Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_016740
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 715001
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.27
Found at i:699 original size:20 final size:20
Alignment explanation
Indices: 670--715 Score: 85
Period size: 20 Copynumber: 2.4 Consensus size: 20
660 CTTATTTTTT
670 CAAT-AATCCATATTTGTAG
1 CAATGAATCCATATTTGTAG
689 CAATGAATCCATATTTGTAG
1 CAATGAATCCATATTTGTAG
709 CAATGAA
1 CAATGAA
716 ATAATATTGT
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 4 0.15
20 22 0.85
ACGTcount: A:0.39, C:0.15, G:0.13, T:0.33
Consensus pattern (20 bp):
CAATGAATCCATATTTGTAG
Left flanking sequence: Indices 170 -- 669
ATTTACTTGTTACTAATAAAGTCTAGCCACTGTTTTTCCTTAGATCCCTTATTTCACTCCGATAG
TATCATAGATCGGGATCGATGCAGAGGAAATGAATGCATTTCTACACTATAAATAAAATAAAGTA
AGTGGAATAGATAGAACATTGGATCATGCCACATCACTTATTCTATTCTACGGGATCTTACGGAG
CCTGTTCATGCATGACATGATTCGGGTATGATCATAGAAAAGATTCTCCTCAAGCGAACCTGCCT
ATCCTCTGCTACGCTACATAGGGGGACTTACGTGGTGGTTGGATGCGGAGACACATTTGGTTATG
AATTCCAACGTGGCGGATAAAATCATATATCTGCATGGCCCAATTAATAGTTCAAGTCACACACT
CCCATAATCCATCCTCTCTTCGAAAAATCCACTTCAACTATTCGTATCAATTAAGAAATACAATA
CTTCGGAGTTGAAGAGAAGTATCCAAATAACATGTCTTATTTTTT
Right flanking sequence: Indices 716 -- 1215
ATAATATTGTTCCTTCCCGATATGATATATGATCAATTACAAATATCTATGATCTGTCTTCTCTA
TAAAGGACCCGAAATACCTTGCTTACGTATCATTGGAAAGTGCATTAACATAAATACGGCAGTAA
GAAGAGGCAATACAAAAGTGTGTAAACTATAAAAACGAGTCAAAGTGGATTGGCCCACACTAGCA
CTTCCACGTAATAACTCTACCAAAGGCGATCCTATTACAGGAATAGCTTCAGGTACACCTGTCAC
GATTTTTACTGCCCAATAACCAATTTGGTCCCGAGGTAAGGAATAACCAGTTACACCAAAAGATG
CAGTCAATACACCTAAAACCACACCTGTAACCCAAGTTAATTCGCGGGGTTTTTTAAATCCACCT
GTGAGATATACACGAAATACGTGCAGGATCATCATTAGAACCATCATACTTGCTGACCATCGATG
AACTGATCGAATTAACCAACCAAAATTGGCCTCAGTCATTATGTA
Found at i:37710 original size:19 final size:19
Alignment explanation
Indices: 37686--37723 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
37676 ACTTATTTCC
37686 TCTCGACTATTCGACAATT
1 TCTCGACTATTCGACAATT
37705 TCTCGACTATTCGACAATT
1 TCTCGACTATTCGACAATT
37724 CTGTCCATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.26, C:0.26, G:0.11, T:0.37
Consensus pattern (19 bp):
TCTCGACTATTCGACAATT
Left flanking sequence: Indices 37186 -- 37685
ATTGCCGAACATTCCCTCAACTGTTTGAACGAGCTGCCCGCATGCAGAGGAGTATAAAAGACGGG
TCTATCACTTTCCTCAGGAACAGAAATAATGGGGGAGAAGACAAGCCGAAGAAGACCCTAAGGAC
CCAGCAGCCAACTCAAGAGGTTACCATCACTCCGGATCAAATTAATGCGGTTCAAGCACAGCAGA
ATGCACAGAGACAACAGAGCACCCGGAATCAGCAAGCCATCCAGGGGGCCGGGGCCGTCCCCCAA
CCCACTCAAAACCCTCTTACCCAATCGCAACCGCAAAACCCAGCGCAAGCTCCGCCCAGACCCGC
TTATAACAACGCTGCGCCTCCGGCCAATTATGATCCTCAGCAGCAACAAGGTGCTCCTGGGGACC
CAATAGAGCTCACTACCCGCCATTACCCCTACCCTATTTTCCATCCTTCTGGCCTGGAAAGCCAT
TTCTCTGCCCAGAGATAAACCACTCCCCTGGCCAGACTTATTTCC
Right flanking sequence: Indices 37724 -- 38223
CTGTCCATTTCACCGATACGCGGGCCATACCATCGAAGAGTGTCATACTTTGCGTGATGTCATCT
ATGACATGAATGATTAAAATCGTATCAATTGGAACGAAGTTAAGGCATACCTGAAAGCCGCCAAT
GTCACTGAAGCGTATAAAATGGGGATCTATACTAATCCAATGCCACAACATCAAGGGGGACAAGT
CACTACTCAGAGACTTACACCAGTACAAACTAATCCAGGACCTTCTGCCAGCGCTAACACCAGCC
GAGCTTGCACTGCCGCTCGAAGAGAGATGCCTGTGAGACCCCCTCGACGTTCTGTAATTCGAAGG
AGGTTCTGAGAATGAAAAACTCCGAAGTCACTTTCTTTGTCCCCAGGTAGCGCTTGCTTCCAAAA
GCAGACGAAATCACTATGGAACCGGACCTCCTCGCTGCCGCTCAATTCATTACTTTTAAGAGGCA
AATTCGCTTTTTTAGTAAGGGTGGGTGGAAAAGGTGAAGAAGGAA
Found at i:55721 original size:16 final size:16
Alignment explanation
Indices: 55702--55734 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
55692 GGCGAGAAGC
55702 ATATATATATAGAAAA
1 ATATATATATAGAAAA
*
55718 ATATATATATATAAAA
1 ATATATATATAGAAAA
55734 A
1 A
55735 AAATAATATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (16 bp):
ATATATATATAGAAAA
Left flanking sequence: Indices 55202 -- 55701
AAATCTATGCATACCCTGTTCCCTCCATTTCCCCCGCTAACCGGTACTACATTCGCCAACCAATC
CGGATAATGGATGGGGGTGATGAATTCCACTTCTATCAGTTTCTTCATCTCTTCCTGTCCCTAAC
GGTCCAGATATTTCATAACCTGTCCCTGCAGTGATATGGCAGGATGCATTTCTTGAAATTCCTGC
TTTACCGGTTTTGCCCCTCCCTCATGAGATAGCTGATCATCTTTTTGATATTCAAAAGGTACTCT
CATCCAGACAAAATGGAAGATCCTCCTTTCATTTCCATGTGGGGAGGAGGCAGCTGTGCTGGCTG
ATTGGTCCTCATGTCGATTGGAAGAATGTGCAGGACGGTCTGCTGAAATGTAGGGCTCGGGGGGG
ACATATACTGACTCGGCGATACGGGAAGTGATGGTGTTAGTGGGGGCTCCGGAGAACGGGGTGGA
GAGACCTTTTTAAGTATTGAAGAGTCGTCTTCGGGGGCGAGAAGC
Right flanking sequence: Indices 55735 -- 56234
AAATAATATATATATATAATAATATATTTTTTATATAAAATATTATTATATAATTTTATTATAAA
AGATGAACTCCAAATCGCTGATGAGCTACCCGATTCCCAACCAACATCTGCGTACGCGAAGAAGG
CTTATTGTTAGTCGCTTGAGAGCTGTCCATGCCAAGCGTATGATCGATCACACATCTGCTCTTCT
CATTCTCTTCTCTATGCTCCAAACACAAAAAATGAATATTCACTGGAAGGGGAAGCAGTACAGTA
CTAAATAGTATGGTTCAAACCAGATGGAAGGGCAAGCAAGCGGACGTAGCTCTCAAACTACTTCT
CTTTGCTCAGGACTCCCTTTGACTTTACTAATAAGGGGATCGAACTTTCAGAAGGGTAGGGTGGG
CCAGGCAGACATAGGAACTTCGTAAAGGCAGTCAAAAACAGAGGATAGAGAGCGCATGAGCTTTC
ATTCTGCTTCTGAAGCTTCAACTGTTCTAACAACACCTCGCACAT
Found at i:55725 original size:18 final size:18
Alignment explanation
Indices: 55702--55761 Score: 75
Period size: 18 Copynumber: 3.2 Consensus size: 18
55692 GGCGAGAAGC
*
55702 ATATATATATAGAAAAAT
1 ATATATATATAAAAAAAT
55720 ATATATATATAAAAAAAAT
1 ATATATATAT-AAAAAAAT
* *
55739 AATATATATATATAATAAT
1 -ATATATATATAAAAAAAT
55758 ATAT
1 ATAT
55762 TTTTTATATA
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
18 14 0.38
19 13 0.35
20 10 0.27
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.37
Consensus pattern (18 bp):
ATATATATATAAAAAAAT
Left flanking sequence: Indices 55202 -- 55701
AAATCTATGCATACCCTGTTCCCTCCATTTCCCCCGCTAACCGGTACTACATTCGCCAACCAATC
CGGATAATGGATGGGGGTGATGAATTCCACTTCTATCAGTTTCTTCATCTCTTCCTGTCCCTAAC
GGTCCAGATATTTCATAACCTGTCCCTGCAGTGATATGGCAGGATGCATTTCTTGAAATTCCTGC
TTTACCGGTTTTGCCCCTCCCTCATGAGATAGCTGATCATCTTTTTGATATTCAAAAGGTACTCT
CATCCAGACAAAATGGAAGATCCTCCTTTCATTTCCATGTGGGGAGGAGGCAGCTGTGCTGGCTG
ATTGGTCCTCATGTCGATTGGAAGAATGTGCAGGACGGTCTGCTGAAATGTAGGGCTCGGGGGGG
ACATATACTGACTCGGCGATACGGGAAGTGATGGTGTTAGTGGGGGCTCCGGAGAACGGGGTGGA
GAGACCTTTTTAAGTATTGAAGAGTCGTCTTCGGGGGCGAGAAGC
Right flanking sequence: Indices 55762 -- 56261
TTTTTATATAAAATATTATTATATAATTTTATTATAAAAGATGAACTCCAAATCGCTGATGAGCT
ACCCGATTCCCAACCAACATCTGCGTACGCGAAGAAGGCTTATTGTTAGTCGCTTGAGAGCTGTC
CATGCCAAGCGTATGATCGATCACACATCTGCTCTTCTCATTCTCTTCTCTATGCTCCAAACACA
AAAAATGAATATTCACTGGAAGGGGAAGCAGTACAGTACTAAATAGTATGGTTCAAACCAGATGG
AAGGGCAAGCAAGCGGACGTAGCTCTCAAACTACTTCTCTTTGCTCAGGACTCCCTTTGACTTTA
CTAATAAGGGGATCGAACTTTCAGAAGGGTAGGGTGGGCCAGGCAGACATAGGAACTTCGTAAAG
GCAGTCAAAAACAGAGGATAGAGAGCGCATGAGCTTTCATTCTGCTTCTGAAGCTTCAACTGTTC
TAACAACACCTCGCACATGGAGATGGGCACGTTCCACTCGAAAAT
Found at i:55743 original size:16 final size:16
Alignment explanation
Indices: 55706--55761 Score: 58
Period size: 16 Copynumber: 3.4 Consensus size: 16
55696 AGAAGCATAT
*
55706 ATATATAGAAAAATATA
1 ATATATA-AAAAAAATA
55723 TATATATAAAAAAAATA
1 -ATATATAAAAAAAATA
* * *
55740 ATATATATATATAATA
1 ATATATAAAAAAAATA
55756 ATATAT
1 ATATAT
55762 TTTTTATATA
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
16 19 0.56
17 8 0.24
18 7 0.21
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (16 bp):
ATATATAAAAAAAATA
Left flanking sequence: Indices 55206 -- 55705
CTATGCATACCCTGTTCCCTCCATTTCCCCCGCTAACCGGTACTACATTCGCCAACCAATCCGGA
TAATGGATGGGGGTGATGAATTCCACTTCTATCAGTTTCTTCATCTCTTCCTGTCCCTAACGGTC
CAGATATTTCATAACCTGTCCCTGCAGTGATATGGCAGGATGCATTTCTTGAAATTCCTGCTTTA
CCGGTTTTGCCCCTCCCTCATGAGATAGCTGATCATCTTTTTGATATTCAAAAGGTACTCTCATC
CAGACAAAATGGAAGATCCTCCTTTCATTTCCATGTGGGGAGGAGGCAGCTGTGCTGGCTGATTG
GTCCTCATGTCGATTGGAAGAATGTGCAGGACGGTCTGCTGAAATGTAGGGCTCGGGGGGGACAT
ATACTGACTCGGCGATACGGGAAGTGATGGTGTTAGTGGGGGCTCCGGAGAACGGGGTGGAGAGA
CCTTTTTAAGTATTGAAGAGTCGTCTTCGGGGGCGAGAAGCATAT
Right flanking sequence: Indices 55762 -- 56261
TTTTTATATAAAATATTATTATATAATTTTATTATAAAAGATGAACTCCAAATCGCTGATGAGCT
ACCCGATTCCCAACCAACATCTGCGTACGCGAAGAAGGCTTATTGTTAGTCGCTTGAGAGCTGTC
CATGCCAAGCGTATGATCGATCACACATCTGCTCTTCTCATTCTCTTCTCTATGCTCCAAACACA
AAAAATGAATATTCACTGGAAGGGGAAGCAGTACAGTACTAAATAGTATGGTTCAAACCAGATGG
AAGGGCAAGCAAGCGGACGTAGCTCTCAAACTACTTCTCTTTGCTCAGGACTCCCTTTGACTTTA
CTAATAAGGGGATCGAACTTTCAGAAGGGTAGGGTGGGCCAGGCAGACATAGGAACTTCGTAAAG
GCAGTCAAAAACAGAGGATAGAGAGCGCATGAGCTTTCATTCTGCTTCTGAAGCTTCAACTGTTC
TAACAACACCTCGCACATGGAGATGGGCACGTTCCACTCGAAAAT
Found at i:55772 original size:16 final size:15
Alignment explanation
Indices: 55737--55797 Score: 56
Period size: 16 Copynumber: 4.1 Consensus size: 15
55727 TATAAAAAAA
55737 ATAATATA-TATATAT
1 ATAATATATTAT-TAT
*
55752 AATAATATATTTTTTAT
1 -ATAATATA-TTATTAT
*
55769 ATAAAATATTATTAT
1 ATAATATATTATTAT
55784 ATAAT-T-TTATTAT
1 ATAATATATTATTAT
55797 A
1 A
55798 AAAGATGAAC
Statistics
Matches: 39, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
13 8 0.21
14 1 0.03
15 10 0.26
16 15 0.38
17 3 0.08
18 2 0.05
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
ATAATATATTATTAT
Left flanking sequence: Indices 55237 -- 55736
GCTAACCGGTACTACATTCGCCAACCAATCCGGATAATGGATGGGGGTGATGAATTCCACTTCTA
TCAGTTTCTTCATCTCTTCCTGTCCCTAACGGTCCAGATATTTCATAACCTGTCCCTGCAGTGAT
ATGGCAGGATGCATTTCTTGAAATTCCTGCTTTACCGGTTTTGCCCCTCCCTCATGAGATAGCTG
ATCATCTTTTTGATATTCAAAAGGTACTCTCATCCAGACAAAATGGAAGATCCTCCTTTCATTTC
CATGTGGGGAGGAGGCAGCTGTGCTGGCTGATTGGTCCTCATGTCGATTGGAAGAATGTGCAGGA
CGGTCTGCTGAAATGTAGGGCTCGGGGGGGACATATACTGACTCGGCGATACGGGAAGTGATGGT
GTTAGTGGGGGCTCCGGAGAACGGGGTGGAGAGACCTTTTTAAGTATTGAAGAGTCGTCTTCGGG
GGCGAGAAGCATATATATATAGAAAAATATATATATATAAAAAAA
Right flanking sequence: Indices 55798 -- 56297
AAAGATGAACTCCAAATCGCTGATGAGCTACCCGATTCCCAACCAACATCTGCGTACGCGAAGAA
GGCTTATTGTTAGTCGCTTGAGAGCTGTCCATGCCAAGCGTATGATCGATCACACATCTGCTCTT
CTCATTCTCTTCTCTATGCTCCAAACACAAAAAATGAATATTCACTGGAAGGGGAAGCAGTACAG
TACTAAATAGTATGGTTCAAACCAGATGGAAGGGCAAGCAAGCGGACGTAGCTCTCAAACTACTT
CTCTTTGCTCAGGACTCCCTTTGACTTTACTAATAAGGGGATCGAACTTTCAGAAGGGTAGGGTG
GGCCAGGCAGACATAGGAACTTCGTAAAGGCAGTCAAAAACAGAGGATAGAGAGCGCATGAGCTT
TCATTCTGCTTCTGAAGCTTCAACTGTTCTAACAACACCTCGCACATGGAGATGGGCACGTTCCA
CTCGAAAATATACTTCCACTATTGAGAGAATTGTGGTTGGTAAGA
Found at i:55793 original size:13 final size:13
Alignment explanation
Indices: 55763--55800 Score: 51
