Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_017755
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 413530
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Found at i:6409 original size:56 final size:56
Alignment explanation
Indices: 6323--6433 Score: 168
Period size: 56 Copynumber: 2.0 Consensus size: 56
6313 ATTGGCTTAA
* *
6323 CTTGCTACTTGACTCAAATCAGCCACTTGGCTTAACTTGATCGTCTTCGACTTGCT
1 CTTGCTACTAGACTCAAATCAGCAACTTGGCTTAACTTGATCGTCTTCGACTTGCT
* * * *
6379 CTTGCTACTAGGCTTAAATCGGCAACTTGGCTTAACTTTATCGTCTTCGACTTGC
1 CTTGCTACTAGACTCAAATCAGCAACTTGGCTTAACTTGATCGTCTTCGACTTGC
6434 AACTTGGCTT
Statistics
Matches: 49, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
56 49 1.00
ACGTcount: A:0.20, C:0.27, G:0.17, T:0.36
Consensus pattern (56 bp):
CTTGCTACTAGACTCAAATCAGCAACTTGGCTTAACTTGATCGTCTTCGACTTGCT
Left flanking sequence: Indices 5823 -- 6322
AGCAGGGTGGAGGTAGTGGAGGAGTTTACTAGCAAGCTATACTCCCTTATAGAATAGAGGCGTCC
CGCCTTGGTAATACAATATACAACATGTGTAAGGAAGAATGAACATTGCTTCATGGTAGCAAGTT
CGTGGCTCCATTGGAGGGGGGGGATGGAAATACGTTTACCCACAAAGAGTGTAAGGAACACCGAA
GGTGCCGCCGAAGTAATCTCTCATGGAAAGAAAGCCGGCGTATTTTATGAGTATGATAGTAGAGG
CAAGCAGCCGTACTTGCTGGTAAAGCAAAAGTACTTTCCGATAAGTAAGCAGCAGTATTGGCCTG
TAAAAGAAAAACAAAAGTACTTACTTTCCAATGAGTAAAAAGAAGACGGGACGCCCTAGGAAGTG
GTAAGTCCAGCATGTAGAGTGAAGTGAATGTGGATTGGTAAATATTACGGGAAGAAGGCACTTAG
TAGGCAGGGCATGAAATGAAAACGAATCAGGTTGGATTGGCTTAA
Right flanking sequence: Indices 6434 -- 6933
AACTTGGCTTTAATTTTTTTTACTTGCCACCTTGTCTGGCAACTTTACTTTCACACAAAAGCCAA
TTCGCCAGTTTAATCAAAGTATGAGTTTAAGCAATGAAACCCTTTGACAAAGGAAACATATGTCA
TCCAAACAACGTTAGAGTTAGTGTAGCTTAAGCCCATAGGCTTAAGCTACACAAAATATAGGGGG
TTATATATTAGTTGCTTTAGCCCTAGCTAAAGCAACTGGCGGGTGAGAAAAACATCTGTCATCCG
AACAACCTTAGAGTTAGTGTAGCATTTGCCGAAGGCAAAGCTACAGTTATACGGACGGAGGGTTT
AATATTTAGCCTCCTTTAGCTAAGGCTAAAGCAACTAAGGGTTATCCTACATATATACGCTTCGG
CATAGCTAAAGCTACTGTAATACAACCCTCCTCTAGATGTAGTTTAAGCGTTAGCTTAAGCTACA
CCTGCAATCAACATTAGCCCCGCCGCTGGCATTTGTTGAGGCAAA
Found at i:7056 original size:17 final size:17
Alignment explanation
Indices: 7002--7056 Score: 51
Period size: 17 Copynumber: 3.3 Consensus size: 17
6992 CTTTTTTTTT
* *
7002 TTTATACTCGACATAGC
1 TTTATACTAGCCATAGC
* *
7019 TTTATTA-AAGCTATAGC
1 TTTA-TACTAGCCATAGC
7036 -TTATACTAGCCATAGC
1 TTTATACTAGCCATAGC
7052 TTTAT
1 TTTAT
7057 TCAATTCATA
Statistics
Matches: 29, Mismatches: 6, Indels: 6
0.71 0.15 0.15
Matches are distributed among these distances:
15 2 0.07
16 11 0.38
17 14 0.48
18 2 0.07
ACGTcount: A:0.31, C:0.18, G:0.11, T:0.40
Consensus pattern (17 bp):
TTTATACTAGCCATAGC
Left flanking sequence: Indices 6502 -- 7001
GCCAGTTTAATCAAAGTATGAGTTTAAGCAATGAAACCCTTTGACAAAGGAAACATATGTCATCC
AAACAACGTTAGAGTTAGTGTAGCTTAAGCCCATAGGCTTAAGCTACACAAAATATAGGGGGTTA
TATATTAGTTGCTTTAGCCCTAGCTAAAGCAACTGGCGGGTGAGAAAAACATCTGTCATCCGAAC
AACCTTAGAGTTAGTGTAGCATTTGCCGAAGGCAAAGCTACAGTTATACGGACGGAGGGTTTAAT
ATTTAGCCTCCTTTAGCTAAGGCTAAAGCAACTAAGGGTTATCCTACATATATACGCTTCGGCAT
AGCTAAAGCTACTGTAATACAACCCTCCTCTAGATGTAGTTTAAGCGTTAGCTTAAGCTACACCT
GCAATCAACATTAGCCCCGCCGCTGGCATTTGTTGAGGCAAATAGTCAGTCGCCAACTCGTTTGT
GACCCACACTTTAGCTAGCTCAAAAATGAAATAGCCTTTTTTTTT
Right flanking sequence: Indices 7057 -- 7556
TCAATTCATAGCTTATAGCCATAGCTTCCTTTTCTATGCCAGCTCCTTCCTATAGCTTCCCTAGC
CTGAGCCAATATGTTTGTAACATATGCTATATTATCAGTAGCTGTTGCCAATTGGTTCGTGACCT
GAATCTGCTATAGTATAGGCGTAGCCGAGCCGTTGCCAATTGGTTTGTGACCTGAATTTGCTGTA
GCCAGCATAGACATAGCCGTTGCTACAGAATGAAAATGTTTGTAACCTATGCAAGCATCAGTGGG
GCCGAGCCGAGAGGCAAGTGGCAGTAACGCTCGGCCCTTTAGTTCGTTTGTAGTGAATGGATGGG
CAGAGCGGATAATGGTGAGAAAGCTCGGCCCCTTCGTTGATTTGGTAGCAGCCTGGGGCCGAGCG
AACTAACAGTGATACGCTCGCTCGGCCCTTTTGTTAGTCCATCTATATTAAATTGTTCGTTAGTC
CATCCATATTTGATGGATGGCTGGGACCGAGCAAACAAATGGTGA
Found at i:9866 original size:32 final size:32
Alignment explanation
Indices: 9825--9885 Score: 113
Period size: 32 Copynumber: 1.9 Consensus size: 32
9815 TGGAACGTTC
9825 TTGCCTACCAGTAGATGATTGTCATTTGGGAA
1 TTGCCTACCAGTAGATGATTGTCATTTGGGAA
*
9857 TTGCCTACCAGTAGATGATTGTCCTTTGG
1 TTGCCTACCAGTAGATGATTGTCATTTGG
9886 CAAATTGGCA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.21, C:0.18, G:0.25, T:0.36
Consensus pattern (32 bp):
TTGCCTACCAGTAGATGATTGTCATTTGGGAA
Left flanking sequence: Indices 9325 -- 9824
AGAAAGAATAATAAAAAAGACAAGAGAGGAATCAGAGGGAAAACCCGTTGGGTTTGTTTCAGTAA
AGTTCGTGGTGAATAAACAAAGCTTGGCAGCGCAGCGTGACTTGGTTCCTTGTTGCGCCGGGGCG
GACGACAAGTTTATTAGCGAATCCCAGGTGGAATCTTTCCTAGAAGGACAAAAATTACCAGGTGG
ATAGAAAGGACATAAATTGGAGCCTTGGCTTTGCAAAGCCAACAAAAATCTTCACTCCATCTTAA
ATTTAGCCTAAGAATAAGTACCCCTGTATCTCTAAGTGAACCTGAAAGTTCGTATATGGGGGCGC
GATCTTTATTCATGAATTTCCCCCGGGCTGGCTCGTCTGTTAGTGCTTTTTTTCTTGAGGCTTCG
CCCTGCTCTTCTTCGTTGTTTGCACTGCGAATTTATCATCGATTGTTCTGCTATTTTTTTTTTTT
TCGTTCCTTATTTTGACGTCCTCATATTTTAGTCGTGGAACGTTC
Right flanking sequence: Indices 9886 -- 10385
CAAATTGGCACTTGGGTGTCCTACTTAGCTTCTTTGGTATTAATTCAGTCCTGATCCCAATGCTG
TTGCTCCAAACCATACGTAAAATAGATCTTTTTCTTCATTCCCAAACTTGAGCCTAAGTACCGTA
CGTAAAATAGATCTTTTCCATTTTTTCTCGAACTTGAGCCTAAGTAAATTCGTTTGTCACCTATG
CTATAGCGTTAATAGCCTAAGCCAGTCTGTTGTTTGTGATCTATGCCATAGCATCATCAGTTGAA
CCGAGCCAGTTATAATTCGTTAAGACGAGCTTGAAGAAGAATGATAAAAAGCTCAGCTTTCTATG
GGCTGAGCAATCTACCCAGAATTGAATAAAGCCCGACGACGTTTGAGGCGAAAAGCCAACTTGTT
TGTGATATACACATAAGCTTATTCTAGCCATAGCTTATTCTAGCCATAGCTTTATTCAAGCCATG
GCTTAGACATAGCCTTTTCGAAATAGCCATAGCTTATTACTCTAG
Found at i:10022 original size:50 final size:51
Alignment explanation
Indices: 9964--10061 Score: 144
Period size: 51 Copynumber: 1.9 Consensus size: 51
9954 CTCCAAACCA
*
9964 TACGTAAAATAGATCTTTTTC-TTCATTCCCAAACTTGAGCCTAAGTACCG
1 TACGTAAAATAGATCTTTTCCATTCATTCCCAAACTTGAGCCTAAGTACCG
** * *
10014 TACGTAAAATAGATCTTTTCCATTTTTTCTCGAACTTGAGCCTAAGTA
1 TACGTAAAATAGATCTTTTCCATTCATTCCCAAACTTGAGCCTAAGTA
10062 AATTCGTTTG
Statistics
Matches: 42, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
50 20 0.48
51 22 0.52
ACGTcount: A:0.30, C:0.21, G:0.12, T:0.37
Consensus pattern (51 bp):
TACGTAAAATAGATCTTTTCCATTCATTCCCAAACTTGAGCCTAAGTACCG
Left flanking sequence: Indices 9464 -- 9963
TTTATTAGCGAATCCCAGGTGGAATCTTTCCTAGAAGGACAAAAATTACCAGGTGGATAGAAAGG
ACATAAATTGGAGCCTTGGCTTTGCAAAGCCAACAAAAATCTTCACTCCATCTTAAATTTAGCCT
AAGAATAAGTACCCCTGTATCTCTAAGTGAACCTGAAAGTTCGTATATGGGGGCGCGATCTTTAT
TCATGAATTTCCCCCGGGCTGGCTCGTCTGTTAGTGCTTTTTTTCTTGAGGCTTCGCCCTGCTCT
TCTTCGTTGTTTGCACTGCGAATTTATCATCGATTGTTCTGCTATTTTTTTTTTTTTCGTTCCTT
ATTTTGACGTCCTCATATTTTAGTCGTGGAACGTTCTTGCCTACCAGTAGATGATTGTCATTTGG
GAATTGCCTACCAGTAGATGATTGTCCTTTGGCAAATTGGCACTTGGGTGTCCTACTTAGCTTCT
TTGGTATTAATTCAGTCCTGATCCCAATGCTGTTGCTCCAAACCA
Right flanking sequence: Indices 10062 -- 10561
AATTCGTTTGTCACCTATGCTATAGCGTTAATAGCCTAAGCCAGTCTGTTGTTTGTGATCTATGC
CATAGCATCATCAGTTGAACCGAGCCAGTTATAATTCGTTAAGACGAGCTTGAAGAAGAATGATA
AAAAGCTCAGCTTTCTATGGGCTGAGCAATCTACCCAGAATTGAATAAAGCCCGACGACGTTTGA
GGCGAAAAGCCAACTTGTTTGTGATATACACATAAGCTTATTCTAGCCATAGCTTATTCTAGCCA
TAGCTTTATTCAAGCCATGGCTTAGACATAGCCTTTTCGAAATAGCCATAGCTTATTACTCTAGC
CATCGGAGGGAAAGCTTGAGAAATAGCTTTGAAGTAGTCCTTTCTTGGTTATAGTTTAAAAGTTT
TATTGTTTAGAAGTAGCTCTTTAAGCATGGATTTTATTTTGATGTTCTTTCGGCGGTCACCAGAA
CAATAATTTTTGCATTTTTGCTGACGAAGCCACATCTATAACAAG
Found at i:10312 original size:16 final size:16
Alignment explanation
Indices: 10291--10345 Score: 83
Period size: 16 Copynumber: 3.4 Consensus size: 16
10281 TATACACATA
10291 AGCTTATTCTAGCCAT
1 AGCTTATTCTAGCCAT
10307 AGCTTATTCTAGCCAT
1 AGCTTATTCTAGCCAT
*
10323 AGCTTTATTCAAGCCAT
1 AGC-TTATTCTAGCCAT
*
10340 GGCTTA
1 AGCTTA
10346 GACATAGCCT
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
16 22 0.61
17 14 0.39
ACGTcount: A:0.25, C:0.24, G:0.15, T:0.36
Consensus pattern (16 bp):
AGCTTATTCTAGCCAT
Left flanking sequence: Indices 9791 -- 10290
TTTGACGTCCTCATATTTTAGTCGTGGAACGTTCTTGCCTACCAGTAGATGATTGTCATTTGGGA
ATTGCCTACCAGTAGATGATTGTCCTTTGGCAAATTGGCACTTGGGTGTCCTACTTAGCTTCTTT
GGTATTAATTCAGTCCTGATCCCAATGCTGTTGCTCCAAACCATACGTAAAATAGATCTTTTTCT
TCATTCCCAAACTTGAGCCTAAGTACCGTACGTAAAATAGATCTTTTCCATTTTTTCTCGAACTT
GAGCCTAAGTAAATTCGTTTGTCACCTATGCTATAGCGTTAATAGCCTAAGCCAGTCTGTTGTTT
GTGATCTATGCCATAGCATCATCAGTTGAACCGAGCCAGTTATAATTCGTTAAGACGAGCTTGAA
GAAGAATGATAAAAAGCTCAGCTTTCTATGGGCTGAGCAATCTACCCAGAATTGAATAAAGCCCG
ACGACGTTTGAGGCGAAAAGCCAACTTGTTTGTGATATACACATA
Right flanking sequence: Indices 10346 -- 10845
GACATAGCCTTTTCGAAATAGCCATAGCTTATTACTCTAGCCATCGGAGGGAAAGCTTGAGAAAT
AGCTTTGAAGTAGTCCTTTCTTGGTTATAGTTTAAAAGTTTTATTGTTTAGAAGTAGCTCTTTAA
GCATGGATTTTATTTTGATGTTCTTTCGGCGGTCACCAGAACAATAATTTTTGCATTTTTGCTGA
CGAAGCCACATCTATAACAAGTAGCTCTAGAGAAAGTCATAGCAGCTTTAAAAGCTTCCTCCAAG
CCATAGCTTTAAACGTAGCTATAAAAGCCTCGGAAAAGCCATAGCTTGTTCAGGCCATAGCTTAT
ATTATTATAGTCATTGCTTTTGAAATAGCCTTTGCTTACGACATATCTGACATTTCCATTGCTAC
AGCTATTATAGTAGCTCTAGCTGTAGCAGTAGCCCCATCTGTAAGCTGTGGCTGTAGCTGTAGCT
GCAGCCCTTGCCTTAGCAGCAGTAGTTCTAGCTGCGGCGGCCCCT
Found at i:16702 original size:66 final size:62
Alignment explanation
Indices: 16639--16761 Score: 156
Period size: 62 Copynumber: 1.9 Consensus size: 62
16629 TCGAAGGAGA
* *
16639 AAGTATGAGAGTTACCCGGGAATTATTTTGACCCATTTAATTTTTCTTTCCAGCTCTCAAAGGAC
1 AAGTATGAGAGTTA-CCAGGAA--A-ATTGACCCATTTAATTTTTCTTTCCAGCTCTCAAAGGAC
16704 G
62 G
* * * *
16705 AATTTTTAGAGTTACCAGTAAAATTGACCCATTTAATTTTTCTTTCCAGCTCTCAAA
1 AAGTATGAGAGTTACCAGGAAAATTGACCCATTTAATTTTTCTTTCCAGCTCTCAAA
16762 AGGCAAAATT
Statistics
Matches: 51, Mismatches: 6, Indels: 4
0.84 0.10 0.07
Matches are distributed among these distances:
62 34 0.67
63 1 0.02
65 5 0.10
66 11 0.22
ACGTcount: A:0.29, C:0.20, G:0.14, T:0.37
Consensus pattern (62 bp):
AAGTATGAGAGTTACCAGGAAAATTGACCCATTTAATTTTTCTTTCCAGCTCTCAAAGGACG
Left flanking sequence: Indices 16139 -- 16638
GAATGCCATTATAATACTTTTACAAAGCCCAGGTCTAGGAAGAAGAAATACGCTTGCTCGACCGA
CCTCAATTAGCACTGCTCGACCTTAATTCCATTGGAAAATAAATAAAAAACCTTGCCCGTTTCTT
TTGTATTAGCAAGTTGTGAGAAGGGAGGAGAGAATAAGTGAGAGATGTTTTTTTCTGAAGTACCA
GCGAATACGAAAAGGCGGGTTTTTTCTTTAAAAAACCAATACGAATTAATAGAGCTTTTCCTAAA
CAGCAAATTTGAGGGCTTTTCCCAAGACTAGCAACAATCCCAGGAATACCAACAAATAAGGCGGG
GCTAAAATAGGCAGGGCTTTATCCTGGAATATTAAGATACGATTGATCGTATAATTGGTCAAAAA
CCCCCTCAAGGACGCAACGCGCTTGACTTCGAATATTTTGTATGTAAAGTGTTTTCCCGATTCTT
TTAACCCATTGCATTTTTATTTTCCGGATGAGTTTTCGAAGGAGA
Right flanking sequence: Indices 16762 -- 17261
AGGCAAAATTTTAGAGTTTGCCCTTTGACACTCCCCCTTCTACTTCGTAAAGGAGTTTGGAAAAA
AAGAAACAAAAGGAATATTTAAACCTTTAGCAAATTTACCTCGACAACAGGCTTTAAAATGGTAA
ATAATTTTGGAATCCCGGTAATTCTTGATATCTAGCTGCTTTTAAATTGAATATTTCGAGCATCA
GAACGTTTAACTAGTGCTATACCGCGGAACCGAAAAATCTTACCCCGTCCTCCTGGTCCAAGATC
ACGCTTACTTTTGTGGGTTTATCTCTGGAATCCACTAAGCCCCTTTGATGTAGTTTGTCCATAAT
CCTGTTTTTATGTGGGCCTGCGGGAAGATAGGATCTACCCAGCAGTGCGTTTTGATATAACCTAC
TTCCCGTGGGTAGCGGACTATTTTAATTCTTCAAGGCATAAAGACCATAGACATTTCCTTCTGGC
CTGCGCCTTCGCGCTCAATCCTTCACTGAGCTGACGAAACGGATC
Found at i:19152 original size:28 final size:28
Alignment explanation
Indices: 19111--19187 Score: 136
Period size: 28 Copynumber: 2.8 Consensus size: 28
19101 GCATCTAGGA
19111 ACATAGTAATGGCATGGCTAATGTAATT
1 ACATAGTAATGGCATGGCTAATGTAATT
* *
19139 ACATTGTAAAGGCATGGCTAATGTAATT
1 ACATAGTAATGGCATGGCTAATGTAATT
19167 ACATAGTAATGGCATGGCTAA
1 ACATAGTAATGGCATGGCTAA
19188 ATTGCGGTGT
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 45 1.00
ACGTcount: A:0.36, C:0.12, G:0.22, T:0.30
Consensus pattern (28 bp):
ACATAGTAATGGCATGGCTAATGTAATT
Left flanking sequence: Indices 18611 -- 19110
TTTTCGAAAGAGTTTGATGATTTTGTTTATTTTTGGGGTATCCCTTAGATTAGACCATATTCGAA
CCTCCTTTCGTTTTTTTTTTTTCGCGTCTTGCTTTCCCATCTTCGTCCTTTATAAGGTGAGCGGG
ATAGAGTAATGGTTAACTTGTCAGGCTCATGATCTGAAGATTGCAGGTTCGACCCCTGCTCCCGC
CAGAATAGGATTAATGTCGACCGGCCCGCTACGTGTAACGGCTAGCCACTTCAAATGGTTACTTG
TTACGGAGAAATCCGCCGCATTTAGAAAAGAAGTATCGGAGATCTCCTCTCAGCTTTCTTTTGTT
CTCTTACACATTTTCAGAATGGGGGCTAACCTCCATCTCTGGAGATTTTTCTTAAACGGCAAAGG
AAAAGGTGCCGGGGCCTTTTCCAGCCACGGTAAATTATTCACGGTCACCTCCCGCGCCTCATAAT
CTGAGTGTTGTAGGTTCGAGCCCTACTCCAACAAGGCATCTAGGA
Right flanking sequence: Indices 19188 -- 19687
ATTGCGGTGTGGACGAGGAATAACCTAGAGAGGGCCCTTACTCTGGCCGCCTTTGCGAACATATG
CTGAAACACTATTTATTTCCCGGTTCTTAGCCTTTTTTCTTCTTTATGTTGATTGATCACATCCG
CCAGCATTAATAGAATAATATTCTTGGGGGATAAATAAGCCAAGGTGTAGCGCAATTTGGTAGCG
CATCTGCTTTGGGCGCAGAGGGTTATAGGTTCAAATCCTGTCACCTTGAGTAAAAGAAGTCAACT
AGAAACATGAAAATCAATCGACCCTTACCTAATCCCCCCCACCATTTCTTTATAAGCCACAGCTT
ACTCCGACCCTTCTTATTCCCCAAAGAATATCCGGCGGGGCGGCTTTCTTAGCCACTATGGTTTT
GTTTAGTATTCCTTTCCTTTTCTGATAGTCTTAGCCTTACCTATCATTATTTGTCTTTTTTTTCT
TTTCTTATTTTCCATTTTTATTGGTTTATTCTTCTAGTAATTTTT
Found at i:28144 original size:12 final size:12
Alignment explanation
Indices: 28127--28163 Score: 74
Period size: 12 Copynumber: 3.1 Consensus size: 12
28117 AATTTTAGAT
28127 TTCAAAAGAATA
1 TTCAAAAGAATA
28139 TTCAAAAGAATA
1 TTCAAAAGAATA
28151 TTCAAAAGAATA
1 TTCAAAAGAATA
28163 T
1 T
28164 GGATTCTGTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.57, C:0.08, G:0.08, T:0.27
Consensus pattern (12 bp):
TTCAAAAGAATA
Left flanking sequence: Indices 27627 -- 28126
AGAAGTAGGCTCGGCGTCGTATGTGCACATAGCTAGCGGATCGGTAATCTTTCTTGGGATGGAAT
TAGCCCTCCCGGCCAGCAGATGGCCCAGACGCTTCTCCAAGGAAATAGAAAAGCGCCGCCGAAGC
AAGACCCGCATTAATAAATGGGCGGAGATACGGAAAGAGAGTTGGGACCATCAATTGAAGGACCT
AACCCTTCGTGCATGGACATGGGCTCTGAGGAAGACTAGACATAACCTTTCGTCTTGGGGAGCTG
CGGAACATGCCATGTCTACAAAAGCACGAAGGGTTGCTAGGGATTTCCTCCTCGAAAAGATCGAC
AGAGGTGAAACCAGACAATCGGTCCAGCACCTCCTGTCCAGGGAAAAAGATGTGTTTCTGAACAT
ATCTTGTACGGGAATTCCAGAAGAGATCCTGCAGGCCCATACACATCTTACAAGGCTTTTAGAAA
AGTACTTGGACGATGAGTTTCTTCGAACCTGGCGTAATTTTAGAT
Right flanking sequence: Indices 28164 -- 28663
GGATTCTGTCTTTGGTGTTCGTAAATCTCTCGCGACAAATACGGGGAGAAGAGTGTCACCTATGC
GTATCTTGGCTCCGATGGAGGTGATCACGGAGAAACTACGGAATAAAGGAATACTCCAGCCTACA
CAAGCTCGTCCCACCACACTAACTTCGATGCTCAATTACTCGGACGAAGCTATTGTGTCCTACTT
CTCAGCCCTAGCCCATGGACTTCTCAGCTACTACCGTTGTTGTGACAACTTTCATCTGGTTCGAC
GCCTGGTGGACTACCAGGTAAGATGGTCAGCCTTATTCACACTGGCGAGTAAGCACCGATGTAGC
ACCAAAAAGGTGATTGTCAAATACACAAGGGGGCCGCAGGCCCTGAGCAGAGAGGGCGAGGTAAT
CGCCAAGTTTCCAGGTTCCCCAACAATAGCTCGCATGGGAAAAAGGTTCCTTACCGACATCCGAC
AAGATGCTGTCGATGATGTCCTACCAAAAAGACTTGAGTCTCTCG
Found at i:32477 original size:24 final size:24
Alignment explanation
Indices: 32445--32494 Score: 91
Period size: 24 Copynumber: 2.1 Consensus size: 24
32435 GGTCGTATTC
32445 TAATATATCTTATTCCTCATGATA
1 TAATATATCTTATTCCTCATGATA
*
32469 TAATATATCTTATTCTTCATGATA
1 TAATATATCTTATTCCTCATGATA
32493 TA
1 TA
32495 CCTTGGGATA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.34, C:0.14, G:0.04, T:0.48
Consensus pattern (24 bp):
TAATATATCTTATTCCTCATGATA
Left flanking sequence: Indices 31945 -- 32444
GCGCTTCGCGCATCAGTGTCCTGCGTTTTTTGGCGAAGGAACGGCTAGTAACGCCGCCCCGGCGT
CCAATACTGTTTCCGTGGAACAATCACCTAAGCAAAGCCTTGTAAGTAGGAGGTGGTGGTCAAGA
TGAATTTATGGTTCCAGTCTACTCGGGTAGACTCCATTCATTAATTCCAGAGAATTGTGTTATGC
