTATTTATTTTATATAATAATATATAT
AAATTATATATAAATTATATATTATATATAATATATATACAATCACGCGCTATACGTATACGCGA
GAAGCTGTTGCTAAGGGAAGCAGTAACGCCCTGTCCGGGCTCTTC
Right flanking sequence: Indices 180085 -- 180584
GGAGTGATGTGATTCCCAGGTGGGGATCACGAACGATATATAGCACAAGAACTTTTGTTAAGTAA
TTGATTATTGAAGCGAAGCAGTATTCTCCTATTCTCATTTCACTTTCATTTCATATTCTTAATCG
TATTATAAATCACTTGCCTTCCTTAGAGACTGTAAGGAGTGGAAAGCAACGAGACTGTAAGGAGT
TCCAAGCTTTAAGTATTAGAAGCGTATTAGAAGGAAGCGTATTAGAACTATGATATTTGTTGCGT
AGCTGTTCTCATAGAATAGTTCAATTAGTTGCTACGCTGTTCTAAGAAAACTCTTACTATAATAA
AGGAGAGGAGCGAAGCTGCTTGACTGCTAAGGAAAGAAGCTGAAAGCTAAACCCTTTCTCCTATT
CTAAGGCTAATTGCTACGCTGTTCTAAGTTTCTAGTCTCGTTTCTTTTCGCCCCTCGGAACAAAG
AAAAAGGGAGTGAAAGCCCGTATTCCAGTTGGTTAAGATAAAGAT
Found at i:180318 original size:15 final size:15
Alignment explanation
Indices: 180298--180326 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
180288 TTAAGTATTA
180298 GAAGCGTATTAGAAG
1 GAAGCGTATTAGAAG
180313 GAAGCGTATTAGAA
1 GAAGCGTATTAGAA
180327 CTATGATATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.41, C:0.07, G:0.31, T:0.21
Consensus pattern (15 bp):
GAAGCGTATTAGAAG
Left flanking sequence: Indices 179798 -- 180297
TGTTTGTTTCATTTTTTTTGTTTAAAAAATGAAACTATTATTCCCCTTGGTTGTTTCCAAGCAAA
ACAACAAACAAAATAACAACAAAATAACAACAAATAAGAATTATTTATGAATTTATTTATTTTAT
ATAATAATATATATAAATTATATATAAATTATATATTATATATAATATATATACAATCACGCGCT
ATACGTATACGCGAGAAGCTGTTGCTAAGGGAAGCAGTAACGCCCTGTCCGGGCTCTTCCTAAGA
AACTGTTGCTAAGAAGCTGTTGCTAAGGGAGTGATGTGATTCCCAGGTGGGGATCACGAACGATA
TATAGCACAAGAACTTTTGTTAAGTAATTGATTATTGAAGCGAAGCAGTATTCTCCTATTCTCAT
TTCACTTTCATTTCATATTCTTAATCGTATTATAAATCACTTGCCTTCCTTAGAGACTGTAAGGA
GTGGAAAGCAACGAGACTGTAAGGAGTTCCAAGCTTTAAGTATTA
Right flanking sequence: Indices 180327 -- 180826
CTATGATATTTGTTGCGTAGCTGTTCTCATAGAATAGTTCAATTAGTTGCTACGCTGTTCTAAGA
AAACTCTTACTATAATAAAGGAGAGGAGCGAAGCTGCTTGACTGCTAAGGAAAGAAGCTGAAAGC
TAAACCCTTTCTCCTATTCTAAGGCTAATTGCTACGCTGTTCTAAGTTTCTAGTCTCGTTTCTTT
TCGCCCCTCGGAACAAAGAAAAAGGGAGTGAAAGCCCGTATTCCAGTTGGTTAAGATAAAGATTA
ATGGATAGAAAGATTCATGGGTCGAAGCGAAAGGAGCTAAAAGAAGAACAGGAGAGGAGATGAAA
GAAGTGGAAAGCAGAACAGCTACGCTTCTAATACGCTTCGTCTAGTTCTATTCCACAAGGTTGTT
TACTTGCTTACTTGTTAGAGTACGGAAGCGACATCATCTAATAGTTCAATTAGTTGCGTAGCAGT
TCTAAGTTTCTTTTCTTTTCTTGCTGGAAAGGAGCTGAACTTACC
Found at i:190242 original size:22 final size:22
Alignment explanation
Indices: 190216--190327 Score: 116
Period size: 22 Copynumber: 4.9 Consensus size: 22
190206 TGCGTAGCTT
190216 ATAATAGAATAGTTCAATTCGA
1 ATAATAGAATAGTTCAATTCGA
190238 ATAATAGAATAGTTCAATTCGAA
1 ATAATAGAATAGTTCAATTCG-A
** *
190261 TAGGCTAATATCATAGTTCAATTAGA
1 -A---TAATAGAATAGTTCAATTCGA
** * *
190287 ATAATATCATAGTTCCATTTGA
1 ATAATAGAATAGTTCAATTCGA
190309 ATAATAGAATAGTTCAATT
1 ATAATAGAATAGTTCAATT
190328 AGTTGCGTAG
Statistics
Matches: 77, Mismatches: 8, Indels: 10
0.81 0.08 0.11
Matches are distributed among these distances:
22 56 0.73
23 1 0.01
24 1 0.01
25 1 0.01
26 1 0.01
27 17 0.22
ACGTcount: A:0.43, C:0.10, G:0.12, T:0.35
Consensus pattern (22 bp):
ATAATAGAATAGTTCAATTCGA
Left flanking sequence: Indices 189716 -- 190215
GTAAACCTCTAAGTAATCTACTGCCCTAACTAAACCACCAAGAGCGGATAAGGCTAAAGGGTGTC
AGCACCCACTCCTGGGCAAAAGCATGCTAAGGGCGCTGCTTACTCCTTCAATAGCAGATTCAATA
GCAAAGAAAAGAAGATTCCGTATCATGGGGATGGTCCAACCGGGTGAACTAATTCTTATCCTTCC
CCTCTCACTTCGTTCGAGCTTCATTACATCCACCCTCTCACTTCGTTCGAGCTTCCTTTTCCCTC
TCACCGCCCATGTTTGCAGAGACGAAAGGGAATCGGTCAGGCCTAGCGCTTAAGGCTTCTAGCTC
CCCCAACAATCAGTGGAAGGAGAGGAGCTTTAAAAGGAAAGGCGTTCCAAGCAACTCGCCTTAGA
ACAGCGTAGCAACTATACTTGTTGGAAGGAGAGGAGTGAAAGCCACTTTCCTGCTAAGAAAGGAG
CTGAAAGCAACTTATAGTAATAGTTTTCTTAGAACTGCGTAGCTT
Right flanking sequence: Indices 190328 -- 190827
AGTTGCGTAGCAGTTCTAATTAAAGAACTATTAGTAGCAGTTCTTCTTATTCCCCTCTTCCTTAT
ATAAGCGAGTAAACTACCTTGCAGTCGAGTCCCTTCTATGGGAATTCCTCTTCCTTGCAGTCGAG
TCCCGTCAGAGTATGAATAAATAGGACAGCTAAGGGTCGGAATAAGCTTGAAAGAGAATGTCCTA
TAAGAATGTAGGTAAATTAACACCCCAGCTCGCCCTTTCTTTCCCCCCCAAAAAATGAGATTCTT
GCCCGGCGTACTGTTGATAGTGCTATGTCCCAACCTCGTTATATTGGACTTGGTGAAGATGCCAA
ACATAAAGATACTGTTAGAACTATGGTAGAAGCGGCCGCCGCTTTTCATTATCAAAAGTTTTTCA
CTTACGATGATGGGTTAACATGAGGTTGCTGTTCCGGGGTAACATGGGTTGGCGCAGGTTTTTCT
TAATAATTCTTATTATACAGGGGATATATCCGAACCACTAAGAAA
Found at i:198973 original size:32 final size:32
Alignment explanation
Indices: 198937--199002 Score: 132
Period size: 32 Copynumber: 2.1 Consensus size: 32
198927 CTTTACTATA
198937 GCGTAGCTTCGTCTAGTTCTTTAATTAGAACT
1 GCGTAGCTTCGTCTAGTTCTTTAATTAGAACT
198969 GCGTAGCTTCGTCTAGTTCTTTAATTAGAACT
1 GCGTAGCTTCGTCTAGTTCTTTAATTAGAACT
199001 GC
1 GC
199003 TACGCAACGT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.21, C:0.20, G:0.20, T:0.39
Consensus pattern (32 bp):
GCGTAGCTTCGTCTAGTTCTTTAATTAGAACT
Left flanking sequence: Indices 198437 -- 198936
CTTAAGGCTGACTGAAGCTTCCCTCTTTCCTGGTCTCCATTACTATTAGTATTAGGAAGAAAAAC
GTCGTCTAGGCGTTCGGAGCGGAAAGAAGAACAGCTACGCCACTTAAGTAATATCGTAAAGAAGA
ACTGCTACGCAACTCTCCTTAGAACTATATAGAAGAAAGAAGAACTGCTACGCAACTAATAGAAT
AGTTCTATTAGAATAGGCATATTTGATGATGTCGCTTCCTTTTCTTTTCATTAATGAGGAACGAA
GGTAGCGACATCTAGCCTATTCTCATTTCACTATTCTATTATTCGAATTGAACTATTCCACAATG
CATTTTTGTGTTATCATTTTCTAACTCTCAATTGATAATTGATTAAGAGAAGAAAAGAGGAGAAC
AGCGTAGCAACTCTCCTTAGAACAGCTACGCTTCTAATCCATACTTTTCCTCTCCTTACAGTGTT
TTTTGTCGAGATTTGGTTGGTGTTCAATAACGCTACTTTACTATA
Right flanking sequence: Indices 199003 -- 199502
TACGCAACGTCTGGCTTCGTCCTCATGAAGAACGTGAGATAACAGAGTAGCTTCCGCCCAGTAGC
GCCCTTTCCCTGACTTTCAAGGCTGGGCCGGTCCCCGGAAGTGAAGCCAACTCACCGACTAATTG
AGAACAAGGAAGGCAAGTTCTTTAGTAGCCAAGGAAGGCAAGTTCTTTATAATACGATAAAGAAT
AAGAAATGTATTAACTTTAAGGAAGGAAAGGCGTGGAAAGCAGAACAGCGTAGCAACTCGACTGT
AAGTCTTTCTCCTTGTGGAATAGTTCAATTCGAATAGGAGAAAGGGGAAATGAGAACTGCGTAGC
AACTCGACTGAGCGTAGCAACTCGACTTACAGTCTTTTTGCTTTTAGCTCCTCTCGCATTCGCTC
GAGCTGCTTTTAGCTCCTTTCCCTCTTCATACCTGATTCGAACTGCGTAGCAACAAATATCTACG
TTCAATGAGATGATGTCGCTTCAGCAACTCGACTTACAGTCTTTT
Found at i:199014 original size:32 final size:32
Alignment explanation
Indices: 198937--199014 Score: 104
Period size: 32 Copynumber: 2.4 Consensus size: 32
198927 CTTTACTATA
**
198937 GCGTAGCTTCGTCTAGTTCTTTAATTAGAACT
1 GCGTAGCAACGTCTAGTTCTTTAATTAGAACT
**
198969 GCGTAGCTTCGTCTAGTTCTTTAATTAGAACT
1 GCGTAGCAACGTCTAGTTCTTTAATTAGAACT
199001 GC-TACGCAACGTCT
1 GCGTA-GCAACGTCT
199015 GGCTTCGTCC
Statistics
Matches: 43, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
31 2 0.05
32 41 0.95
ACGTcount: A:0.22, C:0.22, G:0.19, T:0.37
Consensus pattern (32 bp):
GCGTAGCAACGTCTAGTTCTTTAATTAGAACT
Left flanking sequence: Indices 198437 -- 198936
CTTAAGGCTGACTGAAGCTTCCCTCTTTCCTGGTCTCCATTACTATTAGTATTAGGAAGAAAAAC
GTCGTCTAGGCGTTCGGAGCGGAAAGAAGAACAGCTACGCCACTTAAGTAATATCGTAAAGAAGA
ACTGCTACGCAACTCTCCTTAGAACTATATAGAAGAAAGAAGAACTGCTACGCAACTAATAGAAT
AGTTCTATTAGAATAGGCATATTTGATGATGTCGCTTCCTTTTCTTTTCATTAATGAGGAACGAA
GGTAGCGACATCTAGCCTATTCTCATTTCACTATTCTATTATTCGAATTGAACTATTCCACAATG
CATTTTTGTGTTATCATTTTCTAACTCTCAATTGATAATTGATTAAGAGAAGAAAAGAGGAGAAC
AGCGTAGCAACTCTCCTTAGAACAGCTACGCTTCTAATCCATACTTTTCCTCTCCTTACAGTGTT
TTTTGTCGAGATTTGGTTGGTGTTCAATAACGCTACTTTACTATA
Right flanking sequence: Indices 199015 -- 199514
GGCTTCGTCCTCATGAAGAACGTGAGATAACAGAGTAGCTTCCGCCCAGTAGCGCCCTTTCCCTG
ACTTTCAAGGCTGGGCCGGTCCCCGGAAGTGAAGCCAACTCACCGACTAATTGAGAACAAGGAAG
GCAAGTTCTTTAGTAGCCAAGGAAGGCAAGTTCTTTATAATACGATAAAGAATAAGAAATGTATT
AACTTTAAGGAAGGAAAGGCGTGGAAAGCAGAACAGCGTAGCAACTCGACTGTAAGTCTTTCTCC
TTGTGGAATAGTTCAATTCGAATAGGAGAAAGGGGAAATGAGAACTGCGTAGCAACTCGACTGAG
CGTAGCAACTCGACTTACAGTCTTTTTGCTTTTAGCTCCTCTCGCATTCGCTCGAGCTGCTTTTA
GCTCCTTTCCCTCTTCATACCTGATTCGAACTGCGTAGCAACAAATATCTACGTTCAATGAGATG
ATGTCGCTTCAGCAACTCGACTTACAGTCTTTTTGCTTTTCGCTC
Found at i:200225 original size:15 final size:15
Alignment explanation
Indices: 200205--200233 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
200195 AATATCATAG
200205 TTCTAATACGCTTCC
1 TTCTAATACGCTTCC
200220 TTCTAATACGCTTC
1 TTCTAATACGCTTC
200234 TAATACTTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.21, C:0.31, G:0.07, T:0.41
Consensus pattern (15 bp):
TTCTAATACGCTTCC
Left flanking sequence: Indices 199705 -- 200204
CCCTTTTCGTTCAATGAGAATAGGAGAAAGGGGAAATGAGAACTGCTACGCTCCAACCCTTCCAA
CAAGTGTAGTTGCGTAGCTCCAACCCTTGTTCTTCTTTCCGCGCCTCTCTTTCCCTCTTCATACC
TGATTCGAACTGCGTAGCAACAAATTGAACTATTCTATGAGAACAGCGTAGCGGAAACCCTTACA
GTCAAGTTGCTTCTACGCCTCTCTTTCCTTACTATAAACTTAGCAACACAGGAAGGCAAGTTCTT
TATAATACGATTAATAATAATCAATGAGAACTGCTACGCTTATCATACTTAAAGCTTTCCACTCC
TCTCGCATTCGCTCGAGTTTCTTTCCACTCCTTACAGTCTCGTTCAAGCTGCTTCGCTTCTATTA
TTATAGGAAGGAGAGGGGAATAAGAAGAACTGCTACTAATAGTTTTCTTAGAACAGCGTAGCAAC
TAATTGAACTATTCTATGAGAACAGCTACGCAACAAATATCATAG
Right flanking sequence: Indices 200234 -- 200733
TAATACTTAAAGCTTGGAACTCCTTACAGTCTCGTTGCTTTCCACTCCTTACAGTCTCTAAGGAA
GGCAAGTGATTTATAATACGATTAAGAATATGAAATGAAAGTGAAATGAGAACTGCTACGCAACG
AGACAGAGAGAATAGGAGAAAGGGGAACTGCTACGCTTAGAATTGAATAGTTCAAACTGCGTAGC
TCCTCTCACTTCATTTTAAAGCTTCTTTCCACTCCTGTAAGTCAAGTACAGGAAAGTAGCTTTCA
CTCCTCTCACATTCGAATAGTGAAATGAGAATAGGAGAATAGTTCAATGAGAACAGCGTAGCAAC
TCTCTTTCCTTAGCAGTCTCGTTGCTTGGAACTCCTGTAAGTCTTTCTCCTTGTGGAACTATTCA
ATTCGAACAAGGCTTGGAACTCCTCGAACATTCGTCTAGTGAAATGAGAATAGGAGAAAGGGGAA
CTGCTACGCTGTTCTTCTTTCCACTCCTTACAGTCTCGTTGCTTG
Found at i:200980 original size:26 final size:25
Alignment explanation
Indices: 200951--201006 Score: 76
Period size: 26 Copynumber: 2.2 Consensus size: 25
200941 CTAAGTTTAT
* *
200951 AGTCTCGTTGCTTTCCACTCCTTAGC
1 AGTCTCGTTGCTTGCAACTCCTTA-C
*
200977 AGTCTCGTTGCTTGGAACTCCTTAC
1 AGTCTCGTTGCTTGCAACTCCTTAC
201002 AGTCT
1 AGTCT
201007 TTAGTAGCCA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
25 6 0.22
26 21 0.78
ACGTcount: A:0.14, C:0.30, G:0.18, T:0.38
Consensus pattern (25 bp):
AGTCTCGTTGCTTGCAACTCCTTAC
Left flanking sequence: Indices 200451 -- 200950
TTCTTTCCACTCCTGTAAGTCAAGTACAGGAAAGTAGCTTTCACTCCTCTCACATTCGAATAGTG
AAATGAGAATAGGAGAATAGTTCAATGAGAACAGCGTAGCAACTCTCTTTCCTTAGCAGTCTCGT
TGCTTGGAACTCCTGTAAGTCTTTCTCCTTGTGGAACTATTCAATTCGAACAAGGCTTGGAACTC
CTCGAACATTCGTCTAGTGAAATGAGAATAGGAGAAAGGGGAACTGCTACGCTGTTCTTCTTTCC
ACTCCTTACAGTCTCGTTGCTTGGAACTCCTGTAAGTCAAGTGTCTTTTCGCTCCTGTTCTTCAT
TTTCCCTTAGCAACACAGGAAGGCAAGTGATTTATAATACGATTAAGAATATTCAATTCCAGTTC
ATAGGCCTTAACAAAACTGAAATGAGAATAGGAGAATAGTGAAACTAATAGAATCGTTCAATTCG
AATAGGAGAATAGTTCCATTCGAACAGCTACGCTTCTAAGTTTAT
Right flanking sequence: Indices 201007 -- 201506
TTAGTAGCCAAGGAAGGCAAGTTCTTTATAATACGATAAAGAAAGAGTAGGAGAAAGCAAGAAAG
AACTATCTGACTTCGCGGATAAGAAATCAAGGACTTGTCGGTAGATCAGCTAGCTCGCGCTCTAG
TCTTTCATTGATCTTTTCTGCCCGGACCATCGCTTTAGCGCCTTTAGCAACTACTATAGCCCAGC
CCGGACCATCGCTTATACCGGAAGCGACATCATCAAATATGCCTATTCGAATTTCACTATTCTAT
TATTCTAATGGAACTATTCTATTAGTTGCGTAGCAGTTCTAATTAAAGAACTATTAGTACCCTTT
ACTTAAGAGATTACTTTCTTAGTAGTTGCGTCTCGTCTCATTTCCTTACTTCTTGCCTATGAGAA
TTGAACTATGATATTAGAAGCGTAGCTGTTCTTCTTTCGCCCCCTCTCACATTCGTTCGAGTGGC
TCCGCTCCTCTCTCTAAATAGAAAGACTCAACGAGGAGTATGAGA
Found at i:202348 original size:22 final size:22
Alignment explanation
Indices: 202323--202412 Score: 128
Period size: 22 Copynumber: 4.1 Consensus size: 22
202313 CTTTTATGCC
202323 TATGAGAATTGAACTATGATAT
1 TATGAGAATTGAACTATGATAT
202345 TATGAGAATTGAACTATGATAT
1 TATGAGAATTGAACTATGATAT
**
202367 TATGAGAATTGAACTATTCTAT
1 TATGAGAATTGAACTATGATAT
* *
202389 TATTCA-AATGGAACTATGATAT
1 TA-TGAGAATTGAACTATGATAT
202411 TA
1 TA
202413 GTTGCGTAGC
Statistics
Matches: 61, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
22 59 0.97
23 2 0.03
ACGTcount: A:0.40, C:0.07, G:0.16, T:0.38
Consensus pattern (22 bp):
TATGAGAATTGAACTATGATAT
Left flanking sequence: Indices 201823 -- 202322
TTAATTAGAACTGCGTAGCAGTTCTAAGTTTATAGTCAAGTTGCTTTTCGCGCTTTTCCTTTTAA
AGCTTCTTCCACGCCTCTCACATTCGTTCGAGCTACCTTCGTTCCGTCATTAATGAAAAGAAAAG
GGAGTTTACTTGCTTTTATGAAATGAAAAGGGATGCGCTAAGGCAAGCTACGCTGTTCTTCTTCC
GCTTAGAGTAAGGAAATAAACTCCCTTCCTCTAACAAGTAAGTCTTTCTCCTTGCGGAATAGTTC
AATTCGAATAGGCTTTCCACTCCTTTCCTTGCAGTCAAGCAGCTTCGCGCCTTTCGCCCCCTCTC
TCTAAGCTAAACGCCCCTCTCCTGTAAGTCTTTTTGCTTTCAGCTTCTTTCCCTGCGGTCAAGTG
ACTTCGTTCCTCTCCAAACTTTATAGTCAAGCAAGCGGCTTGGAACTTCCTTCTTTATAGTAAAG
GAGAGGAGTGGAAAGCCTATTCTAAGCGACATCATCTTTTATGCC
Right flanking sequence: Indices 202413 -- 202912
GTTGCGTAGCAGTTCTAAGAAAACTCTTACTATAAGGAAAACGGAGCGGAAGTTGGAAAGGCGTT
CCATTTAAAGCGATCTTCTTCTAAGCGGAAACGAGACTAGAAACTCGAATTCCAGTTTGAACTAT
AAGGAATTGATGTAGCAGTTAAAGAATGAAACTTGGCTTCAAGCCGGGCTAGGAACTTCGAACCT
ACTCCTTTTCCCTGAACTCGTAGCTTCGCTTCGTCATCAAATATGCCTATTCTAATTGGTAAGCC
AAGTCCGATCGATCTTAAAGCTACGAGGTTCCCGTTCTCAATTCTTCTTTCACTCCTCTCTTCCC
TTATAGTCTATCGAGTTGCTTTTAGCTCCTTTCCCTGCTACATAAAGTCAAACAGCTTCGCGCCT
CTCCTGTAAGTCGAGTCGCTTTTCAGCTCCTTTCCCTACGGTCAAGTGGCTTTCGCTCCTTCCAA
CAAGTATAGAAGCGTAGCTGTTTTAAAGAGATACCCGTTCGTGAA
Found at i:202982 original size:20 final size:21
Alignment explanation
Indices: 202937--202983 Score: 69
Period size: 21 Copynumber: 2.3 Consensus size: 21
202927 CACTCACTAG
*
202937 ATAGAAGCGTAGCTGTTTTAA
1 ATAGAAGCGTAGCTGTTTCAA
*
202958 ATAGAAGCGTAGCTG-TTCGA
1 ATAGAAGCGTAGCTGTTTCAA
202978 ATAGAA
1 ATAGAA
202984 TAGTCTCGTT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
20 9 0.38
21 15 0.62
ACGTcount: A:0.36, C:0.11, G:0.26, T:0.28
Consensus pattern (21 bp):
ATAGAAGCGTAGCTGTTTCAA
Left flanking sequence: Indices 202437 -- 202936
TCTTACTATAAGGAAAACGGAGCGGAAGTTGGAAAGGCGTTCCATTTAAAGCGATCTTCTTCTAA
GCGGAAACGAGACTAGAAACTCGAATTCCAGTTTGAACTATAAGGAATTGATGTAGCAGTTAAAG
AATGAAACTTGGCTTCAAGCCGGGCTAGGAACTTCGAACCTACTCCTTTTCCCTGAACTCGTAGC
TTCGCTTCGTCATCAAATATGCCTATTCTAATTGGTAAGCCAAGTCCGATCGATCTTAAAGCTAC
GAGGTTCCCGTTCTCAATTCTTCTTTCACTCCTCTCTTCCCTTATAGTCTATCGAGTTGCTTTTA
GCTCCTTTCCCTGCTACATAAAGTCAAACAGCTTCGCGCCTCTCCTGTAAGTCGAGTCGCTTTTC
AGCTCCTTTCCCTACGGTCAAGTGGCTTTCGCTCCTTCCAACAAGTATAGAAGCGTAGCTGTTTT
AAAGAGATACCCGTTCGTGAACCTTACCTAAGGTTCACTCACTAG
Right flanking sequence: Indices 202984 -- 203483
TAGTCTCGTTGCTTTTCGCCTCTCGCATTCGTTATTAGTTGCTACGCTGTTCTTCTTTCACTCCT
CTCTTCCCCTAAGGCCATTTGCGGCGCATTTAACGCGGCGACAGCCCCCCGCATACCCAATATAT
CATGAGAGTGGCGGAACGGGGCTTAAAAGCGCCGGAAATGGGCTGTTAGCTTTCCAACCTTATAA
TCAAGCAAGTGAGGAAGGGCGTTCCATGCCTATTCGAATAGAACTATTCTAAGCGTAGCAGTTCT
AAGAAAACTCTTACTTACAGGAGAGGCGCTTTAGCCGCTCGACCGTAGGGAGAGGAGTGAAAGCC
ATTTGAGTTTTCGCTTGCTTGATTATTTGGAAAGGGGCGGAAATACGGTTGTTTACTTGCTTACT
TTTCTGAGAAGCTCTTTACGACTATAAAGGACAGGGGGCTGTTCACCTTTGGAAACTTAGCTAGA
CCGGTCACGACATGTTGTTTGTTGATATTTATTGAGGAGTTTAGC
Found at i:203906 original size:27 final size:27
Alignment explanation
Indices: 203868--203943 Score: 152
Period size: 27 Copynumber: 2.8 Consensus size: 27
203858 AACTGCTACG
203868 CTCCTCTTCCTCTCTGTTCTTCTTTCA
1 CTCCTCTTCCTCTCTGTTCTTCTTTCA
203895 CTCCTCTTCCTCTCTGTTCTTCTTTCA
1 CTCCTCTTCCTCTCTGTTCTTCTTTCA
203922 CTCCTCTTCCTCTCTGTTCTTC
1 CTCCTCTTCCTCTCTGTTCTTC