Period size: 13 Copynumber: 3.0 Consensus size: 13
55753 ATAATATATT
55763 TTTTA-TATAAAA
1 TTTTATTATAAAA
* *
55775 TATTATTATATAA
1 TTTTATTATAAAA
55788 TTTTATTATAAAA
1 TTTTATTATAAAA
55801 GATGAACTCC
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
12 4 0.19
13 17 0.81
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (13 bp):
TTTTATTATAAAA
Left flanking sequence: Indices 55263 -- 55762
AATCCGGATAATGGATGGGGGTGATGAATTCCACTTCTATCAGTTTCTTCATCTCTTCCTGTCCC
TAACGGTCCAGATATTTCATAACCTGTCCCTGCAGTGATATGGCAGGATGCATTTCTTGAAATTC
CTGCTTTACCGGTTTTGCCCCTCCCTCATGAGATAGCTGATCATCTTTTTGATATTCAAAAGGTA
CTCTCATCCAGACAAAATGGAAGATCCTCCTTTCATTTCCATGTGGGGAGGAGGCAGCTGTGCTG
GCTGATTGGTCCTCATGTCGATTGGAAGAATGTGCAGGACGGTCTGCTGAAATGTAGGGCTCGGG
GGGGACATATACTGACTCGGCGATACGGGAAGTGATGGTGTTAGTGGGGGCTCCGGAGAACGGGG
TGGAGAGACCTTTTTAAGTATTGAAGAGTCGTCTTCGGGGGCGAGAAGCATATATATATAGAAAA
ATATATATATATAAAAAAAATAATATATATATATAATAATATATT
Right flanking sequence: Indices 55801 -- 56300
GATGAACTCCAAATCGCTGATGAGCTACCCGATTCCCAACCAACATCTGCGTACGCGAAGAAGGC
TTATTGTTAGTCGCTTGAGAGCTGTCCATGCCAAGCGTATGATCGATCACACATCTGCTCTTCTC
ATTCTCTTCTCTATGCTCCAAACACAAAAAATGAATATTCACTGGAAGGGGAAGCAGTACAGTAC
TAAATAGTATGGTTCAAACCAGATGGAAGGGCAAGCAAGCGGACGTAGCTCTCAAACTACTTCTC
TTTGCTCAGGACTCCCTTTGACTTTACTAATAAGGGGATCGAACTTTCAGAAGGGTAGGGTGGGC
CAGGCAGACATAGGAACTTCGTAAAGGCAGTCAAAAACAGAGGATAGAGAGCGCATGAGCTTTCA
TTCTGCTTCTGAAGCTTCAACTGTTCTAACAACACCTCGCACATGGAGATGGGCACGTTCCACTC
GAAAATATACTTCCACTATTGAGAGAATTGTGGTTGGTAAGAAGA
Found at i:109470 original size:12 final size:12
Alignment explanation
Indices: 109453--109477 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
109443 CAGAGTCATG
109453 CAGTCCCATTTT
1 CAGTCCCATTTT
109465 CAGTCCCATTTT
1 CAGTCCCATTTT
109477 C
1 C
109478 TGGCTGCAAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.36, G:0.08, T:0.40
Consensus pattern (12 bp):
CAGTCCCATTTT
Left flanking sequence: Indices 108953 -- 109452
TGAAGCCTGCCATGGAAGGGAAAAAGCTCCCGCGGAGTCCAAATATTGGAAAGCTTTTTAGAATT
TAGAGCATAAAGGCAGTGATGACGAATGGAAGCACTTGTGCCACAAGCAATTGAAGAGAAGTCCA
CCTTCAGGTGCAGAGGGACCTGGATAAACGTTAACTGGGGAGGCCTCTTCCTTACACTCCGAATC
AGCTGGTCCAACGCTTAGATCTTGTAAAGTTATTTCATGCAGTTCCTTCTTTGCCCCTCGGTTCA
CCTTTGTTGCTAGAGATAGCCGGTTGGCAAAGCCAACAGGGATAGGATGCCGCGACAAAAAATCC
AGTTGGAGTCTATCGGAGAGCAACTACAAAGCAAATGGGGCTGATTAGAGAAGGCACTTTTTATC
CTTCACCACTGGTACACTTCTTTTTTCTTGGTTAGCGCTCATGTTTTCCTTGCGCGCTCCTGTGT
TCAGTGCCCCCCTTCTTCTCGCAGAAATTGGATATCAGAGTCATG
Right flanking sequence: Indices 109478 -- 109977
TGGCTGCAAGGCCCGGCCCGAGTAGTCAATGGTTGCTACCGCTCACTGCGCTTCTCTGTACCATT
TATAGTCAAAATAGATGCTGGGCATATCTACTGACCCGACGAAGCTGACGTAATTCTATCCATCC
ATAGCTGTCTGTACCACTACCTCTATCCAGCAGATCCAGCGCCAACCGATCTATATCTAGCTTTG
GCCGGCCGGGCCAACCCACCTATACAGAGCTGACGCCATGCCCACCTAACCACGAAAGCATCCAA
TATTTCAAGAGCTGTATGCCAGGCCGCAGATCCAACACTCCGCCTGGAGGGCAACCACCAAAGCA
CCTTCCTACAGTACACCTTCATCTGGGACACGCACCTGCATTCAGCCCTTCCATCGATGTGAGCG
CGTCACCAGATAGTCGAGTTGAACCGCTTACAGCGCCTTCATCCCCTTCGGTCGATCAACCCTAT
AAGACGAAAGCAGCTAAGAGGTATAATCCCCTCACCTGCTGATGC
Found at i:119592 original size:30 final size:30
Alignment explanation
Indices: 119556--119629 Score: 139
Period size: 30 Copynumber: 2.5 Consensus size: 30
119546 CTAGTTCCGT
119556 TCCTTATAGTCGAGTGGCTTCCATCTCCTC
1 TCCTTATAGTCGAGTGGCTTCCATCTCCTC
119586 TCCTTATAGTCGAGTGGCTTCCATCTCCTC
1 TCCTTATAGTCGAGTGGCTTCCATCTCCTC
*
119616 TCCTTTTAGTCGAG
1 TCCTTATAGTCGAG
119630 ATCTTTTAGA
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
30 43 1.00
ACGTcount: A:0.14, C:0.31, G:0.18, T:0.38
Consensus pattern (30 bp):
TCCTTATAGTCGAGTGGCTTCCATCTCCTC
Left flanking sequence: Indices 119056 -- 119555
TGTCTTTATCCCAGGTGCTCAAGCCATTTTCTTCAATCTGCACTGAGCGAGTCAAGATAAGCGTC
ATGATCTGCAAGAGCTGAGGTGTTCCGAAGTTTGCTTAGTGCCGATAAGGAACGAACGAAGCCAC
TTCGCAAGCAGCAAAAAGCTCTCATTTAAGAAATTGGAAGCAGGAATGAAGAAGGGGGCACAGTC
AGACTTTCGTCTCAGACTGCCTTAGACAATGAAACTGTTCAGATATCCTCGCATATTCAGAATCT
TGCCCCTCAGCTCGCTACTAAAAGGGGGCATCATCTCCAAAGGATCTCGCTTTTCCAAAGCAGCT
CGCAATACTCACCGATAGCGCCTCTATTAACCATTAACCGTTACCACTCGCAAAGTCGGGAGGAA
GGCCCGCCCCTCAAAGTCGCTTCAAGCCGTACTGAATCTATAGTTGATAATCAGTCTGTCTTGTT
CAAGAAAGAGTTTCGAGGCCTACGATACACTGAATCTAGTTCCGT
Right flanking sequence: Indices 119630 -- 120129
ATCTTTTAGAACCTTCACCTTTGAGTCGAGTTGCTTCCTTCGCTCATTCACCTTACTGGGTGGGG
TCTCTTTCACATCCTTTGTTTAGTTATCTACTTCACTTTCGATAACCTCGGCAAAAAAGCTTAAT
TCTCTCTTCATTCAGATAGATCCTCTGCTTGCGTAGTCTTCTCTATCCTTATTCCCTGTGACGGT
TGACCGACCCGCGTAAGGTGCCGGTCCCTGCCTTAAGCTTTTCAGCCTAAATCTCTTTCTTATTG
AATGTATATCTATCTCCCTATTCGTATGGTCAAGTCCCGTAAAGTTCGTTCCGCTTGCTCCTGGC
TGGTGCGCTCTACGGCTAACTTTCTATCTTGACTGCATCCAAAAAGAATGGGTTTATGCAATTTC
AGACTAAGGATGTGGAACAGAGCCAGCCGCCTACCTACTTCTGAAAGTTATTTCCTCTTTCTTTC
CCCGCAGCTATTCGTTACGTTTTGTTTTCAATTCAATTGAGCGTC
Found at i:120764 original size:16 final size:16
Alignment explanation
Indices: 120743--120775 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
120733 GATGGGCTGC
120743 TCCAAGGGAAATCGAA
1 TCCAAGGGAAATCGAA
120759 TCCAAGGGAAATCGAA
1 TCCAAGGGAAATCGAA
120775 T
1 T
120776 GTTTGTGCCT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.42, C:0.18, G:0.24, T:0.15
Consensus pattern (16 bp):
TCCAAGGGAAATCGAA
Left flanking sequence: Indices 120243 -- 120742
AGCCGCTAAACCGAGTCAATTCAAGAGAAGCTAAAGCGTGGGTGACGGAACGGAATTCACTTTCT
TTCGCCCAGTTGCAAGCTACTCAACCTATGGAATAACCTATCTTGCAGATCCTGTTACGTCGAGT
CTCTCTCTCTATTGCATATCCTTCGGCTAAATAAGCTCTTTTATGCACCTCCAGTTAGTCAAGTA
GCTCTCTTTCAGATCCTGACGGAACTAGATGAGACTAAGCAAGCACGGTGGACTTCTCTTCTTTT
CTTTGCCGAGTTCGACAAGGTGATCGAATACAAGCCAGGACAAGAAAGTAGCCGACCCACTCTAC
TAAGTAGGAAGGCTGAGCTTGCTGCCATCAAGATGGAGGAGGTAGCTTACGGTGAGTCAACTCAT
TTGCACCATCCCTGACCGCATTAGGTATAAGGTTTGTCAAAATATCTCTTTATTTGCCAACAAGA
GCTTAATGATAGCTACTAAGGATCAATAAGGCTTGGATGGGCTGC
Right flanking sequence: Indices 120776 -- 121275
GTTTGTGCCTAAGTGGTACCTTCTTCGTAAGGATGTGACAGAGAAGCAAAAGGAGGATTGCTAGA
GCCGCAGCTACCTGTGAAAGACCGTGGGCAAGCATATATCAATGGACTGAATCTCAGCTCTGCCC
AAGGTGGGTTTTGCACTTGGTCATGGTGATATGCTTGATAAAGGTTTGTTTCGTCGATAGCATTT
TCTGATTTGGGATGCGTAGTAGCTGTTGTCACAGTAGGGGTCCTAAGGCGGGAATTGTCCTAAAG
TAGCCATAGCGTTGATTGCTCTCCTTGTTCTATTGTATGGGCGAATTATCTTAATGAAAGCCTTC
TTTTTGGCTCTCGTGTGAGGGTTGTCATAACTTGTGTCTATCTGCTGTTAAATTACTTTATAGAG
TCCTAAGGGTAGTATCAAAGATAAGGGATTCAAGCCGTATTTGTTTTGATTAGCTGTCCCAGGGA
AAGGAGTAAGTATTGGCTGTTGGCATGTCCGAGCTAAGATTGGTT
Found at i:123514 original size:15 final size:15
Alignment explanation
Indices: 123494--123536 Score: 86
Period size: 15 Copynumber: 2.9 Consensus size: 15
123484 AGGCACCAAG
123494 GCTTCTTACCCTTCT
1 GCTTCTTACCCTTCT
123509 GCTTCTTACCCTTCT
1 GCTTCTTACCCTTCT
123524 GCTTCTTACCCTT
1 GCTTCTTACCCTT
123537 GGTAGTGTGC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 28 1.00
ACGTcount: A:0.07, C:0.40, G:0.07, T:0.47
Consensus pattern (15 bp):
GCTTCTTACCCTTCT
Left flanking sequence: Indices 122994 -- 123493
TCAGCTTCCATTGAGCGTTGAGAGAGAAATCGAGATGTGAGAAAAAGAATAGCTTTTCTTCAGCT
CTTCACTAGCCATTGCCAATCCTGTTCTCGATGGGAAAGCTTTACCTTAAGTGGAGTGGCCAGGC
TCTGATCTGATTCCTCTTCGCGACTCTGAACGAATGCTGTCGGCATTCAATCATACATATACGAA
GTGTGCCGCGAGTCACCTTAGAGAAAGAGAAAGGAACTTATAATGATTGCTAGCAGATGTTATGA
AAGAAGGGATAGAAGGAGAAGAGACTGGGGAATGCTTTTTCACTATACGAGAATTCCTCTGATTC
CTCCATTCCAACCAGGTTTTCAGGAATAAGCACTGCAAGAATGGCGATACCCCCTGCAGTTACCT
CTAAAAGGAATGATCTCGGGCATCAATCTAAAGAGAGTTTGGTAGCTTTCCGGGAAATTGCCTTA
TCTTATTAAAGGAAAAGGAAGAACTCGCTTTCGCTAGGCACCAAG
Right flanking sequence: Indices 123537 -- 124036
GGTAGTGTGCTTGTACAGAGTAGTTTGTTTCACCTCTAATACCGTTTTGGAATCAGTAAGAGTTC
GCATCACTGTTTCCTCAGGAAGCAACGCAGTAGACAGCGATTTCATCTCATGACGCAGTTTAGCA
ATTTCTGACTCCATACTAGCAATACGCTGAGCATATTCTTTCTCTTTCTTTTCAAAGATCTCTTT
AATGAAAGCATTTTCCTCCTTCAGAATCTTCAATTCCAATTTTAGAATAGAGCTTTCTTGACCAC
CGAAGTCTATTACATCCTTAGGTTGTGTGTCTACCCAAACATTGTTATCATCATACACAGGGTCC
CTTTTTGTATCCGCTTGGATTCCAAGGCTTACTTGGAAAGACTTTTTGGCTATGTTTAGGGTATG
CCAATCAATTCTGAAGTTACCTTTTTCAAAGAGCTGATTCGGTCACAGGATTCTCTAACAGGATT
CGTTCAAACAGAAAGAGAACTGCTCCTGCTTCTTATAAAAGAGAA
Found at i:197527 original size:10 final size:10
Alignment explanation
Indices: 197516--197579 Score: 101
Period size: 10 Copynumber: 6.3 Consensus size: 10
197506 TATAATATAT
* *
197516 ATATAATAAT
1 ATATTATAAG
197526 ATATTTATAAG
1 ATA-TTATAAG
197537 ATATTATAAG
1 ATATTATAAG
197547 ATATTATAAG
1 ATATTATAAG
197557 ATATTATAAG
1 ATATTATAAG
197567 ATATTATAAG
1 ATATTATAAG
197577 ATA
1 ATA
197580 GTTAGTTAAA
Statistics
Matches: 51, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
10 43 0.84
11 8 0.16
ACGTcount: A:0.52, C:0.00, G:0.08, T:0.41
Consensus pattern (10 bp):
ATATTATAAG
Left flanking sequence: Indices 197016 -- 197515
GATTACTGGCCGATGTTCCGGTATGGCGGGTGTAGAAGTATACCATTATAGGGAGCTCCGTCCAT
ACCAATGGTGGAGTGAAAAGCTGTCGTGATTCATCTCCACCTGCCAACCATGGGAACTTACTTAT
GAATCTAACTCTTTTGAATAAACCGTCGGCTCATGGAGCTACAGGGAATGATACTGACAGAGAAG
GGTAAACTCCTGCCATAGTTATTATGTCCCCAAACTCGACAGTTTTTTGATCATCCCCCCTAGCT
CACATGGAGTATGTTACGCCTTCCAATGGATAAACGTTAGTACCCGTGGATAGAGATGTTTTCCC
AATGATTGATAGATATACCGGGGAGATAGTTTGGCAAGCAAGATCTTCTACTGGAAATGAAGCTG
TCTTCTACGGGAGAAACTTCGTCGGATAGGCCGGAGTGAGGGAGCCCAGTAATATATATAATAAA
AAAGTATTATATATATTATAAGATATATATTACTTTATAATATAT
Right flanking sequence: Indices 197580 -- 198079
GTTAGTTAAAGATAAAGATTACTTATTACAAAATTTTTAGTCCCTTCGTTCCCGTCTGAGAGACT
GACATCAGACTTGTAGTCATTCCGGGAACCTACAAGACCTTGTCGAAGTAGAAAGATTGTTCCCT
CTCTGAACATGAATGGCGCTCTATCTATTCCTTCAACCCTATGTTGACTGCTGTCAAGATTGATG
CAGGAATGAAATTAAGAAAAGACCTTTCTCCCGTGTGCCATGTGCCTTGAAGCTCCAGAGTCTAT
GATCCAGTCCATGCTATTTGCGTGATGGAAAATAGTAGGAACTGGACGTCGGAAGAATCCGCAAA
TGAATATTCTTTATTTCCTCTCGGACAGGCCCTCTTTTCTCATTCGAATGGACATCTCTTTCGGT
AATGATCATCTACAACTGAAAGACTGACGTCTTCCTCTACTCGATCCTTAGTTAGACTATCTCCC
TCCACCTCGATTCTTCTGATCCTCATAGCCGAACTCCTTTTTTAT
Found at i:197528 original size:19 final size:19
Alignment explanation
Indices: 197457--197528 Score: 53
Period size: 19 Copynumber: 3.9 Consensus size: 19
197447 GAGCCCAGTA
*
197457 ATATATATAATAA-AAAAGT
1 ATATATATAATAATATAA-T
* *
197476 AT-TATAT-ATATTATAAG
1 ATATATATAATAATATAAT
* *
197493 ATATATATTACT-TTATAAT
1 ATATATA-TAATAATATAAT
197512 ATATATATAATAATATA