GCAGTGGATTAAGTGCTATCCGCCAAAGCCGCCCCATGTGGTGGGTAGAGGTAGAAACAAGTTGG
CACCGCACGTCGTCACCGGAGCACGGCCAGTGGCGCTGGTGTAGAATCGACTAGTGAAGTGCCTT
CCAGCCACGTACCCGTTCCTTATGAGAGTTGGCGAGTTGGAGCCGTCTAAATTGGTTCTTGTGGC
GCTGGATCTCCCAAAGGGACCTGGGTATTTGTTTGATCCGCCGCTTTATCTAATTTATAGGTAAG
TAGGTGCGTCGTTGGACGATCAGCCTCCTCCTCCCGGTCGTATTC
Right flanking sequence: Indices 32495 -- 32994
CCTTGGGATACTTTATCGAAATCCTATTCTGAGTTTTTATTAGGCAAATATTTGAAGATGTGACA
GATAAATAAATCCTTTCGGGTTCTGATGCAATAGTTCCCTAGAGGTTAATTTCCTCGATGCCGAA
CGCTGGCGCCAATACTTTTTCAGCCTAAGTAGGCTTTGTAAGCTTTTGTATGGTCTTCTCTCAAA
TAACCCGCTCTAAAGTACAAGTATGAATACAAAAAAGACGAACAGGATAAAGGCCGCGACGAGGC
CGATCCATCTCCATGATGACCCCTCTGACTATGACACAGCTACGGCGGCGGCGTGTACATTCCCC
CTGGGAACTAACTCGCGGACGAGCCGTGGTGGAGAGCTTTACTCGAGTCGCTTCTTGACGACAAT
TCGCGGTGGAGGGCTGTATTCACCCCTGAATGCATGAACTATGAGGTGGTGTTTTTGGTGTACTG
TAAAATATTCGTTTTATTGATATTTATTTGTCTCTTTACATCTTT
Found at i:43563 original size:31 final size:31
Alignment explanation
Indices: 43527--43586 Score: 102
Period size: 31 Copynumber: 1.9 Consensus size: 31
43517 CTTTTGAGGT
*
43527 TAACCTTCATCAACCTTCCTTCCCCCTTCAA
1 TAACCTTCAACAACCTTCCTTCCCCCTTCAA
*
43558 TAACCTTCAACAGCCTTCCTTCCCCCTTC
1 TAACCTTCAACAACCTTCCTTCCCCCTTC
43587 GGGGCACTTC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.20, C:0.47, G:0.02, T:0.32
Consensus pattern (31 bp):
TAACCTTCAACAACCTTCCTTCCCCCTTCAA
Left flanking sequence: Indices 43027 -- 43526
TTCGGGGCAGTACTGCGGTTTCGTCTACTGAGCAGAAGGCCTATTCTGTTAACCCCCATCTCTGA
CCTTTTTTTTTCACAAAATATTTTTGAATATTTCAAAAAGGCGTCCTTACTTGTTGCTTGCAGCG
AAGCGGTCCTTGAATGAAAAGGTGAAGGGGGTGGACGACCGCAGAAGAACTGAATATAAGCAATT
GCAACTGCCAAAAGCTATAGCGGGAAGCGCGGAAATAAGACAACAGCCGCCGCAAGATTATGCCA
GCCAGCCAGGCCAGGGCGAGGGCCACACGTAAACGGAGGATAAGGTTATAACTTCGTTCCTCTTC
CCTCTCCACGAAACGCCGCGTAGCTAGTCCTCCGATAACCTTTGGTCGAGTGCTTCTTTCAAGCC
CTTCGGTCGAGTGCCCCGACCGACGAAGGGGGACCCGAATCGAAGGGGACCGGGGAGGACGACCC
CCCTTCGAGAACTTTCATCAACCTTCCCACGGCCCCTTTTGAGGT
Right flanking sequence: Indices 43587 -- 44086
GGGGCACTTCGAAGGAGGGAGGAGGAATCTTAAAACCTCGACCTGGAAAAGTCGAGGTTTCAAAA
CCTCGGCGAGGGAGGAGAGCGCGCTCTTCCTCGATAAAGGAAGAGCGCGCGTAAACTCAATTTCC
TCCCGAATCTTAGAGAGGTAATGCAAACCATTTCCGCGTGCGTGTATCAATTTTATTACCCTGCA
AAACGATAATATTATCCCACCCAAACACGATCTAACCATTCCTCGACATTGTCGCATCTTTGATT
TATATCCCGAGACACTGCACATAAGATTCATTCAGTGAGGAAATTGTTGATTGGTAGCAACTTGT
TTTCTTAAATTCAGCAGAAGGGTCTGAAGTTATTATTCCATTTCGAATTTGCTTCCGTAGTAATG
CGAATTTACCTGGAATGTGCAATTGCTCATTGTCAGTTTATTGGAAACAACGGCGGTTAATTTAC
TTTTGGCTACAGATAAAATCTTGTTGGAATGGCAACTCATCATCA
Found at i:63443 original size:27 final size:27
Alignment explanation
Indices: 63412--63466 Score: 101
Period size: 27 Copynumber: 2.0 Consensus size: 27
63402 GCGGATACTT
63412 ACATAGATACCCAAGAATAGGCATATA
1 ACATAGATACCCAAGAATAGGCATATA
*
63439 ACATAGATACCCTAGAATAGGCATATA
1 ACATAGATACCCAAGAATAGGCATATA
63466 A
1 A
63467 GAACCAAATA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.47, C:0.18, G:0.15, T:0.20
Consensus pattern (27 bp):
ACATAGATACCCAAGAATAGGCATATA
Left flanking sequence: Indices 62912 -- 63411
GATGGAATTCTGAAACGAACAAAATACTTACTTATATTCGCCATTTTGTCCTTGATTGTCTTAAT
TTATATGTTAATAATTGGCTAAAGTTCACCATTGCTCTAAATAGAAAAATAAGCCTCAAAATCAT
TTATTTCTTTGCAATGACCGACCTAGGTTTAACATATTATATACACTCATTGTTTCTAACTTCTC
TGAACGAAAGCATGTTATGGAATTAGACTACCTAATAATGGTCGTTTGGTTGGTTTGCACACTTT
CTTTCGACTGGTACATCTTAGGTATAACTATTGCATACACTTCACCACCCAGGTTTTAGTTCATT
AAAACAGGGGTACAATACTTTGTACAATGGAAATATATAACTGATCATATGGGAAATCATCCCGG
TGCTACAGCAGCTAAACGTATATTAATCCCGACTGTAGGTGCTATTTCGGCCGATAGAAGTTTAG
ATTATTGGGAACAATCTGACTTTTTTGGAAGAAATGCGGATACTT
Right flanking sequence: Indices 63467 -- 63966
GAACCAAATACCAAAGTTATTGTGGATATTTATGAAAGACAGGGTGGTCTTTCGGATGGACTTGG
GAATATGTATAGGATACTTGTTGACAACAGTAATAGAAATGAAAATAATATTTCTTGGTCAATTT
AACTTTATTAGCGTTGCGCTTTCATCTGAGTAATGGAGTTCGTCATTATTGGTGGGATTTGGGTT
CTTTTCTAGAATCATCCAAAGTGTATACTTCTGTAATTATTATGTCATTCCGTGCAGCTTCTTTT
TTTTTTTGAGCTTTATTAATATTATGCAATTAGTAAAGAAGAGACCAAAGTAGGTAGAGTTAGTG
AGCCATGTAATGGTCAACTATTTTCGCAGGACACCTACGCAAACCTTCAATTGCTGCATAAACAC
TGTCACATGGCCAATACTTGCAAAGATACAAACATTATGAGAAGAGCCGTATGACGGGCGACTGT
TATGTACGGTGCTGTGGAGCCAGACAGCCGGAAATAGAAACGCGC
Found at i:73385 original size:22 final size:24
Alignment explanation
Indices: 73360--73405 Score: 69
Period size: 22 Copynumber: 2.0 Consensus size: 24
73350 CCGAATGATA
73360 GCTCCTTAAGTTC-C-TTCGCTGG
1 GCTCCTTAAGTTCGCTTTCGCTGG
*
73382 GCTCCTTAGGTTCGCTTTCGCTGG
1 GCTCCTTAAGTTCGCTTTCGCTGG
73406 ACTAAGTAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 12 0.57
23 1 0.05
24 8 0.38
ACGTcount: A:0.07, C:0.30, G:0.26, T:0.37
Consensus pattern (24 bp):
GCTCCTTAAGTTCGCTTTCGCTGG
Left flanking sequence: Indices 72860 -- 73359
TTGCTGAAAGTAAGAGTACTCACTTCGTGATCTATGGTCTCACTGCATTGTCCACTGTGTGTTGC
ACATGGTGGTGCACATTGTTCTTGGGCTTGATACGAAGAGTAGTCGAAAGAGTCAGAAATAAAAA
ATCGGTTCCAAAGCCAAAGTAAAACACCAAAGATATAGGTAGAGAAAAAGTGTGTACATTCGGTA
CAAGAGCAATATTGGTACTTTATTCTGTTGAGGGGGGAAGGGTAAAAAGAATTACTTTCGAAGGT
CAAAATCATACTTATAGGCGGCTTGGTCTTACTATTTCATTTTAGTGAATACTAGTACCTTCAAA
GGCAGGGCCTTGTTGAAGAGAAAGCCCATTGCTGCTATTCTTAGAGTGTCCACAATATTTATTAT
TTAGCCTAATTTTTTTATTGAAATAATGCCATTTGCGTAGCTCTCATAATTATAATTAGTGGAAG
GTGCTGTGCTACAAGTAGGATGTGGTTTTTTTTTCCCGAATGATA
Right flanking sequence: Indices 73406 -- 73905
ACTAAGTAATTGCCCTACCTCCTCGTGGCCTAGTTGTCCTAACACAAAATCCACTAGCAAAATTT
AGCAGCATTATGAATTTGCATCCGATGATGAAAGAGATGCTAGTTACTTCTTTGGCTGCGCTCAA
TGAGGAGGAGCACAGCCCTCGGAAGGTTAGACAGATCTATGCGCCATATAAGCGCGCGCGTTAGG
GGGGGGGAGTGAGTGCCCATACAAAGACCTCCCATAGGCAATTCGTTGAATAAATAAATCGCCGT
AACAAGAGAAAAAGGGTGGAAGATCGAACAAGTTTTTGCGGATGGCAAATTATTCGGAAAAACCC
GGGTATTTTCTATCCAAAAAAGATGATTACTTTGTTCTCATCAATTATATAAAATCATATCTGAA
AAAGATGATCGCTAACGTTTTAAAGATTGTACCAAATCCCGAAAGAAAAACAGTTTATCTCTTGT
TTTAGACAAAGCGTATTGGGCAGGAATCCCTGGGAGAAGAGATCT
Found at i:82727 original size:30 final size:30
Alignment explanation
Indices: 82691--82750 Score: 111
Period size: 30 Copynumber: 2.0 Consensus size: 30
82681 CCGTGTCGGT
*
82691 CCCGTACTTCCCAGCGGCGGCGAGGCCGGA
1 CCCGTACTCCCCAGCGGCGGCGAGGCCGGA
82721 CCCGTACTCCCCAGCGGCGGCGAGGCCGGA
1 CCCGTACTCCCCAGCGGCGGCGAGGCCGGA
82751 GGCACCATTA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.13, C:0.42, G:0.37, T:0.08
Consensus pattern (30 bp):
CCCGTACTCCCCAGCGGCGGCGAGGCCGGA
Left flanking sequence: Indices 82191 -- 82690
GGCTCGTCGTGCCCCTGCCACTATATTCTGCTTGGGACAGGAGGGCCTATCTGCGTCAGGAAATG
CGTAGTATTACGTGCGTTATCCTAACCGTACCTTCTGCTCCCTCGAGGCTAGTGGGGGCATTCTG
CCTCGATTTACACCTGCTGCTGCCGGGGGTGCACCCTGGTTGAGCGCGTGACCTAGCCTGAGATG
TCACTTACACTCCTCGTCGGAGTAAGTGTCTTCGGGCGCACCATGGTATATAATAAAATCATTTC
CAAGCCTGAACTAGGAAGTGTTCCACCTCCCGGCAAGGAGTGCGTGTACATAACGCCACCCATGG
TGCTTGCCAAAGCTCCCAGTGAAGCAAAGTTCCCAGTTATAATCCCAACGACTCTAAGAGGATTT
TCCATAAATACCGCGAAAATGTCAGGAGAATCTCTCTATTCTCCCTCGGCTCTTCTGAGCCCGAT
ACCTCTTCTTGGAGGACAAACTTGGGAATATGGGGCCGTGTCGGT
Right flanking sequence: Indices 82751 -- 83250
GGCACCATTATTGCTGCTTAAATTCGGTGCAACGCCGAGGCTCCTAGAGAAACAGAGTTCACCCT
ATTCTCACTTTAGACATTTCAGCCGTGAACAATTCAAAATATTGCTCGTTTTTCTCTGAGAGCTT
AATTAGTGATTGGAGATGGGTTTTAAGAAGAGTTTATTCGTCCCAAAGATCCAACGGGTTTCCAT
TCAGTTTTGCGGCTGCTTCTTCACAAAGTTCTAATGTGTTACTAAACACTGCATCGTGCTTTTTG
ATATCATTGGTAAGTGAAGTGGCTTTCTGCTCTGGATCAGAAAGGTTCTTTGAGAAGGGATGTGT
GGTTGAAGAGTAGGAAAACTCACCTTCCTTAATTCCGCGGCCGCGAAATTATAGAGGTTGGAGTA
GGTTGGAAAAGCACGATTCGAGGTAATCGATAAACTGGTTTTTCCACTCGATCGCACTATTTGAT
TTGCCCAAAGTTATGGCGTATTCGCAAGAGTCTCCAAGTGGGCAG
Found at i:89228 original size:18 final size:18
Alignment explanation
Indices: 89205--89239 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
89195 TGTAAAACAA
89205 AAAAAAAGGAGCAGCTTG
1 AAAAAAAGGAGCAGCTTG
89223 AAAAAAAGGAGCAGCTT
1 AAAAAAAGGAGCAGCTT
89240 TTAGATTGTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.51, C:0.11, G:0.26, T:0.11
Consensus pattern (18 bp):
AAAAAAAGGAGCAGCTTG
Left flanking sequence: Indices 88705 -- 89204
AAGGATTCAATCCAGCCGCAGGTTCCCCTACGGCTACCTTGTTACGACTTCACCTCAGTCAATGA
CCCCACCGTGGTATCCGCGAAGACCACCAATTACGGTGAGTGGGCCACACTCAACGGCGGCGTGG
AACACTAAAGTAATGGGTGATTTTCGGTCTGATGCTTCGGGCGAAACCAATTCCCATGGTGTGAC
GGGCGGTGTGTACAGGGCCCGAGTACGTATTCACCGCGGCATGCTGATCCGCGATTACTAGCGAT
TCCAACTTCATGTTCTCGAGTTGCAGAGAACAATCCGAACTAAGGCAATCTTTCTGGATTCGCTC
CGCCTTGCAGCCTTGCTTCCTATTGTAATTGCCATTGTAGCACGTGTGTAGCCCAGCCCATAAGG
GCCATGCGGACTTGACGTCATCCCCACCTTCCTCCAGTATATCACAGGCAGTCTTTTGTGAGTGC
AGACTTTTCTAATAGACTACCAAGATAGCCACAAGTGTAAAACAA
Right flanking sequence: Indices 89240 -- 89739
TTAGATTGTTATTTTGGAGTACCAACCTCCCGAGCAACTCTTAGGGTGGCGGCCCTAACAAATCA
TGAGGGTGGAACGAGGGTGACGGCCCTCATATCATGAATTATTAGGGGGGCGGCCCTAGAAAAAA
AAACTTTGGCAGCAGAGCTGACGAGGCCCTTACAAAAGTTTCCCGGTAGGTAGTATCCAAAAAGT
GGCTATCTCAGCCGTCTGAAATACTAATTCTTAGCAACACAAAACGAGGGTTGCGCTCGTTACAG
GACTTAACCAAACATCTCACGACACGAGCTGACGACAGCCATGCAGCACCTGTATAAATTTTCGT
ACCATCCCGTTAAGGACAAGCACACTGGTTCATATGTCAAGGGCTGGTAAGGTTTTGCGCGTTGT
ATCGAATTAAACCACATGCTCCACCGCTTGTGCAGGCCCCCGTCAATTCCTTTGAGTTTCAGTCT
TGCGACCGTACTCCCCAGGCGGAGTGTTTAACGCGTTAGCTGGGC
Found at i:91099 original size:114 final size:116
Alignment explanation
Indices: 90951--91174 Score: 335
Period size: 116 Copynumber: 1.9 Consensus size: 116
90941 GCTTTGGCAT
** * *
90951 AAGCAATTCCGCCAATCTCAAAGATATTTGTTATGTTC-ATAA-TGAGTACTCTTTGTTCACGAA
1 AAGCAATTCCGCCAATCTCAAAGATATTTGTTATGAACAACAATTGAGTACTCTTTATTCACGAA
* ** *
91014 CCGTAATAGAGTTCATTCCTGTACATTGCTTATATATGAGGCTTTTTAGCC
66 CCGTAACAGAGTGAATTCATGTACATTGCTTATATATGAGGCTTTTTAGCC
*
91065 AAGCAATTTCGCCAATCTCAAAGATATTTGTTATGAACAACAATTGAGTACTCTTTATTCACGAA
1 AAGCAATTCCGCCAATCTCAAAGATATTTGTTATGAACAACAATTGAGTACTCTTTATTCACGAA
* *
91130 CTGTAACAGAGTGAATTCATGTACATTGCTTATATATGATGCTTT
66 CCGTAACAGAGTGAATTCATGTACATTGCTTATATATGAGGCTTT
91175 GGCATAAGCA
Statistics
Matches: 97, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
114 35 0.36
115 3 0.03
116 59 0.61
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36
Consensus pattern (116 bp):
AAGCAATTCCGCCAATCTCAAAGATATTTGTTATGAACAACAATTGAGTACTCTTTATTCACGAA
CCGTAACAGAGTGAATTCATGTACATTGCTTATATATGAGGCTTTTTAGCC
Left flanking sequence: Indices 90451 -- 90950
CCCGTTCGCCACTTCGTTTTCAACTGTTCCCCTCGTCAGGCGCTTCAATGCTCCATTTGACAAAT
AGAGGCCGCATCCACTGGCGTAGCCAGTGGAGCAGCTAAGAGAGGAATAAAACAATCTTTATTCT
CTCCCGAATGCCCGTAGCGCCGTTCGATAACCTTTTATTGCCCCGAACGCCCTACGCGGCGTTCG
ACAACCTTCAACACGTAAGGACGAAAACAACGTTCGACTTGCATGTGTTAAGCATATAGCTAGCG
TTCATTCTGAGCCAGGATCAAACTCTTTTTTTTTAGTATTGACATCCTCAAAAACCACCATCATT
ACCTCTTCCTCCTCCACCTTTTCCTTATCTTCCTCAGATTTGTCATCAAAAGAGGAATCTTCCGG
AAGAGGAAGATGACAAATCTTGCCTCTTTTCTGGAAGAACAAATGAGTACTCTGGTTCACGAACT
GTAATAGAGTGAAAAAGAGTATATTGCTTATATATGCTTTGGCAT
Right flanking sequence: Indices 91175 -- 91674
GGCATAAGCAATTCCGCCGATCCAAGAGATTATATATGATTTCTGATAAGCAATTTTGCCAATCT
CAAAGATATTTGTTATGTTCATAATGAGTACATAAATTCACGAACCGTAATAGAGTTCATTCCTG
TACATTGCTTGTAATATAGGTGCGAAAGCAAGCAATTCCGCCAATCCAAAAGATTCTATATGATG
CTTTGGCATAAGCAATTCCCAGATCTCAAAGATATTTGTTATGTTCATAATGAGTACTCTTTATT
TGTAATAGAGTTCATTTCTGTACATTGCTTGTAATATAGGTGCGAAAGCAAGCAATTTCGCCAAT
CCAAAAGAGGTGCGAAAGCAAGCAATTTCGCCAATCCAACCCAAGATCAAGTGCTTTGTCCGGGC
TTGAACCATGTCTCCCGAAATCTTTCAGTACATATGGCGTAAGACGATTTCACATATCGAGGTCG
GAATGGGATCGGGTGTTTTCATGTCTTACCATAGCGCCCAGAAAA
Found at i:91322 original size:157 final size:154
Alignment explanation
Indices: 91065--91427 Score: 396
Period size: 154 Copynumber: 2.3 Consensus size: 154
91055 CTTTTTAGCC
* ** * * **
91065 AAGCAATTTCGCCAATCTCAAAGATATTTGTTATGAACAACAATTGAGTACTCTTTATTCACGAA
1 AAGCAATTTTGCCAATCTCAAAGATATTTGTTATGTTC-ATAA-TGAGTACTATAAATTCACGAA
* **** *
91130 CTGTAACAGAGTGAATTCATGTACATTGCTTATATATGATGCTTTGGCATAAGCAATTCCGCCGA
64 CCGTAACAGAGTGAATTCATGTACATTGCTTATATA-GATGCGAAAGC--AAGCAATTCCGCCAA
*
91195 TCCAAGAGATTATATATGAT-TTCT-G-AT
126 TCCAAAAGATTATATATGATCTT-TGGCAT
91222 AAGCAATTTTGCCAATCTCAAAGATATTTGTTATGTTCATAATGAGTAC-ATAAATTCACGAACC
1 AAGCAATTTTGCCAATCTCAAAGATATTTGTTATGTTCATAATGAGTACTATAAATTCACGAACC
* ** * *
91286 GTAATAGAGTTCATTCCTGTACATTGCTTGTAATATAGGTGCGAAAGCAAGCAATTCCGCCAATC
66 GTAACAGAGTGAATTCATGTACATTGC-T-T-ATATAGATGCGAAAGCAAGCAATTCCGCCAATC
*
91351 CAAAAGATTCTATATGATGCTTTGGCAT
128 CAAAAGATTATATATGAT-CTTTGGCAT
*
91379 AAGCAA--TTCCCAGATCTCAAAGATATTTGTTATGTTCATAATGAGTACT
1 AAGCAATTTTGCCA-ATCTCAAAGATATTTGTTATGTTCATAATGAGTACT
91428 CTTTATTTGT
Statistics
Matches: 176, Mismatches: 21, Indels: 18
0.82 0.10 0.08
Matches are distributed among these distances:
154 66 0.38
155 14 0.08
156 48 0.27
157 48 0.27
ACGTcount: A:0.34, C:0.17, G:0.16, T:0.33
Consensus pattern (154 bp):
AAGCAATTTTGCCAATCTCAAAGATATTTGTTATGTTCATAATGAGTACTATAAATTCACGAACC
GTAACAGAGTGAATTCATGTACATTGCTTATATAGATGCGAAAGCAAGCAATTCCGCCAATCCAA
AAGATTATATATGATCTTTGGCAT
Left flanking sequence: Indices 90565 -- 91064
AAACAATCTTTATTCTCTCCCGAATGCCCGTAGCGCCGTTCGATAACCTTTTATTGCCCCGAACG
CCCTACGCGGCGTTCGACAACCTTCAACACGTAAGGACGAAAACAACGTTCGACTTGCATGTGTT
AAGCATATAGCTAGCGTTCATTCTGAGCCAGGATCAAACTCTTTTTTTTTAGTATTGACATCCTC
AAAAACCACCATCATTACCTCTTCCTCCTCCACCTTTTCCTTATCTTCCTCAGATTTGTCATCAA
AAGAGGAATCTTCCGGAAGAGGAAGATGACAAATCTTGCCTCTTTTCTGGAAGAACAAATGAGTA
CTCTGGTTCACGAACTGTAATAGAGTGAAAAAGAGTATATTGCTTATATATGCTTTGGCATAAGC
AATTCCGCCAATCTCAAAGATATTTGTTATGTTCATAATGAGTACTCTTTGTTCACGAACCGTAA
TAGAGTTCATTCCTGTACATTGCTTATATATGAGGCTTTTTAGCC
Right flanking sequence: Indices 91428 -- 91927
CTTTATTTGTAATAGAGTTCATTTCTGTACATTGCTTGTAATATAGGTGCGAAAGCAAGCAATTT
CGCCAATCCAAAAGAGGTGCGAAAGCAAGCAATTTCGCCAATCCAACCCAAGATCAAGTGCTTTG
TCCGGGCTTGAACCATGTCTCCCGAAATCTTTCAGTACATATGGCGTAAGACGATTTCACATATC
GAGGTCGGAATGGGATCGGGTGTTTTCATGTCTTACCATAGCGCCCAGAAAAAACAATATTAATT
AATGAACAAATCTTAATGAACAAATAGTGAAGGCCATGCACCGCTCCGACCTTTTCGGAGCATGA
GATTTGTTTTTTCAAAAGAGAGAAAAAGATTAAATTCTTGATGAAAGAGGCTACCCTATCCAGAC
AGAGTCTGAAGGCACTCTTCGGAACTAGTGTGGGATCAGGAACAAGATTATAACAAGATTCTTTA
CGCCGCCCGGCAGAGCAGGACGATTCTTTAGGTCAGGCAGAGCAG
Found at i:91352 original size:154 final size:153
Alignment explanation
Indices: 91065--91507 Score: 465
Period size: 150 Copynumber: 2.9 Consensus size: 153
91055 CTTTTTAGCC
* ** *
91065 AAGCAATTTCGCCAATCTCAAAGATATTTGTTATGAACAACAATTGAGTACTCTTTATTCACGAA
1 AAGCAATTTTGCCAATCTCAAAGATATTTGTTATGTTC-ATAA-TGAGTA--C--TATTCACGAA
* ** * * * ****
91130 CTGTAACAGAGTGAATTCATGTACATTGCTTAT-ATAT-GATGCTTTGGCATAAGCAATTCCGCC
60 CTGTAATAGAGTTCATTCCTGTACATTGCTTGTAATATAGGTGCGAAAGC--AAGCAATTCCGCC
* *
91193 GATCCAAGAGATTATATATGAT-TTCT-G-AT
123 AATCCAAAAGATTATATATGATCTT-TGGCAT
*
91222 AAGCAATTTTGCCAATCTCAAAGATATTTGTTATGTTCATAATGAGTACATAAATTCACGAACCG
1 AAGCAATTTTGCCAATCTCAAAGATATTTGTTATGTTCATAATGAGTAC-T--ATTCACGAACTG
91287 TAATAGAGTTCATTCCTGTACATTGCTTGTAATATAGGTGCGAAAGCAAGCAATTCCGCCAATCC
63 TAATAGAGTTCATTCCTGTACATTGCTTGTAATATAGGTGCGAAAGCAAGCAATTCCGCCAATCC
*
91352 AAAAGATTCTATATGATGCTTTGGCAT
128 AAAAGATTATATATGAT-CTTTGGCAT
* * * **
91379 AAGCAA--TTCCCAGATCTCAAAGATATTTGTTATGTTCATAATGAGTACTCTT---TATTTGTA