203944 AACACTCCTC
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 49 1.00
ACGTcount: A:0.03, C:0.42, G:0.04, T:0.51
Consensus pattern (27 bp):
CTCCTCTTCCTCTCTGTTCTTCTTTCA
Left flanking sequence: Indices 203368 -- 203867
CTTACTTTTCTGAGAAGCTCTTTACGACTATAAAGGACAGGGGGCTGTTCACCTTTGGAAACTTA
GCTAGACCGGTCACGACATGTTGTTTGTTGATATTTATTGAGGAGTTTAGCTGACTGAATCCATA
AACCGTCAAAGTCACCGTCACTGGTACTTTTGTGACTCTATTCTATAGGTAGGTATAGGTATTGG
TGGAGCTTGCGTAATGTAGTTGTAGTTAAGACGAAAGGGGAAGGAAGCTCGACCGGGTAGACGTA
ATGAAGCTCGACCGGGGGCGAAGCTGTTTGAACGAGAACGAATGTGAGGGGCGAAGCTACTCGAC
TGTAGGGAGAGGGGCGCTGTTCTAAGAAAACTCTTACTATAAGGAGAGGCGCGAAGACAAGCCGC
GAACTATGAACGAAGGGCAAGATCTGCAGCTACAGCCTTGGCAACTTAAACAGCCTCGGCGGCAA
CCGCTTTCTGCTTCCTTGTGGAATAGTTCAATTCGAACTGCTACG
Right flanking sequence: Indices 203944 -- 204443
AACACTCCTCTCCTTACAGTCTCGTTTCTTTCCACTCCTTTCCTTTTAAAGCGATCTTCTTCTTC
AAGCATTCAAAATGTATGAACTCAACCCGCTTTCACAATGAAGTGAAAGACAAATGAGTTTAGCT
TGAAGAGGAAAGGAGTTTTAACAAGCAAGGAAGGAACGAGTCGCTTCCCCCTTTCCTTCACCACC
AGCCCTCGCCCCTTTTGAAAAGCAGAAATGCGACGTTTCAAACCGAAATTGTACTTTCCAATATG
CCTATTCGATCCAATATGCCTATGAGAATTGAACTATGATATTAGCCTATTCGAATTGAACTATT
CTATTATTCGAATTTCACTATGATATTATGAGAATTGAACTATTCTATTAGTTGCGTAGCAGTTC
TAATTAAAGAACTATTAGTACCCTTTACTTAAGAGATTACTTTCTTAGTAGTTGCGTCTCGTCTC
ATTTCCTTACTTCTTGCCTATGAGAATTGAACGATTCTATTAGAA
Found at i:204276 original size:22 final size:22
Alignment explanation
Indices: 204251--204318 Score: 82
Period size: 22 Copynumber: 3.1 Consensus size: 22
204241 GATATTAGCC
204251 TATTCGAATTGAACTATTCTAT
1 TATTCGAATTGAACTATTCTAT
** **
204273 TATTCGAATTTCACTATGATAT
1 TATTCGAATTGAACTATTCTAT
**
204295 TATGAGAATTGAACTATTCTAT
1 TATTCGAATTGAACTATTCTAT
204317 TA
1 TA
204319 GTTGCGTAGC
Statistics
Matches: 36, Mismatches: 10, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
22 36 1.00
ACGTcount: A:0.34, C:0.12, G:0.10, T:0.44
Consensus pattern (22 bp):
TATTCGAATTGAACTATTCTAT
Left flanking sequence: Indices 203751 -- 204250
AAGCCGCGAACTATGAACGAAGGGCAAGATCTGCAGCTACAGCCTTGGCAACTTAAACAGCCTCG
GCGGCAACCGCTTTCTGCTTCCTTGTGGAATAGTTCAATTCGAACTGCTACGCTCCTCTTCCTCT
CTGTTCTTCTTTCACTCCTCTTCCTCTCTGTTCTTCTTTCACTCCTCTTCCTCTCTGTTCTTCAA
CACTCCTCTCCTTACAGTCTCGTTTCTTTCCACTCCTTTCCTTTTAAAGCGATCTTCTTCTTCAA
GCATTCAAAATGTATGAACTCAACCCGCTTTCACAATGAAGTGAAAGACAAATGAGTTTAGCTTG
AAGAGGAAAGGAGTTTTAACAAGCAAGGAAGGAACGAGTCGCTTCCCCCTTTCCTTCACCACCAG
CCCTCGCCCCTTTTGAAAAGCAGAAATGCGACGTTTCAAACCGAAATTGTACTTTCCAATATGCC
TATTCGATCCAATATGCCTATGAGAATTGAACTATGATATTAGCC
Right flanking sequence: Indices 204319 -- 204818
GTTGCGTAGCAGTTCTAATTAAAGAACTATTAGTACCCTTTACTTAAGAGATTACTTTCTTAGTA
GTTGCGTCTCGTCTCATTTCCTTACTTCTTGCCTATGAGAATTGAACGATTCTATTAGAAGGCAA
GAAGTAAGGCCATTTGCGGCACATTTAACACGGCTTAAACCTCCCTCATTACCAATCTCACATTA
GAGTTCGGAAAGGGGGCTTAAAAGCATCGCAAATTGGGTGTTAGCTTTCCAACGAGGGTGGATTG
AATGAAGCGACATCATCAAATATGCCTATGAGAATGGAACTATGATATTAGTTGTTCTCAGTCTT
CAATTTGCCCTTTCTTGCTTAGTAAGGCGCAACGGCTTTCGCGCAGCTGCTACGCAACTAATTGA
ACTATGATATTAGTTCAAGTCAAGGTTGTAGAAAGAAAGTCTACCGGACGTGGGAAAACTGACTT
CTAGTGAGGGAGGGCGAGCTTTAATTGAAGTAGGAGCGTTTAGCC
Found at i:206818 original size:34 final size:34
Alignment explanation
Indices: 206774--206849 Score: 100
Period size: 34 Copynumber: 2.2 Consensus size: 34
206764 GCTGAAAAGA
206774 AGAACAGCGTAGCAACAAAT-TGAATAGTTCAATG
1 AGAACAGCGTAGCAACAAATAT-AATAGTTCAATG
* * *
206808 AGAACTGCGTAGCAACAAATATCATAGTTCAATT
1 AGAACAGCGTAGCAACAAATATAATAGTTCAATG
*
206842 CGAACAGC
1 AGAACAGC
206850 TACGCTTATA
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
34 35 0.97
35 1 0.03
ACGTcount: A:0.42, C:0.18, G:0.18, T:0.21
Consensus pattern (34 bp):
AGAACAGCGTAGCAACAAATATAATAGTTCAATG
Left flanking sequence: Indices 206274 -- 206773
CAAGAAGTAAGGAAATGAGACGAGTGAAAGCAACTCGCCTTAGAACTGCTACGCTTAGAATTGTA
CTTTCCAATATGCCTTGTTCTAATATCATAGTGAAATGAGAATAGGCTAATTGCGTAAAGGAAGG
AGATGAAAGAAGCTCGACTAAAAGGAGAGGAGATGAAAGAAGAACAGAAGGGCGTGGAAAGCTAC
TCTAACAAGTCAGTCTTTCTCCTTACTCTAACAAGTCAGTCTTTACTTTTCCTCTCCTGTAAGTA
AAAGCGAGCAGTCTGGAACTCCTTTCCCTGCTACATAAAGTCGACGTTCTTGTGCTTAAGTAATT
GATTAAGAGAAGAAAAGAGGAGAACAGCTACGCAACTCTCCTTTATTCTGTCTAAACGCTCCTTT
CTTTTGCTTGTTTTCGCTACCTTCCCCACTCCTCTTAGTCTTTAAAGTCGAGATTGGGTTGGTGT
TCAATAACTATACTATACTATAAGGAAAGAAAGGAGCTGAAAAGA
Right flanking sequence: Indices 206850 -- 207349
TACGCTTATAATTGAATAGTTCCATTAGAATAATAGAATAGTTCAATTCGAATAGGCAAGAAGAG
CATTTGAAATAGGAGCAGAGTCTGTCACGTGCAGCCTACTCTCTTCGCTCCTCTCCTGTAAGTAA
AAACGAGTGGTCAACACTCCTCTCCTTACAGTCGAGTGGCCCGGGGCTCCTCTCGCATTCGCTCG
AGCAGCTTTCGCTCCTTTCCTTTTTATGGCTTTCGCGCCTTAGTCTTCAGAGTTGCTAAACGCTC
CTTCCCTTAACTGGAAAGTTGTCAACATTCCTCTCCTGTAAGTCTCGTTGCTTGAAGCTATTCCT
GATCTGATTACCGATTCGCTCTGAAGGAAGCTTTCGGCGCCTTTCCTTCCGCTCCTTTCCAACTA
TAATAAAGAAAAGCTCAAACGCAAGTAGCTCCACTCCTCTCCTTACGTCGAGTGACTTTTAGCTC
CTTTCTTAGTCAAGAAAGTGGCTCCGCACCTCTCGCATTCGCTCG
Found at i:206882 original size:22 final size:22
Alignment explanation
Indices: 206857--206903 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
206847 AGCTACGCTT
* *
206857 ATAATTGAATAGTTCCATTAGA
1 ATAATAGAATAGTTCAATTAGA
*
206879 ATAATAGAATAGTTCAATTCGA
1 ATAATAGAATAGTTCAATTAGA
206901 ATA
1 ATA
206904 GGCAAGAAGA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.45, C:0.09, G:0.13, T:0.34
Consensus pattern (22 bp):
ATAATAGAATAGTTCAATTAGA
Left flanking sequence: Indices 206357 -- 206856
TCTAATATCATAGTGAAATGAGAATAGGCTAATTGCGTAAAGGAAGGAGATGAAAGAAGCTCGAC
TAAAAGGAGAGGAGATGAAAGAAGAACAGAAGGGCGTGGAAAGCTACTCTAACAAGTCAGTCTTT
CTCCTTACTCTAACAAGTCAGTCTTTACTTTTCCTCTCCTGTAAGTAAAAGCGAGCAGTCTGGAA
CTCCTTTCCCTGCTACATAAAGTCGACGTTCTTGTGCTTAAGTAATTGATTAAGAGAAGAAAAGA
GGAGAACAGCTACGCAACTCTCCTTTATTCTGTCTAAACGCTCCTTTCTTTTGCTTGTTTTCGCT
ACCTTCCCCACTCCTCTTAGTCTTTAAAGTCGAGATTGGGTTGGTGTTCAATAACTATACTATAC
TATAAGGAAAGAAAGGAGCTGAAAAGAAGAACAGCGTAGCAACAAATTGAATAGTTCAATGAGAA
CTGCGTAGCAACAAATATCATAGTTCAATTCGAACAGCTACGCTT
Right flanking sequence: Indices 206904 -- 207403
GGCAAGAAGAGCATTTGAAATAGGAGCAGAGTCTGTCACGTGCAGCCTACTCTCTTCGCTCCTCT
CCTGTAAGTAAAAACGAGTGGTCAACACTCCTCTCCTTACAGTCGAGTGGCCCGGGGCTCCTCTC
GCATTCGCTCGAGCAGCTTTCGCTCCTTTCCTTTTTATGGCTTTCGCGCCTTAGTCTTCAGAGTT
GCTAAACGCTCCTTCCCTTAACTGGAAAGTTGTCAACATTCCTCTCCTGTAAGTCTCGTTGCTTG
AAGCTATTCCTGATCTGATTACCGATTCGCTCTGAAGGAAGCTTTCGGCGCCTTTCCTTCCGCTC
CTTTCCAACTATAATAAAGAAAAGCTCAAACGCAAGTAGCTCCACTCCTCTCCTTACGTCGAGTG
ACTTTTAGCTCCTTTCTTAGTCAAGAAAGTGGCTCCGCACCTCTCGCATTCGCTCGAGCCGCTAA
AGCGCCTCTCCTTTCTTTCCTTCTTTCCGCGCCTCTCGCATTCGC
Found at i:224090 original size:30 final size:30
Alignment explanation
Indices: 224052--224124 Score: 128
Period size: 30 Copynumber: 2.4 Consensus size: 30
224042 AGATATTTAG
224052 GGAAAGGGGCCTTCAGCCACTTGACTGGTT
1 GGAAAGGGGCCTTCAGCCACTTGACTGGTT
* *
224082 GGAGAGGGGCGTTCAGCCACTTGACTGGTT
1 GGAAAGGGGCCTTCAGCCACTTGACTGGTT
224112 GGAAAGGGGCCTT
1 GGAAAGGGGCCTT
224125 GTCGGCCACC
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 39 1.00
ACGTcount: A:0.19, C:0.21, G:0.38, T:0.22
Consensus pattern (30 bp):
GGAAAGGGGCCTTCAGCCACTTGACTGGTT
Left flanking sequence: Indices 223552 -- 224051
TCCTCAACTTAAGGCGCACCTACTCTTACTAGAAGTCTAGTCTCTCTCAGGTCCAGTTTCGATCT
CTAACTAACTTACAACATAGGCCGGAAGAGAGATATTCAGAAAACCCGATTTCCTGTCTTAAGAA
CCTGACTCAAAAGAGAAAAGAAGACCGGACTAAAAGAGATCTCACTTTCGACGATTGAACTTGAC
TTTTATATCCAGATTGGAACTGGACTTAAACGTCTTTGGATCCTGCTTAGGGCCGGCTTTCACTC
CACTTTCACTTTCATATCAGGAACGTCGACTTGCACTTGCAATATCGAATTTGACTTTCCGGAAT
CCTTGCTCCTGGCTTATATTCACATAGGCCACTCATAAGAATAAGACGTTCAACTCCCTAAAACA
CGTGTAATTGAGAGAGTCATCATATCAGTGCCTTGGGGAAATGCCTACCTTCAGGAGAAGATTAC
CGAATGAGTTTCAAACCTGTCCTCTTCGCTTCCCAAGATATTTAG
Right flanking sequence: Indices 224125 -- 224624
GTCGGCCACCGCTTGCTGACGACGGAACGCATCGTCAATTAAAGGGTCCTCGCCTTGGACTTAGT
TGGAAAGGTAGGTGTTCGGCATGTCCCTTGCTTGCGAACTTCTTTAGTAGGGCGGAGGTGCCATT
CCTCACGTTTACCGTTGTCCCCAGACTTCACTCTTTCAACACTTGTATACTTTCTAAAGAGTCAG
GCATGCCCCTGTCCCTGTCTCCAAGTGTGTGATCCACCGATTCACTGAGTGACTTTTTCTTACCG
CTGCGCTGGAGTCCCTATCTCAACAAGGGTTGGTGTGGCAGACTTCCCCCTTGTTTGCCGATTGA
AGAAAGCCTTATATGGCTTCAAACAAGCGAGAAAGGCCCTTTCTATCTTATTAGTCAAGCGCGCT
AGCTGCAATCAAAAAAGAGCGCTAACGAGCAAGAAAAGGGATGCAGCAAGAAAACGGATGCGCGT
GACAGCAAGAAAATGGATGCAGCAAGAAAACGGATGCGCGTGACT
Found at i:224564 original size:17 final size:17
Alignment explanation
Indices: 224542--224616 Score: 60
Period size: 17 Copynumber: 4.0 Consensus size: 17
224532 AGCGCTAACG
224542 AGCAAGAAAAGGGATGC
1 AGCAAGAAAAGGGATGC
*
224559 AGCAAGAAAACGGATGCGCGTGAC
1 AGCAAGAAAA--G--G-G-ATG-C
*
224583 AGCAAGAAAATGGATGC
1 AGCAAGAAAAGGGATGC
*
224600 AGCAAGAAAACGGATGC
1 AGCAAGAAAAGGGATGC
224617 GCGTGACTAA
Statistics
Matches: 47, Mismatches: 4, Indels: 14
0.72 0.06 0.22
Matches are distributed among these distances:
17 27 0.57
18 2 0.04
19 2 0.04
20 1 0.02
21 1 0.02
22 1 0.02
23 2 0.04
24 11 0.23
ACGTcount: A:0.44, C:0.16, G:0.32, T:0.08
Consensus pattern (17 bp):
AGCAAGAAAAGGGATGC
Left flanking sequence: Indices 224042 -- 224541
AGATATTTAGGGAAAGGGGCCTTCAGCCACTTGACTGGTTGGAGAGGGGCGTTCAGCCACTTGAC
TGGTTGGAAAGGGGCCTTGTCGGCCACCGCTTGCTGACGACGGAACGCATCGTCAATTAAAGGGT
CCTCGCCTTGGACTTAGTTGGAAAGGTAGGTGTTCGGCATGTCCCTTGCTTGCGAACTTCTTTAG
TAGGGCGGAGGTGCCATTCCTCACGTTTACCGTTGTCCCCAGACTTCACTCTTTCAACACTTGTA
TACTTTCTAAAGAGTCAGGCATGCCCCTGTCCCTGTCTCCAAGTGTGTGATCCACCGATTCACTG
AGTGACTTTTTCTTACCGCTGCGCTGGAGTCCCTATCTCAACAAGGGTTGGTGTGGCAGACTTCC
CCCTTGTTTGCCGATTGAAGAAAGCCTTATATGGCTTCAAACAAGCGAGAAAGGCCCTTTCTATC
TTATTAGTCAAGCGCGCTAGCTGCAATCAAAAAAGAGCGCTAACG
Right flanking sequence: Indices 224617 -- 225116
GCGTGACTAACGCGCAACGGCTTTCACGCTAGTGCGCTCATCCGCTGCTTGTTGCGCAACGGCTT
TCGCGCAGCTGCTGCGCCCTTGCTTCTTGCTTTCGAGCCGGAGCTTGCTGGGTAGTGAAGTGGTC
CGTGAAGGTTAAATAAGACTTGTGTTAAGCAAGCAGAGTAGTCAAGCCAGAGAGGAAAAAAAAGC
AAGAAGCGGCTAGTTGTCTATCTAGGGCGATCGACGGAATCAATCGTACTTTCACTGCTGTGGAC
CGGCTTTCATAAAGCACCTTTGGGCAGCAGCTACTATTGGGATCCAATTTCGAGATCAATTCGAC
AATGAAACTCTTTAAGCAATGATCTTCTCTATGTCATTTCTCTTGACGCGATACAAAAGACGACT
TTCGAGAGTCACTTAGCCCCTTGACCTCTTCTCTCAAAAAAGACGCTGTGCGGGCAAGTCGATCA
AAGTCAGAGCGGGGAGGGAATGTTTATTTACAGTTGTTGTAGTAC
Found at i:224599 original size:41 final size:41
Alignment explanation
Indices: 224542--224623 Score: 155
Period size: 41 Copynumber: 2.0 Consensus size: 41
224532 AGCGCTAACG
224542 AGCAAGAAAAGGGATGCAGCAAGAAAACGGATGCGCGTGAC
1 AGCAAGAAAAGGGATGCAGCAAGAAAACGGATGCGCGTGAC
*
224583 AGCAAGAAAATGGATGCAGCAAGAAAACGGATGCGCGTGAC
1 AGCAAGAAAAGGGATGCAGCAAGAAAACGGATGCGCGTGAC
224624 TAACGCGCAA
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.41, C:0.17, G:0.33, T:0.09
Consensus pattern (41 bp):
AGCAAGAAAAGGGATGCAGCAAGAAAACGGATGCGCGTGAC
Left flanking sequence: Indices 224042 -- 224541
AGATATTTAGGGAAAGGGGCCTTCAGCCACTTGACTGGTTGGAGAGGGGCGTTCAGCCACTTGAC
TGGTTGGAAAGGGGCCTTGTCGGCCACCGCTTGCTGACGACGGAACGCATCGTCAATTAAAGGGT
CCTCGCCTTGGACTTAGTTGGAAAGGTAGGTGTTCGGCATGTCCCTTGCTTGCGAACTTCTTTAG
TAGGGCGGAGGTGCCATTCCTCACGTTTACCGTTGTCCCCAGACTTCACTCTTTCAACACTTGTA
TACTTTCTAAAGAGTCAGGCATGCCCCTGTCCCTGTCTCCAAGTGTGTGATCCACCGATTCACTG
AGTGACTTTTTCTTACCGCTGCGCTGGAGTCCCTATCTCAACAAGGGTTGGTGTGGCAGACTTCC
CCCTTGTTTGCCGATTGAAGAAAGCCTTATATGGCTTCAAACAAGCGAGAAAGGCCCTTTCTATC
TTATTAGTCAAGCGCGCTAGCTGCAATCAAAAAAGAGCGCTAACG
Right flanking sequence: Indices 224624 -- 225123
TAACGCGCAACGGCTTTCACGCTAGTGCGCTCATCCGCTGCTTGTTGCGCAACGGCTTTCGCGCA
GCTGCTGCGCCCTTGCTTCTTGCTTTCGAGCCGGAGCTTGCTGGGTAGTGAAGTGGTCCGTGAAG
GTTAAATAAGACTTGTGTTAAGCAAGCAGAGTAGTCAAGCCAGAGAGGAAAAAAAAGCAAGAAGC
GGCTAGTTGTCTATCTAGGGCGATCGACGGAATCAATCGTACTTTCACTGCTGTGGACCGGCTTT
CATAAAGCACCTTTGGGCAGCAGCTACTATTGGGATCCAATTTCGAGATCAATTCGACAATGAAA
CTCTTTAAGCAATGATCTTCTCTATGTCATTTCTCTTGACGCGATACAAAAGACGACTTTCGAGA
GTCACTTAGCCCCTTGACCTCTTCTCTCAAAAAAGACGCTGTGCGGGCAAGTCGATCAAAGTCAG
AGCGGGGAGGGAATGTTTATTTACAGTTGTTGTAGTACGACTTTT
Found at i:251398 original size:17 final size:17
Alignment explanation
Indices: 251376--251409 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
251366 TGTTCAAGTA
251376 TTCGATATCTCTCTTTT
1 TTCGATATCTCTCTTTT
251393 TTCGATATCTCTCTTTT
1 TTCGATATCTCTCTTTT
251410 CTTGATCCAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.12, C:0.24, G:0.06, T:0.59
Consensus pattern (17 bp):
TTCGATATCTCTCTTTT
Left flanking sequence: Indices 250876 -- 251375
AACAGGCTGCAGCGGCCTTTTTTCTTCCGTTTACAACCGCAGGAAGCCTCTAGCAATTCGAATTC
TATACAGATTATTATCCTTTTCCCGCGAAAATCTTAATATCCAGAAGTAGCTTAATCGGAGGATT
GAGTCACTGCGCCAGCTTCTTTCTCTTGTGTTCATGGCATCGGAGTGGGTAACCCGCCTAAAGGG
GTAAGGTTCTCGCCCGCGAAGCCATCTGTCAATAGGAGCTCTGGTCCTTGCCCGGGGTCATATCA
TATTATAGCGCTACTGATATATATATATAAGTATTAGGAATTCTCCATTAAGTGAAATCTACAGA
TGCATTATTCCTCCTGAGCCTTGGAATGGAATAGCCCTTCTCATCAACAAATCCTTAAATGAAAT
GCTCCAAACGAAGAAGCAGACGAGCGAAGCGAAGGAGCGAAACGGTCAACGGTCAGGCGCCGAAG
AACTACACCTTAATGAAGTGAGTGAATGCGATAGTTGTTCAAGTA
Right flanking sequence: Indices 251410 -- 251909
CTTGATCCAGCAAGGAATGCTTTGAGCTAAACTACCTCTTAGAATGACTTCCGCTGCGAAACTTA
CTACTTCGGTTAGCTTTGCTTTCGCCGTTCCATCTAATGGGTACCTCTTCCTGAGCGAGAGAGTG
CTTTAATGTGTTATGGCGGTAAAAGTGTTCAGTTCATTCTGCTATCCTACTCTAGTCCCATTCAA
TGTCAACCAGTCCAGTCCCTGTGACTTGCTTTCCTTTCTTGGAATGAGTTACTCTAGGTCTACAT
ATATTATTTCAACAACTGAAAAAAACAGGCTCAGCAAAAATCATAAGAGAACAACGGCCATAGAA
AAAAAAGGGAGCAGGCGAGAGGCACAAAAGGGATTGAACGGAAAGGTCAGTAACCCTAAGTGGCA
ATGTTGGCTCGGTAGAGAGTCAATTACCTCTGTGCTTCGATCTCGTTCTCCGATTGAGCTTTAGC
CCGAGTAGATTGCTACCCAGGACGTATGTCGGGAATCCAGGTGAT
Found at i:261576 original size:14 final size:14
Alignment explanation
Indices: 261557--261591 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
261547 GGTGGTCTCG
*
261557 TATCATATAAATAA
1 TATCATATAAAGAA
261571 TATCATATAAAGAA
1 TATCATATAAAGAA
261585 TATCATA
1 TATCATA
261592 GGCCCGTCCT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.54, C:0.09, G:0.03, T:0.34
Consensus pattern (14 bp):
TATCATATAAAGAA
Left flanking sequence: Indices 261057 -- 261556
TCGCTAGGAAAGAAAGTCTAGCCATACCGAGAAGCCCCATCGGAGGATAGAACTAGAGTACAGCT
CGGGATAGCCGGGCCTGAGGCATAAGTCAATCTACGGGGAGTTCTCATTACAGGGGAGGTGATAC
CTAGATAGAGAAGAGGAAGAGGACTCACTCCATTTATCTTTATGTCTGGCCCCAGCTTTAAGAAT
GATTTGGGATCATTCACGGGGGAGTTGTTAATAGAGAGTTCCTTATATATAAGCAAGTAAACTAC
CTTTGGTTCGTGGTTTGCCTTGAGCACGAACTCGGTTCAGAGGAAGACAAGCAAAGACGAGACAG
AGAGTGATCGTAAGTATTCTCTGTTACCCCAGTTCTCAATTATTTCGTAGAAGCGGGCATTGAGA
CCAGGAAGGTGGGGCTTAGTAGAGGTTTCTAGTGGATGAGGTTTTTGCTATTGAATTAAGAACCG
CTGCTACAGTTGGAGTTGACGGTCCTTCTATCAATGGTGGTCTCG
Right flanking sequence: Indices 261592 -- 262091
GGCCCGTCCTCCCTTTCCTCTTGCTTTAGGTGAATTACCGGTGCTTGATGCAATAACCGGTGTGA
CAGTAGGAACTAAACTCTTGGTCTTATATCAGTTGCCGCGGTTGTCGGACTCGAAATTGAATCAC
TAACCACTGTGAGAGTCACCGGTGTAAGATAGAAGACTGCTATAGAATCAGAATAAGCTGTTGTG
CACGAATAAGCTCTTTTCAGGTCTAGAAGTAAGAACTCTTGAGTAAGCCGATTACCTTCTGACTT
TCCTCTTGATGACGAAAAAGACGCTGTTTTATAAAGTGGTCCGCTTTCAATTGACGTCTAGGAAG
GGAAATCAACTTGCAACCAATTTTACGGGGAAAAGGCTCCAATGTCACCATTGAAGTCTAACTTA