1 ATATATATAATAATATA
197529 TTTATAAGAT
Statistics
Matches: 41, Mismatches: 7, Indels: 10
0.71 0.12 0.17
Matches are distributed among these distances:
17 5 0.12
18 15 0.37
19 20 0.49
20 1 0.02
ACGTcount: A:0.53, C:0.01, G:0.03, T:0.43
Consensus pattern (19 bp):
ATATATATAATAATATAAT
Left flanking sequence: Indices 196957 -- 197456
CGCTATCGATTGGTATAGCTCAGAATGGTTCTGGATCGATTCCACCGGAACTTCAAAACGATTAC
TGGCCGATGTTCCGGTATGGCGGGTGTAGAAGTATACCATTATAGGGAGCTCCGTCCATACCAAT
GGTGGAGTGAAAAGCTGTCGTGATTCATCTCCACCTGCCAACCATGGGAACTTACTTATGAATCT
AACTCTTTTGAATAAACCGTCGGCTCATGGAGCTACAGGGAATGATACTGACAGAGAAGGGTAAA
CTCCTGCCATAGTTATTATGTCCCCAAACTCGACAGTTTTTTGATCATCCCCCCTAGCTCACATG
GAGTATGTTACGCCTTCCAATGGATAAACGTTAGTACCCGTGGATAGAGATGTTTTCCCAATGAT
TGATAGATATACCGGGGAGATAGTTTGGCAAGCAAGATCTTCTACTGGAAATGAAGCTGTCTTCT
ACGGGAGAAACTTCGTCGGATAGGCCGGAGTGAGGGAGCCCAGTA
Right flanking sequence: Indices 197529 -- 198028
TTTATAAGATATTATAAGATATTATAAGATATTATAAGATATTATAAGATAGTTAGTTAAAGATA
AAGATTACTTATTACAAAATTTTTAGTCCCTTCGTTCCCGTCTGAGAGACTGACATCAGACTTGT
AGTCATTCCGGGAACCTACAAGACCTTGTCGAAGTAGAAAGATTGTTCCCTCTCTGAACATGAAT
GGCGCTCTATCTATTCCTTCAACCCTATGTTGACTGCTGTCAAGATTGATGCAGGAATGAAATTA
AGAAAAGACCTTTCTCCCGTGTGCCATGTGCCTTGAAGCTCCAGAGTCTATGATCCAGTCCATGC
TATTTGCGTGATGGAAAATAGTAGGAACTGGACGTCGGAAGAATCCGCAAATGAATATTCTTTAT
TTCCTCTCGGACAGGCCCTCTTTTCTCATTCGAATGGACATCTCTTTCGGTAATGATCATCTACA
ACTGAAAGACTGACGTCTTCCTCTACTCGATCCTTAGTTAGACTA
Found at i:229886 original size:29 final size:26
Alignment explanation
Indices: 229827--229901 Score: 105
Period size: 26 Copynumber: 2.8 Consensus size: 26
229817 TACAGGGATG
*
229827 CTACTACTAACTACTGACTAAAGAGA
1 CTACTACTAGCTACTGACTAAAGAGA
*
229853 GTACTACTAGCTACTGACTAAAGAGACTA
1 CTACTACTAGCTACTGACTAAAGAG---A
229882 CTACTACTAGCTACTGACTA
1 CTACTACTAGCTACTGACTA
229902 TGTAGCTGGG
Statistics
Matches: 43, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
26 23 0.53
29 20 0.47
ACGTcount: A:0.37, C:0.24, G:0.13, T:0.25
Consensus pattern (26 bp):
CTACTACTAGCTACTGACTAAAGAGA
Left flanking sequence: Indices 229327 -- 229826
ATCCCTTAGCGTTGATCCACCAGCGGCTTCACTCTGAAGCAAAGGCAGGGGCACTACCAGAAGCA
TACCTTCCATATCGAGATCGTGATCCAGATCCGTATACGAGGCTATAAGCACCAGAGCAAGCACC
AATAGCAGTTGATCGGGAAGTATATCCAAAAGTAGATCAGGATGGATCTTCTCTCTTTCTTCTTT
TACTTAACTCCGAAATCTTTTCTTTCGATCCAGCAGTGGAGATAGAGACAGAGGCAGATGCATTT
GACCGAGTGGAGACAGCTGTGGAAGCTGCAATCCTGGAGGAGAGAATGAAGTAGGTAGGGCCCGC
GGGACTAGAAAACTCGTTTCCCTATCTATCTCTCTCATTTCTTCTGGTCGACGGCCTTCCTCTAC
TCTTGCTACCAGGCCCGGTAGTGACAGGGATGCTACTGCATGTGCTACTACTACTACCTACTGAC
TAAGGAACTTCAGGGATGCTACTGCTACTACTACCTACAGGGATG
Right flanking sequence: Indices 229902 -- 230401
TGTAGCTGGGACAGTGAAGATCAAAGATTAGGTATCCTATCCTGTGCAATCTAGATAAATGATTG
GTGTAGGAACCATTCTACTCTCAAAGAAGAAGATAAAATGCCTATCCCACCCACAAGACTCCGAC
GACTCGGCCTTCGCCCTCGAACAAGTCTTTCTCACTTTCGTCAAATTCTTGCTCTTGCTCTGCCC
TTGTTTTTTCAGAACAAAAAAAAGAAAGACATTAAGAAATGGAAGAAGAACCTTCGAAAAGGAGT
GTCTTCCTTCGAAGCGAAGCTTGACCATCCACTGACTATTGATGAAGTGATGAAATGTGGAAATT
TGATGAATAGCTCAGTAAGGTGACGTCGCTTCGCTTTTTTTTATATAAAGTAGTAAGCTGATCTC
CGGCTGATCCTACCGCAGCCGTCACGCCCCCGTTTTAGCATTTTTTGGGGGGAGTAGGGTAGCTC
CTGTTCCAATGGAGGGACGTGTCTGGTCAACCGTTCGTTGAAATG
Found at i:268560 original size:16 final size:16
Alignment explanation
Indices: 268539--268569 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
268529 TATTAAATTT
268539 ATTATTATATTTATTC
1 ATTATTATATTTATTC
268555 ATTATTATATTTATT
1 ATTATTATATTTATT
268570 TATAATATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.65
Consensus pattern (16 bp):
ATTATTATATTTATTC
Left flanking sequence: Indices 268039 -- 268538
CGAGCAGCCAGCTAAAAGAGAGAAACGTGATGACTCGATGTCCCTGGCGAAAATAGTGGCTACTA
CTTTTTTGCTTTTTCAAAAAAAAAGGGTTGGGCTAGACCAAATGACTCGGCCAACAAGAGCTGTT
GAAGACTTTTGCTTATCAAAATTTGAGAAAAAAATGAGCAGTAGATGACTTTCAAAGAGAACAAA
GAAGCCATATCATCGAATCTCACCGCCAAGAGAGGAAGAAAGAAGAGGTGCTTTCAAGCCAGGGC
GCGGAGCCCGCTACGCTCAGTCAAGTAACGAAGAAAAGAAAAATGGAATTTTTGTCAGAAGCGAC
TGATGAGTGAGAGCGCTACGAAGAGCAAAGCCCCGTAGCCTATCCGTGGTCAGGAAGGCAGGCGA
ACAGCGCACACTTAAAAAATTGATGAAATACCCAAGAATGACTAGAATGATCAATTTTTTTCTAT
TTCTTCTTTTGAAACCTATTATCAGGCTTTTGGTATATTAAATTT
Right flanking sequence: Indices 268570 -- 269069
TATAATATAATGAATTATAATAATAAATCATTATATTTAGGGGAACTCAAATCCTTGCACCCGGG
CTTATAGGTCCTATTCTTGTGAACCCTACGGCTTATATATCCGTCGGATCGGTTCGTATATACAG
TTAGCTAAGGCTCACGGCCACTTTCATCTGTAAGGAAGACAAGACACTTTTATACCTCGACGCGC
CGCAGCCACTATTTTGACTACTTTTACGCAATTATGAACGGAACGGAACTTTCTCGATTCCAATG
CAACTTATCCTTTTGGAGCTGACGTAACAAACTACGCGAGCCTCCCGATGAAGCCAACAGAAATC
CTATCCGAATACTAAAAATAAAAGGCAATTTCATTATGGTGGTATACCAGCCGCCAGTTCTGGAA
CTTCCAGTTCCAATCGGAGCATATAGATCCGTAAATGGATTTGTATGTATAGCCACTTCAGTCGT
GCTTGTCCTTTCTCGAATGGAAAAAAAGTATCTTTTTTCTGGGAA
Found at i:281258 original size:19 final size:20
Alignment explanation
Indices: 281234--281272 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
281224 AGAGAGAACT
281234 AAGGAATGCC-ATAAG-GAGA
1 AAGGAAT-CCGATAAGAGAGA
281253 AAGGAATCCGATAAGAGAGA
1 AAGGAATCCGATAAGAGAGA
281273 GAAATCACAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 2 0.11
19 12 0.67
20 4 0.22
ACGTcount: A:0.49, C:0.10, G:0.31, T:0.10
Consensus pattern (20 bp):
AAGGAATCCGATAAGAGAGA
Left flanking sequence: Indices 280734 -- 281233
GACAGATTTTAGTCAACCACAGAGCTAACCGCTGCCCTAAGAAAGCTAGAGCGAATAGGCGCTTG
TGCGCTTGCAGAGTGAGGGTCGGGCTGATCCAAGAGTTCTGGTTCCGGTTCGAGAACCACTTCTT
CCTCTGCAAACAAAAAATGGGGCACACCAGCCCTGTCAGTGGAGTTGCACTCGTTGTTCCATCTT
CTTAATCAAAGCAAAGTCAGATTCCAACCTCGGACACATCCTCTTCTCATTGATCTGTGGAATCG
GCCCGCTGTGAGCCAACATTGGAACCAGGTCTTTTGAGTCTCCTACTCCTCTTGCTCTTAGCCCA
GTACTGGAGGTCGAGTGGAACTGGTTTTCCGGAAGCAAGAAAGACTCCTTTTGTTTAGTGCTCAA
AGGCAAGTCAATAAATCGATAGAAACTAAATAAAGGAAGAACAATCATTCATTGATGTAGTCGAT
CAAGCAGAACAGAATCTATCTCATTGAATAGGGAAAGAGAGAACT
Right flanking sequence: Indices 281273 -- 281772
GAAATCACAAAAGGAAGTGGACTCCAAGAATCCGAGAGTCTCAGTTTAGTTTCTATCGAGTGTAA
GTCATTCAGTCCCGACAGCCTCCCACCCTAGACCTATAGTTTCACGTGGGAACTAGGACCACTTT
CTAGTTGGTACTACAACGCACAAGCGGTAAGAGCAAACTGTCTTATTGGTTTCCTTTATTGCGAC
GTACTCTATGGGCTTATCGTCCCCCTCCCTACACGTCGACCTTTTCCTTGCTCTGGCACTGATTG
ACCAGCTTCATCGTCAACATTCTCATTCCCATAGCTTCTCGGATGACGACTGCTGACTTTGTCTT
CATTTCATTCTTTGACTGCTATGAGCTTGAGGCAGAGTCGGCTGAAGGTAGAAGGAGAAGAAGAG
ATTTTACTATGCCCTTCCGATCGAAAAAAAGAAGATAATTGCTCTGGAAAACTTGTGAAATTCAT
CTGATGGGCTTTTCTTTCCATTGAATAGGAATCGCCCGGTCAACG
Found at i:327586 original size:21 final size:21
Alignment explanation
Indices: 327562--327603 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
327552 CCACTACTGT
*
327562 ACGAATAGCATTTCCTTCTAC
1 ACGAATAGCATTTCCTGCTAC
327583 ACGAATAGCATTTCCTGCTAC
1 ACGAATAGCATTTCCTGCTAC
327604 GGTTTGAGCA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.29, C:0.29, G:0.12, T:0.31
Consensus pattern (21 bp):
ACGAATAGCATTTCCTGCTAC
Left flanking sequence: Indices 327062 -- 327561
GAGTTTCCAAGGCTCTTTCCCATCGAAGTCCTTGTTGGGCAGGTGCTATTCGGGCAGATTCAACT
TCGAGCTAGGCTTTGCTGACTTGAAAGTCCAGGTGGAAGTAGTCAGAATTGCTGACAAGCGGAGC
TCTACTGAACCTACTTTATAAATGCAATCGCCGGATGATTTCCCATCTCCTGAAAAATATCCTAA
GTGAGGTGGACTTTATCCATACCGTACTGGCAGGTACGATGAGGTTTCTTAAGAATACCAATTCT
TTCGGACCGAAGCGCGCTCAATGGCTTTTTGGGGCTTTTCGCGATGCCGAGATAACTAACTACCC
CTCCTCCCAATGGGAATAGGGGTTACGTCATGTACGAAACTTTCTTTATAGTATACCACTTCTAA
CTTGACTACTTAATAGTATACCACTTCTGGCTCGTCATGCTGCATCTCTTCCGAGACCAGGACCT
TTTATCACGACTTTCGCCTCTTTCGTACCCTGCTTCCACTACTGT
Right flanking sequence: Indices 327604 -- 328103
GGTTTGAGCAGCAAACGGGGTGTCCCAAATCTCTTTTTCTCTTTTGCCTTTGAATTCAAAAGTAC
CTGCGTAGGACCAAGAAACCCCCGGCAAGAGTAGGCCAAAGAAGCAAAGGAATGAGCGCCTCGCC
TTTACTCTAATAAGGGCGTTAGCGCATCCGTTTTCTTTCGTATCGCTAGGCGCTCACGTTTTTTG
TCTGGGTGAGGATTGTTTTTTTGGCTTGCAACTTGATTAGAGAAGGGCCGATTTGACTGAAGCTT
TCGAGAGCCTCCCTACAGATCTTTTGCATGCAACTTTCCTTCCTCCAGCAGTTCCTTATGATTCG
GACAGCAGTTCCTTATGATTCGGAATAGAGACTCCTTCATCCCATACCCCTATAATAATGGTAGA
GTAAGGGCTCAGGGTACCTTCCATGAATGGGACGGAGAAATCGATCGATACCGCCTTACCTGATA
GGGGGAAAAGCGCCGGCCGAGCGGCGCAACGATCAGTGTCAATCA
Found at i:327937 original size:22 final size:22
Alignment explanation
Indices: 327909--327952 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
327899 TTCCTTCCTC
327909 CAGCAGTTCCTTATGATTCGGA
1 CAGCAGTTCCTTATGATTCGGA
327931 CAGCAGTTCCTTATGATTCGGA
1 CAGCAGTTCCTTATGATTCGGA
327953 ATAGAGACTC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.23, C:0.23, G:0.23, T:0.32
Consensus pattern (22 bp):
CAGCAGTTCCTTATGATTCGGA
Left flanking sequence: Indices 327409 -- 327908
TTACGTCATGTACGAAACTTTCTTTATAGTATACCACTTCTAACTTGACTACTTAATAGTATACC
ACTTCTGGCTCGTCATGCTGCATCTCTTCCGAGACCAGGACCTTTTATCACGACTTTCGCCTCTT
TCGTACCCTGCTTCCACTACTGTACGAATAGCATTTCCTTCTACACGAATAGCATTTCCTGCTAC
GGTTTGAGCAGCAAACGGGGTGTCCCAAATCTCTTTTTCTCTTTTGCCTTTGAATTCAAAAGTAC
CTGCGTAGGACCAAGAAACCCCCGGCAAGAGTAGGCCAAAGAAGCAAAGGAATGAGCGCCTCGCC
TTTACTCTAATAAGGGCGTTAGCGCATCCGTTTTCTTTCGTATCGCTAGGCGCTCACGTTTTTTG
TCTGGGTGAGGATTGTTTTTTTGGCTTGCAACTTGATTAGAGAAGGGCCGATTTGACTGAAGCTT
TCGAGAGCCTCCCTACAGATCTTTTGCATGCAACTTTCCTTCCTC
Right flanking sequence: Indices 327953 -- 328452
ATAGAGACTCCTTCATCCCATACCCCTATAATAATGGTAGAGTAAGGGCTCAGGGTACCTTCCAT
GAATGGGACGGAGAAATCGATCGATACCGCCTTACCTGATAGGGGGAAAAGCGCCGGCCGAGCGG
CGCAACGATCAGTGTCAATCAGCGGAAAAGGACCCTAATCGATTCGGGGTCGGTTGCTGTTGCCA
ATAAGAGAGATCCGTCGTTGCTGCCGGTCTTTCCACCAATGAGCACTTGCTTGAGACCCCTTCAC
GCTGCAACCAAAGACCGCGCTTCGCTTGGTAAGAACCGAGACCCTTCGGCAGTCAACCTATGGTT
ACCTTACGATAGCTCAGGTTGGTTAGTCAAGTAAATGGCGGCTACAGGAAGACATACTTAATGAA
GCGGTGAAGCGGTCCAGCACTAACTAAAGGATAGCCATGGCCGGCTAGCGAGCCACTAAGAGATT
GGTTCTGCTTGGGAAGGGTCTACCCCAAAAAGAGTGTGTTTCTTC
Found at i:339065 original size:16 final size:18
Alignment explanation
Indices: 339044--339076 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
339034 GTAGGTTAGA
339044 TCATAAG-GAG-AAGAAC
1 TCATAAGAGAGTAAGAAC
339060 TCATAAGAGAGTAAGAA
1 TCATAAGAGAGTAAGAA
339077 GAAACAGATA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 3 0.20
18 5 0.33
ACGTcount: A:0.52, C:0.09, G:0.24, T:0.15
Consensus pattern (18 bp):
TCATAAGAGAGTAAGAAC
Left flanking sequence: Indices 338544 -- 339043
AGTCTTCCGCAAGCAAAAGAGGATTTCCTAAAAGAAAAGAAATCGTGTGCGCGCGAGGGCATATC