1 AAGCAATTTTGCCA-ATCTCAAAGATATTTGTTATGTTCATAATGAGTACTATTCACGAACTGTA
* *
91439 ATAGAGTTCATTTCTGTACATTGCTTGTAATATAGGTGCGAAAGCAAGCAATTTCGCCAATCCAA
65 ATAGAGTTCATTCCTGTACATTGCTTGTAATATAGGTGCGAAAGCAAGCAATTCCGCCAATCCAA
91504 AAGA
130 AAGA
91508 GGTGCGAAAG
Statistics
Matches: 250, Mismatches: 27, Indels: 25
0.83 0.09 0.08
Matches are distributed among these distances:
150 71 0.28
152 1 0.00
153 3 0.01
154 68 0.27
155 17 0.07
156 47 0.19
157 43 0.17
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Consensus pattern (153 bp):
AAGCAATTTTGCCAATCTCAAAGATATTTGTTATGTTCATAATGAGTACTATTCACGAACTGTAA
TAGAGTTCATTCCTGTACATTGCTTGTAATATAGGTGCGAAAGCAAGCAATTCCGCCAATCCAAA
AGATTATATATGATCTTTGGCAT
Left flanking sequence: Indices 90565 -- 91064
AAACAATCTTTATTCTCTCCCGAATGCCCGTAGCGCCGTTCGATAACCTTTTATTGCCCCGAACG
CCCTACGCGGCGTTCGACAACCTTCAACACGTAAGGACGAAAACAACGTTCGACTTGCATGTGTT
AAGCATATAGCTAGCGTTCATTCTGAGCCAGGATCAAACTCTTTTTTTTTAGTATTGACATCCTC
AAAAACCACCATCATTACCTCTTCCTCCTCCACCTTTTCCTTATCTTCCTCAGATTTGTCATCAA
AAGAGGAATCTTCCGGAAGAGGAAGATGACAAATCTTGCCTCTTTTCTGGAAGAACAAATGAGTA
CTCTGGTTCACGAACTGTAATAGAGTGAAAAAGAGTATATTGCTTATATATGCTTTGGCATAAGC
AATTCCGCCAATCTCAAAGATATTTGTTATGTTCATAATGAGTACTCTTTGTTCACGAACCGTAA
TAGAGTTCATTCCTGTACATTGCTTATATATGAGGCTTTTTAGCC
Right flanking sequence: Indices 91508 -- 92007
GGTGCGAAAGCAAGCAATTTCGCCAATCCAACCCAAGATCAAGTGCTTTGTCCGGGCTTGAACCA
TGTCTCCCGAAATCTTTCAGTACATATGGCGTAAGACGATTTCACATATCGAGGTCGGAATGGGA
TCGGGTGTTTTCATGTCTTACCATAGCGCCCAGAAAAAACAATATTAATTAATGAACAAATCTTA
ATGAACAAATAGTGAAGGCCATGCACCGCTCCGACCTTTTCGGAGCATGAGATTTGTTTTTTCAA
AAGAGAGAAAAAGATTAAATTCTTGATGAAAGAGGCTACCCTATCCAGACAGAGTCTGAAGGCAC
TCTTCGGAACTAGTGTGGGATCAGGAACAAGATTATAACAAGATTCTTTACGCCGCCCGGCAGAG
CAGGACGATTCTTTAGGTCAGGCAGAGCAGGGCGAGCGAAGCCTTGCGGTCGGTTTTTGGTTCAC
CAGCAGAAGAGTCAGGAGGATCCTCTGGCCTAGCTAGGATTTGTT
Found at i:91518 original size:35 final size:35
Alignment explanation
Indices: 91472--91538 Score: 134
Period size: 35 Copynumber: 1.9 Consensus size: 35
91462 CTTGTAATAT
91472 AGGTGCGAAAGCAAGCAATTTCGCCAATCCAAAAG
1 AGGTGCGAAAGCAAGCAATTTCGCCAATCCAAAAG
91507 AGGTGCGAAAGCAAGCAATTTCGCCAATCCAA
1 AGGTGCGAAAGCAAGCAATTTCGCCAATCCAA
91539 CCCAAGATCA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 32 1.00
ACGTcount: A:0.39, C:0.24, G:0.22, T:0.15
Consensus pattern (35 bp):
AGGTGCGAAAGCAAGCAATTTCGCCAATCCAAAAG
Left flanking sequence: Indices 90972 -- 91471
AGATATTTGTTATGTTCATAATGAGTACTCTTTGTTCACGAACCGTAATAGAGTTCATTCCTGTA
CATTGCTTATATATGAGGCTTTTTAGCCAAGCAATTTCGCCAATCTCAAAGATATTTGTTATGAA
CAACAATTGAGTACTCTTTATTCACGAACTGTAACAGAGTGAATTCATGTACATTGCTTATATAT
GATGCTTTGGCATAAGCAATTCCGCCGATCCAAGAGATTATATATGATTTCTGATAAGCAATTTT
GCCAATCTCAAAGATATTTGTTATGTTCATAATGAGTACATAAATTCACGAACCGTAATAGAGTT
CATTCCTGTACATTGCTTGTAATATAGGTGCGAAAGCAAGCAATTCCGCCAATCCAAAAGATTCT
ATATGATGCTTTGGCATAAGCAATTCCCAGATCTCAAAGATATTTGTTATGTTCATAATGAGTAC
TCTTTATTTGTAATAGAGTTCATTTCTGTACATTGCTTGTAATAT
Right flanking sequence: Indices 91539 -- 92038
CCCAAGATCAAGTGCTTTGTCCGGGCTTGAACCATGTCTCCCGAAATCTTTCAGTACATATGGCG
TAAGACGATTTCACATATCGAGGTCGGAATGGGATCGGGTGTTTTCATGTCTTACCATAGCGCCC
AGAAAAAACAATATTAATTAATGAACAAATCTTAATGAACAAATAGTGAAGGCCATGCACCGCTC
CGACCTTTTCGGAGCATGAGATTTGTTTTTTCAAAAGAGAGAAAAAGATTAAATTCTTGATGAAA
GAGGCTACCCTATCCAGACAGAGTCTGAAGGCACTCTTCGGAACTAGTGTGGGATCAGGAACAAG
ATTATAACAAGATTCTTTACGCCGCCCGGCAGAGCAGGACGATTCTTTAGGTCAGGCAGAGCAGG
GCGAGCGAAGCCTTGCGGTCGGTTTTTGGTTCACCAGCAGAAGAGTCAGGAGGATCCTCTGGCCT
AGCTAGGATTTGTTTTCTTCGAACCTCTCCTCCTGTTTCTGGATT
Found at i:91705 original size:14 final size:14
Alignment explanation
Indices: 91686--91712 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
91676 ACAATATTAA
91686 TTAATGAACAAATC
1 TTAATGAACAAATC
91700 TTAATGAACAAAT
1 TTAATGAACAAAT
91713 AGTGAAGGCC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.52, C:0.11, G:0.07, T:0.30
Consensus pattern (14 bp):
TTAATGAACAAATC
Left flanking sequence: Indices 91186 -- 91685
TTCCGCCGATCCAAGAGATTATATATGATTTCTGATAAGCAATTTTGCCAATCTCAAAGATATTT
GTTATGTTCATAATGAGTACATAAATTCACGAACCGTAATAGAGTTCATTCCTGTACATTGCTTG
TAATATAGGTGCGAAAGCAAGCAATTCCGCCAATCCAAAAGATTCTATATGATGCTTTGGCATAA
GCAATTCCCAGATCTCAAAGATATTTGTTATGTTCATAATGAGTACTCTTTATTTGTAATAGAGT
TCATTTCTGTACATTGCTTGTAATATAGGTGCGAAAGCAAGCAATTTCGCCAATCCAAAAGAGGT
GCGAAAGCAAGCAATTTCGCCAATCCAACCCAAGATCAAGTGCTTTGTCCGGGCTTGAACCATGT
CTCCCGAAATCTTTCAGTACATATGGCGTAAGACGATTTCACATATCGAGGTCGGAATGGGATCG
GGTGTTTTCATGTCTTACCATAGCGCCCAGAAAAAACAATATTAA
Right flanking sequence: Indices 91713 -- 92212
AGTGAAGGCCATGCACCGCTCCGACCTTTTCGGAGCATGAGATTTGTTTTTTCAAAAGAGAGAAA
AAGATTAAATTCTTGATGAAAGAGGCTACCCTATCCAGACAGAGTCTGAAGGCACTCTTCGGAAC
TAGTGTGGGATCAGGAACAAGATTATAACAAGATTCTTTACGCCGCCCGGCAGAGCAGGACGATT
CTTTAGGTCAGGCAGAGCAGGGCGAGCGAAGCCTTGCGGTCGGTTTTTGGTTCACCAGCAGAAGA
GTCAGGAGGATCCTCTGGCCTAGCTAGGATTTGTTTTCTTCGAACCTCTCCTCCTGTTTCTGGAT
TTCCTGGTGGGTGGCTGCTTCATACAGTGAACACGCCATATCCAACCCTCGAATTGCCTCACAAA
TGTCAGACTCGTTCATATTTTGGAGGTTTTTTCTCATTTTAGGGTTGTTTATTTATCCCGAAAAT
GAAGCGGCGTTTATACCTGATTGGCCTGATTGGGTTTGAAGATAC
Found at i:92599 original size:21 final size:20
Alignment explanation
Indices: 92575--92623 Score: 64
Period size: 20 Copynumber: 2.4 Consensus size: 20
92565 AATATTGGGA
92575 TGAATATT-AACCAAACAATTG
1 TGAATATTAAACC-AA-AATTG
*
92596 TGAATATTAAACCCAAATTG
1 TGAATATTAAACCAAAATTG
92616 TGAATATT
1 TGAATATT
92624 CTTATATATG
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
20 13 0.50
21 9 0.35
22 4 0.15
ACGTcount: A:0.45, C:0.12, G:0.10, T:0.33
Consensus pattern (20 bp):
TGAATATTAAACCAAAATTG
Left flanking sequence: Indices 92075 -- 92574
ATATCCAACCCTCGAATTGCCTCACAAATGTCAGACTCGTTCATATTTTGGAGGTTTTTTCTCAT
TTTAGGGTTGTTTATTTATCCCGAAAATGAAGCGGCGTTTATACCTGATTGGCCTGATTGGGTTT
GAAGATACCATAATGAAATTCTGGATCAGATTCGAGGCTTGAAAATTTCGCATTTTTGCACCATT
ATTTCCCAATCATCTCTCTGGTTATTAAGCCAATCATTTGTTAAGGGCAGTTCAATTCTCCGTCC
TCCGCTCTTGCCTCAAGAGTGCTCTTCATCTCCAGTAACTCTTTGGTCCGATACCCATCATTTGT
CAAACTGGTTGGATTTGCAAAAAGCCGTGAGAACAGGATTTTTGCTGTAATAACAGATATAGCCA
AAAATGATAATCCATTGTTCTTCTCGTTTTTTTTCGTTTTTTTGAGAAGATTTGTGCGAAACCTA
CAAAAACCTACACCTTACAACGGTATTTATAGAGAAATATTGGGA
Right flanking sequence: Indices 92624 -- 93123
CTTATATATGTCAATTTCCTCAAAGTCAACGTTAACACCTTATTGTATACCATGGAATCTTACAA
GGTGACATTCCCAATAATACGAACGTGAACTCAAGGAGGTCAATATTAACGGCCAGGAACATTGT
AGAAATTAATCTCGACTTCCAGACCTATCTACTTACCTAGAGTCCGCGGGACCTGTATGTCTAGA
TCCCCAGGTCCTTCCGCCTTGCCAGGTGGCCCTTTGCCAGGACCAACTACATTAGTCAATCGATT
GTATGCAAATGTGAAGGTGAAGGTGTCAGTTTCACGTTTTAAGGTGTAGGTTTTACGCTGAAAGG
TGTAGGTTTTACGCGGAAAGGTGTAGGTTTTTTTTCAATTACAGAGTGAGTGTGTAGGTTGTGTA
GGTTTGAGAGAAATCTTTATAGGATATTTTGACCGGGATTCACCTTATGCAGTCGGATATGTCAC
GTTGTCTTTCAATGTCACGATTTACCCAGAGAGGCAATCGACTCA
Found at i:92979 original size:21 final size:21
Alignment explanation
Indices: 92924--92979 Score: 103
Period size: 21 Copynumber: 2.7 Consensus size: 21
92914 TTCACGTTTT
*
92924 AAGGTGTAGGTTTTACGCTGA
1 AAGGTGTAGGTTTTACGCGGA
92945 AAGGTGTAGGTTTTACGCGGA
1 AAGGTGTAGGTTTTACGCGGA
92966 AAGGTGTAGGTTTT
1 AAGGTGTAGGTTTT
92980 TTTTCAATTA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 34 1.00
ACGTcount: A:0.23, C:0.07, G:0.36, T:0.34
Consensus pattern (21 bp):
AAGGTGTAGGTTTTACGCGGA
Left flanking sequence: Indices 92424 -- 92923
CCGTGAGAACAGGATTTTTGCTGTAATAACAGATATAGCCAAAAATGATAATCCATTGTTCTTCT
CGTTTTTTTTCGTTTTTTTGAGAAGATTTGTGCGAAACCTACAAAAACCTACACCTTACAACGGT
ATTTATAGAGAAATATTGGGATGAATATTAACCAAACAATTGTGAATATTAAACCCAAATTGTGA
ATATTCTTATATATGTCAATTTCCTCAAAGTCAACGTTAACACCTTATTGTATACCATGGAATCT
TACAAGGTGACATTCCCAATAATACGAACGTGAACTCAAGGAGGTCAATATTAACGGCCAGGAAC
ATTGTAGAAATTAATCTCGACTTCCAGACCTATCTACTTACCTAGAGTCCGCGGGACCTGTATGT
CTAGATCCCCAGGTCCTTCCGCCTTGCCAGGTGGCCCTTTGCCAGGACCAACTACATTAGTCAAT
CGATTGTATGCAAATGTGAAGGTGAAGGTGTCAGTTTCACGTTTT
Right flanking sequence: Indices 92980 -- 93479
TTTTCAATTACAGAGTGAGTGTGTAGGTTGTGTAGGTTTGAGAGAAATCTTTATAGGATATTTTG
ACCGGGATTCACCTTATGCAGTCGGATATGTCACGTTGTCTTTCAATGTCACGATTTACCCAGAG
AGGCAATCGACTCACCAATGCAGTGGGGAGCTTAAATCAGCTGGCAGACAAGCTAGTGAAGGCCA
GCCAGGCGGGTGCTCCTTGAGGAGGAGCACCCACCTGGCTTACAAGCTTGTGTGCGGCCAGTGAA
GACAAGCTAGTGTGCGGCCAGGGTACGTAGGGGCCACCGAATACAATGCCAGCTAGGGAAGGCCA
GGCGCGGGTGCTCCTTTTTAGGAGGAGCACCCACCTGGCCACCGAATACAATGCCAGCTAGGGAA
GGCGGGAGCTTTAGGAGGAGCACCCACCTGGCCAACCACAGCTATTTCGGCCTATTTGAGGTGAA
TATTCACAGCTATTTCGGCCTATTTGAGGTGAATATTCACAGCTT
Found at i:93448 original size:33 final size:33
Alignment explanation
Indices: 93406--93478 Score: 146
Period size: 33 Copynumber: 2.2 Consensus size: 33
93396 CCTGGCCAAC
93406 CACAGCTATTTCGGCCTATTTGAGGTGAATATT
1 CACAGCTATTTCGGCCTATTTGAGGTGAATATT
93439 CACAGCTATTTCGGCCTATTTGAGGTGAATATT
1 CACAGCTATTTCGGCCTATTTGAGGTGAATATT
93472 CACAGCT
1 CACAGCT
93479 TATGTATTTT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 40 1.00
ACGTcount: A:0.25, C:0.21, G:0.21, T:0.34
Consensus pattern (33 bp):
CACAGCTATTTCGGCCTATTTGAGGTGAATATT
Left flanking sequence: Indices 92906 -- 93405
GTGTCAGTTTCACGTTTTAAGGTGTAGGTTTTACGCTGAAAGGTGTAGGTTTTACGCGGAAAGGT
GTAGGTTTTTTTTCAATTACAGAGTGAGTGTGTAGGTTGTGTAGGTTTGAGAGAAATCTTTATAG
GATATTTTGACCGGGATTCACCTTATGCAGTCGGATATGTCACGTTGTCTTTCAATGTCACGATT
TACCCAGAGAGGCAATCGACTCACCAATGCAGTGGGGAGCTTAAATCAGCTGGCAGACAAGCTAG
TGAAGGCCAGCCAGGCGGGTGCTCCTTGAGGAGGAGCACCCACCTGGCTTACAAGCTTGTGTGCG
GCCAGTGAAGACAAGCTAGTGTGCGGCCAGGGTACGTAGGGGCCACCGAATACAATGCCAGCTAG
GGAAGGCCAGGCGCGGGTGCTCCTTTTTAGGAGGAGCACCCACCTGGCCACCGAATACAATGCCA
GCTAGGGAAGGCGGGAGCTTTAGGAGGAGCACCCACCTGGCCAAC
Right flanking sequence: Indices 93479 -- 93978
TATGTATTTTCGGCGCCAAAATAGATATTGAGGTGAGATATTTGTAGTGTGCCCCTTAAACAGGG
CGCGTAAGTACACATATCTTTGTTTCTTTGGTAGTGTGCCCCTTAAACAGGGCGCGTAAGTACAT
ATCTATCTCTGTAGTTAGCCCCTCTATAAAGGGCACAGCACTGGCACATATCTATATCTATATCT
GTAGTTAGCCCCTAAAACACACATAGGGTTTTCATTGATCCGTCACATCGTCACATCGTCACATC
CTCAAACATAGGGGTTGAGGATCCGTCACATCGTCACATCGTCACATCCTGTTTAAGGTCTCAGG
CTGAAGATTTCTCTTTTCTGGCTCTAAATCCCTCAGGGTTATTGCGCCTCCGCCAGTGGCCACCT
TCCACCATGCCAGTGACCACCTCCTACAATGCCAGCTTCAGGCCAGGCGGGAGCTCCTCCTCAAA
GGAGCTCCCTCCTGGCCACCCATTCTGTCTGTAGTTAGCCCCGCA
Found at i:93727 original size:8 final size:8
Alignment explanation
Indices: 93714--93738 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
93704 TTCATTGATC
93714 CGTCACAT
1 CGTCACAT
93722 CGTCACAT
1 CGTCACAT
93730 CGTCACAT
1 CGTCACAT
93738 C
1 C
93739 CTCAAACATA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.24, C:0.40, G:0.12, T:0.24
Consensus pattern (8 bp):
CGTCACAT
Left flanking sequence: Indices 93214 -- 93713
TTACAAGCTTGTGTGCGGCCAGTGAAGACAAGCTAGTGTGCGGCCAGGGTACGTAGGGGCCACCG
AATACAATGCCAGCTAGGGAAGGCCAGGCGCGGGTGCTCCTTTTTAGGAGGAGCACCCACCTGGC
CACCGAATACAATGCCAGCTAGGGAAGGCGGGAGCTTTAGGAGGAGCACCCACCTGGCCAACCAC
AGCTATTTCGGCCTATTTGAGGTGAATATTCACAGCTATTTCGGCCTATTTGAGGTGAATATTCA
CAGCTTATGTATTTTCGGCGCCAAAATAGATATTGAGGTGAGATATTTGTAGTGTGCCCCTTAAA
CAGGGCGCGTAAGTACACATATCTTTGTTTCTTTGGTAGTGTGCCCCTTAAACAGGGCGCGTAAG
TACATATCTATCTCTGTAGTTAGCCCCTCTATAAAGGGCACAGCACTGGCACATATCTATATCTA
TATCTGTAGTTAGCCCCTAAAACACACATAGGGTTTTCATTGATC
Right flanking sequence: Indices 93739 -- 94238
CTCAAACATAGGGGTTGAGGATCCGTCACATCGTCACATCGTCACATCCTGTTTAAGGTCTCAGG
CTGAAGATTTCTCTTTTCTGGCTCTAAATCCCTCAGGGTTATTGCGCCTCCGCCAGTGGCCACCT
TCCACCATGCCAGTGACCACCTCCTACAATGCCAGCTTCAGGCCAGGCGGGAGCTCCTCCTCAAA
GGAGCTCCCTCCTGGCCACCCATTCTGTCTGTAGTTAGCCCCGCAGGGCCCGTAAGTACACATAT
CTTTGTTTCTTTTGGAGTGAGCCCCTTAAACAGGGCGCAAAGTAAGTGCACATATCTTTGTTTCT
ACCCTCCCCGAAGGGCGCAAAGTAAGTGCACATATCTATATCTATATATGTAGTGAGCCCCTTAA
ACAGGGTAGTAAGTACACATATCTTTTCTACCCTCCCGAAGGGCGCGTAAGTACACATATCTTTC
TACCCTCCCTCCCGAAGAGCACATAGTAGTTTGTGGAGTGCCACC
Found at i:93775 original size:8 final size:8
Alignment explanation
Indices: 93762--93786 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
93752 GTTGAGGATC
93762 CGTCACAT
1 CGTCACAT
93770 CGTCACAT
1 CGTCACAT
93778 CGTCACAT
1 CGTCACAT
93786 C
1 C
93787 CTGTTTAAGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.24, C:0.40, G:0.12, T:0.24
Consensus pattern (8 bp):
CGTCACAT
Left flanking sequence: Indices 93262 -- 93761
GTACGTAGGGGCCACCGAATACAATGCCAGCTAGGGAAGGCCAGGCGCGGGTGCTCCTTTTTAGG
AGGAGCACCCACCTGGCCACCGAATACAATGCCAGCTAGGGAAGGCGGGAGCTTTAGGAGGAGCA
CCCACCTGGCCAACCACAGCTATTTCGGCCTATTTGAGGTGAATATTCACAGCTATTTCGGCCTA
TTTGAGGTGAATATTCACAGCTTATGTATTTTCGGCGCCAAAATAGATATTGAGGTGAGATATTT
GTAGTGTGCCCCTTAAACAGGGCGCGTAAGTACACATATCTTTGTTTCTTTGGTAGTGTGCCCCT
TAAACAGGGCGCGTAAGTACATATCTATCTCTGTAGTTAGCCCCTCTATAAAGGGCACAGCACTG
GCACATATCTATATCTATATCTGTAGTTAGCCCCTAAAACACACATAGGGTTTTCATTGATCCGT
CACATCGTCACATCGTCACATCCTCAAACATAGGGGTTGAGGATC
Right flanking sequence: Indices 93787 -- 94286
CTGTTTAAGGTCTCAGGCTGAAGATTTCTCTTTTCTGGCTCTAAATCCCTCAGGGTTATTGCGCC
TCCGCCAGTGGCCACCTTCCACCATGCCAGTGACCACCTCCTACAATGCCAGCTTCAGGCCAGGC
GGGAGCTCCTCCTCAAAGGAGCTCCCTCCTGGCCACCCATTCTGTCTGTAGTTAGCCCCGCAGGG
CCCGTAAGTACACATATCTTTGTTTCTTTTGGAGTGAGCCCCTTAAACAGGGCGCAAAGTAAGTG
CACATATCTTTGTTTCTACCCTCCCCGAAGGGCGCAAAGTAAGTGCACATATCTATATCTATATA
TGTAGTGAGCCCCTTAAACAGGGTAGTAAGTACACATATCTTTTCTACCCTCCCGAAGGGCGCGT
AAGTACACATATCTTTCTACCCTCCCTCCCGAAGAGCACATAGTAGTTTGTGGAGTGCCACCTTC
CCAAAAGAAGGTGGCACTCCAACTCAAATGAAATTGAAGATTTGT
Found at i:93883 original size:22 final size:22
Alignment explanation
Indices: 93855--93903 Score: 64
Period size: 22 Copynumber: 2.2 Consensus size: 22
93845 TTGCGCCTCC
* *
93855 GCCAGTGGCCACCTTCC-ACCAT
1 GCCAGTGACCACC-TCCTACAAT
93877 GCCAGTGACCACCTCCTACAAT
1 GCCAGTGACCACCTCCTACAAT
93899 GCCAG
1 GCCAG
93904 CTTCAGGCCA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 3 0.12
22 21 0.88
ACGTcount: A:0.22, C:0.43, G:0.18, T:0.16
Consensus pattern (22 bp):
GCCAGTGACCACCTCCTACAAT
Left flanking sequence: Indices 93355 -- 93854
ATGCCAGCTAGGGAAGGCGGGAGCTTTAGGAGGAGCACCCACCTGGCCAACCACAGCTATTTCGG
CCTATTTGAGGTGAATATTCACAGCTATTTCGGCCTATTTGAGGTGAATATTCACAGCTTATGTA
TTTTCGGCGCCAAAATAGATATTGAGGTGAGATATTTGTAGTGTGCCCCTTAAACAGGGCGCGTA
AGTACACATATCTTTGTTTCTTTGGTAGTGTGCCCCTTAAACAGGGCGCGTAAGTACATATCTAT
CTCTGTAGTTAGCCCCTCTATAAAGGGCACAGCACTGGCACATATCTATATCTATATCTGTAGTT
AGCCCCTAAAACACACATAGGGTTTTCATTGATCCGTCACATCGTCACATCGTCACATCCTCAAA
CATAGGGGTTGAGGATCCGTCACATCGTCACATCGTCACATCCTGTTTAAGGTCTCAGGCTGAAG
ATTTCTCTTTTCTGGCTCTAAATCCCTCAGGGTTATTGCGCCTCC
Right flanking sequence: Indices 93904 -- 94403
CTTCAGGCCAGGCGGGAGCTCCTCCTCAAAGGAGCTCCCTCCTGGCCACCCATTCTGTCTGTAGT
TAGCCCCGCAGGGCCCGTAAGTACACATATCTTTGTTTCTTTTGGAGTGAGCCCCTTAAACAGGG
CGCAAAGTAAGTGCACATATCTTTGTTTCTACCCTCCCCGAAGGGCGCAAAGTAAGTGCACATAT
CTATATCTATATATGTAGTGAGCCCCTTAAACAGGGTAGTAAGTACACATATCTTTTCTACCCTC
CCGAAGGGCGCGTAAGTACACATATCTTTCTACCCTCCCTCCCGAAGAGCACATAGTAGTTTGTG
GAGTGCCACCTTCCCAAAAGAAGGTGGCACTCCAACTCAAATGAAATTGAAGATTTGTCAAATGC
CGTAATAAGAGTATATAACAAGATTAAGCATAATTTATATAAAGATTTGAGCTAAACCTACACCA