GGGGGGAAATCGGATTGCAAGCAAAAATCCCAAGAAAATGAAAGATTACTCAGATCAGGGGGAAG
GGGGTGCTATAGCCCTTGTTCAAGAATGGCTTTTGTTCAATCAGA
Found at i:263825 original size:31 final size:31
Alignment explanation
Indices: 263782--263841 Score: 111
Period size: 31 Copynumber: 1.9 Consensus size: 31
263772 AGTCTCGTTC
263782 AAGCAACTTTCCTGCTAAGGGAAGGCGCGAA
1 AAGCAACTTTCCTGCTAAGGGAAGGCGCGAA
*
263813 AAGCCACTTTCCTGCTAAGGGAAGGCGCG
1 AAGCAACTTTCCTGCTAAGGGAAGGCGCG
263842 TGGAACCGGG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.28, C:0.25, G:0.30, T:0.17
Consensus pattern (31 bp):
AAGCAACTTTCCTGCTAAGGGAAGGCGCGAA
Left flanking sequence: Indices 263282 -- 263781
AGGAAAGGAGTGGAAGGCCGTTTGAACTCGCTTTTACTTACAGGAGAGGAGCGGAAAGAAGAACA
GCGTAAGCGAAGCAACTTTCCAGTTAAGGAGAACAGCGAAGCAACGAGCGAGACAGACTTGTTGG
AAGGAGAGTCGTTCCGTTCCAAGCTACTCGCCTTAGAACAGCTACGCCACTTTCCTGCGCTGAAA
AGCCGCTTTCAGGAGTGAAGCAGCTCGACCGTAGGGAGAGGAGTGGAGGCTACTTGCTACATGAG
GGAGGGTTAAGCCGCGTTAAATGCCCCGGAAATGGCCTTAGGGGAAGAGAGGAGCGTTTAGACAC
TTGACTGTAAGGAAAGGAGCAAAGCTGCTCGAACGAATGTGAGAGGAGTGGAAGAAGAACAGCGT
AGCCACTCGACTTTAAAGAAGGAGAGGGGCGTAGCAGTTCGAATTGAACTATTGAATTATAACAA
GGCATGGAACGCCCTTTCTTTTATTCCGCGTTTATAGTCTCGTTC
Right flanking sequence: Indices 263842 -- 264341
TGGAACCGGGGAGAAGGATTATTGAAACCAGTTCAAATGGAGGCGGAAAATCTGTTGATAAATGA
ATTCCAATTTGTTGACTATTACTTAGAAAATCTTGCTCTATAATCTGGTTTGATCTTGTAGTCCA
AATAATCCCGCACCACCAGTGGCATCGTAGATAGAAGACCTATGCATCAGTCTACTGTCATGATC
ACATATTAGCTCGATTTTCTTGTTTGCTTCGTTCTTCTCTTTCTAACCAAACAATTACTAGTACA
AGAGTCAAAAGAGGAAAGGAGTGAAAACCACTTTCCAGTTAAGGGAAGGTTAAGCAACTCTCTTG
ACTATAAGGTTTGAGAGGCGTGAAAGCTGCTCGCTTTCCTATAAGTAAGGAGAGGAGTAAAAAGT
TACGCCACGAGACTATAAGGAGTTCCAAGCCGCTTTCAGGGGTGGAAAGCTTTAGAGACTCGACT
CGAATGCCCTCTTAGCAATAGCATCCGTAACCGCAGCTATTGAGT
Found at i:265707 original size:71 final size:70
Alignment explanation
Indices: 265591--265723 Score: 232
Period size: 71 Copynumber: 1.9 Consensus size: 70
265581 CAAATTCTAT
265591 TTTGACAAGCACCTGTAGTACGGAAAATGCTTTCTGTCATTTTGCA-TATAGGTGGGACATCCGT
1 TTTGACAAGCACCTGTAGTACGGAAAATGCTTTCTGTCATTTTGCACTATA--TGGGACATCCGT
265655 TTTCTTG
64 TTTCTTG
265662 TTTGACAAGCACCTGTAGTACGGAAAATGCTTTCTGTCATTTTGCACCTATATGGGACATCC
1 TTTGACAAGCACCTGTAGTACGGAAAATGCTTTCTGTCATTTTGCA-CTATATGGGACATCC
265724 AAATTCTATT
Statistics
Matches: 60, Mismatches: 0, Indels: 4
0.94 0.00 0.06
Matches are distributed among these distances:
71 56 0.93
73 4 0.07
ACGTcount: A:0.24, C:0.20, G:0.21, T:0.35
Consensus pattern (70 bp):
TTTGACAAGCACCTGTAGTACGGAAAATGCTTTCTGTCATTTTGCACTATATGGGACATCCGTTT
TCTTG
Left flanking sequence: Indices 265091 -- 265590
AAAATAGCTATTAAACGATGTCTTTGGTTTACTAGAGACATCAACATATTGTTTTAGCTCGGTGG
AAACAAAATCCTTTTCCTCAGGATCCAGAAATAGAGAACGAAATAACTAGAAAGGTTGTTAGAAT
CCCCCTCTTCTAGAAGGATCATCTACAAAGCTATTCGTTTTATCTGTATTCAGACCAAAAGCTGA
CATAGATGTTATGGGTAGAATTCTTTTTTCTTCTCATTACCAATCCCGCATTAGAGTTCGGGAAG
GGGGCTTAAAAGCATCGGAAATGGGGTGTTAGCTTTCCTTATAGGAGAGGAGTGGAATAAAGGAA
AGGCGCGAAAAGCAACTTGACTATAAACTTAGAACAGCTACGCCACTCAACTAGAAACTCGAATT
CCAGTTTGAACTCTTATATAAACTATATAGAAGAACTGCTACTAATAGTTCTTTAATTAGAACTG
CTACGCTTATAATAGAATAGTTCAATTCGAATAGGCAAATTCTAT
Right flanking sequence: Indices 265724 -- 266223
AAATTCTATTGCGCGGTAGAAAGCTCACCCGTTGCTTGTTGCTAGTGCGCTCATCCGCTGCTTGG
TCCCGTTGCTTGTTCCATTGCAGCTTTCAACTCCTTTCTGTCCCATATAGGGGGAAAAGTAGACA
ACCCTATTTTCACTCTAAGAAAGCAATTCTAAATCACATTTTGATGTCCCACCTATATGCAAAAT
AAGACAACAACAAGGGGAAGAGGTAGTTAACACAAACAAGTAGCTGCAGTAACTCATCTCTTTAA
GAAGCTTAGCTGCAGCCGTTACACTGCTCTAATAACTCAGCTATAAGGAGAAGGAGAAGGAGAGG
AGCGAAGCCATAAAAAGGAGAGGCGCGTAGCTGTTCTAAGAAAACTCTTACTTACAGGATAGTTG
ACCGCTCGCTTTGCCTGATAAGTGGACAAGGGATCTTTGCTTTAGTTGCCTTAGCTAGCCTATAT
TGAACTGAACCCTGGACGGATTGGTTCCAGTTAGGCGAATTGGTC
Found at i:275744 original size:42 final size:42
Alignment explanation
Indices: 275696--275781 Score: 163
Period size: 42 Copynumber: 2.0 Consensus size: 42
275686 CGTGACTAAC
275696 GCGCAACGGCTTTCACGCTAGTGCGCTCATCCGCTGCTTGTT
1 GCGCAACGGCTTTCACGCTAGTGCGCTCATCCGCTGCTTGTT
*
275738 GCGCAACGGCTTTCGCGCTAGTGCGCTCATCCGCTGCTTGTT
1 GCGCAACGGCTTTCACGCTAGTGCGCTCATCCGCTGCTTGTT
275780 GC
1 GC
275782 ATCGGAACAA
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.10, C:0.34, G:0.28, T:0.28
Consensus pattern (42 bp):
GCGCAACGGCTTTCACGCTAGTGCGCTCATCCGCTGCTTGTT
Left flanking sequence: Indices 275196 -- 275695
CCATTCTTTATAGCCGTTACGAAAGCTCCCGAAGAGAAAGAGGTCTTTGCTGCTTGACTGCGTGA
ACCAGGTCCAGGTCTTGCATTTGGCATTCCCGCTGTTGACGTCCCATCGAGTTAGCTAGTGTTGG
GTGAAAGGGATTTAGGAATGAATAGCAGGCAAAGTCCTTGCTAGGAATTCCGGGTAACTTTCTGT
ATTCCTTAAGGTTAGAGGTGAAGCTTACTTCCTGCGGTAGCCCCTTGGACCTTAGCCTCTTAAGG
GTTGGGTTCTAGTGGCGGGCTCTTGGGTCGTCCGGACCCATATCTGGTAAAAGTGGTGGCCTGGT
TGTCCCCACACCCCCTTATCATGCGTGTCTGTGGGAGCAGTTTGTGCTAGCGTTTTGGCGCTCGC
CTTATGGTTCTCAGTCCTCTTTCGCCGAGATGCCTTTTAAAAAGATTTTTTCCCGCATCGGAACA
AGCAAGAAAACGGCTGCAGCAAGAAAACGGATGCGCGTGACTAAC
Right flanking sequence: Indices 275782 -- 276281
ATCGGAACAAGACCCACTATACTAGATTTAGCCAATTCGGGTGCGGATGGGGATTCCCCAATAGA
TTCTACAGATTCGGATTTGGATGCCCCTGCGCATAAACATATGGATAGGGATGCCGATTCAGATG
CGGCTAGAAAGGCTCGTTTGAGTGATTCATAAACCCTCGTCGGGATAAACAAGCAAGGGTTTCAT
CCTCTACTTATGGGAATGTCTTCGATCTGGCTCTTGTTCCCTGTAGGTTTATAGCACGCTAGGCT
AGCGTTGAAAGGTATTCTATCTTTCTCTTTTTGTTGTTCGGCTCGATAGAATTGTTTAGAATCCT
CTCCTAGCTTCCTCTTTCCATAGATATGAAGACTATAAAACGTCGATCAGAGAGGAGGGTTGTTC
TAAGATATAGAAGTAGTTAAGGGCTTGACTAAGTAGTAGATATGGGATTGAGGGGCGCAGGAGTA
GGGTTGTACTCTAGAGGTAATGCTATACTCCATTCTTCCTCCCGG
Found at i:283803 original size:17 final size:17
Alignment explanation
Indices: 283773--283806 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
283763 GAATCACCAC
*
283773 ACGAGAAAGGTCCTTTT
1 ACGAGAAACGTCCTTTT
*
283790 ACGAGAAACTTCCTTTT
1 ACGAGAAACGTCCTTTT
283807 TTCGCTTTCC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.32
Consensus pattern (17 bp):
ACGAGAAACGTCCTTTT
Left flanking sequence: Indices 283273 -- 283772
CCCATTGGAAAGGGCAGTGCAAGAGAAATCATACAAAAATGATCGAATCTTCGGACGCCCCGAAA
AAGATATGAGGTGCTCGGAAATGGTCGAAGTAGTTGAATAGGAGGATCACTATGACTATAGCCCT
TGGTAAGTTTACCAAAGACGAAAATGATTTATTTGATATTATGGATGACTGGTTACGGAGGGACC
GTTTCATTTTTGTAGGCTGGTCCGGTCTATTGCTCTTTCCTTGTGCCTATTTTGCTGTAGGGGGT
TGGTTCACAGGTACAACCTTTGTAACTTCATGGTATACCCATGGATTGGCCAGTTCTTATTTGGA
AGGCTGCAATTTCTTAACAGCCGCAGTTTCTACTCCTGCTAATAGTTTAGCACATTCAAAGTAAG
CAACAACTCTTTTCAAGTATTCTAATAAGAGATATTTCATCAAGCTTACTAGAATATTCGAACCT
CGACAAAATGACACTTTCATCTTATTATAGCTAAAGAATCACCAC
Right flanking sequence: Indices 283807 -- 284306
TTCGCTTTCCATTCGCATGTTACAAATAGTCCTTTTTTTTTGAATATCGTATATAGTGTAGTTAG
TATATATAACGTACTTTTTGACTTTATTTAATTGTTTAAAGAATGAAAGTAATCGTTGATAAAAA
GAACGAGGGGAAGAATCGACGAGGCGAGTGTTCTCGAATAGAAAATCCTGATGATGATGAAAAAA
GCGTGAGGAGAATTCGAGATTCAAATGTTAGAAGGTGCAAAATCAATCGGTGCAGGAGCTGCTAC
AATTGCTTCAGCGGGAGCAGCTATCGGTATTGGAAACGTCCTTAGTTCCTCGATTCATTCCATGG
CGCGAAATCCATCAGCTATCGGTATTGGAAACGTCTTTAGTTCCTCGATTCATTCCATTCTTGGG
CGTGCCCTTGCTTTCTCGATTCATTCCGTGGAACAAAATCCATCGGGAGAAAAAGGAGTGCCGGT
ATCAGAGGTGTTTTCCTATTTTGTCAGTAGCATAGCCTCCTATTA
Found at i:303587 original size:17 final size:17
Alignment explanation
Indices: 303565--303598 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
303555 TGTTCAAGTA
303565 TTCGATATCTCTCTTTT
1 TTCGATATCTCTCTTTT
303582 TTCGATATCTCTCTTTT
1 TTCGATATCTCTCTTTT
303599 CTTGATCCAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.12, C:0.24, G:0.06, T:0.59
Consensus pattern (17 bp):
TTCGATATCTCTCTTTT
Left flanking sequence: Indices 303065 -- 303564
AACAGGCTGCAGCGGCCTTTTTTCTTCCGTTTACAACCGCAGGAAGCCTCTAGCAATTCGAATTC
TATACAGATTATTATCCTTTTCCCGCGAAAATCTTAATATCCAGAAGTAGCTTAATCGGAGGATT
GAGTCACTGCGCCAGCTTCTTTCTCTTGTGTTCATGGCATCGGAGTGGGTAACCCGCCTAAAGGG
GTAAGGTTCTCGCCCGCGAAGCCATCTGTCAATAGGAGCTCTGGTCCTTGCCCGGGGTCATATCA
TATTATAGCGCTACTGATATATATATATAAGTATTAGGAATTCTCCATTAAGTGAAATCTACAGA
TGCATTATTCCTCCTGAGCCTTGGAATGGAATAGCCCTTCTCATCAACAAATCCTTAAATGAAAT
GCTCCAAACGAAGAAGCAGACGAGCGAAGCGAAGGAGCGAAACGGTCAACGGTCAGGCGCCGAAG
AACTACACCTTAATGAAGTGAGTGAATGCGATAGTTGTTCAAGTA
Right flanking sequence: Indices 303599 -- 304098
CTTGATCCAGCAAGGAATGCTTTGAGCTAAACTACCTCTTAGAATGACTTCCGCTGCGAAACTTA
CTACTTCGGTTAGCTTTGCTTTCGCCGTTCCATCTAATGGGTACCTCTTCCTGAGCGAGAGAGTG
CTTTAATGTGTTATGGCGGTAAAAGTGTTCAGTTCATTCTGCTATCCTACTCTAGTCCCATTCAA
TGTCAACCAGTCCAGTCCCTGTGACTTGCTTTCCTTTCTTGGAATGAGTTACTCTAGGTCTACAT
ATATTATTTCAACAACTGAAAAAAACAGGCTCAGCAAAAATCATAAGAGAACAACGGCCATAGAA
AAAAAAGGGAGCAGGCGAGAGGCACAAAAGGGATTGAACGGAAAGGTCAGTAACCCTAAGTGGCA
ATGTTGGCTCGGTAGAGAGTCAATTACCTCTGTGCTTCGATCTCGTTCTCCGATTGAGCTTTAGC
CCGAGTAGATTGCTACCCAGGACGTATGTCGGGAATCCAGGTGAT
Found at i:313765 original size:14 final size:14
Alignment explanation
Indices: 313746--313780 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
313736 GGTGGTCTCG
*
313746 TATCATATAAATAA
1 TATCATATAAAGAA
313760 TATCATATAAAGAA
1 TATCATATAAAGAA
313774 TATCATA
1 TATCATA
313781 GGCCCGTCCT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.54, C:0.09, G:0.03, T:0.34
Consensus pattern (14 bp):
TATCATATAAAGAA
Left flanking sequence: Indices 313246 -- 313745
TCGCTAGGAAAGAAAGTCTAGCCATACCGAGAAGCCCCATCGGAGGATAGAACTAGAGTACAGCT
CGGGATAGCCGGGCCTGAGGCATAAGTCAATCTACGGGGAGTTCTCATTACAGGGGAGGTGATAC
CTAGATAGAGAAGAGGAAGAGGACTCACTCCATTTATCTTTATGTCTGGCCCCAGCTTTAAGAAT
GATTTGGGATCATTCACGGGGGAGTTGTTAATAGAGAGTTCCTTATATATAAGCAAGTAAACTAC
CTTTGGTTCGTGGTTTGCCTTGAGCACGAACTCGGTTCAGAGGAAGACAAGCAAAGACGAGACAG
AGAGTGATCGTAAGTATTCTCTGTTACCCCAGTTCTCAATTATTTCGTAGAAGCGGGCATTGAGA
CCAGGAAGGTGGGGCTTAGTAGAGGTTTCTAGTGGATGAGGTTTTTGCTATTGAATTAAGAACCG
CTGCTACAGTTGGAGTTGACGGTCCTTCTATCAATGGTGGTCTCG
Right flanking sequence: Indices 313781 -- 314280
GGCCCGTCCTCCCTTTCCTCTTGCTTTAGGTGAATTACCGGTGCTTGATGCAATAACCGGTGTGA
CAGTAGGAACTAAACTCTTGGTCTTATATCAGTTGCCGCGGTTGTCGGACTCGAAATTGAATCAC
TAACCACTGTGAGAGTCACCGGTGTAAGATAGAAGACTGCTATAGAATCAGAATAAGCTGTTGTG
CACGAATAAGCTCTTTTCAGGTCTAGAAGTAAGAACTCTTGAGTAAGCCGATTACCTTCTGACTT
TCCTCTTGATGACGAAAAAGACGCTGTTTTATAAAGTGGTCCGCTTTCAATTGACGTCTAGGAAG
GGAAATCAACTTGCAACCAATTTTACGGGGAAAAGGCTCCAATGTCACCATTGAAGTCTAACTTA
GGGGGGAAATCGGATTGCAAGCAAAAATCCCAAGAAAATGAAAGATTACTCAGATCAGGGGGAAG
GGGGTGCTATAGCCCTTGTTCAAGAATGGCTTTTGTTCAATCAGA
Found at i:316014 original size:31 final size:31
Alignment explanation
Indices: 315971--316030 Score: 111
Period size: 31 Copynumber: 1.9 Consensus size: 31
315961 AGTCTCGTTC
315971 AAGCAACTTTCCTGCTAAGGGAAGGCGCGAA
1 AAGCAACTTTCCTGCTAAGGGAAGGCGCGAA
*
316002 AAGCCACTTTCCTGCTAAGGGAAGGCGCG
1 AAGCAACTTTCCTGCTAAGGGAAGGCGCG
316031 TGGAACCGGG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.28, C:0.25, G:0.30, T:0.17
Consensus pattern (31 bp):
AAGCAACTTTCCTGCTAAGGGAAGGCGCGAA
Left flanking sequence: Indices 315471 -- 315970
AGGAAAGGAGTGGAAGGCCGTTTGAACTCGCTTTTACTTACAGGAGAGGAGCGGAAAGAAGAACA
GCGTAAGCGAAGCAACTTTCCAGTTAAGGAGAACAGCGAAGCAACGAGCGAGACAGACTTGTTGG
AAGGAGAGTCGTTCCGTTCCAAGCTACTCGCCTTAGAACAGCTACGCCACTTTCCTGCGCTGAAA
AGCCGCTTTCAGGAGTGAAGCAGCTCGACCGTAGGGAGAGGAGTGGAGGCTACTTGCTACATGAG
GGAGGGTTAAGCCGCGTTAAATGCCCCGGAAATGGCCTTAGGGGAAGAGAGGAGCGTTTAGACAC
TTGACTGTAAGGAAAGGAGCAAAGCTGCTCGAACGAATGTGAGAGGAGTGGAAGAAGAACAGCGT
AGCCACTCGACTTTAAAGAAGGAGAGGGGCGTAGCAGTTCGAATTGAACTATTGAATTATAACAA
GGCATGGAACGCCCTTTCTTTTATTCCGCGTTTATAGTCTCGTTC
Right flanking sequence: Indices 316031 -- 316530
TGGAACCGGGGAGAAGGATTATTGAAACCAGTTCAAATGGAGGCGGAAAATCTGTTGATAAATGA
ATTCCAATTTGTTGACTATTACTTAGAAAATCTTGCTCTATAATCTGGTTTGATCTTGTAGTCCA
AATAATCCCGCACCACCAGTGGCATCGTAGATAGAAGACCTATGCATCAGTCTACTGTCATGATC
ACATATTAGCTCGATTTTCTTGTTTGCTTCGTTCTTCTCTTTCTAACCAAACAATTACTAGTACA
AGAGTCAAAAGAGGAAAGGAGTGAAAACCACTTTCCAGTTAAGGGAAGGTTAAGCAACTCTCTTG
ACTATAAGGTTTGAGAGGCGTGAAAGCTGCTCGCTTTCCTATAAGTAAGGAGAGGAGTAAAAAGT
TACGCCACGAGACTATAAGGAGTTCCAAGCCGCTTTCAGGGGTGGAAAGCTTTAGAGACTCGACT
CGAATGCCCTCTTAGCAATAGCATCCGTAACCGCAGCTATTGAGT
Found at i:317896 original size:71 final size:70
Alignment explanation
Indices: 317780--317912 Score: 232
Period size: 71 Copynumber: 1.9 Consensus size: 70
317770 CAAATTCTAT
317780 TTTGACAAGCACCTGTAGTACGGAAAATGCTTTCTGTCATTTTGCA-TATAGGTGGGACATCCGT
1 TTTGACAAGCACCTGTAGTACGGAAAATGCTTTCTGTCATTTTGCACTATA--TGGGACATCCGT
317844 TTTCTTG
64 TTTCTTG
317851 TTTGACAAGCACCTGTAGTACGGAAAATGCTTTCTGTCATTTTGCACCTATATGGGACATCC
1 TTTGACAAGCACCTGTAGTACGGAAAATGCTTTCTGTCATTTTGCA-CTATATGGGACATCC
317913 AAATTCTATT
Statistics
Matches: 60, Mismatches: 0, Indels: 4
0.94 0.00 0.06
Matches are distributed among these distances:
71 56 0.93
73 4 0.07
ACGTcount: A:0.24, C:0.20, G:0.21, T:0.35
Consensus pattern (70 bp):
TTTGACAAGCACCTGTAGTACGGAAAATGCTTTCTGTCATTTTGCACTATATGGGACATCCGTTT
TCTTG
Left flanking sequence: Indices 317280 -- 317779
AAAATAGCTATTAAACGATGTCTTTGGTTTACTAGAGACATCAACATATTGTTTTAGCTCGGTGG
AAACAAAATCCTTTTCCTCAGGATCCAGAAATAGAGAACGAAATAACTAGAAAGGTTGTTAGAAT
CCCCCTCTTCTAGAAGGATCATCTACAAAGCTATTCGTTTTATCTGTATTCAGACCAAAAGCTGA
CATAGATGTTATGGGTAGAATTCTTTTTTCTTCTCATTACCAATCCCGCATTAGAGTTCGGGAAG
GGGGCTTAAAAGCATCGGAAATGGGGTGTTAGCTTTCCTTATAGGAGAGGAGTGGAATAAAGGAA
AGGCGCGAAAAGCAACTTGACTATAAACTTAGAACAGCTACGCCACTCAACTAGAAACTCGAATT
CCAGTTTGAACTCTTATATAAACTATATAGAAGAACTGCTACTAATAGTTCTTTAATTAGAACTG
CTACGCTTATAATAGAATAGTTCAATTCGAATAGGCAAATTCTAT
Right flanking sequence: Indices 317913 -- 318412
AAATTCTATTGCGCGGTAGAAAGCTCACCCGTTGCTTGTTGCTAGTGCGCTCATCCGCTGCTTGG
TCCCGTTGCTTGTTCCATTGCAGCTTTCAACTCCTTTCTGTCCCATATAGGGGGAAAAGTAGACA
ACCCTATTTTCACTCTAAGAAAGCAATTCTAAATCACATTTTGATGTCCCACCTATATGCAAAAT
AAGACAACAACAAGGGGAAGAGGTAGTTAACACAAACAAGTAGCTGCAGTAACTCATCTCTTTAA
GAAGCTTAGCTGCAGCCGTTACACTGCTCTAATAACTCAGCTATAAGGAGAAGGAGAAGGAGAGG
AGCGAAGCCATAAAAAGGAGAGGCGCGTAGCTGTTCTAAGAAAACTCTTACTTACAGGATAGTTG
ACCGCTCGCTTTGCCTGATAAGTGGACAAGGGATCTTTGCTTTAGTTGCCTTAGCTAGCCTATAT
TGAACTGAACCCTGGACGGATTGGTTCCAGTTAGGCGAATTGGTC
Found at i:327933 original size:42 final size:42
Alignment explanation
Indices: 327885--327970 Score: 163
Period size: 42 Copynumber: 2.0 Consensus size: 42
327875 CGTGACTAAC
327885 GCGCAACGGCTTTCACGCTAGTGCGCTCATCCGCTGCTTGTT
1 GCGCAACGGCTTTCACGCTAGTGCGCTCATCCGCTGCTTGTT
*
327927 GCGCAACGGCTTTCGCGCTAGTGCGCTCATCCGCTGCTTGTT
1 GCGCAACGGCTTTCACGCTAGTGCGCTCATCCGCTGCTTGTT
327969 GC
1 GC
327971 ATCGGAACAA
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.10, C:0.34, G:0.28, T:0.28
Consensus pattern (42 bp):
GCGCAACGGCTTTCACGCTAGTGCGCTCATCCGCTGCTTGTT
Left flanking sequence: Indices 327385 -- 327884
CCATTCTTTATAGCCGTTACGAAAGCTCCCGAAGAGAAAGAGGTCTTTGCTGCTTGACTGCGTGA
ACCAGGTCCAGGTCTTGCATTTGGCATTCCCGCTGTTGACGTCCCATCGAGTTAGCTAGTGTTGG
GTGAAAGGGATTTAGGAATGAATAGCAGGCAAAGTCCTTGCTAGGAATTCCGGGTAACTTTCTGT
ATTCCTTAAGGTTAGAGGTGAAGCTTACTTCCTGCGGTAGCCCCTTGGACCTTAGCCTCTTAAGG
GTTGGGTTCTAGTGGCGGGCTCTTGGGTCGTCCGGACCCATATCTGGTAAAAGTGGTGGCCTGGT