ACGAAATAAGTGAAAAAGTGAGTATCCACGGGTACTACAGCTCGACACGAAAGCCCTACGCTTTG
TCCTCCCGGCAAAAGGCACGAAAGATCAGTCTTAGGCGCCCAACTGCTCTCTTCGTTATAGGAAA
TATGATAAAGGAGAGCCGGTAGAACTCGGAAATACTGAAAGGCGAAGGGGGAAAGCGGAGAAGGA
GAAGACGGGAGTATCGACATAAGGAGCAGGCGGAGAGGCGTCAACCTTAACAACCATCACCAACG
GAAGCCAGTATATCTGTTTGCGGGCTAAGCCTATTAAGACAGCCCGATGAGCTAAGAAGTCAAGA
ACGTTGTTTATTATCCCCTTTCCTTATATCTTCTTTCTACCAAGCGAGATTGAGAGATGAAGCGG
GCAAGCAACATCGTGTATTTAAATAAGGAGTGCGAGTAGGTTAGA
Right flanking sequence: Indices 339077 -- 339576
GAAACAGATAGAGCAAAGGAAGGCCTAGCTTAGCAGGTCAGGTCTTGGCTCAGCAGACTCAACAG
ATCATAGCTCGGAAACAAGACTTGGAAAAGGCACTGAGCAAACACCGGTATCTGCCTTAGATGGC
TTTGATTGATTTCCACCCTTGAATCTTAGATTAAATGACTTTCCCCCCTTGATTGAGTTCTTCCG
ACTTCCTTGTTGAACTTGAAGACTGCTCAACTCCTAGCTTAACCCAGAACAAGACTATATAAGAC
AAGCATCAATGCCCGGCCCCAGTTAAGCAAAACACCCTGCCTTTGGCTCAGGACGGGTCCTGATT
TCAAGTATGTTGCTGGTTCAGAATCAAAAAATATTGATGAAAGCATTGATGCTGGCTTAAAGTCC
TAAACAAGGCTAGACACGAACACGAACATCAGTACCTGGGTCAGGCTCAACAGATCTTGTTGGGT
CAGGAGATCCTGGTGATTCGGAAGGAGAAGAAGAAGGCTCGAAAG
Found at i:349154 original size:14 final size:14
Alignment explanation
Indices: 349131--349163 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
349121 TATAAGTTAA
*
349131 GTTAAGTTAAATAT
1 GTTAACTTAAATAT
349145 GTTAACTTAAATAT
1 GTTAACTTAAATAT
349159 GTTAA
1 GTTAA
349164 GTTCTTCCTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.42, C:0.03, G:0.12, T:0.42
Consensus pattern (14 bp):
GTTAACTTAAATAT
Left flanking sequence: Indices 348631 -- 349130
TTCTAGTTTGAACAAAACATCAATCTGAGCTTGAGTTCCGATTGGAGTTTTGAGTCAATTGAGGA
GTATGTTTATTTATTTCTGGTTCTAGGACCAGTAGTTCTGGGGATCGACTCGGCTCTCTCAAATT
GTTTCTCATTATTAAGAAAAGGTAACAAAGATAAAATACGAGCTTGTTTTATAGCAATAGTAATT
AATCGTTGTTGTTTCAAGGTCAATTTATTCACCCGTCTAGATAATATTTTTCCTTGTTCACTAAT
AAATCGACTAATTAAACTCATTTTCTATAATCGATTCGATCCCCCGATCCAATTGGGGACAAACG
CCTACGAAAGGATCGCTTGTATTTACGAAAAGGTTGCTTGGATTTATCCATGGTTTATTCCTTAT
CTCTAAAATTAGATTTCTTTATTCATTTCAGATCTGACCGAAATAGGCTTTGATTCGCATCGTTT
ATATTATACATATAATATAAATAAATATATATATATATAAGTTAA
Right flanking sequence: Indices 349164 -- 349663
GTTCTTCCTCTTCCTGTTCCTTGGAAAGATCGCGCACACGTTCCGTTCCATCTATTTCTTTATTT
CTCCATGAATCGTATGCTTGTGACAATAGTGACAAAATTTTCTCAATTCTAATCGACTGGACGTA
TTGTGTCGATTCTTTTGAGTAATATATCTAGAAATACCCGGCGATTCTTTATTGACACCATTTCG
GACACAACTGGTACATTCCAAAATAACTCTGACTCTGACATCTTTACCCTTGGCCATGAACCCCC
TTTTGATTTGGATCGACTTAACTTCTTCTATTTTCGACCCGAACTGAAGAAGAATAAAAGAACAA
AAAAATAAATAAGAAAATCAATAGAAGTTACTAACTTGAAATTCCATTTTCATTTCTAAAGCTAA
AGATTTCGTTGTGTTGTATTAATTGTAATTATATAATTACAATTAATATTAATAGAGTAATAGTA
ATAATAAATAATTAAGTAATAATAAAGTAATACAATTTCTTTCTA
Found at i:360473 original size:5 final size:5
Alignment explanation
Indices: 360465--360499 Score: 52
Period size: 5 Copynumber: 7.0 Consensus size: 5
360455 CCTAGCCTAT
* *
360465 AGTAG AGTAT AGTAG AGTAG AGTAT AGTAG AGTAG
1 AGTAG AGTAG AGTAG AGTAG AGTAG AGTAG AGTAG
360500 TCGGCCTAAC
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
5 26 1.00
ACGTcount: A:0.40, C:0.00, G:0.34, T:0.26
Consensus pattern (5 bp):
AGTAG
Left flanking sequence: Indices 359965 -- 360464
TGATTCATTTGGATCGACGAGCCATTTCGTGAATCAATGGAATGTCTGTCTATCCATATCTATTC
TATCTTTATATGACGGGCCATAGTGAAGTCTTTTATGGCATGATATAATCGCGCCTAGTAGCCAC
ATATCAGCTGCGCTCAATATGCGGGATTTCCGTTGGATCAGATCTTTCGCTTTGACGAAAGCTTT
TGGACCTAGCGAAAAGGACTCTAAGCCTTCGCGCAAGCAAGCAAAGTAGAAGCAAGACGAGGAAG
CGGAGCTGTCGTAGAAGCGGTAGCTTCCCCCGACCTACTACAATACAACAGTCGCGACCATGAAA
AAAAAAGGCCCAACGCTTCTAGAGTTCGCTGCTTTTCCCAGGCCGGAGAAGGGCAACTACTGATT
GATCGCCTTTGTTTGATATGTGTTCAATTCAGTACAATACAAACTACAACTACACCAAAGCGGAA
GGGCCACTCACTATAGAAGCTAGAAGTAGCCTAGCCCTAGCCTAT
Right flanking sequence: Indices 360500 -- 360999
TCGGCCTAACCGTCATGGTCACGACATGTTGTTGATATTGATTGAGTTGGAGGGAGTCAGAGACT
ACCACGGAATCCATCCATAAACCGTCACCCCGGTGACCTTCGTCACCAAAGCGTCACGACAGTTT
CCAAAGGCTCCCCGTCATCTCATCTCCAGTGGGGGGCCCAAGAAGTCGGAGCACGTAGGAATGCC
GACCACTACATAAGCCGCTGGCGGAGAAAGCTCTTCGAGCTTCCCTTCATTCGCTTCGCGGGAGT
CGCACACAGCACATAGCTGGAAGTCAGAGGGCCCGTACTACCTGCCTAACCCTTCGCTCCGAGGG
ACCGTAGAACGGAAAGCGCCTTCTAAACAACTCGGCAGAAGGGAAGGGGCCCATGTATTTGCATG
ACCCCTGCAGATTTTACCCTACCTACACCCGGAGCCAATCCCCTAGCGGTCCTGCCACCACGCCG
CAGAACGGGAGCTCGTGTGGAACCTTGGATTTCTGGCGTAACAGC
Found at i:360485 original size:15 final size:15
Alignment explanation
Indices: 360465--360499 Score: 70
Period size: 15 Copynumber: 2.3 Consensus size: 15
360455 CCTAGCCTAT
360465 AGTAGAGTATAGTAG
1 AGTAGAGTATAGTAG
360480 AGTAGAGTATAGTAG
1 AGTAGAGTATAGTAG
360495 AGTAG
1 AGTAG
360500 TCGGCCTAAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.40, C:0.00, G:0.34, T:0.26
Consensus pattern (15 bp):
AGTAGAGTATAGTAG
Left flanking sequence: Indices 359965 -- 360464
TGATTCATTTGGATCGACGAGCCATTTCGTGAATCAATGGAATGTCTGTCTATCCATATCTATTC
TATCTTTATATGACGGGCCATAGTGAAGTCTTTTATGGCATGATATAATCGCGCCTAGTAGCCAC
ATATCAGCTGCGCTCAATATGCGGGATTTCCGTTGGATCAGATCTTTCGCTTTGACGAAAGCTTT
TGGACCTAGCGAAAAGGACTCTAAGCCTTCGCGCAAGCAAGCAAAGTAGAAGCAAGACGAGGAAG
CGGAGCTGTCGTAGAAGCGGTAGCTTCCCCCGACCTACTACAATACAACAGTCGCGACCATGAAA
AAAAAAGGCCCAACGCTTCTAGAGTTCGCTGCTTTTCCCAGGCCGGAGAAGGGCAACTACTGATT
GATCGCCTTTGTTTGATATGTGTTCAATTCAGTACAATACAAACTACAACTACACCAAAGCGGAA
GGGCCACTCACTATAGAAGCTAGAAGTAGCCTAGCCCTAGCCTAT
Right flanking sequence: Indices 360500 -- 360999
TCGGCCTAACCGTCATGGTCACGACATGTTGTTGATATTGATTGAGTTGGAGGGAGTCAGAGACT
ACCACGGAATCCATCCATAAACCGTCACCCCGGTGACCTTCGTCACCAAAGCGTCACGACAGTTT
CCAAAGGCTCCCCGTCATCTCATCTCCAGTGGGGGGCCCAAGAAGTCGGAGCACGTAGGAATGCC
GACCACTACATAAGCCGCTGGCGGAGAAAGCTCTTCGAGCTTCCCTTCATTCGCTTCGCGGGAGT
CGCACACAGCACATAGCTGGAAGTCAGAGGGCCCGTACTACCTGCCTAACCCTTCGCTCCGAGGG
ACCGTAGAACGGAAAGCGCCTTCTAAACAACTCGGCAGAAGGGAAGGGGCCCATGTATTTGCATG
ACCCCTGCAGATTTTACCCTACCTACACCCGGAGCCAATCCCCTAGCGGTCCTGCCACCACGCCG
CAGAACGGGAGCTCGTGTGGAACCTTGGATTTCTGGCGTAACAGC
Found at i:403559 original size:3 final size:3
Alignment explanation
Indices: 403545--403580 Score: 54
Period size: 3 Copynumber: 12.0 Consensus size: 3
403535 TTATATATAT
* *
403545 TTA TTT TTA TTA TTA TTA TTA TTA TTA TTA ATA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
403581 ATCTAATAAT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Left flanking sequence: Indices 403045 -- 403544
TTTTCTATCTATCCTTAGAAGTAGGGCGAGTAATAAGCTCGATCTGGATCCGAAATGGACTATGG
ATCTCGATCTATTGGTCTATGCGGGATTCGCCCTCTTCTCCAGTCTCAGTTCTGGTTCGAACAGA
TCCCTTTCCGCCTTTGAATTAGCTACTACTACTACTGATGAATGCACCTTCGCTGCACTCGGCCG
CTTTCAGGGGGAGTGGGGATGGCAGGGAAGGGCATATCTTTGCCGTGATCCCCACGTTCAACTGT
TAATCCGTACCTATCCACCCGATGTGATAGAGCGATACTCTGTTCGATTCCCCTTTGATCCGATG
CCTACTACCTAATAGAAAGGCAGCCAGCAGTCCATGGCTAGCTGATATATCACGGTTTCACCATC
AGAGGGAGGAGATGGAAAGAAAGGAGTCGATCACCTAGCCGATCCCGAATAGCCCGATCTTTATT
TCATTTCAACCGATCCGCCGGGTCATAACCTAAAATTATATATAT
Right flanking sequence: Indices 403581 -- 404080
ATCTAATAATAATAATAAATATTATAATAATATATAATAATTAGATTAATTAATAATTACTTTGC
TTTGATTCTGAATATCTGCTTCGACTACTGGAACATTTCTTAGAAACCATATTGACGGATACTAA
AAACAAACCTTTTTTTCTCTATTCCTTACTTGTGGTATCTTCATTCATTCAGTCATTCCTTCGTT
TTATAGCCTGTTGTGCTTGTTTTCTTTTGCTTGTTCTGTTGGAACATTGAGTAAATCAACCTTAT
TATGTAATAATTTTTCATTCAACAAGGTATGGGTATCTTCTCACTTAGCTTGACTAGACAGTTAG
TTAGTTCAAAAGGAAAAAGAGTAAATTGACTTCTATTGAGACCTCTTCTTGGATGAAGAATCAAG
TGACTTGTTAAAAGCATACTTCTAACTCGAACTATTTCATTACGGAGTACCTCAAGCCCCGCCTC
GCCGTTAGCTTCATATCCTTTTTTACGGAACTCTAGCTTGTGCCG
Found at i:403619 original size:18 final size:18
Alignment explanation
Indices: 403573--403619 Score: 53
Period size: 18 Copynumber: 2.7 Consensus size: 18
403563 TTATTATTAT
*
403573 TAATAT-TAATCTAATAA
1 TAATATATAATATAATAA
*
403590 TAATA-ATAAATATTATAA
1 TAATATAT-AATATAATAA
403608 TAATATATAATA
1 TAATATATAATA
403620 ATTAGATTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
17 6 0.24
18 17 0.68
19 2 0.08
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.40
Consensus pattern (18 bp):
TAATATATAATATAATAA
Left flanking sequence: Indices 403073 -- 403572
AGTAATAAGCTCGATCTGGATCCGAAATGGACTATGGATCTCGATCTATTGGTCTATGCGGGATT
CGCCCTCTTCTCCAGTCTCAGTTCTGGTTCGAACAGATCCCTTTCCGCCTTTGAATTAGCTACTA
CTACTACTGATGAATGCACCTTCGCTGCACTCGGCCGCTTTCAGGGGGAGTGGGGATGGCAGGGA
AGGGCATATCTTTGCCGTGATCCCCACGTTCAACTGTTAATCCGTACCTATCCACCCGATGTGAT
AGAGCGATACTCTGTTCGATTCCCCTTTGATCCGATGCCTACTACCTAATAGAAAGGCAGCCAGC
AGTCCATGGCTAGCTGATATATCACGGTTTCACCATCAGAGGGAGGAGATGGAAAGAAAGGAGTC
GATCACCTAGCCGATCCCGAATAGCCCGATCTTTATTTCATTTCAACCGATCCGCCGGGTCATAA
CCTAAAATTATATATATTTATTTTTATTATTATTATTATTATTAT
Right flanking sequence: Indices 403620 -- 404119
ATTAGATTAATTAATAATTACTTTGCTTTGATTCTGAATATCTGCTTCGACTACTGGAACATTTC
TTAGAAACCATATTGACGGATACTAAAAACAAACCTTTTTTTCTCTATTCCTTACTTGTGGTATC
TTCATTCATTCAGTCATTCCTTCGTTTTATAGCCTGTTGTGCTTGTTTTCTTTTGCTTGTTCTGT
TGGAACATTGAGTAAATCAACCTTATTATGTAATAATTTTTCATTCAACAAGGTATGGGTATCTT
CTCACTTAGCTTGACTAGACAGTTAGTTAGTTCAAAAGGAAAAAGAGTAAATTGACTTCTATTGA
GACCTCTTCTTGGATGAAGAATCAAGTGACTTGTTAAAAGCATACTTCTAACTCGAACTATTTCA
TTACGGAGTACCTCAAGCCCCGCCTCGCCGTTAGCTTCATATCCTTTTTTACGGAACTCTAGCTT
GTGCCGTAGACGACCTTCCCACTAGTGTGAGAGGAAACTCTCGAT
Found at i:441010 original size:12 final size:12
Alignment explanation
Indices: 440993--441041 Score: 89
Period size: 12 Copynumber: 4.1 Consensus size: 12
440983 AAATCAAGAC
440993 ATCAATTTTCAA
1 ATCAATTTTCAA
441005 ATCAATTTTCAA
1 ATCAATTTTCAA
441017 ATCAATTTTCAA
1 ATCAATTTTCAA
*
441029 ATCAATTATCAA
1 ATCAATTTTCAA
441041 A
1 A
441042 ATTGGATTTT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
12 36 1.00
ACGTcount: A:0.45, C:0.16, G:0.00, T:0.39
Consensus pattern (12 bp):
ATCAATTTTCAA
Left flanking sequence: Indices 440493 -- 440992
GAGATTATCCTAAGGGCTGGCAGAGAATATTTATTTATGCTGTAAAAAAAAAAGTCTTCTGAAGC
CAAATGCTCTTGGATGGGCAGTTGAATAGGGAGAGAAAGAATTTTTTTCTCCCTCATATTTCATA
AAGTTTATCACTTTGAGGTCATGAAAACAGTGTGAATTTTGAAAAATTCTTGCATGCATCTCTGA
GGAGAGTGGCACGGCCAAACATCATCCCAGAAGCGAATCCGCTTACCATTGCCCAACCAAAGTCT
AGCCCAAGTTCTGCCTGATGAAAGTCTCTCTGTACCAAATAAGACCTTTCCAGATGCAGGATATT
TAAGGGGTTGGGTTGGTCAATCCATTTTAGCCATTGGAGAGGTACTTAGCAGCCAAAGATGAGGA
ATACGAATAGCTTTTTCTTTTCCTTTTGAAATCTCCATAGCCACTTCATAAGAAGGGCTGGCTTG
GTTGAAGTCCACCTCCTTCGTTAAGGTAATTGAAAAAATCAAGAC
Right flanking sequence: Indices 441042 -- 441541