CCTACACATTCACTCTAAGTAGGTTGAAAAACCTACATCAACCTA
Found at i:94129 original size:101 final size:90
Alignment explanation
Indices: 93973--94190 Score: 231
Period size: 97 Copynumber: 2.3 Consensus size: 90
93963 TGTAGTTAGC
* * * * * * * *
93973 CCCGCAGGGCCCGTAAGTACACATATCTTTGTTTCT-TTTGGAGTGAGCCCCTTAAACAGGGCGC
1 CCCGAAGGGCGCGTAAGTACACATATCTATATCTATATATGTAGTGAGCCCCTTAAACA-GG-G-
*
94037 AAAGTAAGTGCACATATCTTTGTTTCTACCCT
63 -AAGTAAGTACACATATC--T-TTTCTACCCT
*
94069 CCCCGAAGGGCGCAAAGTAAGTGCACATATCTATATCTATATATGTAGTGAGCCCCTTAAACAGG
1 -CCCGAAGGGCGC---GTAAGTACACATATCTATATCTATATATGTAGTGAGCCCCTTAAACAGG
*
94134 GTAGTAAGTACACATATCTTTTCTACCCT
62 GAAGTAAGTACACATATCTTTTCTACCCT
94163 CCCGAAGGGCGCGTAAGTACACATATCT
1 CCCGAAGGGCGCGTAAGTACACATATCT
94191 TTCTACCCTC
Statistics
Matches: 105, Mismatches: 12, Indels: 15
0.80 0.09 0.11
Matches are distributed among these distances:
90 15 0.14
93 12 0.11
94 10 0.10
95 1 0.01
97 25 0.24
99 1 0.01
100 21 0.20
101 20 0.19
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.28
Consensus pattern (90 bp):
CCCGAAGGGCGCGTAAGTACACATATCTATATCTATATATGTAGTGAGCCCCTTAAACAGGGAAG
TAAGTACACATATCTTTTCTACCCT
Left flanking sequence: Indices 93473 -- 93972
ACAGCTTATGTATTTTCGGCGCCAAAATAGATATTGAGGTGAGATATTTGTAGTGTGCCCCTTAA
ACAGGGCGCGTAAGTACACATATCTTTGTTTCTTTGGTAGTGTGCCCCTTAAACAGGGCGCGTAA
GTACATATCTATCTCTGTAGTTAGCCCCTCTATAAAGGGCACAGCACTGGCACATATCTATATCT
ATATCTGTAGTTAGCCCCTAAAACACACATAGGGTTTTCATTGATCCGTCACATCGTCACATCGT
CACATCCTCAAACATAGGGGTTGAGGATCCGTCACATCGTCACATCGTCACATCCTGTTTAAGGT
CTCAGGCTGAAGATTTCTCTTTTCTGGCTCTAAATCCCTCAGGGTTATTGCGCCTCCGCCAGTGG
CCACCTTCCACCATGCCAGTGACCACCTCCTACAATGCCAGCTTCAGGCCAGGCGGGAGCTCCTC
CTCAAAGGAGCTCCCTCCTGGCCACCCATTCTGTCTGTAGTTAGC
Right flanking sequence: Indices 94191 -- 94690
TTCTACCCTCCCTCCCGAAGAGCACATAGTAGTTTGTGGAGTGCCACCTTCCCAAAAGAAGGTGG
CACTCCAACTCAAATGAAATTGAAGATTTGTCAAATGCCGTAATAAGAGTATATAACAAGATTAA
GCATAATTTATATAAAGATTTGAGCTAAACCTACACCACCTACACATTCACTCTAAGTAGGTTGA
AAAACCTACATCAACCTACACCTTCCAGCGGGATTTCCATCGAATTAATTGGAAAACCTACACAC
ATTTCGGATGTGACGATGTTCAGAAAAATATTAACCCTCTTTTCCGCAGGAGAAATCAAAAGAGA
TGTTTAAGTGCTATGCCCTGCGGGGCTAAACCCAGAGAGCTTTTCACTGCTAAGCCCTGCGGGGC
TAATGGTAACGCATTTCTATATGCCTTCACTATGGCATGCCCAGAGATTTTGACTGTCCCAAGGA
GCTAAACTAAGAAATAATGAGATGTTCAAGTGCTGTGCCCTGCGG
Found at i:94837 original size:26 final size:26
Alignment explanation
Indices: 94801--94851 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
94791 GATTGAGGAG
94801 GAGGTGCCCTTCCGGGCTTTCTATAT
1 GAGGTGCCCTTCCGGGCTTTCTATAT
94827 GAGGTGCCCTTCCGGGCTTTCTATA
1 GAGGTGCCCTTCCGGGCTTTCTATA
94852 CTTATGGGTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.12, C:0.27, G:0.27, T:0.33
Consensus pattern (26 bp):
GAGGTGCCCTTCCGGGCTTTCTATAT
Left flanking sequence: Indices 94301 -- 94800
AGAGTATATAACAAGATTAAGCATAATTTATATAAAGATTTGAGCTAAACCTACACCACCTACAC
ATTCACTCTAAGTAGGTTGAAAAACCTACATCAACCTACACCTTCCAGCGGGATTTCCATCGAAT
TAATTGGAAAACCTACACACATTTCGGATGTGACGATGTTCAGAAAAATATTAACCCTCTTTTCC
GCAGGAGAAATCAAAAGAGATGTTTAAGTGCTATGCCCTGCGGGGCTAAACCCAGAGAGCTTTTC
ACTGCTAAGCCCTGCGGGGCTAATGGTAACGCATTTCTATATGCCTTCACTATGGCATGCCCAGA
GATTTTGACTGTCCCAAGGAGCTAAACTAAGAAATAATGAGATGTTCAAGTGCTGTGCCCTGCGG
GTTTAACTAAACTAAGTTAAGTAAGGGTTCTTAAGGGGGTGCCCTTCCCGGGAAGGGCTTTCTAT
ACTATACTTATAAGGGTGCCCGGAAGGGTTTTATAGATTGAGGAG
Right flanking sequence: Indices 94852 -- 95351
CTTATGGGTTCAGTACGGCTTAGCCCAGGGGCTAACCACAAAAGAACAATATTTCGTGTGTGCGG
GGGTTGGCAGGAGGTGCCCTGCGGGGCTCATGAGAAAAGAACAAGATATCTTCTTTTGCTATGCC
CTTAGGGACTTAAGTTATCCTTTTGAACATTGTGTCTTTATATTGCCTTGGTTTGAAAAGTTTTT
CAATATAGCTTTCACCATCTAGCTTGAAAAGCTAAATATGCTCTTTTTAGCCTTTGGTCTGCTAT
GGCTATACGTTCTTTATACTCCTGGTCTTGGATCCGAACTTGTCATACTCTGGTACTCGGCTTCA
TAAACACCACCACACTTGCTGCTGCCGTTATCACTTCGTAATTTTCGTTCAAGTGCTAACACGAA
ATTATAGTTATAAGGCCATGGTGATGAAGGAAGGATAATGTTTTCTCACTTTCGTGGTATTGCTT
TCGAAGAACTTCAAAAGTGTAGCGAAGACTTTCTCTTTTGGTAAT
Found at i:108478 original size:23 final size:23
Alignment explanation
Indices: 108448--108493 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
108438 ATAAATAATC
108448 AATAAAGGAGAGGGTTGACAAGG
1 AATAAAGGAGAGGGTTGACAAGG
108471 AATAAAGGAGAGGGTTGACAAGG
1 AATAAAGGAGAGGGTTGACAAGG
108494 TTTGTAACGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.43, C:0.04, G:0.39, T:0.13
Consensus pattern (23 bp):
AATAAAGGAGAGGGTTGACAAGG
Left flanking sequence: Indices 107948 -- 108447
GCAAAAAGCCCCGAGAAACGTCAAACATCGAAAATACAATCCAAGGAGCAATCTTGGTATAGCAA
GCACTGGCTCCCAGTGCAACGTCAGAAAAAGCAATCAAAGATAAAATATAAGATAATGAAACGCA
CGTGGTGGTTACTATAGCGGTTCCCTTTTTTTTTTTAACAACCCGGAAAACGACCAAAAGCTCCT
GCAACAAAGCTACCAGGCAAGGGCAACAGTACTGGGAGTAAATACAAAATTGAATCCTTCTTCTT
TGGTGATCAAAATACAACTGATTATCTCGTTGGGGAGGAACAGGTCATAACACTTTTTTCATTCT
ATTACCTCATTCCATGGCAAGACATCTTCATGAAAAAAGAGAAAATTAAGAAAAAATAGGAATGA
AAAGAATGCAAGTCTTACTAGAGATCTCGCATGGTAAAAATGACTTTGCACCAAGCACACTCTTG
CTGGCTACTCGTACGTAATAATGGAATGGACTGATATAAATAATC
Right flanking sequence: Indices 108494 -- 108993
TTTGTAACGAAGGAGCGCTCTACACTCTACAGGCGCAGCCTGCGGAGGGTGCACTAATTAATCTG
ATGGAGCGTCGGCTGCTTGATTACCTCAACAAACATTCCCGCCAAAATTAGAAATAAGACGAGGC
CGCAAGCAAGTACGTACGGCCAAGCCAGCCGCCGGAGTAAGCCTGGCAAGGCAAAGGATGAGAAT
AAAGTGGCAATGGGAGGGCTCTCCGCTCTGCCATTTGCTTCCCCAAGCTCACTCGATGGAAATGG
TAAACAGGGCAGACTAATTGTGCCAACCTATAGGTTATCGGTTCAAGTCCGATAGTGAGCATACT
CGCTTGGTGGAAATGGTAAACGCAGCAGTCTCAAAATCTGTTCCTATGGGTTATCGGTTCGAATC
CGCTAGCGAGTATCTTAGTTTATGAATTGGAAATAAGGACGAGTATAACTTAATAGGTGAAAGTG
TCAGATTGTGAATTTGAAAACACGGGTTCGAATCCCGTTATTCGC
Found at i:118732 original size:21 final size:22
Alignment explanation
Indices: 118701--118748 Score: 89
Period size: 21 Copynumber: 2.2 Consensus size: 22
118691 GAGGGGCTCC
118701 ATAAATAAATGAGATCTCTATT
1 ATAAATAAATGAGATCTCTATT
118723 ATAAA-AAATGAGATCTCTATT
1 ATAAATAAATGAGATCTCTATT
118744 ATAAA
1 ATAAA
118749 CCTCTTCCCT
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
21 21 0.81
22 5 0.19
ACGTcount: A:0.50, C:0.08, G:0.08, T:0.33
Consensus pattern (22 bp):
ATAAATAAATGAGATCTCTATT
Left flanking sequence: Indices 118201 -- 118700
ACTATGATCATCCCGAATTTATCTTGACATATATTTACTAAATGTTAATATATTTCTTCTCTCAG
AGTTCGCTTCACATTGTTTATACTATCCCCGTAAGAAATAGGTATTATCCGAGGAGATATCCCCA
GAGGTTTGTAAGAATAAGGTATAGCACCAAATTTTTTATTGTAGTTATTCCTCTTGTTTATCGAA
CCTTCTCCTTATATTCTTCCGAAGGTGGTATCTTTGCCTCGTCCAAGTATGTTTCCAATCCGAAG
AAGAATCCACATTAAATGTATACTCCCTAGAAGATTAAGTTTGTCTTTAAGAGGACTTTTATTTG
AAAGTCGAAATATATATTTATCATAAATAAAAGGGTATTAAGGCTGGATGTTGTTCCTCTATTTT
AGGAGGGCAATAGTGGTTGGTGGTTGGTATACTTGTTTCAGAGGTAGAGTGAGATAAATTAGAGT
TAGCTCACTCTGATTCTGACGATCATTCTGAATTAGAGGGGCTCC
Right flanking sequence: Indices 118749 -- 119248
CCTCTTCCCTCACTTGTATCCCTGAAAGGTAAATACCCTCTTTCTTCCGAACCTTATTTACTTTG
AATCCTGCTTGTGTTAGAACTTCTATCAACTGGGTTACAATTTGGACGTGTCCCAACCAAGGGTT
GGAGACCTATTTTGAGAGTCCATACTTCATAAGTTGGATAGAGAGGGTTTCTTCTCTCAATTTAT
AGTTGGGACTTCAAGTCATGCCTCATTTTTAATCCTACGAAGGACCCTGGACCAGACTCTAACTG
TTCTTTAACCCAAGTCATGAGAGGATTTAATAACTCTTTGTTTTCTTGGTAATACTCCCGGAGAG
TTGGTACCCTCGTTTCTGTCGAAATCAAGTCAATTTTGGCTAGAGAAGAATCAATTGTCCAGATC
CACTGAAATATCCCTTCTAACTCATTTGCCAGAGGTCCTTTCCACCCTTCCCCCTGGAAAGTAGG
AGATCAGATCTTCTCTTTTATTCGAGATATTTTCAGCATGAAAGA
Found at i:121857 original size:24 final size:24
Alignment explanation
Indices: 121830--121897 Score: 100
Period size: 24 Copynumber: 2.8 Consensus size: 24
121820 CCTCAGTCCG
121830 ATACCTCGAAACCCAATATACTTC
1 ATACCTCGAAACCCAATATACTTC
* * *
121854 ATACTTCGGAACCAAATATACTTC
1 ATACCTCGAAACCCAATATACTTC
*
121878 ATACCTCGAATCCCAATATA
1 ATACCTCGAAACCCAATATA
121898 AGTACAAAAG
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 37 1.00
ACGTcount: A:0.38, C:0.29, G:0.06, T:0.26
Consensus pattern (24 bp):
ATACCTCGAAACCCAATATACTTC
Left flanking sequence: Indices 121330 -- 121829
ATGCTTTTTCTCACATATTACAACTTCACTTTTCTGCTGTTTTGTGACCACTTTTTTTTTGCAAT
TTTTTTAATTGAAAAAAAAAATTTTTCTCTTTAAACGGAAAGGACCTACCCTTCCATGTCTTCTA
TGCTTAAAGCAGGACAAACTAAAGTTAACCCTCTCTCGGCCTGGGCCGAGGAAGAGCTACAAGAA
GGACAAGGTTCGTATTAGGGGTGCACATGGAGATGGGAATCAGGGGATACCAAGAAGTAGGAAGG
AGAAAATTTTACCCGGCCTACGAAAGGTGGTGCAATAGAATAGGTTATATGCCCTTTTTTTTAAA
GCCGGAGATTATCAAACGACCTTCTTGACATTCTCCGAGACAAAGGATATAAGGTAAGTCGAGTT
CACAAAAAAAGGGAAGGTACATATATAGAAGGGGTAGAATTAAACCCCATTGTTGTTTTCCACCT
GGACTACCAGGGCTCCGATTAGCGATGTTGAAAGTCCTCAGTCCG
Right flanking sequence: Indices 121898 -- 122397
AGTACAAAAGTCAGGAAGGATTGTGTATTATGTTACTTGGAAAAGTTATGCAGAACTCCTCCTTT
GAAAGAAAAGATTAACAAGATGGCGAGATCCATAACCCTTGATTATGATTACGTAATGGGCGAGT
TGCTAAGGGGATTAGAGGCTCCCTCTGATAAATACCAGGAGGTTTTATATGTTCAAATAAGCAAA
GCTTTACGTACTATTCAAACTTTTGGTTTGATTCCCTATTCCTACATTCCAGGGGTGCCTCCCCA
CGAATTCTCCCGACGTCTTATAAGGACTCTCTTAACTCCGTTAAACGTAAAATAAGGGAAATTTA
CCTTGATACAGTAGGAAAAGCCCTCGAACCTGAAGGTTACCGCATAATCGATGTCGACCTAGCCT
CCTGTTATACGACCATACTGGTGGTGGTGGGCCTTTACCCCGGTGAACTGCCCTCCGTTTTGGCC
GCTTTAAGGAAAAGGTCACTTTGGGACCTATATAAAGGAACAATT
Found at i:124498 original size:89 final size:92
Alignment explanation
Indices: 124375--124593 Score: 293
Period size: 92 Copynumber: 2.4 Consensus size: 92
124365 GTTTGACGGG
* * * *
124375 AAAGAGACGGCTCATGTGAGAATGAACCCGAGAACCC-TAATAAGA-TGT-TCCGGAAGGTTTAT
1 AAAGAGATGGCTCATGTGAAAATGAACCCAAGAACCCGTAACAAGATTGTGTCCGGAAGGTTTAT
*
124437 GAGAGAAGAAAGGTTCGACTTTCTTCTT
66 AAGAGAAGAAAGGTTCGACTTTCTTC-T
* *
124465 AAA-AGATGGCTTATGTGAAAATGAACCCAAGAACCCGTAACAATATTGTGTCCGGAAGGTTTAT
1 AAAGAGATGGCTCATGTGAAAATGAACCCAAGAACCCGTAACAAGATTGTGTCCGGAAGGTTTAT
*
124529 AAGAGAAGAAAGGTTCGACTTTGTTCT
66 AAGAGAAGAAAGGTTCGACTTTCTTCT
* * * *
124556 AAAGAGATGGCTCATGTGATAATAAATCCAAAAACCCG
1 AAAGAGATGGCTCATGTGAAAATGAACCCAAGAACCCG
124594 GAATTTCTTT
Statistics
Matches: 112, Mismatches: 13, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
89 29 0.26
90 9 0.08
91 7 0.06
92 67 0.60
ACGTcount: A:0.37, C:0.16, G:0.23, T:0.24
Consensus pattern (92 bp):
AAAGAGATGGCTCATGTGAAAATGAACCCAAGAACCCGTAACAAGATTGTGTCCGGAAGGTTTAT
AAGAGAAGAAAGGTTCGACTTTCTTCT
Left flanking sequence: Indices 123875 -- 124374
GTTATGAAGAAATGCTTTAGCCGAAACCATCAAAAAGGAAAATTGAAAAGAAAACAAGTTTGGAC
TGAACCAACCAATATTTGGCGAAGTAAACTCATGGTCGAGGTTACTATTTTAAACTACACAGAAG
GAGGTTTTGCTGCAGCATTGGCAGGTCATATAGCTTTTCTTCCCAGGAGTGTTCGCCGAGGTGGA
AAACTAGAAATAACAATATTCCACTTTTCTTTGAGAATAAGGCAAAACTAGGGGTGGTCTGGGGG
AAAAGTAGGGAAAGCAATTATTTTTTTTAAATGGTTTCAACTTTTCAAAATTCAGAAAAATCTCC
AGTCAATTTTTCGAAAAAGTGGATTTTTTTTTGAAGATCGCGGGTCATGACGCTTTTCCTCCCCG
GAGTCTTCGCAAGAGTAGAAAACTAAAAAAGACATTCCACGTTTTGAGTATGAACCCAATAAACC
GTAATATCGTCGTCCAGGAGGTTGATGAGAGAAACGTTTGACGGG
Right flanking sequence: Indices 124594 -- 125093
GAATTTCTTTCTAGAAGTACAAAATCACACTGTGTTTTTTCCAAGGCCGCCAGGACTATGTATAA
GCGAATTAAGGACGATAGCTACCTAATCTACGATGTGATATTGCGTAGCATGCGGGGAGAGAGGA
TCGCACTATCTGTTTGGCGGATTGTGCAAAATCCCGTGGTGGAAATCCGCTCTCGTTTGGTTTAT
TTATGCGCTAGCTTAAAACTTATCGGATCATAGCCGCCGAATAGTGGCCGTATAAACGAACGTGA
TGCAGTGTGCTTAGCTTCCGTATGAGATCATTGCACCTATTATGCAGTTGATTGGAATAGAGGAC
CACTATCCCCACTGTGGTGGCCTTTCCAAGCACAGGCAGAAGGCCCACTTAACCACTTAAGAAGG
GCCACTTACGGATAACATCAGCTATGTAATATATCTTATATGTATTATCGCTGGGCGCGCAGCGA
TCAATCAGTGTAGATTATTATTGATGACGCTAACAGTCGAAGAGA
Found at i:130370 original size:7 final size:8
Alignment explanation
Indices: 130344--130374 Score: 53
Period size: 8 Copynumber: 3.8 Consensus size: 8
130334 GGAACAAAAT
130344 AAAAAGAA
1 AAAAAGAA
130352 TAAAAAGAA
1 -AAAAAGAA
130361 AAAAAGAA
1 AAAAAGAA
130369 AAAAAG
1 AAAAAG
130375 TTAAACGAGA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 14 0.64
9 8 0.36
ACGTcount: A:0.84, C:0.00, G:0.13, T:0.03
Consensus pattern (8 bp):
AAAAAGAA
Left flanking sequence: Indices 129844 -- 130343
TGAAGCTATTCCTACGTCAAATTAATTTTGTATTTAAGATATATGGATATAAAGCTGGTGCCAAA
TACGACATCAAAGCACGAATAGCTTCCCTTGAAGTCTCAATTCCAAAACTCGAAGGAACTCTATT
TTATTACCATGGACGACTGGACTCAGATTTTTTTCCTGACCAGGAACGCGACTTCGTGAGAGAGA
TTATAAAGTCCCTGGGGAGGGAAAACGGAACCGCGAGTCCTTGACGCAAGAATTGGTTACACTTT
CTAAACAGGATAAACTCCACCCTCATTCATATTAAATTGGGGTATGGGGGGAAGTCCACGAGAGA
TCTTATTACGAGGAAAACCCCAAGGTATATTGAGATTATTATTTTTAGGTAAGCCTCTCTATAAG
TGAAATCCAATTCTCTGCCATGGAAATAATCAGAACCCAGTCATTGATCATAGACTTGGAAGCCG
ATCTTTCCGACTGAACCCGAACGAATGGTAAGTGTGGAACAAAAT
Right flanking sequence: Indices 130375 -- 130874
TTAAACGAGACCGTATATCCTTGGTATCTTAGCTAAAATACTTGGAATAATAATACCACTTTCAC
CAGGAGTAGCTTTTTCAGTTTCAGCTGAACGTAAAGTAATGGCTTCTATGCAACGTAGAAAGGGT
CCTAATGTAGTAGGATTGTTTGGGTTGTTACAACCTCTAGCAGATGGTTTTAAATTAATTATAAA
AGAACCTATTTTACCAAGTAGTGCTAATTTATTCATTTTTTCAATGGCTCCAGTAATTACATTTA
CGTCAAGTTTGGTTGCTCGGGCTGTTACACCTTTCGATTATGGTATGGTATTGTCAGATTCAAAT
GTAGGTATACTTTATTTATTTGCTATTTCTTCTCTAGGTGTTTATGGAATTATTACGGCGGGTTG
GTCTAGTAGGGTGGCCGTTCGGTCGCCTATGGTACTAGAGCCCTTGTGGTCAAATCTAATGTGCT
CTAGGTGTGTAACGATCTGCTCTACACAGGGTGTGGGGCAAAATG
Found at i:141608 original size:22 final size:22
Alignment explanation
Indices: 141580--141623 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
141570 GTCTACTTTT
141580 ATTAACTCCTTTCCGTCGTTCC
1 ATTAACTCCTTTCCGTCGTTCC
141602 ATTAACTCCTTTCCGTCGTTCC
1 ATTAACTCCTTTCCGTCGTTCC
141624 TTTGAAATCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.14, C:0.36, G:0.09, T:0.41
Consensus pattern (22 bp):
ATTAACTCCTTTCCGTCGTTCC
Left flanking sequence: Indices 141080 -- 141579
ACCATTTTTTGGTCTCGTTTTTAAAATGACATATTTTTACTTCGTTGGCGAGCAAACGAAGGGCG
AGGCGCAAAGTTGGCAACACGAACAACAAAGGTAAGAAAAAAACTGGAGGTAGGAAGAAAACTTA
TTTTTCCGGGAAAAGCCAAAAACTCCTGAGAGTAAAATAGCAGCTCGAAGGCCAAATGAATTGAT
GGAAAAACATCTTAAAGAATTATTTTTTATTCGTTCTATGGACTCCACTCCGTCGATGCGGGCTT
CGAAGGTTAAATAACGCTATGTATTTGCTACGCATGTAATGCATCTACTTAGTAGATGCATCGCG
TTGGTAAACCAACAATAAACAAGCGAAAAGAAAAGAAAAGAAAGAATAAGCTCGTCGTGGCAATC
CTTGTTTTTACGTACTTATTATGGTCAAAGCTCCTTCTGGTGTTTGGTATTCATCTTAGTACTAA
GACCTTCCCATTCTTTATGGTACCTTTACTGATGTGTCTACTTTT
Right flanking sequence: Indices 141624 -- 142123
TTTGAAATCAAAATATATTCGTGTTACGTTTATCAAAGATTCTTATTTACTGGTTTTAAGCTATA
AATGGTTATTCGGGGAAATATTTGTTCTTATCATTCCAGAGCACCGGCCTGCTCATTTTGGTACT
TCATATGGGGCTCCCCCCCCCCCTTTATATGACGACACTTTTTTAATATTAGATGTACTGGTAAA
TATAATACCATCTACTCATGCAATTTATTAGAAGATGCAAATGTGGCTCCACAGGAATTATTTGG
ATCATACCGGCGCAAGTGCTTTTTCTACCTGTGGAACCACATTGACAACCCCTGGGGTTACCTTA
GAGAAGGCTCGAATAGCACCTACTTTGCATCAATTTACAAACAGACATGTCGAATGTAAACCCGG
CGGCGGCCGGGAATCTTTTCGCAATGGTTTGCGTTTCGCCGAAGAGCATTAGGATGTCATCACAG
GAGGAGTCCTCGTGGGTGGAACTCCAATATGTGGAACCTGTAACC
Found at i:142903 original size:20 final size:20
Alignment explanation
Indices: 142863--142901 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
142853 GTTTTTCCTG
142863 GTTAACACATATAATATAAA
1 GTTAACACATATAATATAAA
142883 GTTAACACATAT-ATATAAA
1 GTTAACACATATAATATAAA
142902 AGGTTCGAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 7 0.37
20 12 0.63
ACGTcount: A:0.54, C:0.10, G:0.05, T:0.31
Consensus pattern (20 bp):
GTTAACACATATAATATAAA
Left flanking sequence: Indices 142363 -- 142862
