Specifications
==============

Sequence source file: "/mnt/biodata02/home/xyzhang/pmgdraw-test/test_set/outdir_mt3/NC_065220.1/NC_065220/Repetitive_sequence/123.misa.ini"

Definement of microsatellites (unit size / minimum number of repeats):
(1/10) (2/6) (3/5) (4/5) (5/5) (6/5) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              1
Total size of examined sequences (bp):           473561
Total number of identified SSRs:                 59
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    3


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	47
2	7
3	5

Frequency of identified SSR motifs
----------------------------------

Repeats	5	6	7	8	9	10	11	12	13	14	total
A	-	-	-	-	-	7	6	2	2	1	18
C	-	-	-	-	-	1	2				3
G	-	-	-	-	-	3					3
T	-	-	-	-	-	11	7	3	2		23
AG	-	1									1
AT	-		1	1							2
GA	-		1								1
TA	-	1									1
TC	-	2									2
AAC	1										1
ACT	1										1
ATA			1								1
CAA	1										1
GAA	1										1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	5	6	7	8	9	10	11	12	13	14	total
A/T	-	-	-	-	-	18	13	5	4	1	41
C/G	-	-	-	-	-	4	2				6
AG/CT	-	3	1								4
AT/AT	-	1	1	1							3
AAC/GTT	2										2
AAG/CTT	1										1
AAT/ATT			1								1
ACT/AGT	1										1