ATTGGATTTTATAAATAGAAAAGGCGAGGCCCTGTTTCAGACAAAGAATGGGACAGGGGAAGGGG
GATAGGTGAGGCGGGCCCCCTTCAACCAGATTACTTTACTAGCTAGAATTCATTCTTCAACAGTA
CAGGAACTGGTTTAACAAAAGGAGTCTCGAACTACAGTGATCTGATACCTTCTTCCCTTGGTCTG
GGAGGTAGGTTATGTAGGCTTACAACTGTTCATCCTTATTTTCATGTAGGTTGTTCGATCGCAAA
TGGCCAAATAATCGATTAGTAGTACGCCTGATATTGCCAGAATACCTTCTCCCTCTTGGAAACTG
GCTAAAAAAAAGGGGGGAACTTTTCCCATCTTACTTCTCTTTGCAATTTTCCGCTTTCTTGCCTT
ATTATGGGAGTACAGTGTAGACTGGATAGTATTAAGCATTGGTGAAAGCTTTAACCTTACATCAG
TGCCTAGGGCCTACTGAAGCGCTGCAGATCCTAGCAGAGTCTCAT
Found at i:453387 original size:12 final size:12
Alignment explanation
Indices: 453367--453396 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
453357 CGCATAAAGA
453367 TTATATATTTAT
1 TTATATATTTAT
*
453379 TTATTTATTTAT
1 TTATATATTTAT
453391 TTATAT
1 TTATAT
453397 TTATATATAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (12 bp):
TTATATATTTAT
Left flanking sequence: Indices 452867 -- 453366
GAAAGACCCGATTAGGGTTAGGGAGAAGGACCACCAGCTTTCCGGCGATAAGATGAAACAATCCG
GCAGATAATTCTGGCCGGGTTCGATCATCGCTCTGATACCATGTGAAGAAAAAACAGAGTTCAGA
GGGAGAAGATTCATTACTTACCAAAAAGAGGGATCTTAAGGGTAAATAAAAGCGTACTCTATTGA
CAGTACGACAAGTATACAATGGAACAATATATAAAAAAAAATCCCTAAACATAAAAAAAAATTTT
CAAACAAATACATGTCTCAACATTGTAGGCCGCCTTGTGAGTCTCCTATAGAACAGAGGCATAGA
CTCACTTCAGAGGACGGCGAGTTCATTGAAGATTGTCTCAGTTCAGCAGCATGGTTGGGAGTAAC
TAACGTGTATATAACCATCACACGACCCGACATTGCCTATGTTGTTGGAGTCGTGAGTAAATTCA
TGCAGAAGCCAAGAACGAACGATACATCTAGATGCCGCATAAAGA
Right flanking sequence: Indices 453397 -- 453896
TTATATATATAAATAAATAATCTTTAGGAAAACGTTCTATCCACTTACAATATAACAAAAGGAGA
GAGAGGGATTCGAACCCTCGATAGTTCGTTGTTCAGAACTATACCGGTTTTCAAGACCGGAGCTA
TCAACCACTCGGCCATCTCTCCCAGAGGTAATCTCTATTTTATTCTTACGAATAGAACATTTATT
CCTACGAATAGAACATGACCATATTAGATGATACACTAACTATCCGTAGAAACATCCCAGATGCG
AATTCATATTTCGATGTATCTATCTGTATACTATATGCATAGTATATATGCATGATCCAGTATGT
TTGTTTGTGAAGAAAATACTAAACTTCCCTCGACTCCATGTCCGAATAGAGTGGTAATTAATTTT
ACCGAATCAATTGATTCATGTCAAATCCCTCCATGATGCATTTTATTACAATTTTGACTAAGCGA
GGGATCAAATGGTATAGTTCATTTGTTGGTAGCTTGGAGGATTAC
Found at i:453407 original size:12 final size:11
Alignment explanation
Indices: 453366--453406 Score: 50
Period size: 10 Copynumber: 3.8 Consensus size: 11
453356 CCGCATAAAG
453366 ATTATATATTT
1 ATTATATATTT
*
453377 ATTTATTTATTT
1 A-TTATATATTT
453389 ATT-TATATTT
1 ATTATATATTT
453399 A-TATATAT
1 ATTATATAT
453407 AAATAAATAA
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
9 1 0.04
10 12 0.46
11 3 0.12
12 10 0.38
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (11 bp):
ATTATATATTT
Left flanking sequence: Indices 452866 -- 453365
AGAAAGACCCGATTAGGGTTAGGGAGAAGGACCACCAGCTTTCCGGCGATAAGATGAAACAATCC
GGCAGATAATTCTGGCCGGGTTCGATCATCGCTCTGATACCATGTGAAGAAAAAACAGAGTTCAG
AGGGAGAAGATTCATTACTTACCAAAAAGAGGGATCTTAAGGGTAAATAAAAGCGTACTCTATTG
ACAGTACGACAAGTATACAATGGAACAATATATAAAAAAAAATCCCTAAACATAAAAAAAAATTT
TCAAACAAATACATGTCTCAACATTGTAGGCCGCCTTGTGAGTCTCCTATAGAACAGAGGCATAG
ACTCACTTCAGAGGACGGCGAGTTCATTGAAGATTGTCTCAGTTCAGCAGCATGGTTGGGAGTAA
CTAACGTGTATATAACCATCACACGACCCGACATTGCCTATGTTGTTGGAGTCGTGAGTAAATTC
ATGCAGAAGCCAAGAACGAACGATACATCTAGATGCCGCATAAAG
Right flanking sequence: Indices 453407 -- 453906
AAATAAATAATCTTTAGGAAAACGTTCTATCCACTTACAATATAACAAAAGGAGAGAGAGGGATT
CGAACCCTCGATAGTTCGTTGTTCAGAACTATACCGGTTTTCAAGACCGGAGCTATCAACCACTC
GGCCATCTCTCCCAGAGGTAATCTCTATTTTATTCTTACGAATAGAACATTTATTCCTACGAATA
GAACATGACCATATTAGATGATACACTAACTATCCGTAGAAACATCCCAGATGCGAATTCATATT
TCGATGTATCTATCTGTATACTATATGCATAGTATATATGCATGATCCAGTATGTTTGTTTGTGA
AGAAAATACTAAACTTCCCTCGACTCCATGTCCGAATAGAGTGGTAATTAATTTTACCGAATCAA
TTGATTCATGTCAAATCCCTCCATGATGCATTTTATTACAATTTTGACTAAGCGAGGGATCAAAT
GGTATAGTTCATTTGTTGGTAGCTTGGAGGATTACAAACATGACT
Found at i:453590 original size:21 final size:21
Alignment explanation
Indices: 453565--453607 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
453555 TAATCTCTAT
*
453565 TTTATTCTTACGAATAGAACA
1 TTTATTCCTACGAATAGAACA
453586 TTTATTCCTACGAATAGAACA
1 TTTATTCCTACGAATAGAACA
453607 T
1 T
453608 GACCATATTA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.37, C:0.16, G:0.09, T:0.37
Consensus pattern (21 bp):
TTTATTCCTACGAATAGAACA
Left flanking sequence: Indices 453065 -- 453564
TACGACAAGTATACAATGGAACAATATATAAAAAAAAATCCCTAAACATAAAAAAAAATTTTCAA
ACAAATACATGTCTCAACATTGTAGGCCGCCTTGTGAGTCTCCTATAGAACAGAGGCATAGACTC
ACTTCAGAGGACGGCGAGTTCATTGAAGATTGTCTCAGTTCAGCAGCATGGTTGGGAGTAACTAA
CGTGTATATAACCATCACACGACCCGACATTGCCTATGTTGTTGGAGTCGTGAGTAAATTCATGC
AGAAGCCAAGAACGAACGATACATCTAGATGCCGCATAAAGATTATATATTTATTTATTTATTTA
TTTATATTTATATATATAAATAAATAATCTTTAGGAAAACGTTCTATCCACTTACAATATAACAA
AAGGAGAGAGAGGGATTCGAACCCTCGATAGTTCGTTGTTCAGAACTATACCGGTTTTCAAGACC
GGAGCTATCAACCACTCGGCCATCTCTCCCAGAGGTAATCTCTAT
Right flanking sequence: Indices 453608 -- 454107
GACCATATTAGATGATACACTAACTATCCGTAGAAACATCCCAGATGCGAATTCATATTTCGATG
TATCTATCTGTATACTATATGCATAGTATATATGCATGATCCAGTATGTTTGTTTGTGAAGAAAA
TACTAAACTTCCCTCGACTCCATGTCCGAATAGAGTGGTAATTAATTTTACCGAATCAATTGATT
CATGTCAAATCCCTCCATGATGCATTTTATTACAATTTTGACTAAGCGAGGGATCAAATGGTATA
GTTCATTTGTTGGTAGCTTGGAGGATTACAAACATGACTATTGCTTTCCAATTAGCTGTTTTTGC
ATTAATTGCGACTTCATCAATCTTACTGATTAGTGTACCCGTTGTATTTGCTTCTTCTGATGGTT
GGTCAAGTAACAAAAATATTGTATTTTCCGGTACATCATTATGGATTGGATTAGTCTTTCTGGTA
GCTATCCTTAATTCTCTCATCTCTTGAACTTATTTGGTATTTCCC
Found at i:454525 original size:12 final size:12
Alignment explanation
Indices: 454510--454536 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
454500 TACTGACTAC
454510 TATAGTAGTCAG
1 TATAGTAGTCAG
454522 TATAGTAGTCAG
1 TATAGTAGTCAG
454534 TAT
1 TAT
454537 GGTCCCGCGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.33, C:0.07, G:0.22, T:0.37
Consensus pattern (12 bp):
TATAGTAGTCAG
Left flanking sequence: Indices 454010 -- 454509
AAAATATTGTATTTTCCGGTACATCATTATGGATTGGATTAGTCTTTCTGGTAGCTATCCTTAAT
TCTCTCATCTCTTGAACTTATTTGGTATTTCCCCGATCCAAAAATGAAATGCCACTCCTTCTACC
TTCTAATAAATTCGGATTGTGAGACATTAAGATTCAATCTGAGTTACGAAAAAAAAATGATATTG
TTATTAATTGGATATAATAATAAGATTAAGATTATCTTAATTGAAATCTTACTGTACTTTACTAT
AGTATCTGAGTATCCGGCCCTGCACAAATATGATCCAGACGCATATATTATATATGATATATGTA
ATATATGTGTGGACATATGCGTGCGTATCAGGAACGAAGAAAATGCGGATATGGTTGAATGGTCA
AATTTCTCTTTGCCAAGGAGAAGATGCGGGTTCGATCCCCGCTATCCGCCCACGATGAAGTAATG
TACTATGAAAAAAAATGAGGTATGGTTGACTACTATACTGACTAC
Right flanking sequence: Indices 454537 -- 455036
GGTCCCGCGGAGTTCTTACTTTTTCATGTCTAAAATCCGGTTCATCCGATTACTACAGAGATGAA
CCCAACCCGGAATATGAACCGTAAAAGAAAATACCTATTAAACCGATCACAAGAATACCGGTTAC
AGTACCTATCAGCCAAAGAGGAATCCCTCCAGTAGTATCGGCCATTTCCCCCACTTTCCTCCACA
TTTCATCAAGTGGTCATGCTAGAGACAAAAACAGTCATAGATAATTATGAGGATAGTATCTTTCC
GAATGGGATAAGAGAATTCCTACTATTCTCTTTCTTTCTCTCAATTGAAGAAATAATTGGAAAAT
AAAACAGCAAGTACAAAAATGAGTAATAAACCCCAGTATAGACTGGTACGATTCAATTCAACATT
TTGTTCATTCGGGTTTGATTGTGTCATAGCTCTATAATTCGAATTAGGTTTATCGTTGGATGAAC
TGCATTGCTGATATTGACCCCAAGAAAAAAACGGTAGGTACAGCT
Found at i:455866 original size:6 final size:7
Alignment explanation
Indices: 455852--455946 Score: 60
Period size: 7 Copynumber: 14.1 Consensus size: 7
455842 TTGGTCGTAC
455852 AATAAAT
1 AATAAAT
455859 AA-AAAT
1 AATAAAT
455865 AATAAAT
1 AATAAAT
* *
455872 -TTATTAT
1 AATA-AAT
455879 AATAAAT
1 AATAAAT
455886 AA-AAAT
1 AATAAAT
455892 AATAAAT
1 AATAAAT
* *
455899 -TTATTAT
1 AATA-AAT
455906 AATAAAT
1 AATAAAT
455913 AA-AAAT
1 AATAAAT
455919 AATAAAT
1 AATAAAT
* *
455926 -TTATTAT
1 AATA-AAT
455933 AATAAAT
1 AATAAAT
455940 AA-AAAT
1 AATAAAT
455946 A
1 A
455947 CAAGAATAGA
Statistics
Matches: 67, Mismatches: 12, Indels: 19
0.68 0.12 0.19
Matches are distributed among these distances:
6 29 0.43
7 32 0.48
8 6 0.09
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (7 bp):
AATAAAT
Left flanking sequence: Indices 455352 -- 455851
CAGACATTCTGAGCTCCACAAATTTTTGTACATTCAAAACAAAAAAGAAATCGATTCCGTGAAAG
ATGGGATCAGTAAATGGAAAACTACGGATATTTCATCTTTGTGAGATCGTCCATTTTGTACCAAA
GGTGTATTTCGAGTATACCGAATCAGTATAGCTATCCTTCCTCTGGCACAGCAACGCAGTCTCGA
TGGGTACCGAAATACTACATAATTATTTTTTCTTCTTTTTTTGTTCCTTGTCTATGCATAACTGT
ATGTTATTCAATAGATCAATAGAAAATTCCTAAAATTCCTTATAAGGTGTTTCCATTATTGGCTT
CGTAATAGAAAGTAAAGATCTTGGAAAAGTTTGAATCAATGGGTTCTAATAATTCATGAAAGATA
TTATCATATTCAAAAATTTCAATTATATTGAAATCTATAAACCCTTTTTTGGTTAAAAGTTTTTT
TTGTTCGAATCTTTCATTTCATTTCAAGTAATTGGTTGGTCGTAC
Right flanking sequence: Indices 455947 -- 456446
CAAGAATAGATAATATTTAATGAAAGAAAGAGAACATAGTTGGAACAATCAATATTCGTGATGCA
ACAACGGTTGCATTAGATGCAAAACAAAGGTTCTTTCTTGACCGAACTACAAGTATGGAACTCCA
TGATATGGAAAGACAGAATATAGAACCTAAAAGGATAATGGAAGTTGTTCGTCTTTGAATCGAGT
TGGACCCTCCAAAAAGAAGAAAAATGAAAGTAAAGGTTTGATTTTTTTGATAGATCGTTTCGATA
TATCGTAGGGCACTTTTTTTCTTCTCATTCGAGATATTATGGGCAATTAACCAACCTATTAATGT
ACTGAATCCAATGAGTTAAAAAAAAAAGTCAAAGGTAATATCAGGTCGTTCGCCCCAAAATGGAT
TAGATCCTTTTTATTGAAAAAGAAAAGAAATGATCAAAATGGAAGTTCTTTTCAAATCAAATTTT
TTGATTTTATTCCAAAATGACTTAAATAGAATTTCATTTTTGAAT
Found at i:455882 original size:27 final size:27
Alignment explanation
Indices: 455852--455946 Score: 190
Period size: 27 Copynumber: 3.5 Consensus size: 27
455842 TTGGTCGTAC
455852 AATAAATAAAAATAATAAATTTATTAT
1 AATAAATAAAAATAATAAATTTATTAT
455879 AATAAATAAAAATAATAAATTTATTAT
1 AATAAATAAAAATAATAAATTTATTAT
455906 AATAAATAAAAATAATAAATTTATTAT
1 AATAAATAAAAATAATAAATTTATTAT
455933 AATAAATAAAAATA
1 AATAAATAAAAATA
455947 CAAGAATAGA
Statistics
Matches: 68, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 68 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (27 bp):
AATAAATAAAAATAATAAATTTATTAT
Left flanking sequence: Indices 455352 -- 455851
CAGACATTCTGAGCTCCACAAATTTTTGTACATTCAAAACAAAAAAGAAATCGATTCCGTGAAAG
ATGGGATCAGTAAATGGAAAACTACGGATATTTCATCTTTGTGAGATCGTCCATTTTGTACCAAA
GGTGTATTTCGAGTATACCGAATCAGTATAGCTATCCTTCCTCTGGCACAGCAACGCAGTCTCGA
TGGGTACCGAAATACTACATAATTATTTTTTCTTCTTTTTTTGTTCCTTGTCTATGCATAACTGT
ATGTTATTCAATAGATCAATAGAAAATTCCTAAAATTCCTTATAAGGTGTTTCCATTATTGGCTT
CGTAATAGAAAGTAAAGATCTTGGAAAAGTTTGAATCAATGGGTTCTAATAATTCATGAAAGATA
TTATCATATTCAAAAATTTCAATTATATTGAAATCTATAAACCCTTTTTTGGTTAAAAGTTTTTT
TTGTTCGAATCTTTCATTTCATTTCAAGTAATTGGTTGGTCGTAC
Right flanking sequence: Indices 455947 -- 456446
CAAGAATAGATAATATTTAATGAAAGAAAGAGAACATAGTTGGAACAATCAATATTCGTGATGCA