ATACCTTTTTAGGATATTCTGTAGTAAATAGAAAGCTATGCTTTCTTTTTTAGTGCACTCATTCC
GTGTTTGGGTTACACTTCAGTCCACACTTCATATGTACGTAGTTCAAGTTCTCGACCTATTTAGC
AAAGATTGTTTTGCTTGCTTCTGGCAGATCGTTTACTTTCAGGTTGGATTGGATGTCAACCTGTG
GTGTGGAGGCACCATCCCTCGAATGTAACTATTGGACAAATGGCTCCAGTAGGTTCTTCCTCTTA
TTTTGCCATTACGCCCCAAAAAAAAAGGCCAATTAGAGGCCAGATTAATCAAGAGTGCTCATACT
GGCAAATCAATGGATTCGCCAGCATTCGAATCTACTATTCCGTCTGCAGGGTTCTTTTCTTTCTT
AGGTGATACTACGCATCCTCTGATTCCCCCACTTGGAACATAGTTCTAGCTTGGATCTCTAAGTA
TTATGAGTCTAGGCCCCAGGTTGCTGGAAGTACAAGTTTTTCCTG
Right flanking sequence: Indices 142902 -- 143401
AGGTTCGAAGAATAGATATATAGGTATTATTCTCTATAGAGTTATTCCAAAGTCTAAGAACATGT
TTTAATGATTAGTCAAGTTTCTAAGTGTAAGTAAGTATCTCAGAGCTTGGTAGGATAAAAACAGC
TCCATGTTAAGACATTTTAAAGGATTGAAATAGTAAAAGATTAACATGTATTAACATTTAAAAGA
TTAAAATACTCTGAATAAAACGTTTCGGAGTGAGAATGCTTTCATATTAATCCTTGATACTAAGG
AAGTTAATTGTTAAGTAGGAATATTGAGAAAAATTCCCACATATCAGACTGATTTGGTGTAGAAA
AAAAGGGACCCGGACAAATATATCTAGAAAATTTGTGGCCTTGCACCAACTGACTTTGTATATTT
ATATTCTTCTATTTCGTATAAGATATATCTATTTCCGATCCTCGAGTAAAAACATCTCGATTTTT
GCTGTTATCGGAATAGAGTAACAGGTAACTCTAATGGTGGTAGAC
Found at i:157100 original size:46 final size:45
Alignment explanation
Indices: 157025--157112 Score: 140
Period size: 46 Copynumber: 1.9 Consensus size: 45
157015 TATACTTGTG
*
157025 CAAAGCGTGCAAAAAGCACGGAATAAGCGAGCTAAACACGCTCTT
1 CAAAGCGTGCAAAAAGCACGAAATAAGCGAGCTAAACACGCTCTT
* *
157070 CAAAGGCGTGCAAAAAGCACGAAATGAGCGAGCTAAACCCGCT
1 CAAA-GCGTGCAAAAAGCACGAAATAAGCGAGCTAAACACGCT
157113 ATAATAAGAA
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
45 4 0.10
46 35 0.90
ACGTcount: A:0.40, C:0.25, G:0.24, T:0.11
Consensus pattern (45 bp):
CAAAGCGTGCAAAAAGCACGAAATAAGCGAGCTAAACACGCTCTT
Left flanking sequence: Indices 156525 -- 157024
ACCTCCTAGTGGATAAAGACAACCCGGAACGGAAGGTTGGGTTGGGAGGGGGTAGAGGGCAGCAC
ACTATTCTACCATCATTTAATGTCTCCTCTTTTTTTTTGTGGATGGAGACCGGAATTGAGAAGCA
ATGGATTCTTTATGAGTTAACTAGCAAGCAAGCAAGCTAGCAAGCTCGCTATACTTCCAGCAAAC
AAATATAGGTTGAATCCACCTTCGTTGACGAACGCCGCGTAGCGGCCGGCGTTCGAACTTCGTTA
CTCGGGGCAGCATAGTTTTCTTTTCTTGACTAAGGAATGGAGTTACCTTTTTTTATTCTCCTCAC
TAACTAAGGAAAGGAGTCACCCTTTTTTCCTGGTGTTCATTTGTGCCAAACGAATGAGACGTTTC
AACGAACGCAGTTTAACGGGTCATTTGTGTACGGGACATCGTAATATAAGAACCACGGAAATGTA
CAACTTTTCCCATCATATGTGCGAAAAAACGGATCTATACTTGTG
Right flanking sequence: Indices 157113 -- 157612
ATAATAAGAAAGGCCCGAGGGCCAGCTATTGCTAGCAAGCGCATGCTCGCACTTAAGCACTACAA
CCTTTTTTGGTTAAATATAGAGGATAGGTTTTTTACTTACGACACAGAACTGCAATTACCCCCCC
CCCAAAGCAGCAGCTTAAATTGCGGTAAATGAAAAACGAAAAAGCTTTGCCGGTCCATCATTTAC
GACCCTCATTGCAATACTTTAATAATGCACTTTTTTTGCGCAAAATCCAACTGGGGTGCCGAGTG
TAGACCAAAAAATTGTGCCTCTTGCGCACTTGGGAAGGCTCCGGGAAAACCCCGAGGGAACCTTG
GTTGGGGAAAGGGGGCAAAGAAGCCCACCAAGGCTTTGCCTACCCTGGAATTATCCGATCTAAAA
TCCATAAGGAGGAACTTTTTTTTTTATGAAAATATTCCGTTTCATAAACCATTCCTTCTCAAGAC
TTTCCAACAAAAAAAAACCATCCGACCCTAAACATCTTCCGATTT
Found at i:159168 original size:18 final size:18
Alignment explanation
Indices: 159145--159185 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
159135 TTCCCGATCT
159145 GCTGGGG-ATATCGAACCA
1 GCTGGGGCA-ATCGAACCA
*
159163 GCTGGGGCAATCGAACCT
1 GCTGGGGCAATCGAACCA
159181 GCTGG
1 GCTGG
159186 CTGGCCCCAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 20 0.95
19 1 0.05
ACGTcount: A:0.22, C:0.24, G:0.37, T:0.17
Consensus pattern (18 bp):
GCTGGGGCAATCGAACCA
Left flanking sequence: Indices 158645 -- 159144
TTTGTGCGTAAAGCCCACCAAGTGGACCCCACCCTTGTTGGGGTCCCCTCCCTTTTTTTAGGCAA
TTATTGCCCATTTGGCACGCCATACTTGGGTTCGGGTCTCTACTAGGTACTGCTTGCGCCCGCGT
ATACACGTGCTTACACATGGCGCACATGCGCTTACGCCTTGCGTACGTACATAAGCAGCTGGCCT
AGCTAAACAAGCTAGGGACGAACTCACTAACTAAGATTTGCCTGGGTAGTCAGCACTGGATATGA
AGCTTTCTAGCCGTCTTGGCTCCTCCAGGTCGTGGGATAGACAAGTTGTGGGACCAGCCGCGAAT
CTGCTGAACAGGACTATTTATTTTATCTTGAGCTTTTATTCTTGAGTCATCGGGGTGCCTGCCGA
CACACTGGTTTATTATGACCTTGCAACCTGAAAAGAGCAGGGTCCATAAACCCAATGCTGACGAG
TTCCATTCTTGGAATGGCGGTCAACTCTCCAGAGATTCCCGATCT
Right flanking sequence: Indices 159186 -- 159685
CTGGCCCCATACTTGATGAAACCCCACATTCCTTCGTGCGGATCGAACATAGTACCACATCCGAG
TGATCAGATAGGTCTGTGTCCTTTCAGATAGGTATGGATTGGGTTGTCCGGGTCTTGGTGGGGGA
AGAATTGAGACTTTCTGCTGCTGTCAATCAGACCTAGCTAGTTTGTCAATCAGACCAACCATGTC
ACAAAAACACCTCTCAAGATTGATTGTGACGAGATCTTCGCACCTTTTCCTGAGCTGGGAAAATA
GCCCGCCGAATAAACTCCTGCTTCTGAAGCATCTTATCCTTAAACTTAAGGATTGGCATGCCGCC
CGGAAGAAACACCTGTTTCTGAAGCATCTGATTTTCATTCATATTGACCGAAAGAGACATTCGTT
CCTTCACCTCATTTTTTTTTACTTATGGGGATACTTTAATTATGAACCAGAAACCATACACCATA
AACATAACTGATTACTTGCCCGAGGAAGAAAAGTATCCTCGAGGG
Found at i:165656 original size:21 final size:21
Alignment explanation
Indices: 165623--165662 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
165613 GGTAGCGCTC
* *
165623 AATCATCGGAGATGAATGATG
1 AATCATCAGAGATAAATGATG
*
165644 AATCATCATAGATAAATGA
1 AATCATCAGAGATAAATGA
165663 CCTTTGTTGT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.45, C:0.10, G:0.20, T:0.25
Consensus pattern (21 bp):
AATCATCAGAGATAAATGATG
Left flanking sequence: Indices 165123 -- 165622
CTTAGACTTCGTGAGTAAGTTCAAAGAAATAAGAATCTAGCCTCAGTATTGGTCAGAGATTGTTT
GCTACTAGACATCGACGCTTTCACTCGTTCACATATGATGGTTCTTCCAGGGGTCTTCTTCCCTA
GATCGTTCTGCGTCCAATTCTGGTGATGCCATTACCACATAAGGATCTAGGAGTCAGTGGGGCAT
TACCACCGGCAGGTTTCGTCCTGCATCTCTTCTGAGTTACAAGCGGTCAGCTTTTTTAACCTTTT
CGACCAGGTTTGGTGCGATAGAACCCGTGGGTTCCACCCCCGAATTATAGGTTACGGTTCGCACA
AGAAAGTAGCAAACTGATTACTAAATAGACACAAATAGGTGCAAATTCCATGAGATAACTACTTT
TTCTTGAGGAGAATAGTTCCAATGGTAGAACAATGGTCTCCAAAACCACAGGTTAAGGGTTCGAA
TCCCTTTTCTCCTGATTACATCAAATTTTGGTGGAGGTAGCGCTC
Right flanking sequence: Indices 165663 -- 166162
CCTTTGTTGTTTCGGGATAGATGGGGTATGGACCTCCGGCCTCATAGATAGCCTAATGATCCCTG
TCATCATTATCTACGATAAATCATTGCTTATTATCTCTCGTAGATAACTCATTGTTCTGCCCCTG
GGTGGGCAGAGCTGCGAGGCCGAGCCAATTCATGGTTCATTCATTATCTACGCTAATTTATTGTG
TCGCCCCAGCGTGGACTATGTTTGGTTTGATCCGGGGGTGGGCAGAGCTGCGAGGCCTTTCCAGA
TTTTCGTCACGAAAATCAAGATCTTCAATTCTTTCCCCGGGACGCTTCGCGCCTTGTTCATTAAA
ATACTAAGGGTTGGTTTGCTGACAGTTGATGGGTAGGGTATACATGGCTGTTAGATGATATCCCA
TTTTGCTTTTGTCACCAGAATAAAGCAGGTTTATTATGCTCACTGAGTTATTGAGAAAGCAGTTC
AACCCGGTCGGCAAAGGCTTTTTTGAGTGCCTTCGGCCCTCCGCT
Found at i:170619 original size:12 final size:12
Alignment explanation
Indices: 170602--170628 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
170592 CAGGCGTAGG
170602 AACAGAAGCATT
1 AACAGAAGCATT
170614 AACAGAAGCATT
1 AACAGAAGCATT
170626 AAC
1 AAC
170629 GGAACTGGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.52, C:0.19, G:0.15, T:0.15
Consensus pattern (12 bp):
AACAGAAGCATT
Left flanking sequence: Indices 170102 -- 170601
CACAGAATCAGCAACAGATTCAATCATTTATGAAACAATGATTCTGATTTCATCCTTGAGAGAAG
CATCGGCTGATTTACCCATCTCTGCAACGTTTCTGAAACTACCCTTGCCAGAATCAGGAGGAATA
TCATTAAAATCTGAAAACACTGATGAAGACCGCACAAGATTAAATTGTACGTTCTGAAATACTAT
TTTTATTTTATTAGGAACAGGTCTCTTTTTAATTATAAAAAAAATTATTAATGAATACATTAAAA
GTATGAAAGACACTATGGGGTGTCTAAAAAAAACTTTATTGTATTTAGAAAAAACACTGGTACAT
ATTTAATAATGAATGGTATAACTAATGAAGACAATTGAAGTAAAAAAGGAGGCAAAAATGGATCT
CCGTTGAAGTAATCCATATTTAACTTAGTTATATCACATGTCTGGTAAAGATCAGCCCAATCCCA
ATCGAGGATATTTGGTATCACTGTTGAAGGCTGCTCAGGCGTAGG
Right flanking sequence: Indices 170629 -- 171128
GGAACTGGAACCATTTCCGGAGTTAAAGCTTTCACTGAGCGGCCGAAAAGGCCTTTTAAGTGACA
TAGTTTCCTCGACTAAAGCTTTTTTCTCTCTGTTTTCAAAATCTGTCATTCCTGAGAAGTTCATA
AGAACCCATTTCAACGTGAGATTAAATAATCTTTTTATTAGGATATTGTACTGAAACAAAGGGTC
CGACGCTGTTTGTTGTAAGACCCTCTAAGATATTTCTAGCTTCATTACCACTAGCCACAATATTA
CCTAATACTTCTTCTTCTATAGAATTATAAGGATACATTTATCCCCTTTCAGAATAAGAAGTAGC
AATATCATTTAATAATCTAGTTTCGCAAATACTGGAACTCCCGGAAGGAATTATCTGAACCTGAA
CCTTGACCAAAAGAGTAAATGGCAAAGACCAATCCTGCGAACAACAAACTCCCCCACAATATGTG
ATTCTGATACCAAGGGGTCGCTTCATCTTCATGAGAATTTTTCTC
Found at i:171144 original size:18 final size:18
Alignment explanation
Indices: 171121--171155 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
171111 TTCATGAGAA
171121 TTTTTCTCAGGATTAACT
1 TTTTTCTCAGGATTAACT
171139 TTTTTCTCAGGATTAAC
1 TTTTTCTCAGGATTAAC
171156 CTCTGGGATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.23, C:0.17, G:0.11, T:0.49
Consensus pattern (18 bp):
TTTTTCTCAGGATTAACT
Left flanking sequence: Indices 170621 -- 171120
GCATTAACGGAACTGGAACCATTTCCGGAGTTAAAGCTTTCACTGAGCGGCCGAAAAGGCCTTTT
AAGTGACATAGTTTCCTCGACTAAAGCTTTTTTCTCTCTGTTTTCAAAATCTGTCATTCCTGAGA
AGTTCATAAGAACCCATTTCAACGTGAGATTAAATAATCTTTTTATTAGGATATTGTACTGAAAC
AAAGGGTCCGACGCTGTTTGTTGTAAGACCCTCTAAGATATTTCTAGCTTCATTACCACTAGCCA
CAATATTACCTAATACTTCTTCTTCTATAGAATTATAAGGATACATTTATCCCCTTTCAGAATAA
GAAGTAGCAATATCATTTAATAATCTAGTTTCGCAAATACTGGAACTCCCGGAAGGAATTATCTG
AACCTGAACCTTGACCAAAAGAGTAAATGGCAAAGACCAATCCTGCGAACAACAAACTCCCCCAC
AATATGTGATTCTGATACCAAGGGGTCGCTTCATCTTCATGAGAA
Right flanking sequence: Indices 171156 -- 171655
CTCTGGGATTAGATCTTGTGGACTTACCAAGTAGTTATAGGATTTTTTGAGATTATCACTACTAT
ATTTATAAATATAATATATAATACCATATATAATATAAGTAATAAATAGAATAATAATGAATGTC
AAAGTAATATTTTGGCAGAAGTGCTTTTGATAATAAAATGCTGAAAGTTGTTTCATAATTTTTTA
TTTTTTTTTTTTCACTTAAAAACATTGTTTTTGTTTTTTTTTAATCTAGTTTGATCATAACATAG
AAAGAATAATTATTACAGAAAGCTTAGACGCCGCCCTCGAATTGAAGATGGGTCAACCTCTCATC
CAAAAAGACTTTTTCTTACCATTTCCCAGAGATCCCGCACGCAAAAATGTAGTAGGGATAACCTC
GTGGTGGGGCGGGGCTCCGCCCCTTCAATGGACTAGGTCCAACGAGGGCGGAGCGGAAAAGTGCC
AATGCTTTCTTTGATAGCTGGAAGTTCTTCAAAGGTATGAAAAGC
Found at i:197960 original size:12 final size:12
Alignment explanation
Indices: 197924--197964 Score: 55
Period size: 12 Copynumber: 3.3 Consensus size: 12
197914 TACAGGTTTC
*
197924 ATATCAACTTGA
1 ATATCAAGTTGA
*
197936 ATCATCGAGTTGA
1 AT-ATCAAGTTGA
197949 ATATCAAGTTGA
1 ATATCAAGTTGA
197961 ATAT
1 ATAT
197965 GTCGAAAGAG
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
12 15 0.60
13 10 0.40
ACGTcount: A:0.39, C:0.12, G:0.15, T:0.34
Consensus pattern (12 bp):
ATATCAAGTTGA
Left flanking sequence: Indices 197424 -- 197923
CTCCGATGACAATGTTAGGGCTAGGCGCCCATTACTCGATCCTGTCAGGGGAAAGCTGCCGCCGC
CCCCGGCGAAATAAGACCATGGGAAGGCCGAAACAACTCTACAGCTGGTTGATCAGTGCCGAACC
GAGACCCATCTCGCCTTGCATTTGTATTTACGTTGGAATAATCCCAGAATAAGATTATGATGTTC
CTCCTTTATCGCTGAAGCCGGAGGCTAGCCGCCTTGTCTACCTTAGAAATAGGTTACCCTTGTCA
TCTCTGAAAATTACTCTTGATTATCACCAATCTTCCTGCTCTGCCGTCAGCAGTAGTGTGTCGCC
ATGGTCGTTGTAAAAATTTCAGAACCAATAATTCTAGACATGGAAATCAAAGTGTCATCAAAGAA
ACCTGATATGGAAACCAAAGTGATGACATAATGGAAATGATGTCCACCAAAATTGACTTCACTGT
TAGCTACAGCCAGAAATCTAAGCCTAAGATCATCCTACAGGTTTC
Right flanking sequence: Indices 197965 -- 198464
GTCGAAAGAGATGTGAGAAAACCACCTCAAAACTAAAAACTTCAAGCAGTCTTGCAACTACTGAT
TTGTGTTGGGGTGAAAGATTTGGCTTTCCCAAAGGTATGAAGAATAGATTGAAGTTACTGTTTGA
AGTCTCACTATCTTAAGAGATAACAAGTCTAGGTTATATACACAAACTAATGTCATGGTAGCGCT
TAACTTAGTATTTTGTTGAATTAATGCTACGTGAAATAGCACCACTTACGCCATGGTTATGAATC
AGGGCGGCCTACAGCTCCGAATTAGGCTACAGATAACAAATCCAAATTGGGCTACAGTTAACGAA
ATAAAAGCAAAGTAAGTAAGCCTAGGCCCGCCCGAAGCTACCAACTACCCAATTGGGCGGCTTGA
AGAAGCTTGGACAGTAAGCTAAACCCGAGCTCGGCCAGAAGAGCTCTCTATTGATAAGGCGGTGT
TTGTTCATTCTGTTATATTATGCTTTTTATTCAAGTAGGAGCTCT
Found at i:198530 original size:22 final size:22
Alignment explanation
Indices: 198502--198567 Score: 123
Period size: 22 Copynumber: 3.0 Consensus size: 22
198492 TACTAAAGTG
198502 CCTTTTGGACTAAAGGTAGTTC
1 CCTTTTGGACTAAAGGTAGTTC
198524 CCTTTTGGACTAAAGGTAGTTC
1 CCTTTTGGACTAAAGGTAGTTC
*
198546 CCTTTTGGACTAAAGGAAGTTC
1 CCTTTTGGACTAAAGGTAGTTC
198568 ACTGAAGTCA
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
22 43 1.00
ACGTcount: A:0.24, C:0.18, G:0.23, T:0.35
Consensus pattern (22 bp):
CCTTTTGGACTAAAGGTAGTTC
Left flanking sequence: Indices 198002 -- 198501
AACTTCAAGCAGTCTTGCAACTACTGATTTGTGTTGGGGTGAAAGATTTGGCTTTCCCAAAGGTA
TGAAGAATAGATTGAAGTTACTGTTTGAAGTCTCACTATCTTAAGAGATAACAAGTCTAGGTTAT
ATACACAAACTAATGTCATGGTAGCGCTTAACTTAGTATTTTGTTGAATTAATGCTACGTGAAAT
AGCACCACTTACGCCATGGTTATGAATCAGGGCGGCCTACAGCTCCGAATTAGGCTACAGATAAC
AAATCCAAATTGGGCTACAGTTAACGAAATAAAAGCAAAGTAAGTAAGCCTAGGCCCGCCCGAAG
CTACCAACTACCCAATTGGGCGGCTTGAAGAAGCTTGGACAGTAAGCTAAACCCGAGCTCGGCCA
GAAGAGCTCTCTATTGATAAGGCGGTGTTTGTTCATTCTGTTATATTATGCTTTTTATTCAAGTA
GGAGCTCTTCCTGTTTTGAAGTGATATCCTTACTGTACTAAAGTG
Right flanking sequence: Indices 198568 -- 199067
ACTGAAGTCACTTGACTTTTGGACTAAAGGAAGTTCCCTTAAGGGAAGGGCACCTCCTCATAAGT
ATAGAAAGCCCGGAATGGCACCTCCTTAAGTAAGACCCCAACACTTAGTATAGTTAGCCCCGCCG
CAGGGCATGCAGTAGCACATATATGTGTTTCCTTATATCTTCTGTGTTAGCCCCGCCGCAGGGCA
TGCAGTAGCACATATATGTGTTTCCTTATCTTCTGTGTTAGCCCCGCAGGGCATGTAGTAGCACA
TATCTCTCTTTTAAGAAATAAGTAAGTGCAAATATATCTCTGGTGTTTTGTTTGTAGTGAGCCCC
GCAGGGCATAGCAGTGAAAAAGCTCTCTGGGTTTAGCCCCGCAGGGCATAGCAGTGAAAAAGCTC
TCTGGGTTTAGCCCCGCAGGGCATAGCAGTGAAAATCTCTTATGAGAAATGAAAGTATAAAAAAT
TGATATAAGAAGATTGTAAAATAGTTAGCTGGGGTAAAGGACGGC
Found at i:198775 original size:58 final size:56
Alignment explanation
Indices: 198685--198830 Score: 244
Period size: 58 Copynumber: 2.6 Consensus size: 56
198675 ACTTAGTATA
198685 GTTAGCCCCGCCGCAGGGCATGCAGTAGCACATATATGTGTTTCCTTATATCTTCTGT
1 GTTAGCCCCGCCGCAGGGCATGCAGTAGCACATATATGTGTTTCC-T-TATCTTCTGT
198743 GTTAGCCCCGCCGCAGGGCATGCAGTAGCACATATATGTGTTTCCTTATCTTCTGT
1 GTTAGCCCCGCCGCAGGGCATGCAGTAGCACATATATGTGTTTCCTTATCTTCTGT
*
198799 GTTAG--CC-CCGCAGGGCATGTAGTAGCACATAT
1 GTTAGCCCCGCCGCAGGGCATGCAGTAGCACATAT
198831 CTCTCTTTTA
Statistics
Matches: 87, Mismatches: 1, Indels: 5
0.94 0.01 0.05
Matches are distributed among these distances:
53 24 0.28
54 2 0.02
56 15 0.17
57 1 0.01
58 45 0.52
ACGTcount: A:0.20, C:0.26, G:0.24, T:0.30
Consensus pattern (56 bp):
GTTAGCCCCGCCGCAGGGCATGCAGTAGCACATATATGTGTTTCCTTATCTTCTGT
Left flanking sequence: Indices 198185 -- 198684
GCTACGTGAAATAGCACCACTTACGCCATGGTTATGAATCAGGGCGGCCTACAGCTCCGAATTAG
GCTACAGATAACAAATCCAAATTGGGCTACAGTTAACGAAATAAAAGCAAAGTAAGTAAGCCTAG
GCCCGCCCGAAGCTACCAACTACCCAATTGGGCGGCTTGAAGAAGCTTGGACAGTAAGCTAAACC
CGAGCTCGGCCAGAAGAGCTCTCTATTGATAAGGCGGTGTTTGTTCATTCTGTTATATTATGCTT
TTTATTCAAGTAGGAGCTCTTCCTGTTTTGAAGTGATATCCTTACTGTACTAAAGTGCCTTTTGG
ACTAAAGGTAGTTCCCTTTTGGACTAAAGGTAGTTCCCTTTTGGACTAAAGGAAGTTCACTGAAG
TCACTTGACTTTTGGACTAAAGGAAGTTCCCTTAAGGGAAGGGCACCTCCTCATAAGTATAGAAA
GCCCGGAATGGCACCTCCTTAAGTAAGACCCCAACACTTAGTATA
Right flanking sequence: Indices 198831 -- 199330
CTCTCTTTTAAGAAATAAGTAAGTGCAAATATATCTCTGGTGTTTTGTTTGTAGTGAGCCCCGCA
GGGCATAGCAGTGAAAAAGCTCTCTGGGTTTAGCCCCGCAGGGCATAGCAGTGAAAAAGCTCTCT
GGGTTTAGCCCCGCAGGGCATAGCAGTGAAAATCTCTTATGAGAAATGAAAGTATAAAAAATTGA
TATAAGAAGATTGTAAAATAGTTAGCTGGGGTAAAGGACGGCTCTTGTTTTATCAATGTTATTTA
AGATCTTAGTAAGCTGTTGTTCGTCGATCTTACTTCTATTATATTGAACGGTGGTTTTGATACTG
CGGTGCCCGATGATATCTTTAACTACTTGAATGGGGGTAGTTTCAAGTAATTCAGTAATAATAGT
AGCTCTAAAACTATGAGTCCTTATGTGCTTATGGAGAAGTAATGAGGCTTTTTTGAGTACATGAT
TAAGTTCATCATCAAAAGAGGACCTATTGATGGGTTTGTCAAATT
Found at i:198942 original size:40 final size:40
Alignment explanation
Indices: 198887--198992 Score: 212
Period size: 40 Copynumber: 2.6 Consensus size: 40
198877 GTTTGTAGTG
198887 AGCCCCGCAGGGCATAGCAGTGAAAAAGCTCTCTGGGTTT
1 AGCCCCGCAGGGCATAGCAGTGAAAAAGCTCTCTGGGTTT