TGTCCCCACACCCCCTTATCATGCGTGTCTGTGGGAGCAGTTTGTGCTAGCGTTTTGGCGCTCGC
CTTATGGTTCTCAGTCCTCTTTCGCCGAGATGCCTTTTAAAAAGATTTTTTCCCGCATCGGAACA
AGCAAGAAAACGGCTGCAGCAAGAAAACGGATGCGCGTGACTAAC
Right flanking sequence: Indices 327971 -- 328470
ATCGGAACAAGACCCACTATACTAGATTTAGCCAATTCGGGTGCGGATGGGGATTCCCCAATAGA
TTCTACAGATTCGGATTTGGATGCCCCTGCGCATAAACATATGGATAGGGATGCCGATTCAGATG
CGGCTAGAAAGGCTCGTTTGAGTGATTCATAAACCCTCGTCGGGATAAACAAGCAAGGGTTTCAT
CCTCTACTTATGGGAATGTCTTCGATCTGGCTCTTGTTCCCTGTAGGTTTATAGCACGCTAGGCT
AGCGTTGAAAGGTATTCTATCTTTCTCTTTTTGTTGTTCGGCTCGATAGAATTGTTTAGAATCCT
CTCCTAGCTTCCTCTTTCCATAGATATGAAGACTATAAAACGTCGATCAGAGAGGAGGGTTGTTC
TAAGATATAGAAGTAGTTAAGGGCTTGACTAAGTAGTAGATATGGGATTGAGGGGCGCAGGAGTA
GGGTTGTACTCTAGAGGTAATGCTATACTCCATTCTTCCTCCCGG
Found at i:333740 original size:30 final size:31
Alignment explanation
Indices: 333704--333761 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 31
333694 AGAGGAGCGA
*
333704 AAGCCACTTGACTG-CAAGGAAAGGAGTTTC
1 AAGCCACTCGACTGTCAAGGAAAGGAGTTTC
* *
333734 AAGCCACTCGACTGTTAAGGAGAGGAGT
1 AAGCCACTCGACTGTCAAGGAAAGGAGT
333762 GTTGACCACT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
30 13 0.54
31 11 0.46
ACGTcount: A:0.33, C:0.19, G:0.29, T:0.19
Consensus pattern (31 bp):
AAGCCACTCGACTGTCAAGGAAAGGAGTTTC
Left flanking sequence: Indices 333204 -- 333703
GCTTCTGCTAAAGGAAGTGGTGATCCCTAGCTTGAGACTCAAACTCCGGAAGCCGACCTGCCAAC
AGACATTGTGGGAGAATACTCTTCACCATCATCAGAAAATGTTGCTTAGCGGCAACCTTGAAATA
GGGTAAAGTTTGACTGCATCAAGCTCTAAAGCCGGGTATTCTGTACCAGCTCGGCTAGATCAAAG
ACTGCCGTAAGTTGCATCTTGAGTCTTAAGAATTGGGTCCCTTAGCCCCTGGATTGGTGCGCAAG
CAAAAGAAGAACAAAAAAGAGGGGCCTCTGGCTTATGTTGAAGCATATAAACGACATACTAAGCA
GAAGCGCGTAGACTCAAAAGAAGGGAGAGGGGCGAAAAGCCACTCGACTATAAGGAGAGGAGCTT
TTAAGCCGCTTTCCTGTAAGGAAAGGCGTGGAAGGCCATTTGAGCTTGACTTTATTATAAAAGGA
AAGGAGCGAAGCAACTCTCTTGACTATAAGGAAAGAGAGGAGCGA
Right flanking sequence: Indices 333762 -- 334261
GTTGACCACTCGACTTGTTGGAAGGAGAGGAGCTGAAAAGCCACTCGACTATAAGGAGAGGCGTG
AAAAGCCACTTGCACTTGCTTGATTATTTGGAGAGGGGCTTTTTCGAAAGGCGTCAAAGTTTGAC
GTATATAGATATAGTGAGTGTGCGTGCGGGGTGTAGGTATACCACTTACGAGAAAGAACCCCAAG
TCAGTAAAGTAGTTAACCAAACACAAGTAACAAGTTCGTCAGTCCTTCCTCCGATGCCTCCCGTT
CATTCTTCTTCATTTCATCATTTTGTTGTGTTGTTCTGTTCATAGGTCCCAAGCCCTTCTTAGAA
AGCCCTCTTCCCTCTCCTTAAGTTAAGAAAAAAAGAATGCTGCTTGATTGAACGAACATTGGTTG
AACCTTTCTAACTGACACCCCAGTCATAATGCCACCCACGTCTTTTTTTCTTTTGAACAAGCCTT
CTAAATCCAAATTTTGTGTCCTTTTATTTGAGTTCATAATAATAA
Found at i:333760 original size:31 final size:30
Alignment explanation
Indices: 333704--333822 Score: 91
Period size: 31 Copynumber: 3.8 Consensus size: 30
333694 AGAGGAGCGA
* * *
333704 AAGCCACTTGACTG-CAAGGAAAGGAGTTT
1 AAGCCACTCGACTGTTAAGGAGAGGAGTTT
333733 CAAGCCACTCGACTGTTAAGGAGAGGAGTGTT
1 -AAGCCACTCGACTGTTAAGGAGAGGAGT-TT
* **
333765 GA-CCACTCGACTTGTTGGAAGGAGAGGAGCTGAA
1 AAGCCACTCGAC-TGTT--AAGGAGAGGAG-T-TT
*
333799 AAGCCACTCGACT-ATAAGGAGAGG
1 AAGCCACTCGACTGTTAAGGAGAGG
333823 CGTGAAAAGC
Statistics
Matches: 74, Mismatches: 8, Indels: 13
0.78 0.08 0.14
Matches are distributed among these distances:
30 22 0.30
31 25 0.34
32 2 0.03
33 12 0.16
34 4 0.05
35 9 0.12
ACGTcount: A:0.32, C:0.18, G:0.31, T:0.18
Consensus pattern (30 bp):
AAGCCACTCGACTGTTAAGGAGAGGAGTTT
Left flanking sequence: Indices 333204 -- 333703
GCTTCTGCTAAAGGAAGTGGTGATCCCTAGCTTGAGACTCAAACTCCGGAAGCCGACCTGCCAAC
AGACATTGTGGGAGAATACTCTTCACCATCATCAGAAAATGTTGCTTAGCGGCAACCTTGAAATA
GGGTAAAGTTTGACTGCATCAAGCTCTAAAGCCGGGTATTCTGTACCAGCTCGGCTAGATCAAAG
ACTGCCGTAAGTTGCATCTTGAGTCTTAAGAATTGGGTCCCTTAGCCCCTGGATTGGTGCGCAAG
CAAAAGAAGAACAAAAAAGAGGGGCCTCTGGCTTATGTTGAAGCATATAAACGACATACTAAGCA
GAAGCGCGTAGACTCAAAAGAAGGGAGAGGGGCGAAAAGCCACTCGACTATAAGGAGAGGAGCTT
TTAAGCCGCTTTCCTGTAAGGAAAGGCGTGGAAGGCCATTTGAGCTTGACTTTATTATAAAAGGA
AAGGAGCGAAGCAACTCTCTTGACTATAAGGAAAGAGAGGAGCGA
Right flanking sequence: Indices 333823 -- 334322
CGTGAAAAGCCACTTGCACTTGCTTGATTATTTGGAGAGGGGCTTTTTCGAAAGGCGTCAAAGTT
TGACGTATATAGATATAGTGAGTGTGCGTGCGGGGTGTAGGTATACCACTTACGAGAAAGAACCC
CAAGTCAGTAAAGTAGTTAACCAAACACAAGTAACAAGTTCGTCAGTCCTTCCTCCGATGCCTCC
CGTTCATTCTTCTTCATTTCATCATTTTGTTGTGTTGTTCTGTTCATAGGTCCCAAGCCCTTCTT
AGAAAGCCCTCTTCCCTCTCCTTAAGTTAAGAAAAAAAGAATGCTGCTTGATTGAACGAACATTG
GTTGAACCTTTCTAACTGACACCCCAGTCATAATGCCACCCACGTCTTTTTTTCTTTTGAACAAG
CCTTCTAAATCCAAATTTTGTGTCCTTTTATTTGAGTTCATAATAATAATAACAGGCGGGTTTCA
TTAATGAAAAGAAAAGCGGAGGCCCGCCATCTGCTAGCATTGTGG
Found at i:342542 original size:42 final size:42
Alignment explanation
Indices: 342478--342610 Score: 239
Period size: 42 Copynumber: 3.2 Consensus size: 42
342468 CAACGCATTT
* *
342478 GTTGGGCAACAAGCAACGGATGAGCGCACTAGCGTGAAAGCC
1 GTTGCGCAACAAGCAGCGGATGAGCGCACTAGCGTGAAAGCC
*
342520 GTTGCGCAACAAGCAGCGGATGAGCGCACTAGCGCGAAAGCC
1 GTTGCGCAACAAGCAGCGGATGAGCGCACTAGCGTGAAAGCC
342562 GTTGCGCAACAAGCAGCGGATGAGCGCACTAGCGTGAAAGCC
1 GTTGCGCAACAAGCAGCGGATGAGCGCACTAGCGTGAAAGCC
342604 GTTGCGC
1 GTTGCGC
342611 GTTAGTCACG
Statistics
Matches: 87, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 87 1.00
ACGTcount: A:0.28, C:0.26, G:0.34, T:0.12
Consensus pattern (42 bp):
GTTGCGCAACAAGCAGCGGATGAGCGCACTAGCGTGAAAGCC
Left flanking sequence: Indices 341978 -- 342477
GCTCGAAAATCTCTCTTTCGCCTCTCCTCCCTGTCTCAATTCTGATTGATTAGCTTATTCCTTCG
CGCAAGCTTCTGATTGATTAGCTAACGACCCCCTTGTTGTGTTGCATTTTGTGATCTTCCGCTTC
AGTCTGCGTTTTTCGGATAGCCGGGACCCGATGTTGATTTCCGATTGAAATGTCAGCTCCAGGTT
TGGGGCGGCCCATCTGATTAGTTCAGCTATCACTGCTGGAAACCCCAGCGGTTGTTCGGCTGCGT
ACTCCCCGTCTGCCTATCTCACACTCCCAAAGCAAATTTGGATTTCTGCTTTCATTTTCCTTTCC
TGCATCTTTCTTTCTATCCATAGGTCGGCTTCGCGCAGATAGATCTTTGCCGGGGGAGATTGGTG
CCCCTTGAGGTATGCCCTTCCGGTGGGTTCTTCCTTTATCTGTCTTTTCCATCCAGTGCCCGCAC
TGCGTCAGAAAGTCTTCGTCTTCGATCTCTCTTCGCAACGCATTT
Right flanking sequence: Indices 342611 -- 343110
GTTAGTCACGCGCATCCGTTTTCTTGCTGCATCCGTTTTCTTGCTGTAACGCGCATCCGTTTTCT
TGCTCTTTCTCTCGACATCTTTCTTTTATTGTTGTCATTGATCTCATATCTATAAGCAGGGGGGT
CTGCGTTCACTATTAAGCCTACGCCCGTCCATTCCTTTCAAGCTTGATCCTTCCCTTAGACTCGT
TACCTTGTTCGACTGAACTCGTTGGTTCCGCGCTCTATTTGGTCGTAACCCGGTTCGAGAACCTT
CTCTCATAGATTCCCTTCACCAAGTCATCGCCAGCAATCAGCTCTTATCCCTTGGTGTCAAAGGG
CGAGTTCCTTTCTTGTCTTGCCCAAAAACTTTCTTGATTCTCATTGGAGAAAGACTCTCCCGCGG
CAAGGTTTTACACATAGGGCCAGCTGCTTTCTTTATCTCGCTTGCCCTTAGTCCGTCTAGCGCCT
TTCGGTTGGGGTCCGCCCTGGGGGTTAGGTTAGACCGCTTGGGTT
Found at i:342642 original size:17 final size:17
Alignment explanation
Indices: 342622--342656 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
342612 TTAGTCACGC
342622 GCATCCGTTTTCTTGCT
1 GCATCCGTTTTCTTGCT
342639 GCATCCGTTTTCTTGCT
1 GCATCCGTTTTCTTGCT
342656 G
1 G
342657 TAACGCGCAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.06, C:0.29, G:0.20, T:0.46
Consensus pattern (17 bp):
GCATCCGTTTTCTTGCT
Left flanking sequence: Indices 342122 -- 342621
GGATAGCCGGGACCCGATGTTGATTTCCGATTGAAATGTCAGCTCCAGGTTTGGGGCGGCCCATC
TGATTAGTTCAGCTATCACTGCTGGAAACCCCAGCGGTTGTTCGGCTGCGTACTCCCCGTCTGCC
TATCTCACACTCCCAAAGCAAATTTGGATTTCTGCTTTCATTTTCCTTTCCTGCATCTTTCTTTC
TATCCATAGGTCGGCTTCGCGCAGATAGATCTTTGCCGGGGGAGATTGGTGCCCCTTGAGGTATG
CCCTTCCGGTGGGTTCTTCCTTTATCTGTCTTTTCCATCCAGTGCCCGCACTGCGTCAGAAAGTC
TTCGTCTTCGATCTCTCTTCGCAACGCATTTGTTGGGCAACAAGCAACGGATGAGCGCACTAGCG
TGAAAGCCGTTGCGCAACAAGCAGCGGATGAGCGCACTAGCGCGAAAGCCGTTGCGCAACAAGCA
GCGGATGAGCGCACTAGCGTGAAAGCCGTTGCGCGTTAGTCACGC
Right flanking sequence: Indices 342657 -- 343156
TAACGCGCATCCGTTTTCTTGCTCTTTCTCTCGACATCTTTCTTTTATTGTTGTCATTGATCTCA
TATCTATAAGCAGGGGGGTCTGCGTTCACTATTAAGCCTACGCCCGTCCATTCCTTTCAAGCTTG
ATCCTTCCCTTAGACTCGTTACCTTGTTCGACTGAACTCGTTGGTTCCGCGCTCTATTTGGTCGT
AACCCGGTTCGAGAACCTTCTCTCATAGATTCCCTTCACCAAGTCATCGCCAGCAATCAGCTCTT
ATCCCTTGGTGTCAAAGGGCGAGTTCCTTTCTTGTCTTGCCCAAAAACTTTCTTGATTCTCATTG
GAGAAAGACTCTCCCGCGGCAAGGTTTTACACATAGGGCCAGCTGCTTTCTTTATCTCGCTTGCC
CTTAGTCCGTCTAGCGCCTTTCGGTTGGGGTCCGCCCTGGGGGTTAGGTTAGACCGCTTGGGTTT
TTTTTCGTCTATCGAAGGCAGTCAACGTGTCAGCCATTCTTCCCC
Found at i:361717 original size:42 final size:42
Alignment explanation
Indices: 361670--361791 Score: 182
Period size: 37 Copynumber: 3.0 Consensus size: 42
361660 TGTTTGATCC
361670 CAACAAGCAGCGGATGAGCGCACTAGCGCGAAAGCCGTTGCG
1 CAACAAGCAGCGGATGAGCGCACTAGCGCGAAAGCCGTTGCG
* *
361712 CAACAAGCA----ACG-GCTCACTAGCGCGAAAGCCGTTGCG
1 CAACAAGCAGCGGATGAGCGCACTAGCGCGAAAGCCGTTGCG
*
361749 CAACAAGCAGCGGATGAGCGCACTAGCGTGAAAGCCGTTGCG
1 CAACAAGCAGCGGATGAGCGCACTAGCGCGAAAGCCGTTGCG
361791 C
1 C
361792 GTTAGTCACG
Statistics
Matches: 70, Mismatches: 5, Indels: 10
0.82 0.06 0.12
Matches are distributed among these distances:
37 33 0.47
38 2 0.03
41 2 0.03
42 33 0.47
ACGTcount: A:0.29, C:0.30, G:0.31, T:0.11
Consensus pattern (42 bp):
CAACAAGCAGCGGATGAGCGCACTAGCGCGAAAGCCGTTGCG
Left flanking sequence: Indices 361170 -- 361669
AGAGAAAGTCCAACTTAGGCCTCAGGCTTGAGAAGGGTCATCGTTCCCGGCTGTCCCATGTTTGT
TGTATTTCTGCAGGGGGAGCCCAACCCCGCTAACGCCGTGTTTTAGGGTTACAACGAGCTGGCCT
CTGAGAGACTAAGTTGAGAATAGCGCTCGCTATCTTTCCAGCCATAGGCATATCTGCTTACTTAT
CTAGGATCAAGGGCTCTTTACTAATAGAATATCATATGGGATACTTCCTTGAAGAAAGCCGTACT
CCCATCAGCTTTCAAGTAGATAAAGAAGTGTTGGCTAGTGACATCAGCTATCGGCTATTGGCCTT
TGCTTTCAGCTCCTTTCCTTATATAATAAAGTCAAGCGGCCTCCGCGCCTCTCTTTCCTTATAGT
CAAGAGAGTTGCTTTCAGCTCCTTTCTTAGCAGGTTATAGTCAAGGAAGTGGCTTCCACTCCTCT
CCTTACAGTCGAGCAGCTAAAGCTCCTCCTCAATATGTTTGATCC
Right flanking sequence: Indices 361792 -- 362291
GTTAGTCACGCGCATCCGTTTTCTTGCTGCATCCATTTTCTTGCTGTCACGCGCATACGTTTTCT
TGCTCCTTCCTCTTCGTCAATGATTATGGGTCGCTCCTGCCCTTTACCCAAAGAGTACAAGAATG
GCAATCCACCTATTGGTGTGCTGCTGCCCTCAACCGACCTGATCGTCCCAATCCGGTTGTCCTCA
CTAAGAACAGATCCACAATCTCTTATCTAATGAATATGAAATTGCTATATAATATTCCTTTGCCT
AGCTGCCCATTGCTAGAACTTCCAGCGCGTTGGTGGTTGGTGTGGTAAGGCAAGCAACTCCTCTT
TCCGAAGAAGAGTGCCTGCCCGAGCTATCTTAAAGTAAAGCTCTCTAGGTTAGCTATAGGTAAAG
TTCTCCCAGAGCCGGAGACACAGGCCGCTACTCCTTCAGAAAGCGGGAATCCGCAAGGAAGGATA
GGACACAGAATAAAGACCTAAAGTAGTTCGTCGGATGAGACCGAG
Found at i:361823 original size:17 final size:17
Alignment explanation
Indices: 361803--361837 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
361793 TTAGTCACGC
*
361803 GCATCCGTTTTCTTGCT
1 GCATCCATTTTCTTGCT
361820 GCATCCATTTTCTTGCT
1 GCATCCATTTTCTTGCT
361837 G
1 G
361838 TCACGCGCAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.09, C:0.29, G:0.17, T:0.46
Consensus pattern (17 bp):
GCATCCATTTTCTTGCT
Left flanking sequence: Indices 361303 -- 361802
AGAGACTAAGTTGAGAATAGCGCTCGCTATCTTTCCAGCCATAGGCATATCTGCTTACTTATCTA
GGATCAAGGGCTCTTTACTAATAGAATATCATATGGGATACTTCCTTGAAGAAAGCCGTACTCCC
ATCAGCTTTCAAGTAGATAAAGAAGTGTTGGCTAGTGACATCAGCTATCGGCTATTGGCCTTTGC
TTTCAGCTCCTTTCCTTATATAATAAAGTCAAGCGGCCTCCGCGCCTCTCTTTCCTTATAGTCAA
GAGAGTTGCTTTCAGCTCCTTTCTTAGCAGGTTATAGTCAAGGAAGTGGCTTCCACTCCTCTCCT
TACAGTCGAGCAGCTAAAGCTCCTCCTCAATATGTTTGATCCCAACAAGCAGCGGATGAGCGCAC
TAGCGCGAAAGCCGTTGCGCAACAAGCAACGGCTCACTAGCGCGAAAGCCGTTGCGCAACAAGCA
GCGGATGAGCGCACTAGCGTGAAAGCCGTTGCGCGTTAGTCACGC
Right flanking sequence: Indices 361838 -- 362337
TCACGCGCATACGTTTTCTTGCTCCTTCCTCTTCGTCAATGATTATGGGTCGCTCCTGCCCTTTA
CCCAAAGAGTACAAGAATGGCAATCCACCTATTGGTGTGCTGCTGCCCTCAACCGACCTGATCGT
CCCAATCCGGTTGTCCTCACTAAGAACAGATCCACAATCTCTTATCTAATGAATATGAAATTGCT
ATATAATATTCCTTTGCCTAGCTGCCCATTGCTAGAACTTCCAGCGCGTTGGTGGTTGGTGTGGT
AAGGCAAGCAACTCCTCTTTCCGAAGAAGAGTGCCTGCCCGAGCTATCTTAAAGTAAAGCTCTCT
AGGTTAGCTATAGGTAAAGTTCTCCCAGAGCCGGAGACACAGGCCGCTACTCCTTCAGAAAGCGG
GAATCCGCAAGGAAGGATAGGACACAGAATAAAGACCTAAAGTAGTTCGTCGGATGAGACCGAGA
ACCGAAAGATGTCTATCAAAGAGCGAGAGGGACTGACTAGACGGC
Found at i:366991 original size:38 final size:38
Alignment explanation
Indices: 366949--367025 Score: 95
Period size: 38 Copynumber: 2.0 Consensus size: 38
366939 ACTTGACTGC
366949 AAGGAAAGGAGT-TTCAAGCCACTCG-CTTGATTGTAAGG
1 AAGGAAAGGAGTGTT-AA-CCACTCGACTTGATTGTAAGG
* * *
366987 AAGGAGAGGAGTGTTGACCACTCGACTTTATTGTAAGG
1 AAGGAAAGGAGTGTTAACCACTCGACTTGATTGTAAGG
367025 A
1 A
367026 GAGGCGTGAA
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
37 7 0.21
38 25 0.74
39 2 0.06
ACGTcount: A:0.31, C:0.14, G:0.30, T:0.25
Consensus pattern (38 bp):
AAGGAAAGGAGTGTTAACCACTCGACTTGATTGTAAGG
Left flanking sequence: Indices 366449 -- 366948
AAAGATTTGATTGAATGAATGCCACCTTGGTAGTTTTCAAACAAATCCAATGTTGGGCCAAGCCT
TGCCAGCCGGTAATAGCCGAAGGAAAAAAAGGGGGAGATAGGGAAGAGGAGATTAAGGATAGTCA
CTCCACTCCATAGATAGTGCACACAGATTCTTCTTTCATTTTCCATTCCTTGAACTGGCTACTAC
CGCGCAACGTGCCCTTGCTTGGTGGGTCGGAAACGCGGGCTGCTAGTGGGGCTGTGCCCATTCTC
CCTCTTCTTCCGCTTTACAACCGGAATAAGGAACCTTAGAATTCACCCTACCTGTCGATGAAAAA
ATGGGATTTGAGAGGGGCATTCAGCCACTCGACTATAAGGAGAGGAGCTTTTAAGCCGCTTTCCT
GTAAGGAAAGGCGTGGAAGGCCATTTGAGCTTGACTTTATTATAAAAGGAAAGGAGCGAAGCAAC
TCTCTTGACTATAAGGAAAGAGAGGAGCGAAAGCCACTTGACTGC
Right flanking sequence: Indices 367026 -- 367525
GAGGCGTGAAAAGCCATTTTCACTCTCTTGACTATAAGGTTTGAGAGGAGTGGAAAGCCATTTGA
ACTTGCTTGACTATAAATTGGAGAGGACCACCAGCTAGCGGATCAGAAAGATTTGTATGGAATGT
CCTACTCCTGCCTGAGCTTTCCGATCAACCAATCCCCTATTTCAGGGACATCTGTGTTAGGTAGG
CCCAGGGATCACTGATTAGTCGAATGAGCCCATCTCTCTGGCCTATCATTTGTTGGTCGATCCGG
CTGGCGGCTCCTGCATCTCCTGCCTCTCTATGGGGGCCCCTTTTTTATACTAGTTTGCTGCTAGG
AGTCCCGTCAGTCGAATTAATAATCAATAGAAGTCCCAATAGAAGTTGACTGACCTGGCTCTTCA
ATCGACGATCTACTGCTCCCTCTTAATAGCAGATGCCCATGCTTTGATTCGAAAGCCCTAGCCAG
TGATGAATCCCCAGGTATTCCGTGTCTGGTTCGATAGGACCAGGA
Found at i:377611 original size:15 final size:15
Alignment explanation
Indices: 377591--377622 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
377581 GTCTATGTTG
377591 GCTTAATACGATGAA
1 GCTTAATACGATGAA
377606 GCTTAATACGATGAA
1 GCTTAATACGATGAA
377621 GC
1 GC
377623 GGAAGTAAAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.38, C:0.16, G:0.22, T:0.25
Consensus pattern (15 bp):
GCTTAATACGATGAA
Left flanking sequence: Indices 377091 -- 377590
ATGTTGGAAAGGGAAGCCCCCATAATATAAGCACTCTTTCAGTCAAGTAATGCCTTTAGAGCCTA
TAGTATAGCTGAGTAGCTAAGAGCTTCTGGTAATTTAAAAACTGAGGAATCGACTTGTTTTGCGT
TAATGGGGCTTTGAGGGACGTCTTCTCTTTCCCTTATCAAGCAAGTCACACCTAATCGCCCTTGA
TGCCATCTTGATAACTGGACTGAATGTCTCATCATAGTCTATACCCTATTGCTGGTTGTAGCCTT
TGGCTACCACGCGAGCCTTGTAGCGATCAATAGTCCCATCAGACTTTTACTTTCTCTTGTATAAC
CACTTGCGAGCCGATACACAAATTTCGAAATCCAAATTTCGCAGGAAAATGGGATGAAGCCCGCC
AGAAAGCTTTTGACAAAATAAAGGAATACCTCCATTCTAGTGCCTACAACGCCAGGAAGCCTTTA
TTACTATACCTATCAGTCACTGAAACCACTATGGGGTCTATGTTG
Right flanking sequence: Indices 377623 -- 378122
GGAAGTAAAGGGCCATATACTACCAACGTAAGAAAATGACTGACTACAAGACCAGGTATACCAAT
TTGGAGAAAACCTGCTTGGCTTTGGTTTGGGTAAGGCGGAAATTGAGGCATTACATGCTGTCTTA
CCCAGTACATTTAATAGCTTCCATGGACCTACAAAAAAAGTATTTGTTCGAGAAACCCGCCTTAA
CGTAACGGGAAGGACCGCAAGATGGTTACTGCTTCTGTCTGAATTCGACATCACGTATGTAACCA
AAAAGGAAGGGCGATAGCAGAAGACCTTGCACCCGGAACATGAGTTTAAGGATTGCTTCCCAGAC
GAGGAAATAGCTGTCACAGAAGAGGGGAATAAGAAGAACTGCTACTAATAGTTCTTTAATTAGAA
CTGCTACGCAACTAATTGAACTATTCTATTATTCAAATGGAACTATGATATTATTCTAATTGAAC
TATGATATTAGCCTATTCTCATTTCACTATTCTATTATTCTAATG