ACAACGGTTGCATTAGATGCAAAACAAAGGTTCTTTCTTGACCGAACTACAAGTATGGAACTCCA
TGATATGGAAAGACAGAATATAGAACCTAAAAGGATAATGGAAGTTGTTCGTCTTTGAATCGAGT
TGGACCCTCCAAAAAGAAGAAAAATGAAAGTAAAGGTTTGATTTTTTTGATAGATCGTTTCGATA
TATCGTAGGGCACTTTTTTTCTTCTCATTCGAGATATTATGGGCAATTAACCAACCTATTAATGT
ACTGAATCCAATGAGTTAAAAAAAAAAGTCAAAGGTAATATCAGGTCGTTCGCCCCAAAATGGAT
TAGATCCTTTTTATTGAAAAAGAAAAGAAATGATCAAAATGGAAGTTCTTTTCAAATCAAATTTT
TTGATTTTATTCCAAAATGACTTAAATAGAATTTCATTTTTGAAT
Found at i:457998 original size:13 final size:13
Alignment explanation
Indices: 457980--458005 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
457970 GTTCAGTTCC
457980 TATTATTATCAAT
1 TATTATTATCAAT
457993 TATTATTATCAAT
1 TATTATTATCAAT
458006 AATACAGTTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.08, G:0.00, T:0.54
Consensus pattern (13 bp):
TATTATTATCAAT
Left flanking sequence: Indices 457480 -- 457979
CGAGCTACCAAACTGCTCTACTCCGCGATGAAGAACTGGGAACCAATGGACGAAAAAAAATTGGA
TACACCCCTCTACCATATCTATACAAATAGAATAGTCCATTTATACAGAATGGTAAAGAGGGCCC
CTCTATGATCATAGATCATAGAGATCTATACAAATATGAAACGATATTTTTTTCCTTACCAACTT
GATCTTGTTGCGCCCGGTAACAAACATGCATGAACCATTTCTCGAAGTATGTGTCCAGATAGCCC
AAAGTCTCGATAGTTAGCTCTAGGTCTTCCAGTCAAAAAACAACGTCGATGAAGACGTATAGGTG
CACTATTACGTGGTGGGGATTGCAATTTTCCATGAATTTCCCATTTTTCACTCAACGATGGAACT
TCGCTTATTTTTTTTTTGAAGATCGACGAATCAAATGATATTTCTGTTCCAATTTCTGCCGCTTC
TTCTCCCTCTGAATCAAACTTTTTCTTGCCATAATGTTCAGTTCC
Right flanking sequence: Indices 458006 -- 458505
AATACAGTTCGGATCCTAGATGTAAAAATACAAGAAGGCAAATCCTCCCTCTCCATTGAAACAAA
TGAGATTGTTGCTGATACAGTACATAAAAAAAACTAAATTAACCAAATTTTCCTGATGTAGAGGC
AATCAAGAAAGCTGCATAAGTGAATATATAACCTACGGAAAAGTGGGCTAATCCAACCAATCTTG
CTTGCACAATGGAAAGAGCCACTGGCTTATCTCTCCATCGAATTAAATTAGCCAAAGGTGTGCGT
TCATGAGCCCATGCGTCAGTTTCAATCAATTCCTGCCAATATCCACGCCAGGAAATTAAGAACAT
AAATCCAGTAGCCCAAACAAGATGTCCAAATAAGAACATCCACGCCCATACCGATAAACTATTCA
TACCAAAAGGGTTATATCCATTGAGTTGTTGTGAAGAGTTTAACCATAGATAATCTCTTAACCAT
CCCATCAAATAAGTGGAGGATTCATTAAATTGTGAAACGTTACCC
Found at i:463360 original size:24 final size:24
Alignment explanation
Indices: 463328--463376 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
463318 TTTGGTATTC
*
463328 TACGTCCATTCTTACGTGAACCAA
1 TACGTCCATTCCTACGTGAACCAA
463352 TACGTCCATTCCTACGTGAACCAA
1 TACGTCCATTCCTACGTGAACCAA
463376 T
1 T
463377 TCTTGGTATA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.29, C:0.31, G:0.12, T:0.29
Consensus pattern (24 bp):
TACGTCCATTCCTACGTGAACCAA
Left flanking sequence: Indices 462828 -- 463327
GACGCTTACTGTCTACTCTTGATTCAACAAATTTCCACCGTAGTGTTCGAGTGGATCCTACTACT
TCCTCTCGAACCATACTATAATAATACTTATTATAATATTTGATCAGATCATTGAATCATTTATT
TCTCTTGAAATCTGTTTCATTCTTATTTCTACACACGTCTTTTTTTAGGAGGTCGACACCCGTGG
CATAGGTGTTACATCACGTACTAAACTTAATAGTATACCACTTCTACGAATGGCTCGTCATGCTG
CATCTCTTCCGAGACCAGGGCCTTTTATCATAACTTCTGCCCGTTGCATACCCTGATCAACTACT
GTACGAATAGCATTTACCGCTGCGGCTTGAGCAGCATAGGGTGTACCTCTTCTTGTGCCTTTGAA
TCCAGAAGTACCCGCGGAGGCCCAAGAAACCACCCGACCTCGTACATCTGTAACAGTTACAATGG
TATTGTTGAAACTCGCTTGAACATGAATAACTCCTTTTGGTATTC
Right flanking sequence: Indices 463377 -- 463876
TCTTGGTATAGCTTTTGTCATATTTTATCGTCTCATAAATATGAGTCAGAAATATACAGAAAGAA
AAGATACGGAGATATCCATTTCATGTTAAAACAGATCTTTTATTCTTACATGGGTCCTCCCCTTT
AGAAAAGAAAGTTATTTTTTAGAAAGATTACCCTTGTCTCTGTTTATGTCTCGGATTGGAACAAA
TCACTATAATTCGTCCGCGCCTACGGATCAGTCGACATTTTTCACAAATTTTACGAACAGAAGTC
CTTATTTTCATATTTCTTATTCCTTACCTTAATTCTGAATCTACTCTTTTGAAGAAAATAAGTTT
CTTAAATATTTTTTTTTTCACTTCGAATTGTGTCCCCATGAAAAGAATGTTTCAAAAATCACCTA
ATCGTTCGAATCTTTGTTGCGAAGTCTATAAATTATACGATCTTCGAGGCATGCGATTGCATGGA
TGCCGGTGTTTTGAAATCTTGGACTGACGTCTCTGCAGCTCTCTA
Found at i:467364 original size:9 final size:9
Alignment explanation
Indices: 467348--467422 Score: 54
Period size: 9 Copynumber: 9.0 Consensus size: 9
467338 AAGGTCATCA
467348 TCAATATCG
1 TCAATATCG
* *
467357 TCACTATCA
1 TCAATATCG
467366 TCAATATCG
1 TCAATATCG
467375 ---ATATCG
1 TCAATATCG
* *
467381 TCACTATCA
1 TCAATATCG
467390 TCAATATCG
1 TCAATATCG
467399 ---ATATCG
1 TCAATATCG
* *
467405 TCACTATCA
1 TCAATATCG
467414 TCAATATCG
1 TCAATATCG
467423 ATATCATCAA
Statistics
Matches: 48, Mismatches: 12, Indels: 12
0.67 0.17 0.17
Matches are distributed among these distances:
6 12 0.25
9 36 0.75
ACGTcount: A:0.33, C:0.25, G:0.08, T:0.33
Consensus pattern (9 bp):
TCAATATCG
Left flanking sequence: Indices 466848 -- 467347
TCTGTGTAATACTAATTGATAGGGCCTCATTGATAAGTACTACAAGATCTCGTGCATTGGAACCC
ATGGTTATGGACCCGAATACGTTAGTATGGAACATTTTCTTTTCCAAGTGAAATCCCCTAGTATA
TGAAAGAATGAAAAAGTGCTTTCGTTGTTGTGGAATAAGAAGCCTTCGTATCTTAATGCATGTAT
TTAATTTATTCGGAGCTATTAGAGCGGGATCCACTTTTTGGGGAATATGAGTCGAAGCAATAACA
AGAATATTTCTAGTGGAACATCTTTCACAATCCCTGGAGAGATAGTTCTCTAATAGACCGAGAGA
TAAGTAATTCGACTCATTCACATACAGATCATGAATGTTTGGAATCCATATTATGCAAGGAGACA
TTGCTTTTGCTAATTCGAATTGAAGGGTGATATCAAATCGGTCTATTTTCGGCGTCATATACATA
GTTAGCACATTCGTCATAGTTAGCAGCTCCGTATCAAGGTCATCA
Right flanking sequence: Indices 467423 -- 467922
ATATCATCAATAAGATAACCTTTAGGCTTGTCATCCAGGAACTTGTTCGGAAATACCGTAATGAA
AGGAACATAGGAGTTTCTCGTCCGGTATTTGACCAAATAGGATCGTCCAGTCTTAAAGAGTGCCG
CCATACGCATACCTCCTCTGGCGGAAGCCTCCTCCATCTCCGCTGCGATCTCGGCCTCCAAAGCG
TAGTATTCCGCGTCATCATCGTCCTACAGAATGAGAAAAGCCACTAAGGGTTCATTACGAAAACA
AAAGAAGGATAAAAGACAAAGAGAACATCCACTTTACCTCCTTCTTGCAGGTCCCAATTAGCGGG
TCATTTTTGATTTAAACTCCTCCAGTCAAGCCTCACTTTTTCAGCTTTGACCAGAACCGATTCAA
TCAATGCGACTTCGTCCCACCAGTCTTCAAGGAAGGAATATTCTGAGGCGGGCAAGGAAGGAAGA
GGCAAGATATATCTAGAATGTAGAAAGAGAATCTTCTCATTCAGA
Found at i:467365 original size:18 final size:17
Alignment explanation
Indices: 467344--467434 Score: 86
Period size: 15 Copynumber: 5.6 Consensus size: 17
467334 TATCAAGGTC
467344 ATCATCAATATCGTCACT
1 ATCATCAATATCGTCA-T
467362 ATCATCAATATCG--AT
1 ATCATCAATATCGTCAT
* * *
467377 ATCGTCACTATCATCA-
1 ATCATCAATATCGTCAT
*
467393 AT-ATCGATATCGTCACT
1 ATCATCAATATCGTCA-T
467410 ATCATCAATATCG--AT
1 ATCATCAATATCGTCAT
467425 ATCATCAATA
1 ATCATCAATA
467435 AGATAACCTT
Statistics
Matches: 60, Mismatches: 8, Indels: 13
0.74 0.10 0.16
Matches are distributed among these distances:
15 31 0.52
16 4 0.07
17 3 0.05
18 22 0.37
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.33
Consensus pattern (17 bp):
ATCATCAATATCGTCAT
Left flanking sequence: Indices 466844 -- 467343
TTCTTCTGTGTAATACTAATTGATAGGGCCTCATTGATAAGTACTACAAGATCTCGTGCATTGGA
ACCCATGGTTATGGACCCGAATACGTTAGTATGGAACATTTTCTTTTCCAAGTGAAATCCCCTAG
TATATGAAAGAATGAAAAAGTGCTTTCGTTGTTGTGGAATAAGAAGCCTTCGTATCTTAATGCAT
GTATTTAATTTATTCGGAGCTATTAGAGCGGGATCCACTTTTTGGGGAATATGAGTCGAAGCAAT
AACAAGAATATTTCTAGTGGAACATCTTTCACAATCCCTGGAGAGATAGTTCTCTAATAGACCGA
GAGATAAGTAATTCGACTCATTCACATACAGATCATGAATGTTTGGAATCCATATTATGCAAGGA
GACATTGCTTTTGCTAATTCGAATTGAAGGGTGATATCAAATCGGTCTATTTTCGGCGTCATATA
CATAGTTAGCACATTCGTCATAGTTAGCAGCTCCGTATCAAGGTC
Right flanking sequence: Indices 467435 -- 467934
AGATAACCTTTAGGCTTGTCATCCAGGAACTTGTTCGGAAATACCGTAATGAAAGGAACATAGGA
GTTTCTCGTCCGGTATTTGACCAAATAGGATCGTCCAGTCTTAAAGAGTGCCGCCATACGCATAC
CTCCTCTGGCGGAAGCCTCCTCCATCTCCGCTGCGATCTCGGCCTCCAAAGCGTAGTATTCCGCG
TCATCATCGTCCTACAGAATGAGAAAAGCCACTAAGGGTTCATTACGAAAACAAAAGAAGGATAA
AAGACAAAGAGAACATCCACTTTACCTCCTTCTTGCAGGTCCCAATTAGCGGGTCATTTTTGATT
TAAACTCCTCCAGTCAAGCCTCACTTTTTCAGCTTTGACCAGAACCGATTCAATCAATGCGACTT
CGTCCCACCAGTCTTCAAGGAAGGAATATTCTGAGGCGGGCAAGGAAGGAAGAGGCAAGATATAT
CTAGAATGTAGAAAGAGAATCTTCTCATTCAGAAAATGCCCCTTT
Found at i:467380 original size:24 final size:24
Alignment explanation
Indices: 467351--467427 Score: 154
Period size: 24 Copynumber: 3.2 Consensus size: 24
467341 GTCATCATCA
467351 ATATCGTCACTATCATCAATATCG
1 ATATCGTCACTATCATCAATATCG
467375 ATATCGTCACTATCATCAATATCG
1 ATATCGTCACTATCATCAATATCG
467399 ATATCGTCACTATCATCAATATCG
1 ATATCGTCACTATCATCAATATCG
467423 ATATC
1 ATATC
467428 ATCAATAAGA
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 53 1.00
ACGTcount: A:0.34, C:0.25, G:0.08, T:0.34
Consensus pattern (24 bp):
ATATCGTCACTATCATCAATATCG
Left flanking sequence: Indices 466851 -- 467350
GTGTAATACTAATTGATAGGGCCTCATTGATAAGTACTACAAGATCTCGTGCATTGGAACCCATG
GTTATGGACCCGAATACGTTAGTATGGAACATTTTCTTTTCCAAGTGAAATCCCCTAGTATATGA
AAGAATGAAAAAGTGCTTTCGTTGTTGTGGAATAAGAAGCCTTCGTATCTTAATGCATGTATTTA
ATTTATTCGGAGCTATTAGAGCGGGATCCACTTTTTGGGGAATATGAGTCGAAGCAATAACAAGA
ATATTTCTAGTGGAACATCTTTCACAATCCCTGGAGAGATAGTTCTCTAATAGACCGAGAGATAA
GTAATTCGACTCATTCACATACAGATCATGAATGTTTGGAATCCATATTATGCAAGGAGACATTG
CTTTTGCTAATTCGAATTGAAGGGTGATATCAAATCGGTCTATTTTCGGCGTCATATACATAGTT
AGCACATTCGTCATAGTTAGCAGCTCCGTATCAAGGTCATCATCA
Right flanking sequence: Indices 467428 -- 467927
ATCAATAAGATAACCTTTAGGCTTGTCATCCAGGAACTTGTTCGGAAATACCGTAATGAAAGGAA
CATAGGAGTTTCTCGTCCGGTATTTGACCAAATAGGATCGTCCAGTCTTAAAGAGTGCCGCCATA
CGCATACCTCCTCTGGCGGAAGCCTCCTCCATCTCCGCTGCGATCTCGGCCTCCAAAGCGTAGTA
TTCCGCGTCATCATCGTCCTACAGAATGAGAAAAGCCACTAAGGGTTCATTACGAAAACAAAAGA
AGGATAAAAGACAAAGAGAACATCCACTTTACCTCCTTCTTGCAGGTCCCAATTAGCGGGTCATT
TTTGATTTAAACTCCTCCAGTCAAGCCTCACTTTTTCAGCTTTGACCAGAACCGATTCAATCAAT
GCGACTTCGTCCCACCAGTCTTCAAGGAAGGAATATTCTGAGGCGGGCAAGGAAGGAAGAGGCAA
GATATATCTAGAATGTAGAAAGAGAATCTTCTCATTCAGAAAATG
Found at i:479912 original size:12 final size:12
Alignment explanation
Indices: 479897--479922 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
479887 ATAAATAAAA
479897 TAATATTTAATT
1 TAATATTTAATT
479909 TAATATTTAATT
1 TAATATTTAATT
479921 TA
1 TA
479923 TAATAATATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (12 bp):
TAATATTTAATT
Left flanking sequence: Indices 479397 -- 479896
CAGGGGAGTCCAATCAACAGATCTTTTTCCTCTCCTTTTCTATCCAATTGGTTTATGTTCGTTAT
AATTACAAGAGGGTAAAAAATCCTTTATTTTTGCAACTCGATCGCTCTTTTGACTTTGGAATAAA
TTTTCTTTATCAGTATACTGTTTCTTCTACACATCCGTCTCCAATCCATCAAATTTCATAATTAG
GATTCATTAAAAAAAAAAAGAAAGAAAAGAAATGGTCCACTCACAGAAGAACCCACCCTTTCCCG
CATCAGGCACTAATCTATCTTTAACGTCTAATTAGATCGGGTAATCATTCAAATTAAGAACAAAA
GCTCGTTGCTTTTTATTTCACCAGAATTAGAGCCATAGGGCTCTATCCATTTATTCACTAGACCC
AACTGTAAATGTGAATTTTTTTTTTCACTTCCAAACAAAAAGAAAAAAAAATTGTAACGATCCGG
TAAGGATAAACTCAAAGTTCTACTTAAATTAAATAATAAATAAAA
Right flanking sequence: Indices 479923 -- 480422