198927 AGCCCCGCAGGGCATAGCAGTGAAAAAGCTCTCTGGGTTT
1 AGCCCCGCAGGGCATAGCAGTGAAAAAGCTCTCTGGGTTT
198967 AGCCCCGCAGGGCATAGCAGTGAAAA
1 AGCCCCGCAGGGCATAGCAGTGAAAA
198993 TCTCTTATGA
Statistics
Matches: 66, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 66 1.00
ACGTcount: A:0.27, C:0.25, G:0.30, T:0.17
Consensus pattern (40 bp):
AGCCCCGCAGGGCATAGCAGTGAAAAAGCTCTCTGGGTTT
Left flanking sequence: Indices 198387 -- 198886
GGCCAGAAGAGCTCTCTATTGATAAGGCGGTGTTTGTTCATTCTGTTATATTATGCTTTTTATTC
AAGTAGGAGCTCTTCCTGTTTTGAAGTGATATCCTTACTGTACTAAAGTGCCTTTTGGACTAAAG
GTAGTTCCCTTTTGGACTAAAGGTAGTTCCCTTTTGGACTAAAGGAAGTTCACTGAAGTCACTTG
ACTTTTGGACTAAAGGAAGTTCCCTTAAGGGAAGGGCACCTCCTCATAAGTATAGAAAGCCCGGA
ATGGCACCTCCTTAAGTAAGACCCCAACACTTAGTATAGTTAGCCCCGCCGCAGGGCATGCAGTA
GCACATATATGTGTTTCCTTATATCTTCTGTGTTAGCCCCGCCGCAGGGCATGCAGTAGCACATA
TATGTGTTTCCTTATCTTCTGTGTTAGCCCCGCAGGGCATGTAGTAGCACATATCTCTCTTTTAA
GAAATAAGTAAGTGCAAATATATCTCTGGTGTTTTGTTTGTAGTG
Right flanking sequence: Indices 198993 -- 199492
TCTCTTATGAGAAATGAAAGTATAAAAAATTGATATAAGAAGATTGTAAAATAGTTAGCTGGGGT
AAAGGACGGCTCTTGTTTTATCAATGTTATTTAAGATCTTAGTAAGCTGTTGTTCGTCGATCTTA
CTTCTATTATATTGAACGGTGGTTTTGATACTGCGGTGCCCGATGATATCTTTAACTACTTGAAT
GGGGGTAGTTTCAAGTAATTCAGTAATAATAGTAGCTCTAAAACTATGAGTCCTTATGTGCTTAT
GGAGAAGTAATGAGGCTTTTTTGAGTACATGATTAAGTTCATCATCAAAAGAGGACCTATTGATG
GGTTTGTCAAATTGTACTTGTGTGGTAAAGAAAGGATGAATTCCTTCTTTATCCCTCATAAGTTG
AGTAAAGTCCGGTAAATGTTGTTGATTAAGCAACTTTCTCGCAACTGAGCTGAGAGCAAGGGCGT
GACGAGGATCTCCGCCTTTGTTCAAAGGTAAAAAGGTCTTGCCTT
Found at i:201609 original size:21 final size:20
Alignment explanation
Indices: 201576--201616 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 20
201566 TTTAAACATG
*
201576 CTCCGCGTGCGGCAGGGGCT
1 CTCCGCGGGCGGCAGGGGCT
*
201596 CTCCGGCGGGCGGCGGGGGCT
1 CTCC-GCGGGCGGCAGGGGCT
201617 TCGGGACTAC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.02, C:0.34, G:0.51, T:0.12
Consensus pattern (20 bp):
CTCCGCGGGCGGCAGGGGCT
Left flanking sequence: Indices 201076 -- 201575
GTTATTTTTTGCGGCCTTTTTCCCCGCAGCTAGGGCAAAGCAATAATTCGCACTGCGAGGCCCTC
TTCGCAATTCTCTAGAGAGGGTATCATAGTCAGATTTTTTTTGCATTGCTTGGAGCAAAAGACCT
TTGTTTTAGTTACAAAGCTGTCCGGTACAACCGGATGAATCTTAGGCCGTAAGTTACTTGCTTGT
TTCTTTCTAAGCTACCGTGCAACCCATAGATGCATCTAATACGGAGCTGGGTGCGTGCGCCATAT
TCATTTGCTCCAGGGGGGCTGGCCTCCTCGGGTTTAACCTCACCTGGGCCTGAGGCCCTCGATTT
GCCGGCGGCTGGAATCAGCGCTCGCCGCTTCATCCTGGCTTCTCAACGACTGGGGCAATCAGCAG
GTCAAAGTTTACTTTGTTCGCTTTAAGGGGGCCGCCCGGGAATTGAGGGGTGCACGTCCTCCGGC
TTTTTGGCCCCGGTTGGCCGGAGTTTGGCCGCGTCTTTAAACATG
Right flanking sequence: Indices 201617 -- 202116
TCGGGACTACCCTGCGGCGGGCGGCCGCCAGAAGATTCTTCTGCTGCAAATGTGCCGGACAGCGG
CAAGGCTTTATGGGAACCGGAACTAATCCTCAGTCCGGAGCAAAGATCTGGATCGGCCCGCTGGC
TGGTCGCGATAACATGGCGATGAATTTGCTTCCCCTCGAGGATAATCTAAAGTAAAGCCGAGAAT
CCCGATATTGAAGTGGGCGCACTTACAGCTGTGCAAGGCGGGATGAAGGGAGCAATTGCGATAGG
GGGGACTTGAACCCCCACGAGGAGTTGCCTCACTACCACCTCAAGGTAGCGCGTCTGCCATTACG
CCACTTCCGCACAAGTATGGCTTTGTTGCCGTTAGAGATTACACCGAAACCTTTCTTCGACCCTC
GGTACTGAGCTTTCCAGTTGTCGTCTCAGAAGTTACATTGCAGGTAGATTGCGATTCCCTTCTGG
CGCAAGCGTTCCAGCGCGACTTTACCCTGCGGCGATTGGTCAGGT
Found at i:205847 original size:32 final size:33
Alignment explanation
Indices: 205810--205875 Score: 98
Period size: 35 Copynumber: 2.0 Consensus size: 33
205800 TCGGGCACGT
*
205810 CGGGTAGTCCTGCC-GCACCATTGGGGTCGGGC
1 CGGGTAGTCCTGCCAGCACCATCGGGGTCGGGC
205842 CGGGTAGTCCTGCCAATGCACCATCGGGGTCGGG
1 CGGGTAGTCCTGCC-A-GCACCATCGGGGTCGGG
205876 ATTGATTGCC
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
32 14 0.47
35 16 0.53
ACGTcount: A:0.12, C:0.30, G:0.39, T:0.18
Consensus pattern (33 bp):
CGGGTAGTCCTGCCAGCACCATCGGGGTCGGGC
Left flanking sequence: Indices 205310 -- 205809
CAGGTGGTCTGATTTACCGGCGTTCGTCGGGCTGCGGCAGCCATCCAGAAGATAGCCGCCACTAG
CAATATTGTATGTTCGTGCTACAGTGTCCAACCGCATGGAATAGCCAGCCAGTAGGGGTAGTAAG
CCTAAGGCCGAGAGCAGGGAAAAGGCCCGGATACGCAAGCCGGGCTCGCTGCGCTCGCCCCTCGG
CTGGTTGCTGCAATACCCTTCTCTGGTACGCCGTTAGTTACCAAAGGCTGCTACAACTAAAAGCT
TGCAAAGACACTACTTCCATCAAAAAAGAGCTAAACGATCTAAGAAAGCGTCATGATTCTTACAT
TTAAAATTCCAACATTTGGTGGAAGAGCATTGCAGAGAAAGAGGCAAATTGGATTTAGCCAGGGA
TCTTATACAATAGCTCAACGCTGGATCTGGTGATGCTCTTCCAAGGTCCGATACTAGGGATGGGA
GCAGCAGCATAAGCTTGTCCGTATCGTCGGAGGGTTCGGGCACGT
Right flanking sequence: Indices 205876 -- 206375
ATTGATTGCCGGGTAGTCCTGCCAATGCACCTTCGAATTGTTTGGCTTACGAGAATGTCAATTCT
TGGGTTGATTTCCTTAGCGGGCTGGCTTTTTATAACTCCTAAGCCCAGAAAAAAAAAATAAGCAT
CCGCTCGCCCAATGCGTCGCCTAATGCGCGGCTGCCCCGCTCGTTAGGAACTCGTTATTCGGTTT
TGTTTATTATATTCATATTTCTTCTTTCTCGTTCCCGGGTGCTTGCTTAAGGGGGAGACCTTGGT
CTTAGCTAACCTGATCACCACTGGAGGGGCATATACTACCGTTTATTCGTTTCATATTGTTTTAT
TGCCGGACAACCCGGAATGGTGAGAAGCAAATTGCTTTATGGGGTTTTTGTTTCTGGTCCTTAAT
TAAATAGGGTCGATTCCTAGCAGTTCCGCCATATGCTGTCAGGCGGAGGCCAAACACGATGGCAA
GACAGCTGCAACGAGTTACCACTGCAACTGTTGAGCAAATTGCTG
Found at i:209620 original size:81 final size:81
Alignment explanation
Indices: 209476--209625 Score: 230
Period size: 81 Copynumber: 1.9 Consensus size: 81
209466 AAGATACTCG
* *
209476 CTATCGGATTCGAACCGATAACCCATAGGAACAGATTTTGAGACTGCCGTGTCTACCCCTTTCAC
1 CTATCGGATTCGAACCGATAACCCATAGGAACAGATTTTAAGACTGCCGTGTCTACCACTTTCAC
209541 CAAGCGAGTATGCTCA
66 CAAGCGAGTATGCTCA
* * * *
209557 CTATCGGACTT-GAACCGATAACCCATAGGAACAGATTTTAAGTCTGTCGTGTTTACCATTTTCA
1 CTATCGGA-TTCGAACCGATAACCCATAGGAACAGATTTTAAGACTGCCGTGTCTACCACTTTCA
209621 CCAAG
65 CCAAG
209626 TGAGCTTGGG
Statistics
Matches: 62, Mismatches: 6, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
81 60 0.97
82 2 0.03
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.27
Consensus pattern (81 bp):
CTATCGGATTCGAACCGATAACCCATAGGAACAGATTTTAAGACTGCCGTGTCTACCACTTTCAC
CAAGCGAGTATGCTCA
Left flanking sequence: Indices 208976 -- 209475
TTACTTAGTCACCATGGGATAACCCAGTAACTGGGGAGCAAAAAAAGAGGCGAAGCACTTGATGG
GCAGCGCTGGGGTACGTAGTTTATGGCGAAGCTCAGGGAATAGAATGTGTTCTCTCCATCAAGCC
GCGAACCTGCTGGCTGCTCGTCAGGTGCGTAGCACTTCGTTGGCGAGCGAACGAAGGCCGAATAA
TAATAATAAGTAGGTGACACGAACGTTCTCCGAACGAAGGGAGTGGAGAACGAAGCTTGCTTCTC
CGAACGAAGTTTGCTTCGCTCACTTCGTCCAGAGAACTTGGCTGGCAAAACGAGCAAAGGCGCGG
AGATAGGAAAGCAATGGCGCGGAGCGCTTCGAAGGTTGTCAAGATGCAAGCTAATGGATGATGTG
TTTTTGGCGAATAACGGGATTCGAACCCGTGTTTTCAAATTCACAATCTGACACTTTCACCTGTT
AAGTTATACTCGCCCTTATTTCCAATCCAAAAACTAAGATACTCG
Right flanking sequence: Indices 209626 -- 210125
TGAGCTTGGGGAAGCAAATGGCAGAGCGGGGAGTTCCGCCCGCCGCCCTATCCCCGCATTTTCTT
CTCCTCATCCTGGCTTCGCCTAGCCAGGCGGCTTACTATGGCTTGGCCATACCCGCGTGGCCTCG
CCCGATTTTACTGGTGGGAATGTTTGTTGAGGCGACCAAGCGTTCCATCGTATTAGTGCACCCTA
CGCAGGCTGCGCCCGTAGAGCGCTCCTTCGTTTACAAACCTTGTCAACAACCTTCTTTTTTTTTG
TTATATTTTTCTTTTTTATTACATACAAGTAGCCAGCGGCAAGAGTGTGCTTGGTGCAAACAAAG
CCATTTTACCAAGCAAGATCTCTGAAACTAAGATTCTTTCTTTTTCTTTTTCTTTTCTTTATATT
TTCCACTATTCATACTCAATGAATTTTCCATTTCTTCATGTTTTTGCTAGTAATAGAATGATGAT
AAATCAAAATTATTGTGACCTCTATTTATTATATTGTGGTGCAGA
Found at i:211620 original size:18 final size:18
Alignment explanation
Indices: 211597--211633 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
211587 GTGGTAGGGG
*
211597 ACCCTTGAAATAAAAGGT
1 ACCCTTAAAATAAAAGGT
211615 ACCCTTAAAATAAAAGGT
1 ACCCTTAAAATAAAAGGT
211633 A
1 A
211634 AACCTTTTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.49, C:0.16, G:0.14, T:0.22
Consensus pattern (18 bp):
ACCCTTAAAATAAAAGGT
Left flanking sequence: Indices 211097 -- 211596
TCAATTTCCTAATGGAAAAGCTTTTTTTAATAAATAGAACCTCAAACCAGGATTGAAGATCTTGT
GGGCGAGGACAGTGCTTCATCAAATGGGACTGGGATCGGAAATAGTCGTGATCTAATAATATCAT
CAGCTTTCGAAAGCAGGAGTGCTTGGGATGTAGTATTCCGCGCGCCAGCTAACTCGGTTGGTCGA
GTTTTTGAAGTCCGGTAAATTAAATGTTCTAACTTTACCAAACAAGCATCCCTCCACGACTAGAC
TATAGTTTTCTTTTTTTTCGGTAAAACGCGGATACCGTGTTTGAATTATGATCGCTTTTATTTAT
GCAATCAGGGGGCCACTATCCAAGCCTAAGTACCGTGATGAGGGAAAGGTGAAAAGAACCATCTT
CCTTCCCTTCCCCCCTACGGTCGAGTGCTCCTTTAAAGCCGCCCTTCGGTCGAGGCCCCCTTCCT
TGGGGGGGGGGGAAGGCTTGGGAAGGTTGATGAAGGTGGTAGGGG
Right flanking sequence: Indices 211634 -- 212133
AACCTTTTTCGGGTTAGTCTGAAACTTGACAAACCTGTTTTTAAATTAGTAGGGGCCAGCCCTCA
TTATCTTCCTACTCCTACGGGCGAGTCGAGTCGAGCGGTGAAAGTTACTTCACCTCGCACACTAG
GTCTAAGCCACACTCCTTAGTCCTTAACGTCGCTTAGTCCAAGTCTGTGTACCGATGACTTTTTT
TTCTGGGAAGAAAACCGTCGTTCCTCGATGATATATTTGTCTACCAACTAAGAAAAAATTGAATC
TCCTGGCTGAAAAAAAGGAAATAACCTAAAAATTACTTCGATGGTTTGTCCACTGACCGACTTTG
ATTTAATTTTTCCTCCTTTTCGCCAATACTGATGTTTTTCCTCCCCGAAGCGTTACTAATCCTTT
TGCATGCATGGGTGAGCAAATCCTCCAGCTAAGGTGGTTTCCTGCCGAGTCCTGCCGAGGAGGCT
TCCTCTCGAAGTATTGTTGAGGCGTCCTAGCAAAGTACTGTCGAG
Found at i:214485 original size:9 final size:9
Alignment explanation
Indices: 214471--214500 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
214461 GCTGTTATTT
214471 TTTTTTTTC
1 TTTTTTTTC
214480 TTTTTTTT-
1 TTTTTTTTC
214488 TTTTTTTTC
1 TTTTTTTTC
214497 TTTT
1 TTTT
214501 CGTTTTCAAC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
8 8 0.40
9 12 0.60
ACGTcount: A:0.00, C:0.07, G:0.00, T:0.93
Consensus pattern (9 bp):
TTTTTTTTC
Left flanking sequence: Indices 213971 -- 214470
TTCAATATTTAAAACGCGTATATAAATAACACGAAATATTCAACATTTATCGACCAGGAAAACGC
TTCGCTTTTTCATTTCTTCGACCATGGAAACGCGCGAAAAGCGTTTTCATCTCTTCGATTTTTTG
TTTGCAAAGCGAGCAAGGGGGCCGGCCCGTGTACTTTTCAAGTAGGACTGGAACACATGTAACTA
GCGGTGAAGGTCGGCTCACGAACTATTTATTTGCTAGTTTAATGTTGTATCTTGCGGCCACCAAG
GAGCTATTCGTTTCGTCAAGCCAGAGCGTTCCGTCCTTTACCCGCGATGACTTGCTTTACTGTAA
CACAAAAATCTGAAGAAGATTTTTTACGAAAGAAAAGGCAACATCCTTTCCCAGTTATCCGGTTT
ACCGTAGCTTTTTTTGACAATTCCGATTACTTCTTTATCTAAGTTACCGTAGAAAGCGAAGTCCG
ATACTTCGTTCCCTAATCTTCCGCCTTGCGCTTGAGCTGTTATTT
Right flanking sequence: Indices 214501 -- 215000
CGTTTTCAACAAGTCGATTCTCCGTCCGGGTATTCTTGGTAGTATCCGAAGTGTTGTCGCCTAAA
AATTGTAGCCTAACGATGGCTGCTGCATTACCCTATGGAATCTAAGGATCTAAGATGGAAAAGAA
AATTATTTCACCGCCTTGTTGCCAGTAGTGAATACTCTTATCAGAGCTGCTCCGTTAAATAATGG
CTTTGCTTTCCCCCCCCCCCCCCCACCCTTGCCCAGAAGAGGACAAGGAAGCAACCGTCTTGCAG
TCGTTATGCAGCTGCTGCATAAACTAGATAATAGCTTTCTTCGAACCTCTCGTCTGTCCCTTCCT
TAGTCCTTCCTGTCTGTCCTTTCCTCCGTCCTTCCCGTCTGTCCCTTCCTTAGTCCTTCCTGTCC
GTCCTTTCCCTAGTTAGTGTCCTGGTGGTCCTATCCTAACCTGTCTGAAGTTTGAAGTTCAGTCA
GATAGGCCTTGCATTTATCTAGAGTCTTCCGTGCTTTTATGTTCA
Found at i:214485 original size:11 final size:11
Alignment explanation
Indices: 214469--214506 Score: 51
Period size: 11 Copynumber: 3.4 Consensus size: 11
214459 GAGCTGTTAT
214469 TTTTTTTTTTC
1 TTTTTTTTTTC
214480 TTTTTTTTTT-
1 TTTTTTTTTTC
214490 TTTTTTCTTTTC
1 TTTTTT-TTTTC
214502 GTTTT
1 -TTTT
214507 CAACAAGTCG
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
10 6 0.25
11 14 0.58
13 4 0.17
ACGTcount: A:0.00, C:0.08, G:0.03, T:0.89
Consensus pattern (11 bp):
TTTTTTTTTTC
Left flanking sequence: Indices 213969 -- 214468
TTTTCAATATTTAAAACGCGTATATAAATAACACGAAATATTCAACATTTATCGACCAGGAAAAC
GCTTCGCTTTTTCATTTCTTCGACCATGGAAACGCGCGAAAAGCGTTTTCATCTCTTCGATTTTT
TGTTTGCAAAGCGAGCAAGGGGGCCGGCCCGTGTACTTTTCAAGTAGGACTGGAACACATGTAAC
TAGCGGTGAAGGTCGGCTCACGAACTATTTATTTGCTAGTTTAATGTTGTATCTTGCGGCCACCA
AGGAGCTATTCGTTTCGTCAAGCCAGAGCGTTCCGTCCTTTACCCGCGATGACTTGCTTTACTGT
AACACAAAAATCTGAAGAAGATTTTTTACGAAAGAAAAGGCAACATCCTTTCCCAGTTATCCGGT
TTACCGTAGCTTTTTTTGACAATTCCGATTACTTCTTTATCTAAGTTACCGTAGAAAGCGAAGTC
CGATACTTCGTTCCCTAATCTTCCGCCTTGCGCTTGAGCTGTTAT
Right flanking sequence: Indices 214507 -- 215006
CAACAAGTCGATTCTCCGTCCGGGTATTCTTGGTAGTATCCGAAGTGTTGTCGCCTAAAAATTGT
AGCCTAACGATGGCTGCTGCATTACCCTATGGAATCTAAGGATCTAAGATGGAAAAGAAAATTAT
TTCACCGCCTTGTTGCCAGTAGTGAATACTCTTATCAGAGCTGCTCCGTTAAATAATGGCTTTGC
TTTCCCCCCCCCCCCCCCACCCTTGCCCAGAAGAGGACAAGGAAGCAACCGTCTTGCAGTCGTTA
TGCAGCTGCTGCATAAACTAGATAATAGCTTTCTTCGAACCTCTCGTCTGTCCCTTCCTTAGTCC
TTCCTGTCTGTCCTTTCCTCCGTCCTTCCCGTCTGTCCCTTCCTTAGTCCTTCCTGTCCGTCCTT
TCCCTAGTTAGTGTCCTGGTGGTCCTATCCTAACCTGTCTGAAGTTTGAAGTTCAGTCAGATAGG
CCTTGCATTTATCTAGAGTCTTCCGTGCTTTTATGTTCAGATGCA
Found at i:214490 original size:17 final size:17
Alignment explanation
Indices: 214468--214500 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
214458 TGAGCTGTTA
214468 TTTTTTTTTTTCTTTTT
1 TTTTTTTTTTTCTTTTT
214485 TTTTTTTTTTTCTTTT
1 TTTTTTTTTTTCTTTT
214501 CGTTTTCAAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.00, C:0.06, G:0.00, T:0.94
Consensus pattern (17 bp):
TTTTTTTTTTTCTTTTT
Left flanking sequence: Indices 213968 -- 214467
CTTTTCAATATTTAAAACGCGTATATAAATAACACGAAATATTCAACATTTATCGACCAGGAAAA
CGCTTCGCTTTTTCATTTCTTCGACCATGGAAACGCGCGAAAAGCGTTTTCATCTCTTCGATTTT
TTGTTTGCAAAGCGAGCAAGGGGGCCGGCCCGTGTACTTTTCAAGTAGGACTGGAACACATGTAA
CTAGCGGTGAAGGTCGGCTCACGAACTATTTATTTGCTAGTTTAATGTTGTATCTTGCGGCCACC
AAGGAGCTATTCGTTTCGTCAAGCCAGAGCGTTCCGTCCTTTACCCGCGATGACTTGCTTTACTG
TAACACAAAAATCTGAAGAAGATTTTTTACGAAAGAAAAGGCAACATCCTTTCCCAGTTATCCGG
TTTACCGTAGCTTTTTTTGACAATTCCGATTACTTCTTTATCTAAGTTACCGTAGAAAGCGAAGT
CCGATACTTCGTTCCCTAATCTTCCGCCTTGCGCTTGAGCTGTTA
Right flanking sequence: Indices 214501 -- 215000
CGTTTTCAACAAGTCGATTCTCCGTCCGGGTATTCTTGGTAGTATCCGAAGTGTTGTCGCCTAAA
AATTGTAGCCTAACGATGGCTGCTGCATTACCCTATGGAATCTAAGGATCTAAGATGGAAAAGAA
AATTATTTCACCGCCTTGTTGCCAGTAGTGAATACTCTTATCAGAGCTGCTCCGTTAAATAATGG
CTTTGCTTTCCCCCCCCCCCCCCCACCCTTGCCCAGAAGAGGACAAGGAAGCAACCGTCTTGCAG
TCGTTATGCAGCTGCTGCATAAACTAGATAATAGCTTTCTTCGAACCTCTCGTCTGTCCCTTCCT
TAGTCCTTCCTGTCTGTCCTTTCCTCCGTCCTTCCCGTCTGTCCCTTCCTTAGTCCTTCCTGTCC
GTCCTTTCCCTAGTTAGTGTCCTGGTGGTCCTATCCTAACCTGTCTGAAGTTTGAAGTTCAGTCA
GATAGGCCTTGCATTTATCTAGAGTCTTCCGTGCTTTTATGTTCA
Found at i:214506 original size:17 final size:17
Alignment explanation
Indices: 214469--214506 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
214459 GAGCTGTTAT
**
214469 TTTTTTTTTTCTTTTTT
1 TTTTTTTTTTCTTTTCG
214486 TTTTTTTTTTCTTTTCG
1 TTTTTTTTTTCTTTTCG
214503 TTTT
1 TTTT
214507 CAACAAGTCG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.00, C:0.08, G:0.03, T:0.89
Consensus pattern (17 bp):
TTTTTTTTTTCTTTTCG
Left flanking sequence: Indices 213969 -- 214468
TTTTCAATATTTAAAACGCGTATATAAATAACACGAAATATTCAACATTTATCGACCAGGAAAAC
GCTTCGCTTTTTCATTTCTTCGACCATGGAAACGCGCGAAAAGCGTTTTCATCTCTTCGATTTTT
TGTTTGCAAAGCGAGCAAGGGGGCCGGCCCGTGTACTTTTCAAGTAGGACTGGAACACATGTAAC
TAGCGGTGAAGGTCGGCTCACGAACTATTTATTTGCTAGTTTAATGTTGTATCTTGCGGCCACCA
AGGAGCTATTCGTTTCGTCAAGCCAGAGCGTTCCGTCCTTTACCCGCGATGACTTGCTTTACTGT
AACACAAAAATCTGAAGAAGATTTTTTACGAAAGAAAAGGCAACATCCTTTCCCAGTTATCCGGT
TTACCGTAGCTTTTTTTGACAATTCCGATTACTTCTTTATCTAAGTTACCGTAGAAAGCGAAGTC
CGATACTTCGTTCCCTAATCTTCCGCCTTGCGCTTGAGCTGTTAT
Right flanking sequence: Indices 214507 -- 215006
CAACAAGTCGATTCTCCGTCCGGGTATTCTTGGTAGTATCCGAAGTGTTGTCGCCTAAAAATTGT
AGCCTAACGATGGCTGCTGCATTACCCTATGGAATCTAAGGATCTAAGATGGAAAAGAAAATTAT
TTCACCGCCTTGTTGCCAGTAGTGAATACTCTTATCAGAGCTGCTCCGTTAAATAATGGCTTTGC
TTTCCCCCCCCCCCCCCCACCCTTGCCCAGAAGAGGACAAGGAAGCAACCGTCTTGCAGTCGTTA
TGCAGCTGCTGCATAAACTAGATAATAGCTTTCTTCGAACCTCTCGTCTGTCCCTTCCTTAGTCC
TTCCTGTCTGTCCTTTCCTCCGTCCTTCCCGTCTGTCCCTTCCTTAGTCCTTCCTGTCCGTCCTT
TCCCTAGTTAGTGTCCTGGTGGTCCTATCCTAACCTGTCTGAAGTTTGAAGTTCAGTCAGATAGG
CCTTGCATTTATCTAGAGTCTTCCGTGCTTTTATGTTCAGATGCA