Found at i:378058 original size:22 final size:22
Alignment explanation
Indices: 378030--378087 Score: 80
Period size: 22 Copynumber: 2.6 Consensus size: 22
378020 GCAACTAATT
**
378030 GAACTATTCTATTATTCAAATG
1 GAACTATGATATTATTCAAATG
* *
378052 GAACTATGATATTATTCTAATT
1 GAACTATGATATTATTCAAATG
378074 GAACTATGATATTA
1 GAACTATGATATTA
378088 GCCTATTCTC
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 32 1.00
ACGTcount: A:0.38, C:0.10, G:0.10, T:0.41
Consensus pattern (22 bp):
GAACTATGATATTATTCAAATG
Left flanking sequence: Indices 377530 -- 378029
CGCCAGGAAGCCTTTATTACTATACCTATCAGTCACTGAAACCACTATGGGGTCTATGTTGGCTT
AATACGATGAAGCTTAATACGATGAAGCGGAAGTAAAGGGCCATATACTACCAACGTAAGAAAAT
GACTGACTACAAGACCAGGTATACCAATTTGGAGAAAACCTGCTTGGCTTTGGTTTGGGTAAGGC
GGAAATTGAGGCATTACATGCTGTCTTACCCAGTACATTTAATAGCTTCCATGGACCTACAAAAA
AAGTATTTGTTCGAGAAACCCGCCTTAACGTAACGGGAAGGACCGCAAGATGGTTACTGCTTCTG
TCTGAATTCGACATCACGTATGTAACCAAAAAGGAAGGGCGATAGCAGAAGACCTTGCACCCGGA
ACATGAGTTTAAGGATTGCTTCCCAGACGAGGAAATAGCTGTCACAGAAGAGGGGAATAAGAAGA
ACTGCTACTAATAGTTCTTTAATTAGAACTGCTACGCAACTAATT
Right flanking sequence: Indices 378088 -- 378587
GCCTATTCTCATTTCACTATTCTATTATTCTAATGGAACTATTCAATTATAAGCGTAGCTGTTCG
AATTGAACTATGATATTTGTTGCTACGCAGTTCTCATTGAACTATTCAATTTGTTGCTACGCTGT
TCTTCTTTTCAGCTCCTTTCTTTCCTTATAGTATAGTATAGTTATTGAACACCAACCCAATCTCG
ACTTTAAAGACTAAGAGGAGTGGGGAAGGTAGCGAAAACAAGCAAAAGAAAGGAGCGTTTAGACA
GAATAAAGGAGAGTTGCGTAGCTGTTCTCCTCTTTTCTTCTCTTAATCAATTACTTAAGCACAAG
AACGTCGACTTTATGTAGCAGGGAAAGGAGTTCCAGACTGCTCGCTTTTACTTACAGGAGAGGAA
AAGTAAAGACTGACTTGTTAGAGTAAGGAGAAAGACTGACTTGTTAGAGTAGCTTTCCACGCCCT
TCTGTTCTTCTTTCATCTCCTCTCCTTTTAGTCGAGCTTCTTTCA
Found at i:378192 original size:34 final size:34
Alignment explanation
Indices: 378154--378220 Score: 100
Period size: 34 Copynumber: 2.0 Consensus size: 34
378144 AGCTGTTCGA
*
378154 ATTGAACTA-TGATATTTGTTGCTACGCAGTTCTC
1 ATTGAACTATTCA-ATTTGTTGCTACGCAGTTCTC
*
378188 ATTGAACTATTCAATTTGTTGCTACGCTGTTCT
1 ATTGAACTATTCAATTTGTTGCTACGCAGTTCT
378221 TCTTTTCAGC
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
34 28 0.93
35 2 0.07
ACGTcount: A:0.22, C:0.18, G:0.16, T:0.43
Consensus pattern (34 bp):
ATTGAACTATTCAATTTGTTGCTACGCAGTTCTC
Left flanking sequence: Indices 377654 -- 378153
GAAAATGACTGACTACAAGACCAGGTATACCAATTTGGAGAAAACCTGCTTGGCTTTGGTTTGGG
TAAGGCGGAAATTGAGGCATTACATGCTGTCTTACCCAGTACATTTAATAGCTTCCATGGACCTA
CAAAAAAAGTATTTGTTCGAGAAACCCGCCTTAACGTAACGGGAAGGACCGCAAGATGGTTACTG
CTTCTGTCTGAATTCGACATCACGTATGTAACCAAAAAGGAAGGGCGATAGCAGAAGACCTTGCA
CCCGGAACATGAGTTTAAGGATTGCTTCCCAGACGAGGAAATAGCTGTCACAGAAGAGGGGAATA
AGAAGAACTGCTACTAATAGTTCTTTAATTAGAACTGCTACGCAACTAATTGAACTATTCTATTA
TTCAAATGGAACTATGATATTATTCTAATTGAACTATGATATTAGCCTATTCTCATTTCACTATT
CTATTATTCTAATGGAACTATTCAATTATAAGCGTAGCTGTTCGA
Right flanking sequence: Indices 378221 -- 378720
TCTTTTCAGCTCCTTTCTTTCCTTATAGTATAGTATAGTTATTGAACACCAACCCAATCTCGACT
TTAAAGACTAAGAGGAGTGGGGAAGGTAGCGAAAACAAGCAAAAGAAAGGAGCGTTTAGACAGAA
TAAAGGAGAGTTGCGTAGCTGTTCTCCTCTTTTCTTCTCTTAATCAATTACTTAAGCACAAGAAC
GTCGACTTTATGTAGCAGGGAAAGGAGTTCCAGACTGCTCGCTTTTACTTACAGGAGAGGAAAAG
TAAAGACTGACTTGTTAGAGTAAGGAGAAAGACTGACTTGTTAGAGTAGCTTTCCACGCCCTTCT
GTTCTTCTTTCATCTCCTCTCCTTTTAGTCGAGCTTCTTTCATCTCCTTCCTTTACGCAATTAGC
CTATTCTCATTTCACTATGATATTAGAACAAGGCATATTGGAAAGTACAATTCTAAGCGTAGCAG
TTCTAAGGCGAGTTGCTTTCACTCGTCTCATTTCCTTACTTCTTG
Found at i:378500 original size:26 final size:26
Alignment explanation
Indices: 378471--378526 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
378461 TACTTACAGG
378471 AGAGGAA-AAGTAAAGACTGACTTGTT
1 AGAGGAAGAAG-AAAGACTGACTTGTT
* *
378497 AGAGTAAGGAGAAAGACTGACTTGTT
1 AGAGGAAGAAGAAAGACTGACTTGTT
378523 AGAG
1 AGAG
378527 TAGCTTTCCA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
26 25 0.93
27 2 0.07
ACGTcount: A:0.41, C:0.07, G:0.30, T:0.21
Consensus pattern (26 bp):
AGAGGAAGAAGAAAGACTGACTTGTT
Left flanking sequence: Indices 377971 -- 378470
GGGGAATAAGAAGAACTGCTACTAATAGTTCTTTAATTAGAACTGCTACGCAACTAATTGAACTA
TTCTATTATTCAAATGGAACTATGATATTATTCTAATTGAACTATGATATTAGCCTATTCTCATT
TCACTATTCTATTATTCTAATGGAACTATTCAATTATAAGCGTAGCTGTTCGAATTGAACTATGA
TATTTGTTGCTACGCAGTTCTCATTGAACTATTCAATTTGTTGCTACGCTGTTCTTCTTTTCAGC
TCCTTTCTTTCCTTATAGTATAGTATAGTTATTGAACACCAACCCAATCTCGACTTTAAAGACTA
AGAGGAGTGGGGAAGGTAGCGAAAACAAGCAAAAGAAAGGAGCGTTTAGACAGAATAAAGGAGAG
TTGCGTAGCTGTTCTCCTCTTTTCTTCTCTTAATCAATTACTTAAGCACAAGAACGTCGACTTTA
TGTAGCAGGGAAAGGAGTTCCAGACTGCTCGCTTTTACTTACAGG
Right flanking sequence: Indices 378527 -- 379026
TAGCTTTCCACGCCCTTCTGTTCTTCTTTCATCTCCTCTCCTTTTAGTCGAGCTTCTTTCATCTC
CTTCCTTTACGCAATTAGCCTATTCTCATTTCACTATGATATTAGAACAAGGCATATTGGAAAGT
ACAATTCTAAGCGTAGCAGTTCTAAGGCGAGTTGCTTTCACTCGTCTCATTTCCTTACTTCTTGG
AACTCTCCAAAAAAGACTTACAGGAGAGGAAAAGTATGGAATATTAGAAGCGTAGCTACTATGAT
ATTAGAAGCGTAGCAGTTCTGCTTTCCACGCCTTTCCTTCCAACAAGTATAGTTGCCAACCTTGT
GGAATAGTTCAATTCGAACAGCGTAGCAATTAGCCTATTCTCATTTCACTTTTGTTAAGTAATTG
ATTATGATTAATCAAATCTCGACTTTAAAGACTTACAGGAGAGGAAAAGTATGGATTAGTTGAAA
GAGCTACTTCGTTCGAGCTTCATTACATCCACCCTCTCACTTCGT
Found at i:380702 original size:22 final size:22
Alignment explanation
Indices: 380676--380743 Score: 82
Period size: 22 Copynumber: 3.1 Consensus size: 22
380666 GCTACGCAAC
**
380676 TAATAGAATAGTTCAATTCTCA
1 TAATAGAATAGTTCAATTCGAA
** **
380698 TAATATCATAGTGAAATTCGAA
1 TAATAGAATAGTTCAATTCGAA
380720 TAATAGAATAGTTCAATTCGAA
1 TAATAGAATAGTTCAATTCGAA
380742 TA
1 TA
380744 GGCTAATATC
Statistics
Matches: 36, Mismatches: 10, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
22 36 1.00
ACGTcount: A:0.44, C:0.10, G:0.12, T:0.34
Consensus pattern (22 bp):
TAATAGAATAGTTCAATTCGAA
Left flanking sequence: Indices 380176 -- 380675
GGCTAAACGCTCCTACTTCAATTAAAGCTCGCCCTCCCTCACTAGAAGTCAGTTTTCCCACGTCC
GGTAGACTTTCTTTCTACAACCTTGACTTGAACTAATATCATAGTTCAATTAGTTGCGTAGCAGC
TGCGCGAAAGCCGTTGCGCCTTACTAAGCAAGAAAGGGCAAATTGAAGACTGAGAACAACTAATA
TCATAGTTCCATTCTCATAGGCATATTTGATGATGTCGCTTCATTCAATCCACCCTCGTTGGAAA
GCTAACACCCAATTTGCGATGCTTTTAAGCCCCCTTTCCGAACTCTAATGTGAGATTGGTAATGA
GGGAGGTTTAAGCCGTGTTAAATGTGCCGCAAATGGCCTTACTTCTTGCCTTCTAATAGAATCGT
TCAATTCTCATAGGCAAGAAGTAAGGAAATGAGACGAGACGCAACTACTAAGAAAGTAATCTCTT
AAGTAAAGGGTACTAATAGTTCTTTAATTAGAACTGCTACGCAAC
Right flanking sequence: Indices 380744 -- 381243
GGCTAATATCATAGTTCAATTCTCATAGGCATATTGGATCGAATAGGCATATTGGAAAGTACAAT
TTCGGTTTGAAACGTCGCATTTCTGCTTTTCAAAAGGGGCGAGGGCTGGTGGTGAAGGAAAGGGG
GAAGCGACTCGTTCCTTCCTTGCTTGTTAAAACTCCTTTCCTCTTCAAGCTAAACTCATTTGTCT
TTCACTTCATTGTGAAAGCGGGTTGAGTTCATACATTTTGAATGCTTGAAGAAGAAGATCGCTTT
AAAAGGAAAGGAGTGGAAAGAAACGAGACTGTAAGGAGAGGAGTGTTGAAGAACAGAGAGGAAGA
GGAGTGAAAGAAGAACAGAGAGGAAGAGGAGTGAAAGAAGAACAGAGAGGAAGAGGAGCGTAGCA
GTTCGAATTGAACTATTCCACAAGGAAGCAGAAAGCGGTTGCCGCCGAGGCTGTTTAAGTTGCCA
AGGCTGTAGCTGCAGATCTTGCCCTTCGTTCATAGTTCGCGGCTT
Found at i:381086 original size:27 final size:27
Alignment explanation
Indices: 381051--381126 Score: 152
Period size: 27 Copynumber: 2.8 Consensus size: 27
381041 GAGGAGTGTT
381051 GAAGAACAGAGAGGAAGAGGAGTGAAA
1 GAAGAACAGAGAGGAAGAGGAGTGAAA
381078 GAAGAACAGAGAGGAAGAGGAGTGAAA
1 GAAGAACAGAGAGGAAGAGGAGTGAAA
381105 GAAGAACAGAGAGGAAGAGGAG
1 GAAGAACAGAGAGGAAGAGGAG
381127 CGTAGCAGTT
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 49 1.00
ACGTcount: A:0.51, C:0.04, G:0.42, T:0.03
Consensus pattern (27 bp):
GAAGAACAGAGAGGAAGAGGAGTGAAA
Left flanking sequence: Indices 380551 -- 381050
TTCTAATAGAATCGTTCAATTCTCATAGGCAAGAAGTAAGGAAATGAGACGAGACGCAACTACTA
AGAAAGTAATCTCTTAAGTAAAGGGTACTAATAGTTCTTTAATTAGAACTGCTACGCAACTAATA
GAATAGTTCAATTCTCATAATATCATAGTGAAATTCGAATAATAGAATAGTTCAATTCGAATAGG
CTAATATCATAGTTCAATTCTCATAGGCATATTGGATCGAATAGGCATATTGGAAAGTACAATTT
CGGTTTGAAACGTCGCATTTCTGCTTTTCAAAAGGGGCGAGGGCTGGTGGTGAAGGAAAGGGGGA
AGCGACTCGTTCCTTCCTTGCTTGTTAAAACTCCTTTCCTCTTCAAGCTAAACTCATTTGTCTTT
CACTTCATTGTGAAAGCGGGTTGAGTTCATACATTTTGAATGCTTGAAGAAGAAGATCGCTTTAA
AAGGAAAGGAGTGGAAAGAAACGAGACTGTAAGGAGAGGAGTGTT
Right flanking sequence: Indices 381127 -- 381626
CGTAGCAGTTCGAATTGAACTATTCCACAAGGAAGCAGAAAGCGGTTGCCGCCGAGGCTGTTTAA
GTTGCCAAGGCTGTAGCTGCAGATCTTGCCCTTCGTTCATAGTTCGCGGCTTGTCTTCGCGCCTC
TCCTTATAGTAAGAGTTTTCTTAGAACAGCGCCCCTCTCCCTACAGTCGAGTAGCTTCGCCCCTC
ACATTCGTTCTCGTTCAAACAGCTTCGCCCCCGGTCGAGCTTCATTACGTCTACCCGGTCGAGCT
TCCTTCCCCTTTCGTCTTAACTACAACTACATTACGCAAGCTCCACCAATACCTATACCTACCTA
TAGAATAGAGTCACAAAAGTACCAGTGACGGTGACTTTGACGGTTTATGGATTCAGTCAGCTAAA
CTCCTCAATAAATATCAACAAACAACATGTCGTGACCGGTCTAGCTAAGTTTCCAAAGGTGAACA
GCCCCCTGTCCTTTATAGTCGTAAAGAGCTTCTCAGAAAAGTAAG
Found at i:382608 original size:22 final size:22
Alignment explanation
Indices: 382582--382671 Score: 128
Period size: 22 Copynumber: 4.1 Consensus size: 22
382572 GCTACGCAAC
* *
382582 TAATATCATAGTTCCATT-TGAA
1 TAATATCATAGTTCAATTCT-CA
**
382604 TAATAGAATAGTTCAATTCTCA
1 TAATATCATAGTTCAATTCTCA
382626 TAATATCATAGTTCAATTCTCA
1 TAATATCATAGTTCAATTCTCA
382648 TAATATCATAGTTCAATTCTCA
1 TAATATCATAGTTCAATTCTCA
382670 TA
1 TA
382672 GGCATAAAAG
Statistics
Matches: 61, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
22 60 0.98
23 1 0.02
ACGTcount: A:0.38, C:0.16, G:0.07, T:0.40
Consensus pattern (22 bp):
TAATATCATAGTTCAATTCTCA
Left flanking sequence: Indices 382082 -- 382581
TTCACGAACGGGTATCTCTTTAAAACAGCTACGCTTCTATACTTGTTGGAAGGAGCGAAAGCCAC
TTGACCGTAGGGAAAGGAGCTGAAAAGCGACTCGACTTACAGGAGAGGCGCGAAGCTGTTTGACT
TTATGTAGCAGGGAAAGGAGCTAAAAGCAACTCGATAGACTATAAGGGAAGAGAGGAGTGAAAGA
AGAATTGAGAACGGGAACCTCGTAGCTTTAAGATCGATCGGACTTGGCTTACCAATTAGAATAGG
CATATTTGATGACGAAGCGAAGCTACGAGTTCAGGGAAAAGGAGTAGGTTCGAAGTTCCTAGCCC
GGCTTGAAGCCAAGTTTCATTCTTTAACTGCTACATCAATTCCTTATAGTTCAAACTGGAATTCG
AGTTTCTAGTCTCGTTTCCGCTTAGAAGAAGATCGCTTTAAATGGAACGCCTTTCCAACTTCCGC
TCCGTTTTCCTTATAGTAAGAGTTTTCTTAGAACTGCTACGCAAC
Right flanking sequence: Indices 382672 -- 383171
GGCATAAAAGATGATGTCGCTTAGAATAGGCTTTCCACTCCTCTCCTTTACTATAAAGAAGGAAG
TTCCAAGCCGCTTGCTTGACTATAAAGTTTGGAGAGGAACGAAGTCACTTGACCGCAGGGAAAGA
AGCTGAAAGCAAAAAGACTTACAGGAGAGGGGCGTTTAGCTTAGAGAGAGGGGGCGAAAGGCGCG
AAGCTGCTTGACTGCAAGGAAAGGAGTGGAAAGCCTATTCGAATTGAACTATTCCGCAAGGAGAA
AGACTTACTTGTTAGAGGAAGGGAGTTTATTTCCTTACTCTAAGCGGAAGAAGAACAGCGTAGCT
TGCCTTAGCGCATCCCTTTTCATTTCATAAAAGCAAGTAAACTCCCTTTTCTTTTCATTAATGAC
GGAACGAAGGTAGCTCGAACGAATGTGAGAGGCGTGGAAGAAGCTTTAAAAGGAAAAGCGCGAAA
AGCAACTTGACTATAAACTTAGAACTGCTACGCAGTTCTAATTAA
Found at i:383748 original size:22 final size:22
Alignment explanation
Indices: 383704--383749 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 22
383694 GCTACGCAAC
***
383704 TAATAGAATAGTTCCATTAGAA
1 TAATAGAATAGTGAAATTAGAA
*
383726 TAATAGAATAGTGAAATTCGAA
1 TAATAGAATAGTGAAATTAGAA
383748 TA
1 TA
383750 GGCATATTTG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.48, C:0.07, G:0.15, T:0.30
Consensus pattern (22 bp):
TAATAGAATAGTGAAATTAGAA
Left flanking sequence: Indices 383204 -- 383703
TCTTCTGTGACCCTCGTCTGGGAAGCAATCCTTAAACTCATGGCACACTCACTATATCTATATAC
GTCAAACTTTGACGCCTTTCGAAAAAGCCACTCGTTTTTACTATAAGGAAAGGCGTTCCAATGTG
AGAGGTGCGGAGCCACTTTCCAGTTAAGGAGAGGAGTGTTGGCCGGTAACGAAACTAAACACGGG
TCTTACTTCCTTTTCTTTTCCCCCTTGAGAATCGATTTCAAACCGGTCCGGAAAGAGAATCCGCT
TTCATCTGACCTTCGAAACTCTCTTCTCATACTCCTCGTTGAGTCTTTCTATTTAGAGAGAGGAG
CGGAGCCACTCGAACGAATGTGAGAGGGGGCGAAAGAAGAACAGCTACGCTTCTAATATCATAGT
TCAATTCTCATAGGCAAGAAGTAAGGAAATGAGACGAGACGCAACTACTAAGAAAGTAATCTCTT
AAGTAAAGGGTACTAATAGTTCTTTAATTAGAACTGCTACGCAAC
Right flanking sequence: Indices 383750 -- 384249
GGCATATTTGATGATGTCGCTTCCGGTATAAGCGATGGTCCGGGCTGGGCTATAGTAGTTGCTAA
AGGCGCTAAAGCGATGGTCCGGGCAGAAAAGATCAATGAAAGACTAGAGCGCGAGCTAGCTGATC
TACCGACAAGTCCTTGATTTCTTATCCGCGAAGTCAGATAGTTCTTTCTTGCTTTCTCCTACTCT
TTCTTTATCGTATTATAAAGAACTTGCCTTCCTTGGCTACTAAAGACTGTAAGGAGTTCCAAGCA
ACGAGACTGCTAAGGAGTGGAAAGCAACGAGACTATAAACTTAGAAGCGTAGCTGTTCGAATGGA
ACTATTCTCCTATTCGAATTGAACGATTCTATTAGTTTCACTATTCTCCTATTCTCATTTCAGTT
TTGTTAAGGCCTATGAACTGGAATTGAATATTCTTAATCGTATTATAAATCACTTGCCTTCCTGT
GTTGCTAAGGGAAAATGAAGAACAGGAGCGAAAAGACACTTGACT
Found at i:384016 original size:25 final size:26
Alignment explanation
Indices: 383988--384043 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
383978 TGGCTACTAA
* *
383988 AGACTG-TAAGGAGTTCCAAGCAACG
1 AGACTGCTAAGGAGTGCAAAGCAACG
*
384013 AGACTGCTAAGGAGTGGAAAGCAACG
1 AGACTGCTAAGGAGTGCAAAGCAACG
384039 AGACT
1 AGACT
384044 ATAAACTTAG
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
25 6 0.22
26 21 0.78
ACGTcount: A:0.38, C:0.18, G:0.30, T:0.14
Consensus pattern (26 bp):
AGACTGCTAAGGAGTGCAAAGCAACG
Left flanking sequence: Indices 383488 -- 383987
TCTCATACTCCTCGTTGAGTCTTTCTATTTAGAGAGAGGAGCGGAGCCACTCGAACGAATGTGAG
AGGGGGCGAAAGAAGAACAGCTACGCTTCTAATATCATAGTTCAATTCTCATAGGCAAGAAGTAA
GGAAATGAGACGAGACGCAACTACTAAGAAAGTAATCTCTTAAGTAAAGGGTACTAATAGTTCTT
TAATTAGAACTGCTACGCAACTAATAGAATAGTTCCATTAGAATAATAGAATAGTGAAATTCGAA
TAGGCATATTTGATGATGTCGCTTCCGGTATAAGCGATGGTCCGGGCTGGGCTATAGTAGTTGCT
AAAGGCGCTAAAGCGATGGTCCGGGCAGAAAAGATCAATGAAAGACTAGAGCGCGAGCTAGCTGA
TCTACCGACAAGTCCTTGATTTCTTATCCGCGAAGTCAGATAGTTCTTTCTTGCTTTCTCCTACT
CTTTCTTTATCGTATTATAAAGAACTTGCCTTCCTTGGCTACTAA
Right flanking sequence: Indices 384044 -- 384543
ATAAACTTAGAAGCGTAGCTGTTCGAATGGAACTATTCTCCTATTCGAATTGAACGATTCTATTA
GTTTCACTATTCTCCTATTCTCATTTCAGTTTTGTTAAGGCCTATGAACTGGAATTGAATATTCT
TAATCGTATTATAAATCACTTGCCTTCCTGTGTTGCTAAGGGAAAATGAAGAACAGGAGCGAAAA
GACACTTGACTTACAGGAGTTCCAAGCAACGAGACTGTAAGGAGTGGAAAGAAGAACAGCGTAGC
AGTTCCCCTTTCTCCTATTCTCATTTCACTAGACGAATGTTCGAGGAGTTCCAAGCCTTGTTCGA
ATTGAATAGTTCCACAAGGAGAAAGACTTACAGGAGTTCCAAGCAACGAGACTGCTAAGGAAAGA
GAGTTGCTACGCTGTTCTCATTGAACTATTCTCCTATTCTCATTTCACTATTCGAATGTGAGAGG
AGTGAAAGCTACTTTCCTGTACTTGACTTACAGGAGTGGAAAGAA
Found at i:384781 original size:15 final size:15
Alignment explanation
Indices: 384761--384789 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
384751 TTAAGTATTA
384761 GAAGCGTATTAGAAG
1 GAAGCGTATTAGAAG
384776 GAAGCGTATTAGAA
1 GAAGCGTATTAGAA
384790 CTATGATATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.41, C:0.07, G:0.31, T:0.21
Consensus pattern (15 bp):
GAAGCGTATTAGAAG
Left flanking sequence: Indices 384261 -- 384760
CAAGCAACGAGACTGTAAGGAGTGGAAAGAAGAACAGCGTAGCAGTTCCCCTTTCTCCTATTCTC
ATTTCACTAGACGAATGTTCGAGGAGTTCCAAGCCTTGTTCGAATTGAATAGTTCCACAAGGAGA
AAGACTTACAGGAGTTCCAAGCAACGAGACTGCTAAGGAAAGAGAGTTGCTACGCTGTTCTCATT
GAACTATTCTCCTATTCTCATTTCACTATTCGAATGTGAGAGGAGTGAAAGCTACTTTCCTGTAC
TTGACTTACAGGAGTGGAAAGAAGCTTTAAAATGAAGTGAGAGGAGCTACGCAGTTTGAACTATT
CAATTCTAAGCGTAGCAGTTCCCCTTTCTCCTATTCTCTCTGTCTCGTTGCGTAGCAGTTCTCAT
TTCACTTTCATTTCATATTCTTAATCGTATTATAAATCACTTGCCTTCCTTAGAGACTGTAAGGA
GTGGAAAGCAACGAGACTGTAAGGAGTTCCAAGCTTTAAGTATTA
Right flanking sequence: Indices 384790 -- 385289
CTATGATATTTGTTGCGTAGCTGTTCTCATAGAATAGTTCAATTAGTTGCTACGCTGTTCTAAGA