TAATAATATTTTATTACGACATGCTGTTTTTTCCATTCATTACCTTTGAGGATCAGTCGTGGTCT
TATAGACTCTACCAATAGTCTGGACGAATCTGTTGCTTCATCCAAATGTGTAAAAGATCATAGTC
GCACTTAAAAGCCGAGTACTCTACCGTTGAGTTAGCAACCCGAAAATAAAAAAAATAGGATATAT
ATGTAAAAAAGGTCAAAATAAAAAAATCAATTGAATAGCACTGCACGACCCCGTCAAAACATTGA
ACTAGAACAAATCGAAAAGAAAGATTTGTTTTTGTTTTTCAATTAAAAACACCAAAATACCAAAA
TGGACAGATCGGATTAAACAACAACAGATTCCCAATAGAGATGTCAAAATTGTGACAAACCGCCA
TTTTTTTTATCAATTTTCTTTTCTTTTTCGTTAAGAAAATACATCTTGTATGCCAGTAAATCCGG
CAGGGCAAACCCATCATTTGACTGAAGTGAAGGAAAGAAAAAACC
Found at i:533508 original size:16 final size:16
Alignment explanation
Indices: 533483--533527 Score: 51
Period size: 15 Copynumber: 2.9 Consensus size: 16
533473 GAGTACGCTT
533483 AGCC-CTTTTTTCTCC
1 AGCCACTTTTTTCTCC
533498 AGCCAC-TTTTT-TCC
1 AGCCACTTTTTTCTCC
*
533512 AGCCATGTTTTTTCTC
1 AGCCA-CTTTTTTCTC
533528 ACTTAACAAG
Statistics
Matches: 25, Mismatches: 1, Indels: 6
0.78 0.03 0.19
Matches are distributed among these distances:
14 8 0.32
15 9 0.36
16 6 0.24
17 2 0.08
ACGTcount: A:0.11, C:0.33, G:0.09, T:0.47
Consensus pattern (16 bp):
AGCCACTTTTTTCTCC
Left flanking sequence: Indices 532983 -- 533482
TGACTCCACGGAGCTAAAGCACTTTTTTATTATGAACTTTGAGCTAACCCTTTATTTGATTTGAC
TCAGTGGACTCCCGTTGTTGAAGCTTACTCGCACTAGCTAGATCCCTTCCAGACCACGAAGCTTG
ACAACATGTTGGTGCATTTCATTCGTGAGAGTGCCAAGTCAAGGGTGAGGACTGCGATACCGAAC
TCGACACATTTTTCGATACCTAGATCAAGAATGAATGAGACACATTTTGCGATTGCGATACCGAA
CTAGCAATCTTCTTGTCCTTTTTCTGTTGATCCGAGCGAAAAGAAGCCATCTTTTTCTTTCTTTT
TGCCTTGTTTTCTTTTGAAAAAGGATTGCCTTGCCCATTTCATCCACACCCTTAGCCACCTGCCA
TCTCACTGACCAAGAATTCCGTCTGACTGAAAAGATGGAAAGGATGTGTCTGTCCTGGTTGACAA
AAGTGGATTTTTCTATCAAAGAAAGGATTGGCTTGGAGTACGCTT
Right flanking sequence: Indices 533528 -- 534027
ACTTAACAAGAAAAGCGATTCGGAGTGCTTTTCACCCCACCACCTTCCTTTCACTTTTTTTTTAG
CTCAGCACAGGATTTTTCTCTGCAATGCAACTTTTTAACGCGATAAAGCGGCTGAATTCGCATGA
CTTTTGAGCCTAACTATACCGCCTAACCTCCGTGATCTTGCTACTCTTCTTCTACCGGAAAAGTG
CATTTGAGATCCCCTTGAGACGGCGATTCCATGATCTTCCTATTTCTCTTCAGAACGAATCGATT
CGATTTGATATACCGCAAAACCACCTCTTTTTCTGCCACCTGGTAAGCGCTTCTCCTGCTGCCAG
CCACCTGCCGCTCCTCTTTCTTTGGCTTGTGCCTCGGCTTTGCTGCCCTCTCTCTCTGTTCCTCT
TCTTCTGTCTCTTTCTTCTGAGAAAAAAGGTAGCGGACAGAGACAAACTGAAAGGGAGTGAAAGT
CCTCATCGATTCTCTCTTCTCCGGATCCTGATCCCTCTCTCTCTA
Found at i:542837 original size:23 final size:23
Alignment explanation
Indices: 542819--542865 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
542809 AGAAATGGAT
542819 TCAAACTCATTTCTAAAATCCCA
1 TCAAACTCATTTCTAAAATCCCA
542842 TCAAACTCATTTCTAAAATCCCA
1 TCAAACTCATTTCTAAAATCCCA
542865 T
1 T
542866 GTATTCCCTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.38, C:0.30, G:0.00, T:0.32
Consensus pattern (23 bp):
TCAAACTCATTTCTAAAATCCCA
Left flanking sequence: Indices 542319 -- 542818
TCTGCGTAGGCGGTGGTGCTCCTCTGGCCCTTCCTTCGATCCACCGCCTCTTCCTTAGTCTTTGG
TTGATCAGGCCCTTCTTACCCGGATGTGAATTCGGAATGGAGAGTCTTGAACCACCGGTCTTTAT
CGAAAAAATCTCCTTCAGATGGTTTATTTAATCCGATGAAAGCTTCAAGCTAGGAGCCCTCCTTC
CCCTCTTTGACCTCTATAGCTATAGCTGGTGAGATGGGCTTGCATTGGAATTTGAAACACCACAA
CTGGACACATTTTTGACAACGATTCTATTCTATCAATATCAAATAGATAGCAGCGTCAAATTGTC
ATATCGGTGGTTGGGAAGGGAAGAAAGACTTTTTTCAGACTGATACAGGGTAGGAAGATCCATGT
CTAAAGGAATCGGTATTCAGACTCATCCGTTCAGCTCTAGCGACGTGAAGATCATCAATCGCCGT
CTTACGAGAAGCCCTACTATTTATTATCATAAGAAAGAAATGGAT
Right flanking sequence: Indices 542866 -- 543365
GTATTCCCTGGGAAAAACCCAGGTATCGTATCATATCACTAGAGAACAAGCTTCCAGCTAAGCTG
TTTGTTTTAGCTGGCTGGAAACGGAACAAAGGAAACTAAAAAAGCAAATAATGATTCTATCATTA
GTAAATAAGGCACTCTCCCTAGTGAAATGCAGGAATAGAAATCAACAAGATAGTAGGTTCCATGA
AACTCATCCAATCCCATCTCATATTCGGGTTCCCTCGAGAATAGGTATAGGTATGGCATTTCTAG
ATTCAACGCAGCTACCATTACTTTCCTCACATGTTTATACCATTCCAAAAAAGACTCCCACTCCA
GCTCAAGAAAGAAAAGTTGGAACTTATTCCTTAACCCCTGAAGGGTTCCGCTTTAAGGGACCGGC
TGTAGGGACTGAAGAGAAAGGTCACATTATGGCTCCTCCTGTTTGGCCTACGCTTGCCGCGAACC
TTACAGGGGCCACTATAGAATAAGTACTTTGGAAAAGTAGACAGA
Found at i:548800 original size:16 final size:16
Alignment explanation
Indices: 548779--548810 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
548769 TTTATTTGAT
548779 AGAAATTCTCTATTCC
1 AGAAATTCTCTATTCC
548795 AGAAATTCTCTATTCC
1 AGAAATTCTCTATTCC
548811 TAATTACTGC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.31, C:0.25, G:0.06, T:0.38
Consensus pattern (16 bp):
AGAAATTCTCTATTCC
Left flanking sequence: Indices 548279 -- 548778
TGATAACTCTAGAAGTTTTGATTTGGTTATGATCCAAAGAGGAAAAAGAATAATTATTCCATGAT
AAAATAGAGTAGAGTAACCATTCGTTTTGTTTACATGACGTGTATACGTCATGCCATACAATGGA
AATAAAAATCCATGGGACGATTCATGAATTTGTAATAGATCCATGGGGTAGCTGATGAGAGAAGT
TGGTGTTGAGAAATAGGAAATTTTAAAGGAATTATTCCTATGGAACCATTGATCGGTCATACCTG
TACTGCAATAATATGAATGACTCGCTATTCACTCGGTTTCTGGTCAATAATAAGATTACGTAGGA
GAGATGGCCGAGTGGTTCAAGGCGTAGCATTGGAACTGCTATGTAGGCTTTTGTTTACCGAGGGT
TCGAATCCCTCTCTTTCCGTTTCTGTTAATTCACCAACGTGACCGACCACAATGTATCAAATCAA
ATAACAACTGATACCATTATTCCAGCAATAAGACTTTTATTTGAT
Right flanking sequence: Indices 548811 -- 549310
TAATTACTGCGGTACGTAAATACAAATATCGGAAAGAGCAAAAAAGAAAAAAATCCTACTGCGGA
TCTATTTGTAATATGTGAATGAGAAAAATGCGGATCAAGGCCCTTAGATCTATTTACTTCGTCGA
AAAGAGGGCAAAATTCTCTGAATCTTTCTTTGTTATTTTCGTTAGGTTCAAGTCTGGCGGGAATA
ATATTCTACGACTAACAACTCATTTATTTTCAAACCGATCCATTTACTATCTATTATTTGATTTA
CTAATCCTTTATATTGGAACGAGTCAATAGTCAAATGTTTTGGCAATTCCTCAGGGGGGGGTGAA
GCAATATAATTTTGAATCAGAGCTTTTGATCTTTGTTTATCCTTCGTAGTAATAATATCTCGGGG
TTTGCAACGATAACTTGGTATATCCACTATACGACCATTAACTAAAATATGTCTATGGTTAACTA
ATTGCCTAGCTCCAGGAATGGTCGAAGCCATACCCAATCGAAAAA
Found at i:616324 original size:16 final size:16
Alignment explanation
Indices: 616303--616337 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
616293 AGACAGAGAA
616303 CCGCTATAGCCAGTAC
1 CCGCTATAGCCAGTAC
*
616319 CCGCTATAGCTAGTAC
1 CCGCTATAGCCAGTAC
616335 CCG
1 CCG
616338 ATACAGAGCT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.23, C:0.37, G:0.20, T:0.20
Consensus pattern (16 bp):
CCGCTATAGCCAGTAC
Left flanking sequence: Indices 615803 -- 616302
AGGAGTGAATTGAGCAATCAACCTTCCCTTAAGCCTAAAGCCTAGCTTACCGTAACGGAACTAAC
GAAAGTGGCTGTATCGGTTTACGTAAGCACCTGCGGTGAGCTAAGACACAAGACACAGCACCTTT
GCGTCAAGTCAACTGCGCCCGCTAACCAAAACAGGAATTGATCTACGCTTCCCTTAACGGAAAGT
GGATGTCTAACTTAAAGCGACTCGCCCAAGAGTCCCTGCTTTTTCTCTCGGCTGCTTTCCCTGAA
GCGGCTGTCTCTGCTGTTCAGGCTGTCTCGTCTCGTACAGTCTCGGCTTGGCTTCCGGTGCTTGC
CCCTTCCAATGTTGGGCTGTCTCTGCGGTGCCGGCTCCCGGTTTTGTTCTCTCTGTCTTCGGTTT
AGGTTCCTTTCCCTTCACCGGGACCGCTCGATAGACAAAGCAGATAAGATACCGCTAGCCCGCAG
ACAGCTCAGGGAAGAGAACCGAGACAACCGGCAGCAGACAGAGAA
Right flanking sequence: Indices 616338 -- 616837
ATACAGAGCTCTTTCCGCTCGCACCGTTCAGTTCAGTAAGGAAAGTAAGTAAGCTCGTCGGAAAG
CAAGTCAAGTAGTTTCGGTAATAGAGTGCAAGAACCTTTGAAAAAATCCTTCTTGTTCGGGTAGG
CGCTCGTGATAGATAAAACGACTTCTGCTGTTCTGGGCTTTGGAAGTCTTAGAGAAAGCCTCCTT
TCTGCAGGTGCCGTAGTTAACTTCCGGAAGCAAGGCGCGGTACACTTTGAATACACTCGTTCAGT
TGCGTTAGAAGAGGGGAAAGCAAAAGCGCTTAAAAAAGATTACAACTTAGCCGTTGTGAAAGCAA
CAAAAGGCAGAGAGAAGGAACTCAGAACGCGGCTTAGAGAAAGACAGAAGGAACACAACCTCTTT
TCGAGACAGGAAGTCAGTTCAGTAAGTTAGTTTAGTCAAAGAACATTTGCTTTTCACTTCCGAAT
TTGATATATTAGCGGTTGGTTCTCACTTTGAAGTCGGCTTAGAGA
Found at i:633825 original size:17 final size:17
Alignment explanation
Indices: 633803--633840 Score: 76
Period size: 17 Copynumber: 2.2 Consensus size: 17
633793 GGACTAAATC
633803 TAAATAAAGTAAAGTAT
1 TAAATAAAGTAAAGTAT
633820 TAAATAAAGTAAAGTAT
1 TAAATAAAGTAAAGTAT
633837 TAAA
1 TAAA
633841 AAATTTTATC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.61, C:0.00, G:0.11, T:0.29
Consensus pattern (17 bp):
TAAATAAAGTAAAGTAT
Left flanking sequence: Indices 633303 -- 633802
TGTACTGTGTCTGAAATGCATCCTGTCTATTCCTATCCTTCAACCCCTCTATACTTTTTTGAAGT
TTTTTGAAAACTTTTTTCTTTTTTTTTGATATATATATGAAAACTTAACACTCTTTTTTGAGTGA
GAGAAAGCACAATATGAACAAACAAGAAAGAAAAAAGAAACAAAAAAAGGGAACATAATCCCACT
TTAGTTCTTTACCATAACCATACATATATTTTTTACCCATCTCTAAAAATGGAGGTATATATCTA
TACGCTAGATGAATAAGTATGTATCATGCTCTTGACTATTAACGAATATATATCCTGATCTTTCT
CTCTTAATTTGTATGAATATCTATCCGATATATTATTCATGTGTCAGGAACCAGATTTGAACTGG
TGACACGAGGATTTTCAGTCCTCTGCTCTACCAACTGAGCTATCCCGACCATTTCCCGTGCATCA
TCCTAGTAGAGTACTTGTATCTATGTCAATTAAAGGGACTAAATC
Right flanking sequence: Indices 633841 -- 634340
AAATTTTATCTAATAAATGTAAGGATAATGATATGGACTGTGAATGATTCAATAATAGAGATTCC
TTGCCCATATATGTTCATTTGTACAGGTATCGTATCTATCCAAATTGGGATAAGATCCAAAGATT
TCTCTTCGGATCCATTTGTGAAAGAGTAGAGTGAATGAGAAAGAAAGATAGTGAATTTTGTTTGA
ACCACTGATGAAAAAAAGAGGATAAATAGTTAGGAAGTCAAATGGACTTTTTGTTGGGGATAGAG
GGACGTCGAACCCTCACGATTTCTAAAGTCGACGGATTTTCCTCTTACTATAAATAAAATTAATA
TTCCCGCGCGCGGCACACGAACTATGACTATCTGAAATTGACGGCAAAAGACAAAACAAAGAAGG
AAACTCAATTATTCATCCATAAATTCCGATTCTACTGGTTAACCGACAACCCTTTTCGTCATACG
ATCAGTCAAATCTGAACTAAAATAGTACCTTTATACCAAAGGCGA
Found at i:643136 original size:19 final size:20
Alignment explanation
Indices: 643083--643164 Score: 68
Period size: 19 Copynumber: 4.3 Consensus size: 20
643073 ATTAGATTTT
*
643083 TTATAATCATAGT-TTATA-A
1 TTATAAT-ATATTATTATATA
*
643102 TTATAATATA--AATATATA
1 TTATAATATATTATTATATA
*
643120 TTATTAT-TATTATTATATA
1 TTATAATATATTATTATATA
*
643139 -AATAATATATTATTATATTA
1 TTATAATATATTATTATA-TA
643159 TTATAA
1 TTATAA
643165 ATTTATATTA
Statistics
Matches: 50, Mismatches: 6, Indels: 12
0.74 0.09 0.18
Matches are distributed among these distances:
17 6 0.12
18 14 0.28
19 24 0.48
20 2 0.04
21 4 0.08
ACGTcount: A:0.46, C:0.01, G:0.01, T:0.51
Consensus pattern (20 bp):
TTATAATATATTATTATATA
Left flanking sequence: Indices 642583 -- 643082
GCCATATCCCCTTTTGATTTGAGACCAAGATCCAGTTGGAATTCCACCCATCTCTTTCATTTATT
TTGGAACCGTTGAATTCATTATATAATGATTCCCATATCGAAAAAGTGTATGCTATTTGATTTTT
TTGGCGATCCTCTATCAGTTTATTTCTATTGGATAAACCTTGTTTCAATCAGAAATGATTCTATC
ATTGATGTATCCGCAATTCAATATGGATAGATATATCCCATATATATATGTTTCTCCCTCCCTTT
CTTTTTTACAGTGCGATTTGGAATACTGGAACGGTCGATATTCATTCTTCTTTTTTTTCGTCCTA
TCTCTTCCTTTTCCGAATGAAACCAGAAGAATGTCTCATTCTAATTTGGATTGTATCTTTATACT
TATCTTATCTTTTCTTAGGACCGATCCGCTCGCTATACGCTATAATTATAGCTATAACTGCTTGA
CTTTAATAAATAAAAAATTTTTATATTAAGAAATAATTAGATTTT
Right flanking sequence: Indices 643165 -- 643664
ATTTATATTAAAATAATGTATAAAATTAATAAAAAAAAATCGAATTTATAAATAATCATTTTTTT
TATTAATATGATAGAATGAAAATTCTACTAATTAGTATGTGACTAATTAGTCATATATTTCGATT
AGAAAAATATCTATTAGAAAAATCGAAATATATTAATTCTATTAGTTATATTAGTTCTATATTAT