Found at i:214849 original size:25 final size:25
Alignment explanation
Indices: 214812--214904 Score: 123
Period size: 25 Copynumber: 3.7 Consensus size: 25
214802 CGAACCTCTC
214812 GTCTGTCCCTTCCTTAGTCCTTCCT
1 GTCTGTCCCTTCCTTAGTCCTTCCT
* ** *
214837 GTCTGTCCTTTCCTCCGTCCTTCCC
1 GTCTGTCCCTTCCTTAGTCCTTCCT
214862 GTCTGTCCCTTCCTTAGTCCTTCCT
1 GTCTGTCCCTTCCTTAGTCCTTCCT
* * *
214887 GTCCGTCCTTTCCCTAGT
1 GTCTGTCCCTTCCTTAGT
214905 TAGTGTCCTG
Statistics
Matches: 57, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 57 1.00
ACGTcount: A:0.03, C:0.42, G:0.13, T:0.42
Consensus pattern (25 bp):
GTCTGTCCCTTCCTTAGTCCTTCCT
Left flanking sequence: Indices 214312 -- 214811
AGATTTTTTACGAAAGAAAAGGCAACATCCTTTCCCAGTTATCCGGTTTACCGTAGCTTTTTTTG
ACAATTCCGATTACTTCTTTATCTAAGTTACCGTAGAAAGCGAAGTCCGATACTTCGTTCCCTAA
TCTTCCGCCTTGCGCTTGAGCTGTTATTTTTTTTTTTCTTTTTTTTTTTTTTTTCTTTTCGTTTT
CAACAAGTCGATTCTCCGTCCGGGTATTCTTGGTAGTATCCGAAGTGTTGTCGCCTAAAAATTGT
AGCCTAACGATGGCTGCTGCATTACCCTATGGAATCTAAGGATCTAAGATGGAAAAGAAAATTAT
TTCACCGCCTTGTTGCCAGTAGTGAATACTCTTATCAGAGCTGCTCCGTTAAATAATGGCTTTGC
TTTCCCCCCCCCCCCCCCACCCTTGCCCAGAAGAGGACAAGGAAGCAACCGTCTTGCAGTCGTTA
TGCAGCTGCTGCATAAACTAGATAATAGCTTTCTTCGAACCTCTC
Right flanking sequence: Indices 214905 -- 215404
TAGTGTCCTGGTGGTCCTATCCTAACCTGTCTGAAGTTTGAAGTTCAGTCAGATAGGCCTTGCAT
TTATCTAGAGTCTTCCGTGCTTTTATGTTCAGATGCATTTTATGAGAGAGCTGTCGAAAAGTCAA
ATTCGGATTTATTTCGAGCCAATATTCGATCGCCTGAAAGTAGCGAGTCAAATTGCCGGATTCGA
TAAAGCCTTCCGAGGCAAAAGTAAAAAACTCCTGTTTGTCGAAGCAATACGAATTTGGCTAGCCA
ATTCACAACATGGAAAATAAGATTGAGGCGGAAGGAAAGAAGATCCTTCCTCTTAGAATCAGTGT
TGCTGTTATTGTTTTATGTGTTCTTACTGTAAGCAAGAAGCTTCGCCGATCTTTTCCTTCCACGA
TGCTTATCGCGGATTCGCGCCTCAAAATTATCAAGTTAAATTACATTAACTTCCTTTAAGTTATC
AGTCGCCCATTGAAAGATAGATGTAAGGAACAATTCTTCCGCCGG
Found at i:218094 original size:15 final size:15
Alignment explanation
Indices: 218074--218118 Score: 90
Period size: 15 Copynumber: 3.0 Consensus size: 15
218064 CAACTACATG
218074 TATTTTAATTTAATA
1 TATTTTAATTTAATA
218089 TATTTTAATTTAATA
1 TATTTTAATTTAATA
218104 TATTTTAATTTAATA
1 TATTTTAATTTAATA
218119 GGTTGAGTTG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 30 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (15 bp):
TATTTTAATTTAATA
Left flanking sequence: Indices 217574 -- 218073
TTGCTCAAAAAGCCATTGAGCGGAACGCTCTCTGACTCCTCCGTCCTTTTTTATTTTTGGCGGAC
GCAGAAAATTATCATGTATTTGTGGTTAAACACAAAATTACTCTGGACCTACTGAGAAGTTTAAG
GCAGCTCCTCCATTGCTGCAGCCTCATATCCTTACAATAACTTGCGTTTCAAGCCTTAGTGCAGT
TTAGACAAAGCATTTTGAATTATATGGTATGGTTCCAGGTATAGTTCCCAGCCATCAAACACAAT
GAAGTCTTGTCTTAGCCTATAGTAGACTATAATAGTTAACATTGCAATTATTTTGGCTAATAATA
TTCCTGGAGAAAGATCCTCTATATCAACATCCTCCGTACCCCTGGATATACGAAATAATATTACC
AGTTTAAACCCCCCTAAAACTCTCGAAATAAGGGAAATACTCAACATGTGCTCTGTACCAAGACA
ATAATACAGTAAAAACTGAAATAGCTTCGAATTGACAACTACATG
Right flanking sequence: Indices 218119 -- 218618
GGTTGAGTTGTCACTGTATTACTAAGAAGCAATCCGAAAAAAAAAGCTGGAATAATAACGAGGGA
AATTCTAGAAAAAAAAAGGATCGAAAATTATTTGTAAGACGTCAAAAATTAAACTAAAAATGGGC
ATAATTAAGAAACAAAACGGCTAATTAATTTCACGGTAGGTGTTCTTTTTCTTTCAAATAGTAAT
AAATTTTGAAAATATTTTAAATAGAAAACAAACCTGAGTCTAATTTATGTGGTGCCCTTTTCCCA
TGGCTATTAGCCCCAAACGCCTGCTGCTTCACAGCGGACTCAAAAAAAAGCAGCGGGCAGCTCAC
AGCGAACTCGATGCAGCTGGCAGCATAACATACGTAACATAAGGGTATGTTATCACCAAAGGCAG
ATAACATACCAATTCAGAGCATTTAGCGCTGTGTTGGCTCTACAACACGTAGTAGCTAAACCTCT
ACGATGATGAGTAAGCTTTTTTTCTTTCTTGCTTCTTCTCGCTTC
Found at i:224908 original size:64 final size:64
Alignment explanation
Indices: 224807--224999 Score: 273
Period size: 64 Copynumber: 3.0 Consensus size: 64
224797 GACTTGCACG
224807 TACGGTTCTTAGCGGGGGTACTGACCGAAAGGTCGGCGCTTTTACCCGACTCCTCCGATCCACA
1 TACGGTTCTTAGCGGGGGTACTGACCGAAAGGTCGGCGCTTTTACCCGACTCCTCCGATCCACA
*
224871 TACGGGTCTTAGCGGGGGTACTGACCGAAAGGTCGGCGCTTTTACCCGACTCCTCCGATCCACA
1 TACGGTTCTTAGCGGGGGTACTGACCGAAAGGTCGGCGCTTTTACCCGACTCCTCCGATCCACA
* ** * * * *
224935 TATGGTTCTTATTATTGGGGGTACTGACCGAAGGGTCGGCGC--CTACCCGATTCCTTCGATCCA
1 TACGGTTC---TTAGCGGGGGTACTGACCGAAAGGTCGGCGCTTTTACCCGACTCCTCCGATCCA
224998 CA
63 CA
225000 ACCAAAGTTC
Statistics
Matches: 117, Mismatches: 9, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
64 69 0.59
65 20 0.17
67 28 0.24
ACGTcount: A:0.19, C:0.30, G:0.27, T:0.25
Consensus pattern (64 bp):
TACGGTTCTTAGCGGGGGTACTGACCGAAAGGTCGGCGCTTTTACCCGACTCCTCCGATCCACA
Left flanking sequence: Indices 224307 -- 224806
AAGGTCCTAGCAAATAGGGAAACTCACTTAGAAGAAGGATAAATTAACTCCTCCGGTGAGGTCGG
ATGGCACCACCACTGTCGAATAACACCTAGCAAAGTTGATCCGCTGGTAATAGATCGCCAAAAGC
AAATGGAAAAAAGTCGCGAACAAAAAAGAAAGCCCTGAGCTTTGCCGAAGCTCAGCTTTGACAAA
GCCTATGGAGACGGTGGATTTTGTTGCGGGCGGCCCCCGGCCGGAGGTCATGGCACGGAAGCCAG
GTAAACTTGGGTAAGTGGCTGCGTTGCTAGAGTTGACATCAGCAGAGGAATCGAGGGGAACTCCA
TAGTACTACTGATGACGCAGCCTGACACTCTATTAAATAGAAAAAGGTCCTTCAAGCAGTACTGA
ATGACGTCAGCACATTTTCATCTACCAAAAAAATGTTGATATGCACAAACTTATCATAACTTTAA
CCATTTAACGGGTTGGCGTAAGCCATATGCGGGGAGACTTGCACG
Right flanking sequence: Indices 225000 -- 225499
ACCAAAGTTCAAAGATTATGGCGAATCATAGAAAAAAGAATAAGAAAAATAAGAAGGGAGGCTGA
AGAAGATGAGAGTACACTTATGATGAACCCTTTCTCTCTATGATGATGGGTATGCACGATGTTAT
AGTTACGAGCCTTAAGGATCTTCATGTGACCCCTTTTGAACCCTTTAGAGGTTCAACAAAACAAA
CTAATTGTTGTGGACGTAGAGCGTTCGGGAACATATCGAGACTGAAGCAATTATTAACATACGGT
GAGCCGGGACGCAAGAAACATGTTCGAGGCAACCCGTTTTCGTTGAGGGTCTAGTACTTATTTGG
CTAGGAACCCTTCCAATGGTACCTGATTCATCCACCGGATTTTCACGTTGTATTTAGTTTTCCGC
TTCGAAAGTTCCCGAAGGGTACTAAATATAATATCATATAGGATCAAATAACGTGTTTGAGGGAG
CTGAAAGGCGGCCCACTTGGTTCGCTTTGCGAACCAAGGCCGAGG
Found at i:226263 original size:27 final size:27
Alignment explanation
Indices: 226224--226284 Score: 106
Period size: 27 Copynumber: 2.3 Consensus size: 27
226214 GTATACTAAT
226224 TATTTA-TATCTTTCTGCTTCTACAAA
1 TATTTATTATCTTTCTGCTTCTACAAA
226250 TATTTATTATCTTTCTGCTTCTACAAA
1 TATTTATTATCTTTCTGCTTCTACAAA
*
226277 TATCTATT
1 TATTTATT
226285 TATTCCATCT
Statistics
Matches: 33, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
26 6 0.18
27 27 0.82
ACGTcount: A:0.26, C:0.18, G:0.03, T:0.52
Consensus pattern (27 bp):
TATTTATTATCTTTCTGCTTCTACAAA
Left flanking sequence: Indices 225724 -- 226223
AAGCTTAATTCATCAGCTAGGGTCGCCAATTAGTAGGATTGGGGATAGCGTATACTGAAGCTTAT
ACTGAAGCAAATTCCTTCTCCGTAGTACGGTATGTAGGGCCAGTGGGTCCTGCCTGCTGCAATTT
TTCATTCTTTTTCGTTCGTCTGAAAGAAGGATATCGCAACGTTCCGAGGGTCAAGTATGATATTC
GTCTGTTGGAGAGCACTTTACAATCTTTTTATATCTCCTTTTGTAGTCGGGCAATTCCTTGAACT
CCTTCAGAGTGAGCCCAAGGGCGCAGCCGTTCGGACTCAATAATTACTCGAATTGCGTTATATCC
CATTGCCATACAAAGAGGAGTGGGTATATATTAACCGAAGCCTTGTCATAAAAAATAGGCCTTTA
AAAGAAAAATTCCCTGGCAGCATTCCCAAAGGGAAGAGGTAAAGGCCTCGCCAAACAGAAGGAAA
AAAGCCCAAATAGTCTAACATTACGCTAGGTCCACGTATACTAAT
Right flanking sequence: Indices 226285 -- 226784
TATTCCATCTCTGCTTCTATGAATATCTATGCTTCTGGCGAGCCTTCGCTATCAGCCTTCGGCTT
TCAGCAAAAAATTACCGTCTGTTTTTGGCGATTCAGGTGATTACCCTACAATAATCGTACCTTGA
AACGCGTGTTTTTTATTTTCGTTAGTAAACCGCCAAAAAATCAGCTTGGGCAAGCATCGCCAGTA
GGGCGGCTGGCTGACTTGCTTCTTTGGCTTAGCCTTGGCAATAGTAGGGAAAGCCCACCCTGGTT
CGCTTCGCGAACCTAGTATTCGAACCTACAACATTATGATTATGAGCCTTAGGAGTAACCCAAGT
ACTAAAGTGCGCATGGCGCAGCTGCCCGAAACGCACCCCCGAGCGAAAGCTCGAAGAGATGAAAA
CGCTTCGCGTTTTCATGAAAGTTCCCACCAAAACAACTGAATGAGTTGCTAAGAAGCTCTAATTG
CTACAGGCATTGCTGCTGCAAGACAGTTCAAGACAACACTAAGAA
Found at i:226288 original size:31 final size:30
Alignment explanation
Indices: 226224--226314 Score: 95
Period size: 31 Copynumber: 3.1 Consensus size: 30
226214 GTATACTAAT
226224 TATTTA-TATCTTTCTGCTTCTACAA-A--
1 TATTTATTATCTTTCTGCTTCTACAATATC
226250 TATTTATTATCTTTCTGCTTCTACAAATATC
1 TATTTATTATCTTTCTGCTTCTAC-AATATC
*
226281 TATTTATTCCATC--TCTGCTTCTATGAATATC
1 TATTTATT--ATCTTTCTGCTTCTA-CAATATC
226312 TAT
1 TAT
226315 GCTTCTGGCG
Statistics
Matches: 56, Mismatches: 1, Indels: 11
0.82 0.01 0.16
Matches are distributed among these distances:
26 6 0.11
27 17 0.30
28 2 0.04
29 1 0.02
31 27 0.48
33 3 0.05
ACGTcount: A:0.25, C:0.20, G:0.04, T:0.51
Consensus pattern (30 bp):
TATTTATTATCTTTCTGCTTCTACAATATC
Left flanking sequence: Indices 225724 -- 226223
AAGCTTAATTCATCAGCTAGGGTCGCCAATTAGTAGGATTGGGGATAGCGTATACTGAAGCTTAT
ACTGAAGCAAATTCCTTCTCCGTAGTACGGTATGTAGGGCCAGTGGGTCCTGCCTGCTGCAATTT
TTCATTCTTTTTCGTTCGTCTGAAAGAAGGATATCGCAACGTTCCGAGGGTCAAGTATGATATTC
GTCTGTTGGAGAGCACTTTACAATCTTTTTATATCTCCTTTTGTAGTCGGGCAATTCCTTGAACT
CCTTCAGAGTGAGCCCAAGGGCGCAGCCGTTCGGACTCAATAATTACTCGAATTGCGTTATATCC
CATTGCCATACAAAGAGGAGTGGGTATATATTAACCGAAGCCTTGTCATAAAAAATAGGCCTTTA
AAAGAAAAATTCCCTGGCAGCATTCCCAAAGGGAAGAGGTAAAGGCCTCGCCAAACAGAAGGAAA
AAAGCCCAAATAGTCTAACATTACGCTAGGTCCACGTATACTAAT
Right flanking sequence: Indices 226315 -- 226814
GCTTCTGGCGAGCCTTCGCTATCAGCCTTCGGCTTTCAGCAAAAAATTACCGTCTGTTTTTGGCG
ATTCAGGTGATTACCCTACAATAATCGTACCTTGAAACGCGTGTTTTTTATTTTCGTTAGTAAAC
CGCCAAAAAATCAGCTTGGGCAAGCATCGCCAGTAGGGCGGCTGGCTGACTTGCTTCTTTGGCTT
AGCCTTGGCAATAGTAGGGAAAGCCCACCCTGGTTCGCTTCGCGAACCTAGTATTCGAACCTACA
ACATTATGATTATGAGCCTTAGGAGTAACCCAAGTACTAAAGTGCGCATGGCGCAGCTGCCCGAA
ACGCACCCCCGAGCGAAAGCTCGAAGAGATGAAAACGCTTCGCGTTTTCATGAAAGTTCCCACCA
AAACAACTGAATGAGTTGCTAAGAAGCTCTAATTGCTACAGGCATTGCTGCTGCAAGACAGTTCA
AGACAACACTAAGAAAATAGCGCTTGTCTTAAATAAGTAGAAAAA
Found at i:249531 original size:2 final size:2
Alignment explanation
Indices: 249489--249516 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
249479 TGAGTAAAAA
249489 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
249517 TATTATAACA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Left flanking sequence: Indices 248989 -- 249488
GAAAAAAATGCGGAGGGCTCGGTCTGCGTAAGTAGCCCGCTATACACTTTTCATATTCATATGCT
TTGCCAAAATCATGCGTTTCCTAAAAATTACACCTATCACCAAACTCATTTGCTCACTATTAAAG
GCCTGGGTTTTTTGTTAGAGAAGAGCGCATATGGCGATTCAACAACACCTTTATGTCTGAATGTT
GACACCACCGCAGAGTATTACAAACGTGCTACACGTCAGAGTATCATTTCGAGGTCAGCCTGTGC
CATGGGTGGCTTCGCGATAAATTTGCCTCGTTTATGAAGACCTACTATATATTCTTCCTTGCCCA
GTTAGCAGCAAATCGTACCGGACTAGAAAAGAGTCCAGGAATAATCATTTTTATGCCCAGAGAAC
GGAATGATTCTTTGGTTGGTTAATAGATTTATCACCTTAGTATAAGTAAAAATGTTTTAATTAGT
CGATGGAATGTGTTTTAAGCCTAGTTGGACAGGCATGAGTAAAAA
Right flanking sequence: Indices 249517 -- 250016
TATTATAACATATATTATTATAACCTTGAACCAAACCGTTTTTGTGAGAAAAAATGCAATAAAAG
AGGTCACATTATAATTAATGCAACAAACGAACTATGATGTTACGAGGAAAAAAATTGAAACCAAG
GTTCAATACTTTATCCGTCAAACATCCATTGATATTTGATGACTGAATAAAGTACAAAAAAAAAT
AATAGGTTATAAGGTTCGAAGAAAGATGTAGCTCTGTTTTGGTTAATGGATATGTTCAAGGGTTG
TTTTTATTTTGGGCTGGTTTAAAAAACTGCCATATTTCTTTATTAGTTATCTGCCATAGGCAAAT
TATATGTTGCAGTTAAGCCAGCAAGTTGGGTGAAGCCTCTATTAGGCGTGTAAGGCAAATAATAG
AGCCAGAAGTTGGCTTGTTGAAGCCTATATTAGGCGTGTGTGTGTGGGGGGGGGGGGGAAGGAAA
GGTAGGCATTACTGCAGGATTACTAAGCCTTTTTGGAGTCCCTAC
Found at i:249531 original size:15 final size:15
Alignment explanation
Indices: 249511--249540 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
249501 ATATATATAT
249511 ATATATTATTATAAC
1 ATATATTATTATAAC
249526 ATATATTATTATAAC
1 ATATATTATTATAAC
249541 CTTGAACCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.47, C:0.07, G:0.00, T:0.47
Consensus pattern (15 bp):
ATATATTATTATAAC
Left flanking sequence: Indices 249011 -- 249510
TCTGCGTAAGTAGCCCGCTATACACTTTTCATATTCATATGCTTTGCCAAAATCATGCGTTTCCT
AAAAATTACACCTATCACCAAACTCATTTGCTCACTATTAAAGGCCTGGGTTTTTTGTTAGAGAA
GAGCGCATATGGCGATTCAACAACACCTTTATGTCTGAATGTTGACACCACCGCAGAGTATTACA
AACGTGCTACACGTCAGAGTATCATTTCGAGGTCAGCCTGTGCCATGGGTGGCTTCGCGATAAAT
TTGCCTCGTTTATGAAGACCTACTATATATTCTTCCTTGCCCAGTTAGCAGCAAATCGTACCGGA
CTAGAAAAGAGTCCAGGAATAATCATTTTTATGCCCAGAGAACGGAATGATTCTTTGGTTGGTTA
ATAGATTTATCACCTTAGTATAAGTAAAAATGTTTTAATTAGTCGATGGAATGTGTTTTAAGCCT
AGTTGGACAGGCATGAGTAAAAAATATATATATATATATATATAT
Right flanking sequence: Indices 249541 -- 250040
CTTGAACCAAACCGTTTTTGTGAGAAAAAATGCAATAAAAGAGGTCACATTATAATTAATGCAAC
AAACGAACTATGATGTTACGAGGAAAAAAATTGAAACCAAGGTTCAATACTTTATCCGTCAAACA
TCCATTGATATTTGATGACTGAATAAAGTACAAAAAAAAATAATAGGTTATAAGGTTCGAAGAAA
GATGTAGCTCTGTTTTGGTTAATGGATATGTTCAAGGGTTGTTTTTATTTTGGGCTGGTTTAAAA
AACTGCCATATTTCTTTATTAGTTATCTGCCATAGGCAAATTATATGTTGCAGTTAAGCCAGCAA
GTTGGGTGAAGCCTCTATTAGGCGTGTAAGGCAAATAATAGAGCCAGAAGTTGGCTTGTTGAAGC
CTATATTAGGCGTGTGTGTGTGGGGGGGGGGGGGAAGGAAAGGTAGGCATTACTGCAGGATTACT
AAGCCTTTTTGGAGTCCCTACGAAATTCCCCTTTTTTTGATGTTC
Found at i:258381 original size:21 final size:21
Alignment explanation
Indices: 258355--258401 Score: 94
Period size: 21 Copynumber: 2.2 Consensus size: 21
258345 AATACTTACC
258355 CATTGATCCTTCTTGGTATGA
1 CATTGATCCTTCTTGGTATGA
258376 CATTGATCCTTCTTGGTATGA
1 CATTGATCCTTCTTGGTATGA
258397 CATTG
1 CATTG
258402 TGGGATTAGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.19, C:0.19, G:0.19, T:0.43
Consensus pattern (21 bp):
CATTGATCCTTCTTGGTATGA
Left flanking sequence: Indices 257855 -- 258354
TTTGTCCTGCCTTTTGGGCACCTACCCTTCTTTATAAACAGACTCCTGAAGATGTTTTCCAGCGG
GACCTTGATTGCTCTTTTGTTCCCACATATGTGGAACCTGTTTGGCCTTGTTTTGGATGTTGTGG
TTGTTTCTATCTAATAGTTTATTTGTATCCATAATTCCCACTTCTGTTTCTTTGTTTGTTTGTAT
TCCACCACAAATTTGTCCCGTCATCTTTTTGTCTACTGCCCAAAAAAGAGTTCACTCATCTTTTG
TTTGTAGAATGTTGTTTTTTTCCGACTGAAATACCGCTTAAAGTGCAGGGGGGTGTAATTTTGTG
TACCATATTTTTTTTATATAGATATACATTTTATCTCATACACAAAATTACACTCTACAATCGGA
GGAGGTATCTGGGTTGAAACATGCTTCTTCATAGTTGTCAATAGTTCCTGACACGTTAAAATGTT
TTCCAAAATCTGTCATGTTTTTAGGTCCAGAGTTGAATACTTACC
Right flanking sequence: Indices 258402 -- 258901
TGGGATTAGATATCATTTATTTATGTCTAAGACTTAGAAGCTGACGAAGAGGATTCTGCCTCTTT
TTCTTTGTCCTTACCTGATGATTGTCCAGTGGGGGTGGAATCTCCTATGTCAAACGCCTTGCCTA
ACGCTGACAGAACGAACTGAGGTCCATACTTAATGAGATATGGTGTAAGTAATAGATATAGCATA
CCTATGAATAAATAAATGGGATCTCCTTTCAAAATATCAAACACATTCGAAGCTGCCTATCCAAA
GGGTAGGTCATATACATGCCCCCATGACCAATTAAGTTTCTGGGATATCTCCTCACTCATTTCTG
AAACCTTGGAGGCTACTTCTCTTTGACACAAATTTGGTATATCAAAACTTTGCTCCAATTGTTCA
CTCATAAGTGCTATTTTTCATTTTTCATACACATAGCACGGCCCGTATTGATTGAGATTTTATCT
TATGGATGAATATAGCTTGGTTATAAAAGAGAATAATTAATCTCT
Found at i:275948 original size:46 final size:46
Alignment explanation
Indices: 275897--275999 Score: 154
Period size: 46 Copynumber: 2.2 Consensus size: 46
275887 AGGAGGAATT
* *
275897 TTGTGTAGCCAGTTGTCTTCAGCAAAAAAAAGGCAGCTTA-TAGCTG
1 TTGTGTAGCCAGCTGGCTTCAGCAAAAAAAAGGCAGCTTACT-GCTG
**
275943 TTGTGTAGCCAGCTGGCTTCAGCGGAAAAAAGGCAGCTTACTGCTG
1 TTGTGTAGCCAGCTGGCTTCAGCAAAAAAAAGGCAGCTTACTGCTG
275989 TTGTGTAGCCA
1 TTGTGTAGCCA
276000 ACAGCCTTTA
Statistics
Matches: 52, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
46 51 0.98
47 1 0.02
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.27
Consensus pattern (46 bp):
TTGTGTAGCCAGCTGGCTTCAGCAAAAAAAAGGCAGCTTACTGCTG
Left flanking sequence: Indices 275397 -- 275896
GACCCGTCTCGGTCGTAGGAAAAAAATGAATTACTTCGATAAATATTTGGTATTGAACGTAGTAA
TTGTGATTTTTACATATTGTACATACATATAATTCGAAACAATATAAAGAATAAATAATTTTCAA
AGTGGAGTGAAATGGTTCGTAATAATGGATTGCTTTGTTTTGGAAAAAGCAAGAAGCTTCGTTGA
ACCAGTTTTGACTGAGGTTTCCGCCACTTCGAAACGCGAAATTCGTGACCAAGGTGGGCCCTGTC
GAACCAAAATAAGATCCGAAACAGGCCGGCAATGCATTATAATAAGCTCGGCCCCTTGGCGCTGT