AAACTATTAGTAGCAGTTCTTCTTATTCCCCTCTCCTTCCTATAATAATAGAAGCGAAGCAGCTT
GAACGAGACTGTAAGGAGTGGAAAGAAACTCGAGCGAATGCGAGAGGAGTGGAAAGCTTTAAGTA
TGATAAGCGTAGCAGTTCTCATTGATTATTATTAATCGTATTATAAAGAACTTGCCTTCCTGTGT
TGCTAAGTTTATAGTAAGGAAAGAGAGGCGTAGAAGCAACTTGACTGTAAGGGTTTCCGCTACGC
TGTTCTCATAGAATAGTTCAATTTGTTGCTACGCAGTTCGAATCAGGTATGAAGAGGGAAAGAGA
GGCGCGGAAAGAAGAACAAGGGTTGGAGCTACGCAACTACACTTGTTGGAAGGGTTGGAGCGTAG
CAGTTCTCATTTCCCCTTTCTCCTATTCTCATTGAACGAAAAGGG
Found at i:386016 original size:32 final size:32
Alignment explanation
Indices: 385992--386057 Score: 132
Period size: 32 Copynumber: 2.1 Consensus size: 32
385982 ACGTTGCGTA
385992 GCAGTTCTAATTAAAGAACTAGACGAAGCTAC
1 GCAGTTCTAATTAAAGAACTAGACGAAGCTAC
386024 GCAGTTCTAATTAAAGAACTAGACGAAGCTAC
1 GCAGTTCTAATTAAAGAACTAGACGAAGCTAC
386056 GC
1 GC
386058 TATAGTAAAG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.39, C:0.20, G:0.20, T:0.21
Consensus pattern (32 bp):
GCAGTTCTAATTAAAGAACTAGACGAAGCTAC
Left flanking sequence: Indices 385492 -- 385991
AAAAGACTGTAAGTCGAGTTGCTGAAGCGACATCATCTCATTGAACGTAGATATTTGTTGCTACG
CAGTTCGAATCAGGTATGAAGAGGGAAAGGAGCTAAAAGCAGCTCGAGCGAATGCGAGAGGAGCT
AAAAGCAAAAAGACTGTAAGTCGAGTTGCTACGCTCAGTCGAGTTGCTACGCAGTTCTCATTTCC
CCTTTCTCCTATTCGAATTGAACTATTCCACAAGGAGAAAGACTTACAGTCGAGTTGCTACGCTG
TTCTGCTTTCCACGCCTTTCCTTCCTTAAAGTTAATACATTTCTTATTCTTTATCGTATTATAAA
GAACTTGCCTTCCTTGGCTACTAAAGAACTTGCCTTCCTTGTTCTCAATTAGTCGGTGAGTTGGC
TTCACTTCCGGGGACCGGCCCAGCCTTGAAAGTCAGGGAAAGGGCGCTACTGGGCGGAAGCTACT
CTGTTATCTCACGTTCTTCATGAGGACGAAGCCAGACGTTGCGTA
Right flanking sequence: Indices 386058 -- 386557
TATAGTAAAGTAGCGTTATTGAACACCAACCAAATCTCGACAAAAAACACTGTAAGGAGAGGAAA
AGTATGGATTAGAAGCGTAGCTGTTCTAAGGAGAGTTGCTACGCTGTTCTCCTCTTTTCTTCTCT
TAATCAATTATCAATTGAGAGTTAGAAAATGATAACACAAAAATGCATTGTGGAATAGTGAAATT
CGAATAATAGAATAGTGAAATTCGAATAGGCAAGAAGAGCATTTGAAATAGGAGCAGAGTCTGTC
ACGTGCAGCCTACTCTCTTCGCTCCCCTCCTCTTATCCTTCCTTTCTTTCATAAGGCAAGGCCTT
TAGACTAGCCCTCTTCTGGAAAGAGATTCTATAGCACCGGAGTCGTTCAAAGAGCCCTTCTTTCT
ATTTTGTGCGTGTCAACTATTGATTCTATGCCATCAAAGCATGCTAACAGCAGAAATGCAAGTAC
ATACAACTGCGGTAATGCCGCATCGTTGATAAAGAACCTTGCCAT
Found at i:392521 original size:42 final size:42
Alignment explanation
Indices: 392473--392673 Score: 278
Period size: 37 Copynumber: 5.0 Consensus size: 42
392463 GCCTTCCCTC
392473 CAACAAGCAGCGGATGAGCGCACTAGCGCGAAAGCCGTTGCG
1 CAACAAGCAGCGGATGAGCGCACTAGCGCGAAAGCCGTTGCG
* *
392515 CAACAAGCA----ACG-GCTCACTAGCGCGAAAGCCGTTGCG
1 CAACAAGCAGCGGATGAGCGCACTAGCGCGAAAGCCGTTGCG
*
392552 CAACAAGCAGCGGATGAGCGCACTAGCGTGAAAGCCGTTGCG
1 CAACAAGCAGCGGATGAGCGCACTAGCGCGAAAGCCGTTGCG
* *
392594 CAACAAGCA----ACG-GCTCACTAGCGCGAAAGCCGTTGCG
1 CAACAAGCAGCGGATGAGCGCACTAGCGCGAAAGCCGTTGCG
*
392631 CAACAAGCAGCGGATGAGCGCACTAGCGTGAAAGCCGTTGCG
1 CAACAAGCAGCGGATGAGCGCACTAGCGCGAAAGCCGTTGCG
392673 C
1 C
392674 GTTAGTCACG
Statistics
Matches: 138, Mismatches: 11, Indels: 20
0.82 0.07 0.12
Matches are distributed among these distances:
37 65 0.47
38 4 0.03
41 4 0.03
42 65 0.47
ACGTcount: A:0.29, C:0.29, G:0.31, T:0.11
Consensus pattern (42 bp):
CAACAAGCAGCGGATGAGCGCACTAGCGCGAAAGCCGTTGCG
Left flanking sequence: Indices 391973 -- 392472
GAATAGCCAAACCAACCCAGCTGGCTGGTCAATCTCAGAGATCTTATCGGCCGGCAAACCGGAGA
CGGACGACCACGGTCCCGGCCTTACCAGCACCGGAGGTGTACTAATCAATGAACCCACGAAACCA
ACTTTCTTTTATGACAAAATAAACCAAGCCTAAGCGGTCACGACATCTTGTTGATATTGATTGAG
TTGGAGGGACTTTCGCTGACTGAATCCATCCATAAACCTAGACCGCGGTAACCTTCGTAACCAAA
GCGTCACGACAACATCCAAAGGTCACCTTTGGGTTCTTAAGTAGGGGGGCAAGGAGGAGCACGTA
GGAATGCCGACCACTACATAAGCCACTAGTGGCTGAGAGAAAGCGAGCAGCACCTTGTATAGGTT
GGGCGGAGCTTAAAGAAGCAAGCCCCTATCAGAGAAAGCCATTGCGCGCTAGCCTAGCTAGCTAA
CGTTTTTCAGCTGGCTGTTATGTTAGTTGTAGCGCGCCTTCCCTC
Right flanking sequence: Indices 392674 -- 393173
GTTAGTCACGCGCATCCGTTTTCTTGCTGCATCCATTTTCTTGCTGTCACGCGCATCCGTTTTCT
TGCTGCATCCATTTTCTTGCTGTCACGCGCATACGTTTTCTTGCTCACTTTGGAAAGATTTTTCA
GTATTTTCTTATGATGACCTGGTCGAGAGAGTACGATACATCGGTGTAAAAGATTTCCTTTTTTC
TGTGAGCTTGGTTTACTTGACCGAAGGGTGCAGTAGAACTTGAAGGAGAGGAATAAATACCAGGT
CTATAATTTTTACAAAAGGAGGACCGCTATTGGGAAATATCTTCTTGGTCGTCATCAAAGAAGTT
GACGTCCGGGGCTTCCTCTTTCCCTTTAAAATCAAAGCGGTGAAGTCCATCCTAAAGTTCCAAAT
CTACATCCAACACCAGAGGTTCCTGATGAGAACAAATTGTAAGGCGTTGAAAGAAACCCTTAAGA
AAGATGTCAAGACCCTCTTTGACTTTGATATAGAACACATAAAGG
Found at i:392562 original size:79 final size:79
Alignment explanation
Indices: 392473--392673 Score: 393
Period size: 79 Copynumber: 2.5 Consensus size: 79
392463 GCCTTCCCTC
*
392473 CAACAAGCAGCGGATGAGCGCACTAGCGCGAAAGCCGTTGCGCAACAAGCAACGGCTCACTAGCG
1 CAACAAGCAGCGGATGAGCGCACTAGCGTGAAAGCCGTTGCGCAACAAGCAACGGCTCACTAGCG
392538 CGAAAGCCGTTGCG
66 CGAAAGCCGTTGCG
392552 CAACAAGCAGCGGATGAGCGCACTAGCGTGAAAGCCGTTGCGCAACAAGCAACGGCTCACTAGCG
1 CAACAAGCAGCGGATGAGCGCACTAGCGTGAAAGCCGTTGCGCAACAAGCAACGGCTCACTAGCG
392617 CGAAAGCCGTTGCG
66 CGAAAGCCGTTGCG
392631 CAACAAGCAGCGGATGAGCGCACTAGCGTGAAAGCCGTTGCGC
1 CAACAAGCAGCGGATGAGCGCACTAGCGTGAAAGCCGTTGCGC
392674 GTTAGTCACG
Statistics
Matches: 121, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
79 121 1.00
ACGTcount: A:0.29, C:0.29, G:0.31, T:0.11
Consensus pattern (79 bp):
CAACAAGCAGCGGATGAGCGCACTAGCGTGAAAGCCGTTGCGCAACAAGCAACGGCTCACTAGCG
CGAAAGCCGTTGCG
Left flanking sequence: Indices 391973 -- 392472
GAATAGCCAAACCAACCCAGCTGGCTGGTCAATCTCAGAGATCTTATCGGCCGGCAAACCGGAGA
CGGACGACCACGGTCCCGGCCTTACCAGCACCGGAGGTGTACTAATCAATGAACCCACGAAACCA
ACTTTCTTTTATGACAAAATAAACCAAGCCTAAGCGGTCACGACATCTTGTTGATATTGATTGAG
TTGGAGGGACTTTCGCTGACTGAATCCATCCATAAACCTAGACCGCGGTAACCTTCGTAACCAAA
GCGTCACGACAACATCCAAAGGTCACCTTTGGGTTCTTAAGTAGGGGGGCAAGGAGGAGCACGTA
GGAATGCCGACCACTACATAAGCCACTAGTGGCTGAGAGAAAGCGAGCAGCACCTTGTATAGGTT
GGGCGGAGCTTAAAGAAGCAAGCCCCTATCAGAGAAAGCCATTGCGCGCTAGCCTAGCTAGCTAA
CGTTTTTCAGCTGGCTGTTATGTTAGTTGTAGCGCGCCTTCCCTC
Right flanking sequence: Indices 392674 -- 393173
GTTAGTCACGCGCATCCGTTTTCTTGCTGCATCCATTTTCTTGCTGTCACGCGCATCCGTTTTCT
TGCTGCATCCATTTTCTTGCTGTCACGCGCATACGTTTTCTTGCTCACTTTGGAAAGATTTTTCA
GTATTTTCTTATGATGACCTGGTCGAGAGAGTACGATACATCGGTGTAAAAGATTTCCTTTTTTC
TGTGAGCTTGGTTTACTTGACCGAAGGGTGCAGTAGAACTTGAAGGAGAGGAATAAATACCAGGT
CTATAATTTTTACAAAAGGAGGACCGCTATTGGGAAATATCTTCTTGGTCGTCATCAAAGAAGTT
GACGTCCGGGGCTTCCTCTTTCCCTTTAAAATCAAAGCGGTGAAGTCCATCCTAAAGTTCCAAAT
CTACATCCAACACCAGAGGTTCCTGATGAGAACAAATTGTAAGGCGTTGAAAGAAACCCTTAAGA
AAGATGTCAAGACCCTCTTTGACTTTGATATAGAACACATAAAGG
Found at i:392705 original size:17 final size:17
Alignment explanation
Indices: 392685--392760 Score: 71
Period size: 17 Copynumber: 4.1 Consensus size: 17
392675 TTAGTCACGC
*
392685 GCATCCGTTTTCTTGCT
1 GCATCCATTTTCTTGCT
392702 GCATCCATTTTCTTGCTGT
1 GCATCCATTTTCTTGC--T
*
392721 CACGCGCATCCGTTTTCTTGCT
1 -----GCATCCATTTTCTTGCT
392743 GCATCCATTTTCTTGCT
1 GCATCCATTTTCTTGCT
392760 G
1 G
392761 TCACGCGCAT
Statistics
Matches: 49, Mismatches: 3, Indels: 14
0.74 0.05 0.21
Matches are distributed among these distances:
17 32 0.65
19 1 0.02
22 1 0.02
24 15 0.31
ACGTcount: A:0.09, C:0.30, G:0.17, T:0.43
Consensus pattern (17 bp):
GCATCCATTTTCTTGCT
Left flanking sequence: Indices 392185 -- 392684
GACTGAATCCATCCATAAACCTAGACCGCGGTAACCTTCGTAACCAAAGCGTCACGACAACATCC
AAAGGTCACCTTTGGGTTCTTAAGTAGGGGGGCAAGGAGGAGCACGTAGGAATGCCGACCACTAC
ATAAGCCACTAGTGGCTGAGAGAAAGCGAGCAGCACCTTGTATAGGTTGGGCGGAGCTTAAAGAA
GCAAGCCCCTATCAGAGAAAGCCATTGCGCGCTAGCCTAGCTAGCTAACGTTTTTCAGCTGGCTG
TTATGTTAGTTGTAGCGCGCCTTCCCTCCAACAAGCAGCGGATGAGCGCACTAGCGCGAAAGCCG
TTGCGCAACAAGCAACGGCTCACTAGCGCGAAAGCCGTTGCGCAACAAGCAGCGGATGAGCGCAC
TAGCGTGAAAGCCGTTGCGCAACAAGCAACGGCTCACTAGCGCGAAAGCCGTTGCGCAACAAGCA
GCGGATGAGCGCACTAGCGTGAAAGCCGTTGCGCGTTAGTCACGC
Right flanking sequence: Indices 392761 -- 393260
TCACGCGCATACGTTTTCTTGCTCACTTTGGAAAGATTTTTCAGTATTTTCTTATGATGACCTGG
TCGAGAGAGTACGATACATCGGTGTAAAAGATTTCCTTTTTTCTGTGAGCTTGGTTTACTTGACC
GAAGGGTGCAGTAGAACTTGAAGGAGAGGAATAAATACCAGGTCTATAATTTTTACAAAAGGAGG
ACCGCTATTGGGAAATATCTTCTTGGTCGTCATCAAAGAAGTTGACGTCCGGGGCTTCCTCTTTC
CCTTTAAAATCAAAGCGGTGAAGTCCATCCTAAAGTTCCAAATCTACATCCAACACCAGAGGTTC
CTGATGAGAACAAATTGTAAGGCGTTGAAAGAAACCCTTAAGAAAGATGTCAAGACCCTCTTTGA
CTTTGATATAGAACACATAAAGGGGGAGAGTCACAGTCTCCCTTATTTCCTAACAATAAAATGCA
TTTTTGGAAAGGCCAGTAACAATGCGATATTCCATAGATAAGCAA
Found at i:392735 original size:41 final size:41
Alignment explanation
Indices: 392678--392783 Score: 203
Period size: 41 Copynumber: 2.6 Consensus size: 41
392668 TTGCGCGTTA
392678 GTCACGCGCATCCGTTTTCTTGCTGCATCCATTTTCTTGCT
1 GTCACGCGCATCCGTTTTCTTGCTGCATCCATTTTCTTGCT
392719 GTCACGCGCATCCGTTTTCTTGCTGCATCCATTTTCTTGCT
1 GTCACGCGCATCCGTTTTCTTGCTGCATCCATTTTCTTGCT
*
392760 GTCACGCGCATACGTTTTCTTGCT
1 GTCACGCGCATCCGTTTTCTTGCT
392784 CACTTTGGAA
Statistics
Matches: 64, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 64 1.00
ACGTcount: A:0.10, C:0.31, G:0.18, T:0.41
Consensus pattern (41 bp):
GTCACGCGCATCCGTTTTCTTGCTGCATCCATTTTCTTGCT
Left flanking sequence: Indices 392178 -- 392677
TTTCGCTGACTGAATCCATCCATAAACCTAGACCGCGGTAACCTTCGTAACCAAAGCGTCACGAC
AACATCCAAAGGTCACCTTTGGGTTCTTAAGTAGGGGGGCAAGGAGGAGCACGTAGGAATGCCGA
CCACTACATAAGCCACTAGTGGCTGAGAGAAAGCGAGCAGCACCTTGTATAGGTTGGGCGGAGCT
TAAAGAAGCAAGCCCCTATCAGAGAAAGCCATTGCGCGCTAGCCTAGCTAGCTAACGTTTTTCAG
CTGGCTGTTATGTTAGTTGTAGCGCGCCTTCCCTCCAACAAGCAGCGGATGAGCGCACTAGCGCG
AAAGCCGTTGCGCAACAAGCAACGGCTCACTAGCGCGAAAGCCGTTGCGCAACAAGCAGCGGATG
AGCGCACTAGCGTGAAAGCCGTTGCGCAACAAGCAACGGCTCACTAGCGCGAAAGCCGTTGCGCA
ACAAGCAGCGGATGAGCGCACTAGCGTGAAAGCCGTTGCGCGTTA
Right flanking sequence: Indices 392784 -- 393283
CACTTTGGAAAGATTTTTCAGTATTTTCTTATGATGACCTGGTCGAGAGAGTACGATACATCGGT
GTAAAAGATTTCCTTTTTTCTGTGAGCTTGGTTTACTTGACCGAAGGGTGCAGTAGAACTTGAAG
GAGAGGAATAAATACCAGGTCTATAATTTTTACAAAAGGAGGACCGCTATTGGGAAATATCTTCT
TGGTCGTCATCAAAGAAGTTGACGTCCGGGGCTTCCTCTTTCCCTTTAAAATCAAAGCGGTGAAG
TCCATCCTAAAGTTCCAAATCTACATCCAACACCAGAGGTTCCTGATGAGAACAAATTGTAAGGC
GTTGAAAGAAACCCTTAAGAAAGATGTCAAGACCCTCTTTGACTTTGATATAGAACACATAAAGG
GGGAGAGTCACAGTCTCCCTTATTTCCTAACAATAAAATGCATTTTTGGAAAGGCCAGTAACAAT
GCGATATTCCATAGATAAGCAAGAAACTGAAGCCTCTCTTTTTAT
Found at i:392736 original size:24 final size:24
Alignment explanation
Indices: 392702--392783 Score: 88
Period size: 24 Copynumber: 3.7 Consensus size: 24
392692 TTTTCTTGCT
392702 GCATCCATTTTCTTGCTGTCACGC
1 GCATCCATTTTCTTGCTGTCACGC
*
392726 GCATCCGTTTTCTTGC--T-----
1 GCATCCATTTTCTTGCTGTCACGC
392743 GCATCCATTTTCTTGCTGTCACGC
1 GCATCCATTTTCTTGCTGTCACGC
* *
392767 GCATACGTTTTCTTGCT
1 GCATCCATTTTCTTGCT
392784 CACTTTGGAA
Statistics
Matches: 47, Mismatches: 4, Indels: 14
0.72 0.06 0.22
Matches are distributed among these distances:
17 15 0.32
19 1 0.02
22 1 0.02
24 30 0.64
ACGTcount: A:0.11, C:0.30, G:0.17, T:0.41
Consensus pattern (24 bp):
GCATCCATTTTCTTGCTGTCACGC
Left flanking sequence: Indices 392202 -- 392701
AACCTAGACCGCGGTAACCTTCGTAACCAAAGCGTCACGACAACATCCAAAGGTCACCTTTGGGT
TCTTAAGTAGGGGGGCAAGGAGGAGCACGTAGGAATGCCGACCACTACATAAGCCACTAGTGGCT
GAGAGAAAGCGAGCAGCACCTTGTATAGGTTGGGCGGAGCTTAAAGAAGCAAGCCCCTATCAGAG
AAAGCCATTGCGCGCTAGCCTAGCTAGCTAACGTTTTTCAGCTGGCTGTTATGTTAGTTGTAGCG
CGCCTTCCCTCCAACAAGCAGCGGATGAGCGCACTAGCGCGAAAGCCGTTGCGCAACAAGCAACG
GCTCACTAGCGCGAAAGCCGTTGCGCAACAAGCAGCGGATGAGCGCACTAGCGTGAAAGCCGTTG
CGCAACAAGCAACGGCTCACTAGCGCGAAAGCCGTTGCGCAACAAGCAGCGGATGAGCGCACTAG
CGTGAAAGCCGTTGCGCGTTAGTCACGCGCATCCGTTTTCTTGCT
Right flanking sequence: Indices 392784 -- 393283
CACTTTGGAAAGATTTTTCAGTATTTTCTTATGATGACCTGGTCGAGAGAGTACGATACATCGGT
GTAAAAGATTTCCTTTTTTCTGTGAGCTTGGTTTACTTGACCGAAGGGTGCAGTAGAACTTGAAG
GAGAGGAATAAATACCAGGTCTATAATTTTTACAAAAGGAGGACCGCTATTGGGAAATATCTTCT
TGGTCGTCATCAAAGAAGTTGACGTCCGGGGCTTCCTCTTTCCCTTTAAAATCAAAGCGGTGAAG
TCCATCCTAAAGTTCCAAATCTACATCCAACACCAGAGGTTCCTGATGAGAACAAATTGTAAGGC
GTTGAAAGAAACCCTTAAGAAAGATGTCAAGACCCTCTTTGACTTTGATATAGAACACATAAAGG
GGGAGAGTCACAGTCTCCCTTATTTCCTAACAATAAAATGCATTTTTGGAAAGGCCAGTAACAAT
GCGATATTCCATAGATAAGCAAGAAACTGAAGCCTCTCTTTTTAT
Found at i:394448 original size:30 final size:31
Alignment explanation
Indices: 394400--394457 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 31
394390 AGTGGTCAAC
*
394400 ACTCCTCTCCTTAACAGTCGAGTGGCTTGAA
1 ACTCCTCTCCTTAACAGTCAAGTGGCTTGAA
* *
394431 ACTCCTTTCCTT-GCAGTCAAGTGGCTT
1 ACTCCTCTCCTTAACAGTCAAGTGGCTT
394458 TCGCTCCTCT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
30 13 0.54
31 11 0.46
ACGTcount: A:0.19, C:0.29, G:0.19, T:0.33
Consensus pattern (31 bp):
ACTCCTCTCCTTAACAGTCAAGTGGCTTGAA
Left flanking sequence: Indices 393900 -- 394399
TAATCACCATCCCTTCCTCCAATGAGATTTTCTATGTTTATGTTTGGTCTTAGAATAAATGGAGT
GCTTGGTGAGACAGATAGCACTCTGATTATCAGAGAATAAAACGTACCTTGACTGCTCAAAGCCA
AGATCTCGAGTAAATTCCTTCATCCAAAGCAATTCTTTGGCACTTTCAGTTATAGCAATATATTC
AGCTTCTGCGGTGGACAAAGCTATACACTTCTGTAATCTAGACTGCCAAGAAAGAGCTCCCCCTG
CAAAAGTGATCAAATAACCGGAAGTGGATCTTAAATTGTCAAGATTACCTCCCAAATCAGAGTCT
GTGTAACAAAGAAGTTCAGGCTTGTCACTTCCAAAGCACAGCTTCAAATCGGCAGTACCTTTCAG
ATATCAACATATCCATTTTACCGAATTCCAATGTTCCTTTCCAACTTTATAGTCAAGCAAGTTCA
AATGGCTTTTCACGCCTCTCCTTACAATAAAGTCGAGTGGTCAAC
Right flanking sequence: Indices 394458 -- 394957
TCGCTCCTCTCTTTCCTTATAGTCAAGAGAGTTGCTTCGCTCCTTTCCTTGCTTATAGTCAAGCA
AGTGGCTTTCACGCCTGAAAGCGGCTTTCAACTCCTCTCAAACCTTATAGTCAAGAGAGTTGCTA
AAAACTCCTTTCCTTGCAGTCAAGTGGCTTTCGCTCCTCTCCAACTTTATAGTCAAGCAAGTGGC
TTTCAGCTCCTTTCCTTCTCCTCGCTCATTACTGTCAAAATGCAAAATGTTGAATTTCTTTTTTT
ACACTGGCGCAGATGATTTCCCCTAAGGCACCGATGGACCAACGCCTTCGTATGTATATCACCCG
AATTTCTTGATTCACGGCGTCGAGTATTTGCACTTTAGATCTCATGACTCGACCTGTAGACGGTG
ATACCGCCACCTTTGGCGACGTGATCTTTTCTTATTCACTTGTGCTGGTGGCGGAGAGGTCGGCG
CCTGTGTTCTGGCTCTGGGGGGGTGGGTCTTCCCTTTCTCAATTA
Found at i:394482 original size:33 final size:35
Alignment explanation
Indices: 394435--394520 Score: 86
Period size: 36 Copynumber: 2.5 Consensus size: 35
394425 CTTGAAACTC
** *
394435 CTTTCCTTGCAGTCAAGTG-GCT-TTCGCTCCTCT
1 CTTTCCTTATAGTCAAGAGAGCTCTTCGCTCCTCT
* *
394468 CTTTCCTTATAGTCAAGAGAGTTGCTTCGCTCCTTT
1 CTTTCCTTATAGTCAAGAGAGCT-CTTCGCTCCTCT
* *
394504 CCTTGCTTATAGTCAAG
1 CTTTCCTTATAGTCAAG
394521 CAAGTGGCTT
Statistics
Matches: 43, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
33 16 0.37
34 2 0.05
36 25 0.58
ACGTcount: A:0.15, C:0.28, G:0.17, T:0.40
Consensus pattern (35 bp):
CTTTCCTTATAGTCAAGAGAGCTCTTCGCTCCTCT
Left flanking sequence: Indices 393935 -- 394434
GTTTATGTTTGGTCTTAGAATAAATGGAGTGCTTGGTGAGACAGATAGCACTCTGATTATCAGAG
AATAAAACGTACCTTGACTGCTCAAAGCCAAGATCTCGAGTAAATTCCTTCATCCAAAGCAATTC
TTTGGCACTTTCAGTTATAGCAATATATTCAGCTTCTGCGGTGGACAAAGCTATACACTTCTGTA
ATCTAGACTGCCAAGAAAGAGCTCCCCCTGCAAAAGTGATCAAATAACCGGAAGTGGATCTTAAA
TTGTCAAGATTACCTCCCAAATCAGAGTCTGTGTAACAAAGAAGTTCAGGCTTGTCACTTCCAAA
GCACAGCTTCAAATCGGCAGTACCTTTCAGATATCAACATATCCATTTTACCGAATTCCAATGTT
CCTTTCCAACTTTATAGTCAAGCAAGTTCAAATGGCTTTTCACGCCTCTCCTTACAATAAAGTCG
AGTGGTCAACACTCCTCTCCTTAACAGTCGAGTGGCTTGAAACTC