TCTTTTAGGGGAGAAGAAAGACAAGAAAGAGGAGACTATTTCAACAAGGCTACGAGTTCTGGCAT
ACTTGACTTTAGATTGGATGTCGTACTTTCCTTTATAAAGGATGTCCTACTTCTATTTAATATTT
CACCGAACCCTACTTCACTCAATCAATCTCCTAATCTTAATCCTACCGCCCTTACTACAACTAAA
CCACCAACAGCGGGAGAGCCGACATTACTATAGAATGATAGATGTGCAGCGCATTCTGTAAGGCT
AACAACTCATTCTTCAGCAACTCATTCTCTAACAGGAAAAGCAAA
Found at i:643137 original size:27 final size:28
Alignment explanation
Indices: 643096--643163 Score: 104
Period size: 27 Copynumber: 2.5 Consensus size: 28
643086 TAATCATAGT
* *
643096 TTATAATTATAATATAAAT-ATATATTA
1 TTATTATTATTATATAAATAATATATTA
643123 TTATTATTATTATATAAATAATATATTA
1 TTATTATTATTATATAAATAATATATTA
643151 TTA-TATTATTATA
1 TTATTATTATTATA
643164 AATTTATATT
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
27 27 0.71
28 11 0.29
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (28 bp):
TTATTATTATTATATAAATAATATATTA
Left flanking sequence: Indices 642596 -- 643095
TTGATTTGAGACCAAGATCCAGTTGGAATTCCACCCATCTCTTTCATTTATTTTGGAACCGTTGA
ATTCATTATATAATGATTCCCATATCGAAAAAGTGTATGCTATTTGATTTTTTTGGCGATCCTCT
ATCAGTTTATTTCTATTGGATAAACCTTGTTTCAATCAGAAATGATTCTATCATTGATGTATCCG
CAATTCAATATGGATAGATATATCCCATATATATATGTTTCTCCCTCCCTTTCTTTTTTACAGTG
CGATTTGGAATACTGGAACGGTCGATATTCATTCTTCTTTTTTTTCGTCCTATCTCTTCCTTTTC
CGAATGAAACCAGAAGAATGTCTCATTCTAATTTGGATTGTATCTTTATACTTATCTTATCTTTT
CTTAGGACCGATCCGCTCGCTATACGCTATAATTATAGCTATAACTGCTTGACTTTAATAAATAA
AAAATTTTTATATTAAGAAATAATTAGATTTTTTATAATCATAGT
Right flanking sequence: Indices 643164 -- 643663
AATTTATATTAAAATAATGTATAAAATTAATAAAAAAAAATCGAATTTATAAATAATCATTTTTT
TTATTAATATGATAGAATGAAAATTCTACTAATTAGTATGTGACTAATTAGTCATATATTTCGAT
TAGAAAAATATCTATTAGAAAAATCGAAATATATTAATTCTATTAGTTATATTAGTTCTATATTA
TTCTTTTAGGGGAGAAGAAAGACAAGAAAGAGGAGACTATTTCAACAAGGCTACGAGTTCTGGCA
TACTTGACTTTAGATTGGATGTCGTACTTTCCTTTATAAAGGATGTCCTACTTCTATTTAATATT
TCACCGAACCCTACTTCACTCAATCAATCTCCTAATCTTAATCCTACCGCCCTTACTACAACTAA
ACCACCAACAGCGGGAGAGCCGACATTACTATAGAATGATAGATGTGCAGCGCATTCTGTAAGGC
TAACAACTCATTCTTCAGCAACTCATTCTCTAACAGGAAAAGCAA
Found at i:643157 original size:8 final size:8
Alignment explanation
Indices: 643116--643163 Score: 51
Period size: 8 Copynumber: 5.5 Consensus size: 8
643106 AATATAAATA
643116 TATATTAT
1 TATATTAT
643124 TATTATTAT
1 TA-TATTAT
*
643133 TATATAAATAA
1 TATAT---TAT
643144 TATATTAT
1 TATATTAT
643152 TATATTAT
1 TATATTAT
643160 TATA
1 TATA
643164 AATTTATATT
Statistics
Matches: 34, Mismatches: 2, Indels: 8
0.77 0.05 0.18
Matches are distributed among these distances:
8 19 0.56
9 8 0.24
11 7 0.21
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (8 bp):
TATATTAT
Left flanking sequence: Indices 642616 -- 643115
AGTTGGAATTCCACCCATCTCTTTCATTTATTTTGGAACCGTTGAATTCATTATATAATGATTCC
CATATCGAAAAAGTGTATGCTATTTGATTTTTTTGGCGATCCTCTATCAGTTTATTTCTATTGGA
TAAACCTTGTTTCAATCAGAAATGATTCTATCATTGATGTATCCGCAATTCAATATGGATAGATA
TATCCCATATATATATGTTTCTCCCTCCCTTTCTTTTTTACAGTGCGATTTGGAATACTGGAACG
GTCGATATTCATTCTTCTTTTTTTTCGTCCTATCTCTTCCTTTTCCGAATGAAACCAGAAGAATG
TCTCATTCTAATTTGGATTGTATCTTTATACTTATCTTATCTTTTCTTAGGACCGATCCGCTCGC
TATACGCTATAATTATAGCTATAACTGCTTGACTTTAATAAATAAAAAATTTTTATATTAAGAAA
TAATTAGATTTTTTATAATCATAGTTTATAATTATAATATAAATA
Right flanking sequence: Indices 643164 -- 643663
AATTTATATTAAAATAATGTATAAAATTAATAAAAAAAAATCGAATTTATAAATAATCATTTTTT
TTATTAATATGATAGAATGAAAATTCTACTAATTAGTATGTGACTAATTAGTCATATATTTCGAT
TAGAAAAATATCTATTAGAAAAATCGAAATATATTAATTCTATTAGTTATATTAGTTCTATATTA
TTCTTTTAGGGGAGAAGAAAGACAAGAAAGAGGAGACTATTTCAACAAGGCTACGAGTTCTGGCA
TACTTGACTTTAGATTGGATGTCGTACTTTCCTTTATAAAGGATGTCCTACTTCTATTTAATATT
TCACCGAACCCTACTTCACTCAATCAATCTCCTAATCTTAATCCTACCGCCCTTACTACAACTAA
ACCACCAACAGCGGGAGAGCCGACATTACTATAGAATGATAGATGTGCAGCGCATTCTGTAAGGC
TAACAACTCATTCTTCAGCAACTCATTCTCTAACAGGAAAAGCAA
Found at i:655257 original size:15 final size:15
Alignment explanation
Indices: 655234--655263 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
655224 TTTTTAGCAA
655234 GCTTCAAAGAGTAGG
1 GCTTCAAAGAGTAGG
*
655249 GCTTTAAAGAGTAGG
1 GCTTCAAAGAGTAGG
655264 CGGTTCGTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.33, C:0.10, G:0.33, T:0.23
Consensus pattern (15 bp):
GCTTCAAAGAGTAGG
Left flanking sequence: Indices 654734 -- 655233
GATACTATAAGTAGGACAAACAAACGCCTTAAAAGAGAAATGAAAGGCATTTTAGCATTTTTCCA
CTTATCCAATTCTTGGCATTTGTATTTGAGAGAGAGAGAGCTATGCTTAGGTCAGTTCCTTCAGT
AAACTTATTTGGTAAGTCAGAAGTTCACTTTAGGTAAGTAAGTAGTCCCGTAGAAAATTCATAAA
ACATGCGCAGATCTGGCACTTGAGGAGGTCAATCTTTCATGTTGGAAGCTACTGCTAAGGTACTC
CCCCTCATCTATAAAGGATAGGCAATTGAGAGAGAATAGGGCGATAGCGATAGACACAGGAACTG
AAATAGACTAAAAGATGACTTCCGTAGAGGAGAGGGGAAACCCGCTTAGATAGGGCGATAGCCCG
GTTTTTATTGAATATCCTTTCCTGTGCTTGTCTTGTATTGAGGTATACCGAAGATATGAGTCAAA
GTAGGTAACAGAAGGGGTAGTGAGGGATTGCTTTTTTTTTAGCAA
Right flanking sequence: Indices 655264 -- 655763
CGGTTCGTATGTTTCTATGACCCCCAAGACGGAGCGAGACGGATACGCAGAGCAAGAGCTCTTAA
AGTCTACCCGGGCGGGATTCTTCATTCTTCGATCAGGGGCGGGCGCGGGCTTCTTCCCTTATATA
CGATGACATAGATAGAGCCTCCTTCTTTGATCCATTCATTGATCGACTATGAGGGGGCTGTTCGC
CTTTTGAATCGACAGTAGAGTAGGTTTGATCTTGCTTTCTCAATCTTTCTCTGATCCTAGCCGTG
TAGTAGATCCGGCTTTATTCGGCTAAAAAGAGGTGTGTGTGGCCGTCGTATCTGCCCGCCCCCTT
CTTCATTCATCCATTTAGGTCAGAATGGATCCAGGGAACCTGGCTCGGGAACAGCCCAGACTAAT
CACAGTAAGAGAGTCTAATCTCTGAAATATAGCATTTTATCTCCCTAGTAGTAGTAGTAGAAGGC
TTAGTATCTGACTTGATCCAATAGAGTCAGAACACACAGTAAGTA
Found at i:692275 original size:21 final size:21
Alignment explanation
Indices: 692251--692290 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
692241 ATGTAGCTGG
692251 GCCAGTAAAAGACAAGTAGAA
1 GCCAGTAAAAGACAAGTAGAA
* *
692272 GCCAGTTAAAGACGAGTAG
1 GCCAGTAAAAGACAAGTAG
692291 GCAGGGTACT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.45, C:0.15, G:0.28, T:0.12
Consensus pattern (21 bp):
GCCAGTAAAAGACAAGTAGAA
Left flanking sequence: Indices 691751 -- 692250
TATCTCTAAAGCTGCGGATTACAGCTCCTGACTCAACAAGTTCAAAGTCTGAAGTATGAGTCTTG
TTTGTGACATTAAAGAATGAACATTCAATTCAAAGGAATGGGACAGACTGCTGCTTGCTATTACT
GACTGCGGCTGCCGACCGAAGAACTGAAGATCTTCAATCTATGTTTGAGTGCTCTAGCGAAAGAA
AAGAATTTAGAATGCTAAAATGACTTCTAAAAATAGGATAGGAAGATTCTTTTCCATTTATTTAT
GAAATTACGTATCAATATACATTCCCTTTCCGTCAACTAAAGTCTGTTCGTTTCGTCCGTCAAAA
TGAAATGGCAATAACTCATCTCGGGCAAGAACCAACTACTAAGCGGTCGTTCGGGCTCTATTCCC
TCGGTCATGGCGAGGGGAAAGGGAAGGCATACCTTTGAAAGATTTACAGCCTAGCAAGGACTACG
CTGGCGAGTGACGATTGGCCGAGGGGAGTTCCATCATGTAGCTGG
Right flanking sequence: Indices 692291 -- 692790
GCAGGGTACTAAGAAGCCAGTGGGGTACGTAAACGGGGACAGATCACATGGTTTTGTACTGGTCA
GCTTTGGGCTGGCGAGTGACGATTGGCTGAGGCCCTCGTGGTGGAGTACTCTCTGACAGAATTGA
CGCTTCGCTTGGGCGCTCTATTATTGCCTCCTATTCCTGAGGGGGTGATCGAGGTTAAGCCGCGT
GGCGGACTATTCGCTTTTTTTTGGAGGGTGGGCCTTTCGTACTATAGTAGGCTTCAGCGCACTTC
AATCTAGTGGATTGGTTCAATAATATGGGTTTGAAATGATCCATGTTACGGAACCAAGACACAGC
TGGGTATAGGGCCTCCAACGCCTATAAATAGCAGGCAAAGGGAGACGGGGCCGAGGCAAGAAAGA
TGGATATCGCTGGAAGACTTGAGAGAGTTGAGCAAGAAATAGGAGAGGTGGAAAACGAGAAGCTC
CAACGGGAGCAAATCCTACATGCCTTTTTAGAGCATATGCCTCCC
Found at i:692974 original size:31 final size:31
Alignment explanation
Indices: 692936--692997 Score: 106
Period size: 31 Copynumber: 2.0 Consensus size: 31
692926 GATAATGAAA
692936 AAGTCGTTACTGTATCTTCCGTCTGTCTACT
1 AAGTCGTTACTGTATCTTCCGTCTGTCTACT
* *
692967 AAGTCGTTATTTTATCTTCCGTCTGTCTACT
1 AAGTCGTTACTGTATCTTCCGTCTGTCTACT
692998 GGTTTTTCCA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.16, C:0.24, G:0.15, T:0.45
Consensus pattern (31 bp):
AAGTCGTTACTGTATCTTCCGTCTGTCTACT
Left flanking sequence: Indices 692436 -- 692935
CTCTATTATTGCCTCCTATTCCTGAGGGGGTGATCGAGGTTAAGCCGCGTGGCGGACTATTCGCT
TTTTTTTGGAGGGTGGGCCTTTCGTACTATAGTAGGCTTCAGCGCACTTCAATCTAGTGGATTGG
TTCAATAATATGGGTTTGAAATGATCCATGTTACGGAACCAAGACACAGCTGGGTATAGGGCCTC
CAACGCCTATAAATAGCAGGCAAAGGGAGACGGGGCCGAGGCAAGAAAGATGGATATCGCTGGAA
GACTTGAGAGAGTTGAGCAAGAAATAGGAGAGGTGGAAAACGAGAAGCTCCAACGGGAGCAAATC
CTACATGCCTTTTTAGAGCATATGCCTCCCGTCGATCCAATTCTCATAGAAGAGCGTATCAGCCT
TCTCCAGAGACAAATAAGTTTTCTCGAAGAGAGGAAGAGGGCGCTGCTCAAAGAACAGCAAGCGC
TCATTGTACGGGCGGTCACCCTCGGTGACCGTGGGGATAATGAAA
Right flanking sequence: Indices 692998 -- 693497
GGTTTTTCCAAGTTGTAATTGGCTCAGAGAGCTCTAGCTCTCCTTATTAGTATTATTATGGTTAA
TGGTCCGTTATCTAAGTTGTAATTGGCTCAGAGAGCTCTAGCTCTCCTTGTATTGTATTATAAAT
AAATTTTTTTTAATGGTCCTTTAATAGTATCTTCCAACGCTCAACTCACGGCAAAGAGAAAACGA
CCCGGTTCCATTACTTTCCATTTTTTTCTGGATAAGCACGGCCGGGGAAATGGTTTTATACGCAA
TTTCTCAGTCCTAAAACGAATCTACGTATTAACAAGGTGTTTACTCATCCAACGTGGAGAAAGTG
CTTTCTATTTTCTTTAACAGGTCGAACCCTCTCTGAAGACCTTGTGACTGCTATTGAAGACCGAA
ACCCCTTGGTACTGAGTGAACGAATGAAGCGGGCTGGGGAGGTGAAAAACAACTTCTTCTTTCGA
CGGTCGAGCTTTGAAAAGTCTCTCATCAATCCACTACTTTTTTTT
Found at i:713347 original size:12 final size:12
Alignment explanation
Indices: 713330--713354 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
713320 TAAATAATCT
713330 TATTATTCTTAA
1 TATTATTCTTAA
713342 TATTATTCTTAA
1 TATTATTCTTAA
713354 T
1 T
713355 GATAATCAAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.08, G:0.00, T:0.60
Consensus pattern (12 bp):
TATTATTCTTAA
Left flanking sequence: Indices 712830 -- 713329
CTCCAATCTGAGTTTTGCTCAAATCTCGAATAAATTCAAGGACATATTCGAAGAAATTCTGACCG
TCGGTCGGAATGGTTTGTGGATTCCGAACAGCTATGATGACTGAACCTAATAAGATAGCAATTAC
GACCCAAGAAGTGATAAGTACTTGGGCATGGATTTGTAAACCTCCTATTTGCCAATAGAAATGTT
GGCCTACTTCTACACCCGATATATCGTATAACCCTTTGAGTGTTTTAATTGAACATGGTATAACA
TTCATATTGTCCTCTGACAGAAATTGAACTTCAAAAAAGAAATTATTTTGATTCAACCATCTATT
TCTCAACTAACTAACTTGAATCATTAATCGTAAATAAAATTTACGATACCAAGAAATTACATAAC
ATCATAACATAATATCAATATCCCCAGTACTTTTTTTATCTCTTTTTTCAAATTCAAAAATAGTA
ACCGATCCAATAAATCTATGGAGTTGCCAAATAATTAAATAATCT
Right flanking sequence: Indices 713355 -- 713854
GATAATCAACGATTTCTTATATAACTAGAACGACCCTCACAAATTGCAGATACTAATTTTTTAAG
AATCAATCGGATTGAAGCTATAGCGTCATCGTTTGCTGGAATCGAAATATCTGCGAGATCTGGGT
CACAATTTGTATCGATTAAACAAATTGTCGGAATCCCCAAAATGACACATTCTCAAAGAGCCGTA
TATTCTTCTTGCTGATCAACGATGATCACAATATCAGGCAACCCCGTCATATATTTGATCCCACC
GAGATATGTTTGCAAGGTAGATAATTTTCTCTTCAACATTGCTGCATCTCTTTTGGAGAGACAGT
TGAGTTTCCCCATCTTTTGTTCTGCTCTTAAGTCCCTGAACTTGTGAAGTCTCGTTTCCGTAGTG
GACCAATTCGTTAACATACCACCAAGCCATTTTTTATTAACATAATGACACCGAGCCCTTATTGC
AGCTGATGCTACTGAATCCGCTGCTTTATTTTTTGTACCTACGAT
Done.