Right flanking sequence: Indices 394521 -- 395020
CAAGTGGCTTTCACGCCTGAAAGCGGCTTTCAACTCCTCTCAAACCTTATAGTCAAGAGAGTTGC
TAAAAACTCCTTTCCTTGCAGTCAAGTGGCTTTCGCTCCTCTCCAACTTTATAGTCAAGCAAGTG
GCTTTCAGCTCCTTTCCTTCTCCTCGCTCATTACTGTCAAAATGCAAAATGTTGAATTTCTTTTT
TTACACTGGCGCAGATGATTTCCCCTAAGGCACCGATGGACCAACGCCTTCGTATGTATATCACC
CGAATTTCTTGATTCACGGCGTCGAGTATTTGCACTTTAGATCTCATGACTCGACCTGTAGACGG
TGATACCGCCACCTTTGGCGACGTGATCTTTTCTTATTCACTTGTGCTGGTGGCGGAGAGGTCGG
CGCCTGTGTTCTGGCTCTGGGGGGGTGGGTCTTCCCTTTCTCAATTATGACGTACTCGGTTAGGT
TGCCATCTAGGTCTCGGTCGGGGGCGACTTCCTAATTATGGTCGC
Found at i:396295 original size:33 final size:33
Alignment explanation
Indices: 396253--396324 Score: 144
Period size: 33 Copynumber: 2.2 Consensus size: 33
396243 AGACGGACAT
396253 CCTTTTACCGCAGTCTTCCCCTATTGGGCATAG
1 CCTTTTACCGCAGTCTTCCCCTATTGGGCATAG
396286 CCTTTTACCGCAGTCTTCCCCTATTGGGCATAG
1 CCTTTTACCGCAGTCTTCCCCTATTGGGCATAG
396319 CCTTTT
1 CCTTTT
396325 CTCCGTTAGG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 39 1.00
ACGTcount: A:0.14, C:0.33, G:0.17, T:0.36
Consensus pattern (33 bp):
CCTTTTACCGCAGTCTTCCCCTATTGGGCATAG
Left flanking sequence: Indices 395753 -- 396252
CCGCCGTGGGCTTGTAGCGACTGAATCTTGTTTCCGATAGAGCACCATTGATTGGTCTATTGGCA
AAGGAAACCCGGGAATTCAAGATTTTGTTCTGTCCTCCGGACATTTATTATGCTGTCACTACTGC
TTGTCAATTTGAATTGCATCAAAGCTCTCGTTCGAACTTCATATACGAGAATTCTAAACAAGAAC
TCGAGACTTGAAATGAATCCAAGTGGAGGTTCTTTCTCAGGGCGTAAGGAATAGCACGCAAAAGA
CAGCCTGGAAAGACAAAGACAGGATTTCAACATAAAAAGCGGTGGATGAGCGGTAATGGCTGGGG
AAGGGGGCAAGTACATCCTTTTGTTCTCAGTTCGTGGGAATTGCTTCCATCACTAACCAGTTCAG
CTCGGCTAGTGGGCTTTTGTGTTCGAAGGACCTGTTCGACAAGACCAGATCCATCAACAAACCTA
GGTCCAATATTTGCGTCTACGAGCTAGCCATCAACAGACGGACAT
Right flanking sequence: Indices 396325 -- 396824
CTCCGTTAGGCTCCTGTAAGGGCGGGTATGAGAAGGGTCCCCCTCTCCCTTGTCAAAGCTTAGTT
ATCCGTGAATGAGAACTCGTTTTGCTTGTTGGCTGGCTTATGATGCTTTCCTGTCCCAATTCAAC
ATATTCCTTTTTTTGCTCCTGCTTGGTAGCAGGCTTGTGTGCGAGCTTGGTCCGGTTTCGATTCC
TAAAGCCCACGGAGAAGGGTGTGGAGCCTCGCTTTCCATGCTGCTCCCCCTGCCAGTGTGTTGGC
GTCGATGAAGGTTTAAAGCCTCTTTCCTTCAACACCGAAAAGCTAGTAATTTTATGTATCTTCTT
GAGCGAGTGAAGTGCTTCACGGATGTGGAGCACGAACGCATAAAACTTTTTGCTTTTCCTTTCCC
TCCCTCGCTTACAGTTACTTCCAATTCCAACCAATTTCTAGTTAATGCACCCATAAGAACCCGAC
AATCCCCCGTATGGAGCCACCGTCGTTTCGTCTGCCATGTACTCT
Found at i:413241 original size:22 final size:22
Alignment explanation
Indices: 413213--413270 Score: 80
Period size: 22 Copynumber: 2.6 Consensus size: 22
413203 GCAACTAATT
**
413213 GAACTATTCTATTATTCAAATG
1 GAACTATGATATTATTCAAATG
* *
413235 GAACTATGATATTATTCTAATT
1 GAACTATGATATTATTCAAATG
413257 GAACTATGATATTA
1 GAACTATGATATTA
413271 GCCTATTCTC
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 32 1.00
ACGTcount: A:0.38, C:0.10, G:0.10, T:0.41
Consensus pattern (22 bp):
GAACTATGATATTATTCAAATG
Left flanking sequence: Indices 412713 -- 413212
CCTTCCTTCCTTTTGATTAGATGGATTATATCATCCAAGAGCTTAAACTAAGAGGAAAATACTTC
AAGGAACGAACTTGCAGGCCTTACCTTATACCTTACCTCAACGAAAAAAGCTAAGGAGAATGACG
ATTCCATGCCTTGTTATAATAGAATAGTTCAATTCGAATAGGCATATTTAATCAAAAGATCAATT
AACGCAGGTTGGGACATAGCACTATCAACAGTACGCCGGGCAAGAATCTCATTTTTTGGGGGGGA
AAGAAAGGGCGAGCTGGGGTGTTAATTTACCTACATTCTTATAGGACATTCTCTTTCAAGCTTAT
TCCGACCCTTAGCTGTCCTATTTATTCATACTCTGACGGGACTCGACTGCAAGGAAGAGGAATTC
CCATAGAAGGGACTCGACTGCAAGGTAGTTTACTCGCTTATATAAGGAAGAGGGGAATAAGAAGA
ACTGCTACTAATAGTTCTTTAATTAGAACTGCTACGCAACTAATT
Right flanking sequence: Indices 413271 -- 413770
GCCTATTCTCATTTCACTATTCTATTATTCTAATGGAACTATTCAATTATAAGCGTAGCTGTTCG
AATTGAACTATGATATTTGTTGCTACGCAGTTCTCATTGAACTATTCAATTTGTTGCTACGCTGT
TCTTCTTTTCAGCTCCTTTCTTTCCTTATAGTATAGTATAGTTATTGAACACCAACCCAATCTCG
ACTTTAAAGACTAAGAGGAGTGGGGAAGGTAGCGAAAACAAGCAAAAGAAAGGAGCGTTTAGACA
GAATAAAGGAGAGTTGCGTAGCTGTTCTCCTCTTTTCTTCTCTTAATCAATTACTTAAGCACAAG
AACGTCGACTTTATGTAGCAGGGAAAGGAGTTCCAGACTGCTCGCTTTTACTTACAGGAGAGGAA
AAGTAAAGACTGACTTGTTAGAGTAAGGAGAAAGACTGACTTGTTAGAGTAGCTTTCCACGCCCT
TCTGTTCTTCTTTCATCTCCTCTCCTTTTAGTCGAGCTTCTTTCA
Found at i:413375 original size:34 final size:34
Alignment explanation
Indices: 413337--413403 Score: 100
Period size: 34 Copynumber: 2.0 Consensus size: 34
413327 AGCTGTTCGA
*
413337 ATTGAACTA-TGATATTTGTTGCTACGCAGTTCTC
1 ATTGAACTATTCA-ATTTGTTGCTACGCAGTTCTC
*
413371 ATTGAACTATTCAATTTGTTGCTACGCTGTTCT
1 ATTGAACTATTCAATTTGTTGCTACGCAGTTCT
413404 TCTTTTCAGC
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
34 28 0.93
35 2 0.07
ACGTcount: A:0.22, C:0.18, G:0.16, T:0.43
Consensus pattern (34 bp):
ATTGAACTATTCAATTTGTTGCTACGCAGTTCTC
Left flanking sequence: Indices 412837 -- 413336
ATGACGATTCCATGCCTTGTTATAATAGAATAGTTCAATTCGAATAGGCATATTTAATCAAAAGA
TCAATTAACGCAGGTTGGGACATAGCACTATCAACAGTACGCCGGGCAAGAATCTCATTTTTTGG
GGGGGAAAGAAAGGGCGAGCTGGGGTGTTAATTTACCTACATTCTTATAGGACATTCTCTTTCAA
GCTTATTCCGACCCTTAGCTGTCCTATTTATTCATACTCTGACGGGACTCGACTGCAAGGAAGAG
GAATTCCCATAGAAGGGACTCGACTGCAAGGTAGTTTACTCGCTTATATAAGGAAGAGGGGAATA
AGAAGAACTGCTACTAATAGTTCTTTAATTAGAACTGCTACGCAACTAATTGAACTATTCTATTA
TTCAAATGGAACTATGATATTATTCTAATTGAACTATGATATTAGCCTATTCTCATTTCACTATT
CTATTATTCTAATGGAACTATTCAATTATAAGCGTAGCTGTTCGA
Right flanking sequence: Indices 413404 -- 413903
TCTTTTCAGCTCCTTTCTTTCCTTATAGTATAGTATAGTTATTGAACACCAACCCAATCTCGACT
TTAAAGACTAAGAGGAGTGGGGAAGGTAGCGAAAACAAGCAAAAGAAAGGAGCGTTTAGACAGAA
TAAAGGAGAGTTGCGTAGCTGTTCTCCTCTTTTCTTCTCTTAATCAATTACTTAAGCACAAGAAC
GTCGACTTTATGTAGCAGGGAAAGGAGTTCCAGACTGCTCGCTTTTACTTACAGGAGAGGAAAAG
TAAAGACTGACTTGTTAGAGTAAGGAGAAAGACTGACTTGTTAGAGTAGCTTTCCACGCCCTTCT
GTTCTTCTTTCATCTCCTCTCCTTTTAGTCGAGCTTCTTTCATCTCCTTCCTTTACGCAATTAGC
CTATTCTCATTTCACTATGATATTAGAACAAGGCATATTGGAAAGTACAATTCTAAGCGTAGCAG
TTCTAAGGCGAGTTGCTTTCACTCGTCTCATTTCCTTACTTCTTG
Found at i:413683 original size:26 final size:26
Alignment explanation
Indices: 413654--413709 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
413644 TACTTACAGG
413654 AGAGGAA-AAGTAAAGACTGACTTGTT
1 AGAGGAAGAAG-AAAGACTGACTTGTT
* *
413680 AGAGTAAGGAGAAAGACTGACTTGTT
1 AGAGGAAGAAGAAAGACTGACTTGTT
413706 AGAG
1 AGAG
413710 TAGCTTTCCA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
26 25 0.93
27 2 0.07
ACGTcount: A:0.41, C:0.07, G:0.30, T:0.21
Consensus pattern (26 bp):
AGAGGAAGAAGAAAGACTGACTTGTT
Left flanking sequence: Indices 413154 -- 413653
GGGGAATAAGAAGAACTGCTACTAATAGTTCTTTAATTAGAACTGCTACGCAACTAATTGAACTA
TTCTATTATTCAAATGGAACTATGATATTATTCTAATTGAACTATGATATTAGCCTATTCTCATT
TCACTATTCTATTATTCTAATGGAACTATTCAATTATAAGCGTAGCTGTTCGAATTGAACTATGA
TATTTGTTGCTACGCAGTTCTCATTGAACTATTCAATTTGTTGCTACGCTGTTCTTCTTTTCAGC
TCCTTTCTTTCCTTATAGTATAGTATAGTTATTGAACACCAACCCAATCTCGACTTTAAAGACTA
AGAGGAGTGGGGAAGGTAGCGAAAACAAGCAAAAGAAAGGAGCGTTTAGACAGAATAAAGGAGAG
TTGCGTAGCTGTTCTCCTCTTTTCTTCTCTTAATCAATTACTTAAGCACAAGAACGTCGACTTTA
TGTAGCAGGGAAAGGAGTTCCAGACTGCTCGCTTTTACTTACAGG
Right flanking sequence: Indices 413710 -- 414209
TAGCTTTCCACGCCCTTCTGTTCTTCTTTCATCTCCTCTCCTTTTAGTCGAGCTTCTTTCATCTC
CTTCCTTTACGCAATTAGCCTATTCTCATTTCACTATGATATTAGAACAAGGCATATTGGAAAGT
ACAATTCTAAGCGTAGCAGTTCTAAGGCGAGTTGCTTTCACTCGTCTCATTTCCTTACTTCTTGG
AACTCTCCAAAAAAGACTTACAGGAGAGGAAAAGTATGGAATATTAGAAGCGTAGCTACTATGAT
ATTAGAAGCGTAGCAGTTCTGCTTTCCACGCCTTTCCTTCCAACAAGTATAGTTGCCAACCTTGT
GGAATAGTTCAATTCGAACAGCGTAGCAATTAGCCTATTCTCATTTCACTTTTGTTAAGTAATTG
ATTATGATTAATCAAATCTCGACTTTAAAGACTTACAGGAGAGGAAAAGTATGGATTAGTTGAAA
GAGCTACTTCGTTCGAGCTTCATTACATCCACCCTCTCACTTCGT
Found at i:415885 original size:22 final size:22
Alignment explanation
Indices: 415859--415926 Score: 82
Period size: 22 Copynumber: 3.1 Consensus size: 22
415849 GCTACGCAAC
**
415859 TAATAGAATAGTTCAATTCTCA
1 TAATAGAATAGTTCAATTCGAA
** **
415881 TAATATCATAGTGAAATTCGAA
1 TAATAGAATAGTTCAATTCGAA
415903 TAATAGAATAGTTCAATTCGAA
1 TAATAGAATAGTTCAATTCGAA
415925 TA
1 TA
415927 GGCTAATATC
Statistics
Matches: 36, Mismatches: 10, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
22 36 1.00
ACGTcount: A:0.44, C:0.10, G:0.12, T:0.34
Consensus pattern (22 bp):
TAATAGAATAGTTCAATTCGAA
Left flanking sequence: Indices 415359 -- 415858
GGCTAAACGCTCCTACTTCAATTAAAGCTCGCCCTCCCTCACTAGAAGTCAGTTTTCCCACGTCC
GGTAGACTTTCTTTCTACAACCTTGACTTGAACTAATATCATAGTTCAATTAGTTGCGTAGCAGC
TGCGCGAAAGCCGTTGCGCCTTACTAAGCAAGAAAGGGCAAATTGAAGACTGAGAACAACTAATA
TCATAGTTCCATTCTCATAGGCATATTTGATGATGTCGCTTCATTCAATCCACCCTCGTTGGAAA
GCTAACACCCAATTTGCGATGCTTTTAAGCCCCCTTTCCGAACTCTAATGTGAGATTGGTAATGA
GGGAGGTTTAAGCCGTGTTAAATGTGCCGCAAATGGCCTTACTTCTTGCCTTCTAATAGAATCGT
TCAATTCTCATAGGCAAGAAGTAAGGAAATGAGACGAGACGCAACTACTAAGAAAGTAATCTCTT
AAGTAAAGGGTACTAATAGTTCTTTAATTAGAACTGCTACGCAAC
Right flanking sequence: Indices 415927 -- 416426
GGCTAATATCATAGTTCAATTCTCATAGGCATATTGGATCGAATAGGCATATTGGAAAGTACAAT
TTCGGTTTGAAACGTCGCATTTCTGCTTTTCAAAAGGGGCGAGGGCTGGTGGTGAAGGAAAGGGG
GAAGCGACTCGTTCCTTCCTTGCTTGTTAAAACTCCTTTCCTCTTCAAGCTAAACTCATTTGTCT
TTCACTTCATTGTGAAAGCGGGTTGAGTTCATACATTTTGAATGCTTGAAGAAGAAGATCGCTTT
AAAAGGAAAGGAGTGGAAAGAAACGAGACTGTAAGGAGAGGAGTGTTGAAGAACAGAGAGGAAGA
GGAGTGAAAGAAGAACAGAGAGGAAGAGGAGTGAAAGAAGAACAGAGAGGAAGAGGAGCGTAGCA
GTTCGAATTGAACTATTCCACAAGGAAGCAGAAAGCGGTTGCCGCCGAGGCTGTTTAAGTTGCCA
AGGCTGTAGCTGCAGATCTTGCCCTTCGTTCATAGTTCGCGGCTT
Found at i:416269 original size:27 final size:27
Alignment explanation
Indices: 416234--416309 Score: 152
Period size: 27 Copynumber: 2.8 Consensus size: 27
416224 GAGGAGTGTT
416234 GAAGAACAGAGAGGAAGAGGAGTGAAA
1 GAAGAACAGAGAGGAAGAGGAGTGAAA
416261 GAAGAACAGAGAGGAAGAGGAGTGAAA
1 GAAGAACAGAGAGGAAGAGGAGTGAAA
416288 GAAGAACAGAGAGGAAGAGGAG
1 GAAGAACAGAGAGGAAGAGGAG
416310 CGTAGCAGTT
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 49 1.00
ACGTcount: A:0.51, C:0.04, G:0.42, T:0.03
Consensus pattern (27 bp):
GAAGAACAGAGAGGAAGAGGAGTGAAA
Left flanking sequence: Indices 415734 -- 416233
TTCTAATAGAATCGTTCAATTCTCATAGGCAAGAAGTAAGGAAATGAGACGAGACGCAACTACTA
AGAAAGTAATCTCTTAAGTAAAGGGTACTAATAGTTCTTTAATTAGAACTGCTACGCAACTAATA
GAATAGTTCAATTCTCATAATATCATAGTGAAATTCGAATAATAGAATAGTTCAATTCGAATAGG
CTAATATCATAGTTCAATTCTCATAGGCATATTGGATCGAATAGGCATATTGGAAAGTACAATTT
CGGTTTGAAACGTCGCATTTCTGCTTTTCAAAAGGGGCGAGGGCTGGTGGTGAAGGAAAGGGGGA
AGCGACTCGTTCCTTCCTTGCTTGTTAAAACTCCTTTCCTCTTCAAGCTAAACTCATTTGTCTTT
CACTTCATTGTGAAAGCGGGTTGAGTTCATACATTTTGAATGCTTGAAGAAGAAGATCGCTTTAA
AAGGAAAGGAGTGGAAAGAAACGAGACTGTAAGGAGAGGAGTGTT
Right flanking sequence: Indices 416310 -- 416809
CGTAGCAGTTCGAATTGAACTATTCCACAAGGAAGCAGAAAGCGGTTGCCGCCGAGGCTGTTTAA
GTTGCCAAGGCTGTAGCTGCAGATCTTGCCCTTCGTTCATAGTTCGCGGCTTGTCTTCGCGCCTC
TCCTTATAGTAAGAGTTTTCTTAGAACAGCGCCCCTCTCCCTACAGTCGAGTAGCTTCGCCCCTC
ACATTCGTTCTCGTTCAAACAGCTTCGCCCCCGGTCGAGCTTCATTACGTCTACCCGGTCGAGCT
TCCTTCCCCTTTCGTCTTAACTACAACTACATTACGCAAGCTCCACCAATACCTATACCTACCTA
TAGAATAGAGTCACAAAAGTACCAGTGACGGTGACTTTGACGGTTTATGGATTCAGTCAGCTAAA
CTCCTCAATAAATATCAACAAACAACATGTCGTGACCGGTCTAGCTAAGTTTCCAAAGGTGAACA
GCCCCCTGTCCTTTATAGTCGTAAAGAGCTTCTCAGAAAAGTAAG
Found at i:417791 original size:22 final size:22
Alignment explanation
Indices: 417765--417854 Score: 128
Period size: 22 Copynumber: 4.1 Consensus size: 22
417755 GCTACGCAAC
* *
417765 TAATATCATAGTTCCATT-TGAA
1 TAATATCATAGTTCAATTCT-CA
**
417787 TAATAGAATAGTTCAATTCTCA
1 TAATATCATAGTTCAATTCTCA
417809 TAATATCATAGTTCAATTCTCA
1 TAATATCATAGTTCAATTCTCA
417831 TAATATCATAGTTCAATTCTCA
1 TAATATCATAGTTCAATTCTCA
417853 TA
1 TA
417855 GGCATAAAAG
Statistics
Matches: 61, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
22 60 0.98
23 1 0.02
ACGTcount: A:0.38, C:0.16, G:0.07, T:0.40
Consensus pattern (22 bp):
TAATATCATAGTTCAATTCTCA
Left flanking sequence: Indices 417265 -- 417764
TTCACGAACGGGTATCTCTTTAAAACAGCTACGCTTCTATACTTGTTGGAAGGAGCGAAAGCCAC
TTGACCGTAGGGAAAGGAGCTGAAAAGCGACTCGACTTACAGGAGAGGCGCGAAGCTGTTTGACT
TTATGTAGCAGGGAAAGGAGCTAAAAGCAACTCGATAGACTATAAGGGAAGAGAGGAGTGAAAGA
AGAATTGAGAACGGGAACCTCGTAGCTTTAAGATCGATCGGACTTGGCTTACCAATTAGAATAGG
CATATTTGATGACGAAGCGAAGCTACGAGTTCAGGGAAAAGGAGTAGGTTCGAAGTTCCTAGCCC
GGCTTGAAGCCAAGTTTCATTCTTTAACTGCTACATCAATTCCTTATAGTTCAAACTGGAATTCG
AGTTTCTAGTCTCGTTTCCGCTTAGAAGAAGATCGCTTTAAATGGAACGCCTTTCCAACTTCCGC
TCCGTTTTCCTTATAGTAAGAGTTTTCTTAGAACTGCTACGCAAC
Right flanking sequence: Indices 417855 -- 418354
GGCATAAAAGATGATGTCGCTTAGAATAGGCTTTCCACTCCTCTCCTTTACTATAAAGAAGGAAG
TTCCAAGCCGCTTGCTTGACTATAAAGTTTGGAGAGGAACGAAGTCACTTGACCGCAGGGAAAGA
AGCTGAAAGCAAAAAGACTTACAGGAGAGGGGCGTTTAGCTTAGAGAGAGGGGGCGAAAGGCGCG
AAGCTGCTTGACTGCAAGGAAAGGAGTGGAAAGCCTATTCGAATTGAACTATTCCGCAAGGAGAA
AGACTTACTTGTTAGAGGAAGGGAGTTTATTTCCTTACTCTAAGCGGAAGAAGAACAGCGTAGCT
TGCCTTAGCGCATCCCTTTTCATTTCATAAAAGCAAGTAAACTCCCTTTTCTTTTCATTAATGAC
GGAACGAAGGTAGCTCGAACGAATGTGAGAGGCGTGGAAGAAGCTTTAAAAGGAAAAGCGCGAAA
AGCAACTTGACTATAAACTTAGAACTGCTACGCAGTTCTAATTAA
Found at i:418931 original size:22 final size:22
Alignment explanation
Indices: 418887--418932 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 22
418877 GCTACGCAAC
***
418887 TAATAGAATAGTTCCATTAGAA
1 TAATAGAATAGTGAAATTAGAA
*
418909 TAATAGAATAGTGAAATTCGAA
1 TAATAGAATAGTGAAATTAGAA
418931 TA
1 TA
418933 GGCATATTTG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.48, C:0.07, G:0.15, T:0.30
Consensus pattern (22 bp):
TAATAGAATAGTGAAATTAGAA
Left flanking sequence: Indices 418387 -- 418886
TCTTCTGTGACCCTCGTCTGGGAAGCAATCCTTAAACTCATGGCACACTCACTATATCTATATAC
GTCAAACTTTGACGCCTTTCGAAAAAGCCACTCGTTTTTACTATAAGGAAAGGCGTTCCAATGTG
AGAGGTGCGGAGCCACTTTCCAGTTAAGGAGAGGAGTGTTGGCCGGTAACGAAACTAAACACGGG
TCTTACTTCCTTTTCTTTTCCCCCTTGAGAATCGATTTCAAACCGGTCCGGAAAGAGAATCCGCT
TTCATCTGACCTTCGAAACTCTCTTCTCATACTCCTCGTTGAGTCTTTCTATTTAGAGAGAGGAG
CGGAGCCACTCGAACGAATGTGAGAGGGGGCGAAAGAAGAACAGCTACGCTTCTAATATCATAGT
TCAATTCTCATAGGCAAGAAGTAAGGAAATGAGACGAGACGCAACTACTAAGAAAGTAATCTCTT
AAGTAAAGGGTACTAATAGTTCTTTAATTAGAACTGCTACGCAAC
Right flanking sequence: Indices 418933 -- 419432
GGCATATTTGATGATGTCGCTTCCGGTATAAGCGATGGTCCGGGCTGGGCTATAGTAGTTGCTAA
AGGCGCTAAAGCGATGGTCCGGGCAGAAAAGATCAATGAAAGACTAGAGCGCGAGCTAGCTGATC
TACCGACAAGTCCTTGATTTCTTATCCGCGAAGTCAGATAGTTCTTTCTTGCTTTCTCCTACTCT
TTCTTTATCGTATTATAAAGAACTTGCCTTCCTTGGCTACTAAAGACTGTAAGGAGTTCCAAGCA
ACGAGACTGCTAAGGAGTGGAAAGCAACGAGACTATAAACTTAGAAGCGTAGCTGTTCGAATGGA
ACTATTCTCCTATTCGAATTGAACGATTCTATTAGTTTCACTATTCTCCTATTCTCATTTCAGTT
TTGTTAAGGCCTATGAACTGGAATTGAATATTCTTAATCGTATTATAAATCACTTGCCTTCCTGT
GTTGCTAAGGGAAAATGAAGAACAGGAGCGAAAAGACACTTGACT
Found at i:419199 original size:25 final size:26
Alignment explanation
Indices: 419171--419226 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
419161 TGGCTACTAA
* *
419171 AGACTG-TAAGGAGTTCCAAGCAACG
1 AGACTGCTAAGGAGTGCAAAGCAACG
*
419196 AGACTGCTAAGGAGTGGAAAGCAACG
1 AGACTGCTAAGGAGTGCAAAGCAACG
419222 AGACT
1 AGACT
419227 ATAAACTTAG
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
25 6 0.22
26 21 0.78
ACGTcount: A:0.38, C:0.18, G:0.30, T:0.14
Consensus pattern (26 bp):
AGACTGCTAAGGAGTGCAAAGCAACG
Left flanking sequence: Indices 418671 -- 419170
TCTCATACTCCTCGTTGAGTCTTTCTATTTAGAGAGAGGAGCGGAGCCACTCGAACGAATGTGAG
AGGGGGCGAAAGAAGAACAGCTACGCTTCTAATATCATAGTTCAATTCTCATAGGCAAGAAGTAA
GGAAATGAGACGAGACGCAACTACTAAGAAAGTAATCTCTTAAGTAAAGGGTACTAATAGTTCTT
TAATTAGAACTGCTACGCAACTAATAGAATAGTTCCATTAGAATAATAGAATAGTGAAATTCGAA
TAGGCATATTTGATGATGTCGCTTCCGGTATAAGCGATGGTCCGGGCTGGGCTATAGTAGTTGCT
AAAGGCGCTAAAGCGATGGTCCGGGCAGAAAAGATCAATGAAAGACTAGAGCGCGAGCTAGCTGA
TCTACCGACAAGTCCTTGATTTCTTATCCGCGAAGTCAGATAGTTCTTTCTTGCTTTCTCCTACT
CTTTCTTTATCGTATTATAAAGAACTTGCCTTCCTTGGCTACTAA
Right flanking sequence: Indices 419227 -- 419726
ATAAACTTAGAAGCGTAGCTGTTCGAATGGAACTATTCTCCTATTCGAATTGAACGATTCTATTA
GTTTCACTATTCTCCTATTCTCATTTCAGTTTTGTTAAGGCCTATGAACTGGAATTGAATATTCT
TAATCGTATTATAAATCACTTGCCTTCCTGTGTTGCTAAGGGAAAATGAAGAACAGGAGCGAAAA
GACACTTGACTTACAGGAGTTCCAAGCAACGAGACTGTAAGGAGTGGAAAGAAGAACAGCGTAGC
AGTTCCCCTTTCTCCTATTCTCATTTCACTAGACGAATGTTCGAGGAGTTCCAAGCCTTGTTCGA
ATTGAATAGTTCCACAAGGAGAAAGACTTACAGGAGTTCCAAGCAACGAGACTGCTAAGGAAAGA
GAGTTGCTACGCTGTTCTCATTGAACTATTCTCCTATTCTCATTTCACTATTCGAATGTGAGAGG
AGTGAAAGCTACTTTCCTGTACTTGACTTACAGGAGTGGAAAGAA
Found at i:419964 original size:15 final size:15
Alignment explanation
Indices: 419944--419972 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
419934 TTAAGTATTA
419944 GAAGCGTATTAGAAG
1 GAAGCGTATTAGAAG
419959 GAAGCGTATTAGAA
1 GAAGCGTATTAGAA
419973 CTATGATATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.41, C:0.07, G:0.31, T:0.21
Consensus pattern (15 bp):
GAAGCGTATTAGAAG
Left flanking sequence: Indices 419444 -- 419943
CAAGCAACGAGACTGTAAGGAGTGGAAAGAAGAACAGCGTAGCAGTTCCCCTTTCTCCTATTCTC
ATTTCACTAGACGAATGTTCGAGGAGTTCCAAGCCTTGTTCGAATTGAATAGTTCCACAAGGAGA
AAGACTTACAGGAGTTCCAAGCAACGAGACTGCTAAGGAAAGAGAGTTGCTACGCTGTTCTCATT
GAACTATTCTCCTATTCTCATTTCACTATTCGAATGTGAGAGGAGTGAAAGCTACTTTCCTGTAC
TTGACTTACAGGAGTGGAAAGAAGCTTTAAAATGAAGTGAGAGGAGCTACGCAGTTTGAACTATT
CAATTCTAAGCGTAGCAGTTCCCCTTTCTCCTATTCTCTCTGTCTCGTTGCGTAGCAGTTCTCAT
TTCACTTTCATTTCATATTCTTAATCGTATTATAAATCACTTGCCTTCCTTAGAGACTGTAAGGA
GTGGAAAGCAACGAGACTGTAAGGAGTTCCAAGCTTTAAGTATTA
Right flanking sequence: Indices 419973 -- 420472
CTATGATATTTGTTGCGTAGCTGTTCTCATAGAATAGTTCAATTAGTTGCTACGCTGTTCTAAGA
AAACTATTAGTAGCAGTTCTTCTTATTCCCCTCTCCTTCCTATAATAATAGAAGCGAAGCAGCTT
GAACGAGACTGTAAGGAGTGGAAAGAAACTCGAGCGAATGCGAGAGGAGTGGAAAGCTTTAAGTA
TGATAAGCGTAGCAGTTCTCATTGATTATTATTAATCGTATTATAAAGAACTTGCCTTCCTGTGT
TGCTAAGTTTATAGTAAGGAAAGAGAGGCGTAGAAGCAACTTGACTGTAAGGGTTTCCGCTACGC
TGTTCTCATAGAATAGTTCAATTTGTTGCTACGCAGTTCGAATCAGGTATGAAGAGGGAAAGAGA
GGCGCGGAAAGAAGAACAAGGGTTGGAGCTACGCAACTACACTTGTTGGAAGGGTTGGAGCGTAG
CAGTTCTCATTTCCCCTTTCTCCTATTCTCATTGAACGAAAAGGG
Found at i:421199 original size:32 final size:32
Alignment explanation
Indices: 421175--421240 Score: 132
Period size: 32 Copynumber: 2.1 Consensus size: 32
421165 ACGTTGCGTA
421175 GCAGTTCTAATTAAAGAACTAGACGAAGCTAC
1 GCAGTTCTAATTAAAGAACTAGACGAAGCTAC
421207 GCAGTTCTAATTAAAGAACTAGACGAAGCTAC
1 GCAGTTCTAATTAAAGAACTAGACGAAGCTAC
421239 GC
1 GC
421241 TATAGTAAAG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.39, C:0.20, G:0.20, T:0.21
Consensus pattern (32 bp):
GCAGTTCTAATTAAAGAACTAGACGAAGCTAC
Left flanking sequence: Indices 420675 -- 421174
AAAAGACTGTAAGTCGAGTTGCTGAAGCGACATCATCTCATTGAACGTAGATATTTGTTGCTACG
CAGTTCGAATCAGGTATGAAGAGGGAAAGGAGCTAAAAGCAGCTCGAGCGAATGCGAGAGGAGCT
AAAAGCAAAAAGACTGTAAGTCGAGTTGCTACGCTCAGTCGAGTTGCTACGCAGTTCTCATTTCC
CCTTTCTCCTATTCGAATTGAACTATTCCACAAGGAGAAAGACTTACAGTCGAGTTGCTACGCTG
TTCTGCTTTCCACGCCTTTCCTTCCTTAAAGTTAATACATTTCTTATTCTTTATCGTATTATAAA
GAACTTGCCTTCCTTGGCTACTAAAGAACTTGCCTTCCTTGTTCTCAATTAGTCGGTGAGTTGGC
TTCACTTCCGGGGACCGGCCCAGCCTTGAAAGTCAGGGAAAGGGCGCTACTGGGCGGAAGCTACT
CTGTTATCTCACGTTCTTCATGAGGACGAAGCCAGACGTTGCGTA
Right flanking sequence: Indices 421241 -- 421740
TATAGTAAAGTAGCGTTATTGAACACCAACCAAATCTCGACAAAAAACACTGTAAGGAGAGGAAA
AGTATGGATTAGAAGCGTAGCTGTTCTAAGGAGAGTTGCTACGCTGTTCTCCTCTTTTCTTCTCT
TAATCAATTATCAATTGAGAGTTAGAAAATGATAACACAAAAATGCATTGTGGAATAGTTCAATT
CGAATAATAGAATAGTGAAATGAGAATAGGCTAGATGTCGCTACCTTCGTTCCTCATTAATGAAA
AGAAAAGGAAGCGACATCATCAAATATGCCTATTCTAATAGAACTATTCTATTAGTTGCGTAGCA
GTTCTTCTTTCTTCTATATAGTTCTAAGGAGAGTTGCGTAGCAGTTCTTCTTTACGATATTACTT
AAGTGGCGTAGCTGTTCTTCTTTCCGCTCCGAACGCCTAGACGACGTTTTTCTTCCTAATACTAA
TAGTAATGGAGACCAGGAAAGAGGGAAGCTTCAGTCAGCCTTAAG
Found at i:427197 original size:23 final size:23
Alignment explanation
Indices: 427169--427216 Score: 78
Period size: 23 Copynumber: 2.1 Consensus size: 23
427159 AACTTGTAAA
*
427169 GCAACTCGCCTTCGAACTGCTAC
1 GCAACTCGCCTTAGAACTGCTAC
*
427192 GCAACTCTCCTTAGAACTGCTAC
1 GCAACTCGCCTTAGAACTGCTAC
427215 GC
1 GC
427217 CATCCTCTCC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.23, C:0.38, G:0.17, T:0.23
Consensus pattern (23 bp):
GCAACTCGCCTTAGAACTGCTAC
Left flanking sequence: Indices 426669 -- 427168
AAAGGGGTAAAGCAACTCGACTGTAAGGAGAGGGGCGTAGCAGCTGCGCGAAAGCCGTTTGAACT
CGCTTTCCTATAAGTAAGGAGAGGGGCGAAAAGCGACTCTCCTGTAAGTCTCGTTGCTTCGCTGT
TCTAAGTCTCGTTGATGAGCTAATACGGGAATCGCTTTTGCTTTCTTTTCCCTACTTCGAATGAT
AGAACGATTCGAAAGGGGCATACTCATATATAAAATTGCCTAACAGGGGCTGACGAGGGAAAAAA
GGGGGAAAGAAAGGGCGTTCCATGCCTTGTTCTAATAGAATAGTGAAATTCGAACTGCGTAGCAA
CTATACTATAAACTTAGAACTGCTACGCCACTTTCCTGCGCTGAAAAGCCGCTTTCAGGCGTGGA
AGCTACTTGCTACATGAGGGACATTTAACACGGCTTAAACCTCCCGCAAATGGCCTTTGGAAGAA
GAGAGCGGCTAAGGGCGAGAAGCAACGAGACTATAAACTTGTAAA
Right flanking sequence: Indices 427217 -- 427716
CATCCTCTCCATCCGCTTCCTTTTCCCTCTCCCTTACGGTCGAGCTGAATTACATCCACCCGGGA
GAGGAGTGGGGAAGGGCGTTCCATGGGAGAGGAGCGTTTAGCGGCTCGACTTACACTTCAGGTTC
GGGGAGCGGAGCCACTCGACTATAAGGAAAGGAGTGGAAGAAGAACAGCGTTCCAATGTGAGAGG
AGCTTTGAAGTGGGAATTCTTCCTTTGAAGGGCGTTCCATGCCTTGTTCTAATAGAATAGTGAAA
TTCGAATAGGCTAATAGTGAAATTCGAACTGCTACGCTGTTCTAATAGAATAGTCTCGTTCAAGC
AGCTTCACTCCTTTCCTTACAGGAAAGCTTCTTCACTTTCGGCTAAGCGATTTTCCGCTTCCGCC
CCGAACCACATTTTCTAAACGAACCAGAGCCAATCCGAATAAAAAGAAATAAAGAGATTAGACAA
GACAACCAAAAACCATTGAAAGAAGAAAGCAAAACTACAATTTAC
Found at i:428663 original size:29 final size:29
Alignment explanation
Indices: 428621--428732 Score: 224
Period size: 29 Copynumber: 3.9 Consensus size: 29
428611 TAGACGTAAT
428621 GAAGCTCGACCTACAGGGAGAGGGAGGAG
1 GAAGCTCGACCTACAGGGAGAGGGAGGAG
428650 GAAGCTCGACCTACAGGGAGAGGGAGGAG
1 GAAGCTCGACCTACAGGGAGAGGGAGGAG
428679 GAAGCTCGACCTACAGGGAGAGGGAGGAG
1 GAAGCTCGACCTACAGGGAGAGGGAGGAG
428708 GAAGCTCGACCTACAGGGAGAGGGA
1 GAAGCTCGACCTACAGGGAGAGGGA
428733 AAAGGTAGTT
Statistics
Matches: 83, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 83 1.00
ACGTcount: A:0.31, C:0.18, G:0.44, T:0.07
Consensus pattern (29 bp):
GAAGCTCGACCTACAGGGAGAGGGAGGAG
Left flanking sequence: Indices 428121 -- 428620
TGGGGTGTTAGCTTTCCAGTCTATTAGAATAGGGCATGGAACGCCTCTCTTTACAGTCTCGTTCA
AGCAGCTTCGCGCCTCTCCTTCCACTGATTGTTCGGGGAGCTGAAAGAAGAACAGGAACGAACGA
AGGAAGCGACATCGGGAAGGGATAGGGATAGCGCATTTGCTTGGTTGGGGCATTCGAGTCGAGCA
GCTTTCGTTCCTCTCACATTCGTTCGAGCTTCCTTACTCCTCGTTGGACACCCAATTTGCGATGC
TTTTAAGCCCACTTGACGAACTCTAATCTACGATTGGTCATGAGGGAGGGTTAAGCCGCGTTAAA
TGCCCCGGAAATGGGCTGTTAGCTTTCCAACGAGGAGAGGAGCGGAAAAGACATAAAAAGGAGCG
GCGCGAAGCTGTTTGACTTTATTCCGCAGGGAGAGGAAAAGTATGGATTAGTTGAAAGAGCTACT
TCGTTCGAGCGTTATTCAATCCTCCCGGGAGAGGTTAGACGTAAT
Right flanking sequence: Indices 428733 -- 429232
AAAGGTAGTTTACTTGCTTACTTGTTAGAGTTAGGAAGTAAGACCCGTGTGAAGCTGCGATTCCC
GTATTAGAACGAGACTTACAGGAGAGGGGCGAATTCTTGCTCATAAAACACTTCCAAGGCGCTCC
AGCCACTCGCTTTTACTTACAGGAGAGGGGTGTTGACGCTCTTAAGACTATAAGGAAAGAGAGGA
ACGAAAGCCGCTTTCAGGAGTGTTGACCGCTCTTAAAGGCGTTCCAGCCACTTTACTATAAAAGG
AGAGGCGCGAAGCTGCTTGAACGAGACTTACAGGGGAGGCGCGAAGCCACTTTCCTGCTAAGGGA
AGGCGCTGAAAAGAAGAACAGCGAAGCAACGAGACTTGTTGGAAGGAGAGGCGTGAAAGGAAGGG
CGTTCCCTGCCTTGAACTAATAGAATAGTTCCATTATCATAGGCATATTGGAAAGTAAGTCGATA
AAGCGATTTACGCAGCTGTGTCACCAGAAAGAGAATTAGATCTAA
Found at i:429370 original size:23 final size:23
Alignment explanation
Indices: 429338--429416 Score: 85
Period size: 23 Copynumber: 3.6 Consensus size: 23
429328 GAGTGAAAGA
429338 AGAACAGCTACGCAACTCTCCTT
1 AGAACAGCTACGCAACTCTCCTT
* *
429361 AGAACTGCTACG---CTC-CAATT
1 AGAACAGCTACGCAACTCTC-CTT
*
429381 CGAACAGCTACGCAACTCTCCTT
1 AGAACAGCTACGCAACTCTCCTT
*
429404 AGAACTGCTACGC
1 AGAACAGCTACGC
429417 TTCTATTATT
Statistics
Matches: 44, Mismatches: 7, Indels: 10
0.72 0.11 0.16
Matches are distributed among these distances:
19 1 0.02
20 15 0.34
23 27 0.61
24 1 0.02
ACGTcount: A:0.29, C:0.34, G:0.15, T:0.22
Consensus pattern (23 bp):
AGAACAGCTACGCAACTCTCCTT
Left flanking sequence: Indices 428838 -- 429337
TCATAAAACACTTCCAAGGCGCTCCAGCCACTCGCTTTTACTTACAGGAGAGGGGTGTTGACGCT
CTTAAGACTATAAGGAAAGAGAGGAACGAAAGCCGCTTTCAGGAGTGTTGACCGCTCTTAAAGGC
GTTCCAGCCACTTTACTATAAAAGGAGAGGCGCGAAGCTGCTTGAACGAGACTTACAGGGGAGGC
GCGAAGCCACTTTCCTGCTAAGGGAAGGCGCTGAAAAGAAGAACAGCGAAGCAACGAGACTTGTT
GGAAGGAGAGGCGTGAAAGGAAGGGCGTTCCCTGCCTTGAACTAATAGAATAGTTCCATTATCAT
AGGCATATTGGAAAGTAAGTCGATAAAGCGATTTACGCAGCTGTGTCACCAGAAAGAGAATTAGA
TCTAATCTCGTCAAGTGGGCTTAAAAGCATCGGAAATTCTCTTCATCACGAGACTGATCGGAAAC
CTTTCCCAAGAAAGACTTTATTCTAAAAAGGAGAGGAGTGAAAGA
Right flanking sequence: Indices 429417 -- 429916
TTCTATTATTACTTGTGTTATCATTTTCTAACAATTGCTTTTGTTAAGTAATTTCTTATTCTTTC
TTTTCCCACGGAGCGCTAAGAAGCAAGGGCGTAGCGAGACTGGGGATCTTAGTCTCAATCCTAAC
CTCATAGCTTTTAGAAGCTAAGCAAGTCCAGTGCTACAGGCTTTTTTCGACAAAAATAAGAGGAA
AAGGACCCGGCTTTAGGACCATCGTCTAATTCAAAGTCTTCCGCATATTCGATTACGTTACAAAA
GCCCTATTCTGAGCGGACCTTCTTTCTATTCCTGGCTTGGGGGCTTCGCTTGGTAAGGAAGATTT
GTTTGCTTGGCCGGGAGCGGAAGACTGCATCCGATGGTTCTTATTCTGCCCTTTCCCTTCTCTTC
TTATATCAACTGAACATCCTAAACACCAAAAGGAAGGGAGAAGCAAACTCGACCAGGTGGTTTTT
GATCATTTTATTGACGAGATTTTCAATGAAAGCTGAGATGGGGTA
Found at i:433932 original size:22 final size:22
Alignment explanation
Indices: 433906--433952 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
433896 TCTTCTTGCC
* *
433906 TATTCGAATTGAACTATTCTAT
1 TATTCGAATGGAACTATTCAAT
*
433928 TATTCTAATGGAACTATTCAAT
1 TATTCGAATGGAACTATTCAAT
433950 TAT
1 TAT
433953 AAGCGTAGCT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.34, C:0.13, G:0.09, T:0.45
Consensus pattern (22 bp):
TATTCGAATGGAACTATTCAAT
Left flanking sequence: Indices 433406 -- 433905
TTCAATGCCCCTAGTCAGTAGGCGAGCGCTAAAAGCGCGCTGAGTGAGTGGCCTTTTTCGTGCTT
CTAAACTTCTAAACTCGCGAGTTTAGTTTGGAGCTTGTGTGTTAGGAAAGAGCCTGCGTGCCTGT
TTATTTTATTTGCCTTAAACACCGCGCTATTGAGCGTATAGAGCTTTTTAGAGTTGAGCTAAGGG
GGCTGCCAGCCCTAAATATATATATATATATGGCTTTTGATTGTCTTGTCTCGCCATAACAAGCT
GTGAGCTAGATGGGCCCGAACCTGCTCCTGCTCTTTGGGGTTCAACATTGTCTGTGGGGTGGATA
TGGAAAACTACTTTAAACTGGCGCATGTCCCTTAGTTCAAGAAGGTGGACACAGCATTGCTCTGG
GGATAGATGCGTATGGTATAGGAATCGGGAAGAGAAGATCCAAGCCTTCCACGGATCACGAACTG
GAGTGATCCACAGACTCTGCTCCTATTTCAAATGCTCTTCTTGCC
Right flanking sequence: Indices 433953 -- 434452
AAGCGTAGCTGTTCGAATTGAACTATGATATTTGTTGCTACGCAGTTCTCATTGAACTATTCAAT
TTGTTGCTACGCTGTTCTTCTTTTCAGCTCCTTTCTTTCCTTATAGTATAGTATAGTTATTGAAC
ACCAACCCAATCTCGACTTTAAAGACTAAGAGGAGTGGGGAAGGTAGCGAAAACAAGCAAAAGAA
AGGAGCGTTTAGACAGAATAAAGGAGAGTTGCGTAGCTGTTCTCCTCTTTTCTTCTCTTAATCAA
TTACTTAAGCACAAGAACGTCGACTTTATGTAGCAGGGAAAGGAGTTCCAGACTGCTCGCTTTTA
CTTACAGGAGAGGAAAAGTAAAGACTGACTTGTTAGAGTAAGGAGAAAGACTGACTTGTTAGAGT
AGCTTTCCACGCCCTTCTGTTCTTCTTTCATCTCCTCTCCTTTTAGTCGAGCTTCTTTCATCTCC
TTCCTTTACGCAATTAGCCTATTCTCATTTCACTATGATATTAGA
Found at i:434007 original size:34 final size:34
Alignment explanation
Indices: 433969--434035 Score: 100
Period size: 34 Copynumber: 2.0 Consensus size: 34
433959 AGCTGTTCGA
*
433969 ATTGAACTA-TGATATTTGTTGCTACGCAGTTCTC
1 ATTGAACTATTCA-ATTTGTTGCTACGCAGTTCTC
*
434003 ATTGAACTATTCAATTTGTTGCTACGCTGTTCT
1 ATTGAACTATTCAATTTGTTGCTACGCAGTTCT
434036 TCTTTTCAGC
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
34 28 0.93
35 2 0.07
ACGTcount: A:0.22, C:0.18, G:0.16, T:0.43
Consensus pattern (34 bp):
ATTGAACTATTCAATTTGTTGCTACGCAGTTCTC
Left flanking sequence: Indices 433469 -- 433968
TTCTAAACTTCTAAACTCGCGAGTTTAGTTTGGAGCTTGTGTGTTAGGAAAGAGCCTGCGTGCCT
GTTTATTTTATTTGCCTTAAACACCGCGCTATTGAGCGTATAGAGCTTTTTAGAGTTGAGCTAAG
GGGGCTGCCAGCCCTAAATATATATATATATATGGCTTTTGATTGTCTTGTCTCGCCATAACAAG
CTGTGAGCTAGATGGGCCCGAACCTGCTCCTGCTCTTTGGGGTTCAACATTGTCTGTGGGGTGGA
TATGGAAAACTACTTTAAACTGGCGCATGTCCCTTAGTTCAAGAAGGTGGACACAGCATTGCTCT
GGGGATAGATGCGTATGGTATAGGAATCGGGAAGAGAAGATCCAAGCCTTCCACGGATCACGAAC
TGGAGTGATCCACAGACTCTGCTCCTATTTCAAATGCTCTTCTTGCCTATTCGAATTGAACTATT
CTATTATTCTAATGGAACTATTCAATTATAAGCGTAGCTGTTCGA
Right flanking sequence: Indices 434036 -- 434535
TCTTTTCAGCTCCTTTCTTTCCTTATAGTATAGTATAGTTATTGAACACCAACCCAATCTCGACT
TTAAAGACTAAGAGGAGTGGGGAAGGTAGCGAAAACAAGCAAAAGAAAGGAGCGTTTAGACAGAA
TAAAGGAGAGTTGCGTAGCTGTTCTCCTCTTTTCTTCTCTTAATCAATTACTTAAGCACAAGAAC
GTCGACTTTATGTAGCAGGGAAAGGAGTTCCAGACTGCTCGCTTTTACTTACAGGAGAGGAAAAG
TAAAGACTGACTTGTTAGAGTAAGGAGAAAGACTGACTTGTTAGAGTAGCTTTCCACGCCCTTCT
GTTCTTCTTTCATCTCCTCTCCTTTTAGTCGAGCTTCTTTCATCTCCTTCCTTTACGCAATTAGC
CTATTCTCATTTCACTATGATATTAGAACAAGGCATATTGGAAAGTACAATTCTAAGCGTAGCAG
TTCTAAGGCGAGTTGCTTTCACTCGTCTCATTTCCTTACTTCTTG
Found at i:434315 original size:26 final size:26
Alignment explanation
Indices: 434286--434341 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
434276 TACTTACAGG
434286 AGAGGAA-AAGTAAAGACTGACTTGTT
1 AGAGGAAGAAG-AAAGACTGACTTGTT
* *
434312 AGAGTAAGGAGAAAGACTGACTTGTT
1 AGAGGAAGAAGAAAGACTGACTTGTT
434338 AGAG
1 AGAG
434342 TAGCTTTCCA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
26 25 0.93
27 2 0.07
ACGTcount: A:0.41, C:0.07, G:0.30, T:0.21
Consensus pattern (26 bp):
AGAGGAAGAAGAAAGACTGACTTGTT
Left flanking sequence: Indices 433786 -- 434285
ATTGCTCTGGGGATAGATGCGTATGGTATAGGAATCGGGAAGAGAAGATCCAAGCCTTCCACGGA
TCACGAACTGGAGTGATCCACAGACTCTGCTCCTATTTCAAATGCTCTTCTTGCCTATTCGAATT
GAACTATTCTATTATTCTAATGGAACTATTCAATTATAAGCGTAGCTGTTCGAATTGAACTATGA
TATTTGTTGCTACGCAGTTCTCATTGAACTATTCAATTTGTTGCTACGCTGTTCTTCTTTTCAGC
TCCTTTCTTTCCTTATAGTATAGTATAGTTATTGAACACCAACCCAATCTCGACTTTAAAGACTA
AGAGGAGTGGGGAAGGTAGCGAAAACAAGCAAAAGAAAGGAGCGTTTAGACAGAATAAAGGAGAG
TTGCGTAGCTGTTCTCCTCTTTTCTTCTCTTAATCAATTACTTAAGCACAAGAACGTCGACTTTA
TGTAGCAGGGAAAGGAGTTCCAGACTGCTCGCTTTTACTTACAGG
Right flanking sequence: Indices 434342 -- 434841
TAGCTTTCCACGCCCTTCTGTTCTTCTTTCATCTCCTCTCCTTTTAGTCGAGCTTCTTTCATCTC
CTTCCTTTACGCAATTAGCCTATTCTCATTTCACTATGATATTAGAACAAGGCATATTGGAAAGT
ACAATTCTAAGCGTAGCAGTTCTAAGGCGAGTTGCTTTCACTCGTCTCATTTCCTTACTTCTTGG
AACTCTCCAAAAAAGACTTACAGGAGAGGAAAAGTATGGAATATTAGAAGCGTAGCTACTATGAT
ATTAGAAGCGTAGCAGTTCTGCTTTCCACGCCTTTCCTTCCAACAAGTATAGTTGCCAACCTTGT
GGAATAGTTCAATTCGAACAGCGTAGCAATTAGCCTATTCTCATTTCACTTTTGTTAAGTAATTG
ATTATGATTAATCAAATCTCGACTTTAAAGACTTACAGGAGAGGAAAAGTATGGATTAGTTGAAA
GAGCTACTTCGTTCGAGCTTCATTACATCCACCCTCTCACTTCGT
Done.