TAGCTTGTTAGTAAGGGGCCAAGCTCAAAAAATTTGCTAGGCTGGGGGGGGGTTGTTGGGGTAAG
CCGTTGGCCGCCTGAATAAGGGTTTGCTAGGATAAGAATTGAGAATAAGTAAATTCGCTGAAAAA
CTTTTGACAAATAAGTACATATTTCAGAAAAAATGAGGAGGAATT
Right flanking sequence: Indices 276000 -- 276499
ACAGCCTTTAGAAGGAAGTAGGTTGAAGCTGCAAGAGTAAGAGCAAGCAGCCATCTCCGTCTGCT
GCCCAAAACAGAGAACTGTACGTGAACGTTATCGCTCGTACGGCTCCTAACCCCAAGTTTAGTCG
AGTAGTTTTGTTCGGCTGCTTTCCTGTTCCACTCGCTTGACGAGGTGTATTCCTACCGAAAGAGA
TCTGTGTGAGAGGTCCTCATCTGCCAAATGTTCACTTCGCTTAGACCCTCCATCCAGATAATAAT
GGGTAGGAGTGGTCTCCTTCCAAGCTTCGCCGGCGCCACTTCGTGGGGCCGGGTGATGGTTCCTG
ATTGTCCGGTCAATCTTTCTTCGAACCTTGCGATCTTGACCGGTCTGCGACTCGGCGTAGATGTG
CTCCCCGATTTGGCGGGACTGTCTTTTGGGCCCGTAACCTAGCCGTACTCGTCACAGATCGGATG
CACCACTCTCTGGATAGCATTACGGTCTCCATACCCCTACAACAT
Found at i:277690 original size:42 final size:42
Alignment explanation
Indices: 277546--277686 Score: 228
Period size: 42 Copynumber: 3.4 Consensus size: 42
277536 GTAATCAATG
* *
277546 CCGGTGAATACCAAGCCTTCTATAACCTCTTCCGTAGGTGAG
1 CCGGTGAATATCAAGCCTTCTATAACCTCTTCCGTAGGTGAA
277588 CCGGTGAATATCAAGCCTTCTATAACCTCTTCCGTAGGTGAA
1 CCGGTGAATATCAAGCCTTCTATAACCTCTTCCGTAGGTGAA
* * * *
277630 CCGGTGAATATCAAGTCTTCTATACCCCCTTCCGTAGGCGAA
1 CCGGTGAATATCAAGCCTTCTATAACCTCTTCCGTAGGTGAA
277672 CCGGTGAATATCAAG
1 CCGGTGAATATCAAG
277687 TCTTTTTTTT
Statistics
Matches: 93, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 93 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.26
Consensus pattern (42 bp):
CCGGTGAATATCAAGCCTTCTATAACCTCTTCCGTAGGTGAA
Left flanking sequence: Indices 277046 -- 277545
CGAAGGAGAGGAGAGACTTAGGCGGCTCTGGCTGTTACTTAAGCAAGCAGCCTTGGAGTTAAAGT
ATCGGTGTAGGAGTAGCAGCTCTAGCCATTGCAGTTGCGGGTGTGACAGTCCCCAACCGCTATAA
CGAGGAAAAAGATCAGGAAAATTCAAGAAAGTACATAATAAAAAAAAGTCATTTTGTACTCGTTA
AAGGGCTAAAAGGAGCCGTCCAGCAAGATCAGCGGTCCTAACAGCGCAGCAGATCCGAGTAAATC
CAGCAGCAGTTCCTGCCTGCATTAGGTACATAAAAGGCTCAGTTTATAAAAAAAAAGCAAGTTTA
AATTGAAGTACCTATTTTTTAAACACCCAGTATTGAGGATAATGTTACTAAAATGAATTGACGAA
TATAATCCAATCTAAAACTCTCACTTTTTTCCTTTCAAACTTGTTCAATAATTCTTTATAGCTTT
TTGATAATACAGCAATAATTGAGTTATTTCCAATTGTAATCAATG
Right flanking sequence: Indices 277687 -- 278186
TCTTTTTTTTTATACTTTCGAAAGTAGACGAAGCCGGTGAGACCTCTTCAATAAAAAATATGAAA
AAATCTCAGAATTAAAAACAAAGATGTCAAAATGTGAAAATGAATAGAAATGAGTAGAAATAAAA
GTAAGAATAAATGAAAATAAATAATAATGAGTTTCCCATTTCACTGGGCAAGGTAAAAAGGCATG
CGGCCAATTCTTTTGCGAAGAAAAACAAGAATCGGCTAATTTTTACTTTTATTCACGAGGCAAGT
GGCCGATCAGCCGATTTGCCTGCCGTTTTCGTCAATTATTTATTGGCACGCAGGGACCGAGCAAA
GATTGCCTCCCTGCGGGCGGCTCGATGCCGTAAAGTTGGGTTGTTGCACACTGGTACTGAGAAGC
ATGTACCCTTTACTTCAGCTATGGCACCGAAAATACAATAGTACCTCTTGGATGAAGGAATTGCA
CAAGTGCTCGCTAGTCTTTTTTCTCCAGGTGTAAAGCTTCTTTCT
Found at i:279202 original size:27 final size:28
Alignment explanation
Indices: 279138--279202 Score: 71
Period size: 27 Copynumber: 2.3 Consensus size: 28
279128 AGCAACCTAC
*
279138 CAAGCTGAAGGCTTTTATAATGCAAAGCT
1 CAAGCTGATGGC-TTTATAATGCAAAGCT
* *
279167 CATGCTGATGGC-TTA-AATGCAACGCCT
1 CAAGCTGATGGCTTTATAATGCAAAG-CT
279194 CAAGCTGAT
1 CAAGCTGAT
279203 CCCAGCTCGA
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
26 8 0.26
27 13 0.42
29 10 0.32
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.26
Consensus pattern (28 bp):
CAAGCTGATGGCTTTATAATGCAAAGCT
Left flanking sequence: Indices 278638 -- 279137
ATTAGTATATTGAGCATATACAACCAGACCACCGCAAAAGGATACCCATAATCATAAGAGATGCA
TAATGCATCTCGACAAATTTGTTTCGATGTTGCAATAATGAATCAAAAAAATTTTCCTTCTCCTT
CATAATTGTTTTCTTTAGCCATATTCTTTCTTCTGCCTAGTCTTTTATCTTGCCCAGTAGTAAAC
TTTGTGTTCTCCATGATTGACGTAATCCTGATAAAACGGGGGGGGGCAAGATTAACCCATCATCA
CTAACTTGCTAGCTTGTTTTCTGTAACATGCAGCTTTCAACATACAAACATGCGGCACTGCATTC
TTGTAGCATGCGAAACATCCCTTTGGTCGAGTGCTGCCCCGAAGGGGGGCGGCGGCCCTGGTTGT
CAACCACAATAAAAGGCTTAATCCTCATTTTTTAGGCATCAGACTCAAGCTTCATGCTTCAAGCA
GAGTTCATATTTCGAAAAGCAACACCTCAAAGAGGAGCAACCTAC
Right flanking sequence: Indices 279203 -- 279702
CCCAGCTCGAACAGAAGTCAACCACACCAACTTTGCCCAAACTACGCAAATCATATCCGACAAAA
AACCCCTTCCTCCTTCCCCCTACAAATGCAAAGCCAATGAAGGTGACACGAGGGCGAAGAAGAAT
ACTTGTCTTTGCGGTGCCCTGGCCAGCATTACAGCAGCAACCACAGGCGGCAAGCCTGGAGGACA
TCCAGATTGGCGAAGACTACGCCATGGGGACGTAGCGGAGCAGTTCCTATAGCCACGGCAAAGTG
CTGATTTGTTGCTTGAGAGCTTCGTCTTAGTAGCCTTGCTCTGGCTTCGACCGGATTTGCCAAAT
CAACCACCCCATATTAGGTGGGGGGGGCGAAGCGCGAACAGAAGCGGTTGGGCTTGTGTGTGCCT
CCCCCTACAACAGCATATACCCCTTTTTTTTAAGTGGCAAGGCCTATTTATCGATCAACGTAAGT
GAACTGTGCAACGACGTTTTGTGAAACCGCACCTACGACGAGCCT
Found at i:283165 original size:28 final size:28
Alignment explanation
Indices: 283133--283212 Score: 142
Period size: 28 Copynumber: 2.9 Consensus size: 28
283123 GAAAAGTTCC
283133 CCAGCCTTTGTTTCCTTCGTTTGCTTCT
1 CCAGCCTTTGTTTCCTTCGTTTGCTTCT
*
283161 CCAGCCTTTGTTTTCTTCGTTTGCTTCT
1 CCAGCCTTTGTTTCCTTCGTTTGCTTCT
*
283189 CCAGCCTTTGCTTCCTTCGTTTGC
1 CCAGCCTTTGTTTCCTTCGTTTGC
283213 CTGGATTTAT
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 49 1.00
ACGTcount: A:0.04, C:0.33, G:0.15, T:0.49
Consensus pattern (28 bp):
CCAGCCTTTGTTTCCTTCGTTTGCTTCT
Left flanking sequence: Indices 282633 -- 283132
GATAACGCCAGTACACCGGTTTTGGAGACAGTATTAGTTTTGATATATCCCGAGAGTGATGATCC
TTCGGCCTGGTATCTTGCGTGGAGTACCTTTCACACTCACGGGTTGTTCCCAGGCTTCCTAGGGA
GTGTCCATAAAAAAATAGGTTGGTTACTTTTTGGTAAAGCCGGTAAAACTCCAACACAAAGAACT
CCGAAGAAAAACGCGAAGCGAACCCGGGTGGGCTTTGCCCTGCTTTGGCCGAGAAGATTATTATA
TTATTATTATTTCATGTATTTTTTCTCATAAAGCCTTTGGATTTTAAAGCTAAGGTCTTCGCGCC
AAGCGAAGCGTTTTATGGCTTTGCTTCGCGCCTTTTTTTCTGGTCTTCGACCTTTTGTTCGTGTA
AGTGGCTTTGCCCAAAACGTATAGCCGCGCTCTGCGCCTTTTATCGTAGAGTCTTTTGTTTGCGC
TCTGCGCCTACTTCCAAAGTTATCCTTCTGTAGAAGAAAAGTTCC
Right flanking sequence: Indices 283213 -- 283712
CTGGATTTATCTTCAAAAGTAGCGCGTTCCCCACCTTCGACCTTTTATTTTGCTTGGTTTCTAGA
AAAGCAAATGATTATTTAGGCCTTCCTTCGGCCCTCCGGCCCTCCAGCGATTATTTTTTTCGATT
ACTGCGTTCCGTAGGGCTTGCAGTTTCTTTTGAGAGGTCCCATCCACGGTCGTTCTGTCTGGTCT
CGTAGCGTTCTCGATCCAGGTCCTGAAGCTGCTAAGGAACCAAAGGTCCACAAAAGCGTCAGCCC
CTTTCCGTAGGAGCACATTTTCGGATTCATCCTCTTCGGGATCCGTGGGAGCCTGACTATAATAG
GACTTGGTTTAATATGGTCTGCTTAGGTATAGCAGATGCTTAGGTCCCCTAATGCGGCTAGTAGT
TCTAGCGCTTTCCCTTTGCGTCTCTTTTGCTTGAGGCGAGTAGTACTAAGGGCCTTGCGCCATCC
ACCCTCGTCCAGATGACTGAAATGGACTTCACCCGTGTTGCCTAC
Found at i:283200 original size:15 final size:15
Alignment explanation
Indices: 283152--283202 Score: 54
Period size: 15 Copynumber: 3.5 Consensus size: 15
283142 GTTTCCTTCG
283152 TTTGCTTCTCCAGCC
1 TTTGCTTCTCCAGCC
* *
283167 TTTGTTTTCTTC-G--
1 TTTG-CTTCTCCAGCC
283180 TTTGCTTCTCCAGCC
1 TTTGCTTCTCCAGCC
283195 TTTGCTTC
1 TTTGCTTC
283203 CTTCGTTTGC
Statistics
Matches: 28, Mismatches: 4, Indels: 8
0.70 0.10 0.20
Matches are distributed among these distances:
12 5 0.18
13 5 0.18
15 13 0.46
16 5 0.18
ACGTcount: A:0.04, C:0.31, G:0.14, T:0.51
Consensus pattern (15 bp):
TTTGCTTCTCCAGCC
Left flanking sequence: Indices 282652 -- 283151
TTTTGGAGACAGTATTAGTTTTGATATATCCCGAGAGTGATGATCCTTCGGCCTGGTATCTTGCG
TGGAGTACCTTTCACACTCACGGGTTGTTCCCAGGCTTCCTAGGGAGTGTCCATAAAAAAATAGG
TTGGTTACTTTTTGGTAAAGCCGGTAAAACTCCAACACAAAGAACTCCGAAGAAAAACGCGAAGC
GAACCCGGGTGGGCTTTGCCCTGCTTTGGCCGAGAAGATTATTATATTATTATTATTTCATGTAT
TTTTTCTCATAAAGCCTTTGGATTTTAAAGCTAAGGTCTTCGCGCCAAGCGAAGCGTTTTATGGC
TTTGCTTCGCGCCTTTTTTTCTGGTCTTCGACCTTTTGTTCGTGTAAGTGGCTTTGCCCAAAACG
TATAGCCGCGCTCTGCGCCTTTTATCGTAGAGTCTTTTGTTTGCGCTCTGCGCCTACTTCCAAAG
TTATCCTTCTGTAGAAGAAAAGTTCCCCAGCCTTTGTTTCCTTCG
Right flanking sequence: Indices 283203 -- 283702
CTTCGTTTGCCTGGATTTATCTTCAAAAGTAGCGCGTTCCCCACCTTCGACCTTTTATTTTGCTT
GGTTTCTAGAAAAGCAAATGATTATTTAGGCCTTCCTTCGGCCCTCCGGCCCTCCAGCGATTATT
TTTTTCGATTACTGCGTTCCGTAGGGCTTGCAGTTTCTTTTGAGAGGTCCCATCCACGGTCGTTC
TGTCTGGTCTCGTAGCGTTCTCGATCCAGGTCCTGAAGCTGCTAAGGAACCAAAGGTCCACAAAA
GCGTCAGCCCCTTTCCGTAGGAGCACATTTTCGGATTCATCCTCTTCGGGATCCGTGGGAGCCTG
ACTATAATAGGACTTGGTTTAATATGGTCTGCTTAGGTATAGCAGATGCTTAGGTCCCCTAATGC
GGCTAGTAGTTCTAGCGCTTTCCCTTTGCGTCTCTTTTGCTTGAGGCGAGTAGTACTAAGGGCCT
TGCGCCATCCACCCTCGTCCAGATGACTGAAATGGACTTCACCCG
Found at i:308624 original size:26 final size:26
Alignment explanation
Indices: 308594--308644 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
308584 AACCCATAAG
308594 TATAGAAAGCCCGGAAGGGCACCTCA
1 TATAGAAAGCCCGGAAGGGCACCTCA
308620 TATAGAAAGCCCGGAAGGGCACCTC
1 TATAGAAAGCCCGGAAGGGCACCTC
308645 CTCCTCAATC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.33, C:0.27, G:0.27, T:0.12
Consensus pattern (26 bp):
TATAGAAAGCCCGGAAGGGCACCTCA
Left flanking sequence: Indices 308094 -- 308593
ATTACCAAAAGAGAAAGTCTTCGCTACACTTTTGAAGTTCTTCGAAAGCAATACCACGAAAGTGA
GAAAACATTATCCTTCCTTCATCACCATGGCCTTATAACTATAATTTCGTGTTAGCACTTGAACG
AAAATTACGAAGTGATAACGGCAGCAGCAAGTGTGGTGGTGTTTATGAAGCCGAGTACCAGAGTA
TGACAAGTTCGGATCCAAGACCAGGAGTATAAAGAACGTATAGCCATAGCAGACCAAAGGCTAAA
AAGAGCATATTTAGCTTTTCAAGCTAGATGGTGAAAGCTATATTGAAAAACTTTTCAAACCAAGG
CAATATAAAGACACAATGTTCAAAAGGATAACTTAAGTCCCTAAGGGCATAGCAAAAGAAGATAT
CTTGTTCTTTTCTCATGAGCCCCGCAGGGCACCTCCTGCCAACCCCCGCACACACGAAATATTGT
TCTTTTGTGGTTAGCCCCTGGGCTAAGCCGTACTGAACCCATAAG
Right flanking sequence: Indices 308645 -- 309144
CTCCTCAATCTATAAAACCCTTCCGGGCACCCTTATAAGTATAGTATAGAAAGCCCTTCCCGGGA
AGGGCACCCCCTTAAGAACCCTTACTTAACTTAGTTTAGTTAAACCCGCAGGGCACAGCACTTGA
ACATCTCATTATTTCTTAGTTTAGCTCCTTGGGACAGTCAAAATCTCTGGGCATGCCATAGTGAA
GGCATATAGAAATGCGTTACCATTAGCCCCGCAGGGCTTAGCAGTGAAAAGCTCTCTGGGTTTAG
CCCCGCAGGGCATAGCACTTAAACATCTCTTTTGATTTCTCCTGCGGAAAAGAGGGTTAATATTT
TTCTGAACATCGTCACATCCGAAATGTGTGTAGGTTTTCCAATTAATTCGATGGAAATCCCGCTG
GAAGGTGTAGGTTGATGTAGGTTTTTCAACCTACTTAGAGTGAATGTGTAGGTGGTGTAGGTTTA
GCTCAAATCTTTATATAAATTATGCTTAATCTTGTTATATACTCT
Found at i:309570 original size:22 final size:22
Alignment explanation
Indices: 309542--309590 Score: 64
Period size: 22 Copynumber: 2.2 Consensus size: 22
309532 TGGCCTGAAG
* *
309542 CTGGCATTGTAGG-AGGTGGTCA
1 CTGGCATGGT-GGAAGGTGGCCA
309564 CTGGCATGGTGGAAGGTGGCCA
1 CTGGCATGGTGGAAGGTGGCCA
309586 CTGGC
1 CTGGC
309591 GGAGGCGCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 2 0.08
22 22 0.92
ACGTcount: A:0.16, C:0.18, G:0.43, T:0.22
Consensus pattern (22 bp):
CTGGCATGGTGGAAGGTGGCCA
Left flanking sequence: Indices 309042 -- 309541
TAGGTTGATGTAGGTTTTTCAACCTACTTAGAGTGAATGTGTAGGTGGTGTAGGTTTAGCTCAAA
TCTTTATATAAATTATGCTTAATCTTGTTATATACTCTTATTACGGCATTTGACAAATCTTCAAT
TTCATTTGAGTTGGAGTGCCACCTTCTTTTGGGAAGGTGGCACTCCACAAACTACTATGTGCTCT
TCGGGAGGGAGGGTAGAAAGATATGTGTACTTACGCGCCCTTCGGGAGGGTAGAAAAGATATGTG
TACTTACTACCCTGTTTAAGGGGCTCACTACATATATAGATATAGATATGTGCACTTACTTTGCG
CCCTTCGGGGAGGGTAGAAACAAAGATATGTGCACTTACTTTGCGCCCTGTTTAAGGGGCTCACT
CCAAAAGAAACAAAGATATGTGTACTTACGGGCCCTGCGGGGCTAACTACAGACAGAATGGGTGG
CCAGGAGGGAGCTCCTTTGAGGAGGAGCTCCCGCCTGGCCTGAAG
Right flanking sequence: Indices 309591 -- 310090
GGAGGCGCAATAACCCTGAGGGATTTAGAGCCAGAAAAGAGAAATCTTCAGCCTGAGACCTTAAA
CAGGATGTGACGATGTGACGATGTGACGGATCCTCAACCCCTATGTTTGAGGATGTGACGATGTG
ACGATGTGACGGATCAATGAAAACCCTATGTGTGTTTTAGGGGCTAACTACAGATATAGATATAG
ATATGTGCCAGTGCTGTGCCCTTTATAGAGGGGCTAACTACAGAGATAGATATGTACTTACGCGC
CCTGTTTAAGGGGCACACTACCAAAGAAACAAAGATATGTGTACTTACGCGCCCTGTTTAAGGGG
CACACTACAAATATCTCACCTCAATATCTATTTTGGCGCCGAAAATACATAAGCTGTGAATATTC
ACCTCAAATAGGCCGAAATAGCTGTGAATATTCACCTCAAATAGGCCGAAATAGCTGTGGTTGGC
CAGGTGGGTGCTCCTCCTAAAGCTCCCGCCTTCCCTAGCTGGCAT
Found at i:309672 original size:8 final size:8
Alignment explanation
Indices: 309659--309683 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
309649 CCTTAAACAG
309659 GATGTGAC
1 GATGTGAC
309667 GATGTGAC
1 GATGTGAC
309675 GATGTGAC
1 GATGTGAC
309683 G
1 G
309684 GATCCTCAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.24, C:0.12, G:0.40, T:0.24
Consensus pattern (8 bp):
GATGTGAC
Left flanking sequence: Indices 309159 -- 309658
ACAAATCTTCAATTTCATTTGAGTTGGAGTGCCACCTTCTTTTGGGAAGGTGGCACTCCACAAAC
TACTATGTGCTCTTCGGGAGGGAGGGTAGAAAGATATGTGTACTTACGCGCCCTTCGGGAGGGTA
GAAAAGATATGTGTACTTACTACCCTGTTTAAGGGGCTCACTACATATATAGATATAGATATGTG
CACTTACTTTGCGCCCTTCGGGGAGGGTAGAAACAAAGATATGTGCACTTACTTTGCGCCCTGTT
TAAGGGGCTCACTCCAAAAGAAACAAAGATATGTGTACTTACGGGCCCTGCGGGGCTAACTACAG
ACAGAATGGGTGGCCAGGAGGGAGCTCCTTTGAGGAGGAGCTCCCGCCTGGCCTGAAGCTGGCAT
TGTAGGAGGTGGTCACTGGCATGGTGGAAGGTGGCCACTGGCGGAGGCGCAATAACCCTGAGGGA
TTTAGAGCCAGAAAAGAGAAATCTTCAGCCTGAGACCTTAAACAG
Right flanking sequence: Indices 309684 -- 310183
GATCCTCAACCCCTATGTTTGAGGATGTGACGATGTGACGATGTGACGGATCAATGAAAACCCTA
TGTGTGTTTTAGGGGCTAACTACAGATATAGATATAGATATGTGCCAGTGCTGTGCCCTTTATAG
AGGGGCTAACTACAGAGATAGATATGTACTTACGCGCCCTGTTTAAGGGGCACACTACCAAAGAA
ACAAAGATATGTGTACTTACGCGCCCTGTTTAAGGGGCACACTACAAATATCTCACCTCAATATC
TATTTTGGCGCCGAAAATACATAAGCTGTGAATATTCACCTCAAATAGGCCGAAATAGCTGTGAA
TATTCACCTCAAATAGGCCGAAATAGCTGTGGTTGGCCAGGTGGGTGCTCCTCCTAAAGCTCCCG
CCTTCCCTAGCTGGCATTGTATTCGGTGGCCAGGTGGGTGCTCCTCCTAAAAAGGAGCACCCGCG
CCTGGCCTTCCCTAGCTGGCATTGTATTCGGTGGCCCCTACGTAC
Found at i:309720 original size:8 final size:8
Alignment explanation
Indices: 309707--309731 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
309697 TATGTTTGAG
309707 GATGTGAC
1 GATGTGAC
309715 GATGTGAC
1 GATGTGAC
309723 GATGTGAC
1 GATGTGAC
309731 G
1 G
309732 GATCAATGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.24, C:0.12, G:0.40, T:0.24
Consensus pattern (8 bp):
GATGTGAC
Left flanking sequence: Indices 309207 -- 309706
GGTGGCACTCCACAAACTACTATGTGCTCTTCGGGAGGGAGGGTAGAAAGATATGTGTACTTACG
CGCCCTTCGGGAGGGTAGAAAAGATATGTGTACTTACTACCCTGTTTAAGGGGCTCACTACATAT
ATAGATATAGATATGTGCACTTACTTTGCGCCCTTCGGGGAGGGTAGAAACAAAGATATGTGCAC
TTACTTTGCGCCCTGTTTAAGGGGCTCACTCCAAAAGAAACAAAGATATGTGTACTTACGGGCCC
TGCGGGGCTAACTACAGACAGAATGGGTGGCCAGGAGGGAGCTCCTTTGAGGAGGAGCTCCCGCC
TGGCCTGAAGCTGGCATTGTAGGAGGTGGTCACTGGCATGGTGGAAGGTGGCCACTGGCGGAGGC
GCAATAACCCTGAGGGATTTAGAGCCAGAAAAGAGAAATCTTCAGCCTGAGACCTTAAACAGGAT
GTGACGATGTGACGATGTGACGGATCCTCAACCCCTATGTTTGAG
Right flanking sequence: Indices 309732 -- 310231
GATCAATGAAAACCCTATGTGTGTTTTAGGGGCTAACTACAGATATAGATATAGATATGTGCCAG
TGCTGTGCCCTTTATAGAGGGGCTAACTACAGAGATAGATATGTACTTACGCGCCCTGTTTAAGG
GGCACACTACCAAAGAAACAAAGATATGTGTACTTACGCGCCCTGTTTAAGGGGCACACTACAAA
TATCTCACCTCAATATCTATTTTGGCGCCGAAAATACATAAGCTGTGAATATTCACCTCAAATAG
GCCGAAATAGCTGTGAATATTCACCTCAAATAGGCCGAAATAGCTGTGGTTGGCCAGGTGGGTGC
TCCTCCTAAAGCTCCCGCCTTCCCTAGCTGGCATTGTATTCGGTGGCCAGGTGGGTGCTCCTCCT
AAAAAGGAGCACCCGCGCCTGGCCTTCCCTAGCTGGCATTGTATTCGGTGGCCCCTACGTACCCT
GGCCGCACACTAGCTTGTCTTCACTGGCCGCACACAAGCTTGTAA
Found at i:310004 original size:33 final size:33
Alignment explanation
Indices: 309967--310039 Score: 146
Period size: 33 Copynumber: 2.2 Consensus size: 33
309957 AAAATACATA
309967 AGCTGTGAATATTCACCTCAAATAGGCCGAAAT
1 AGCTGTGAATATTCACCTCAAATAGGCCGAAAT
310000 AGCTGTGAATATTCACCTCAAATAGGCCGAAAT
1 AGCTGTGAATATTCACCTCAAATAGGCCGAAAT
310033 AGCTGTG
1 AGCTGTG
310040 GTTGGCCAGG
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 40 1.00
ACGTcount: A:0.34, C:0.21, G:0.21, T:0.25
Consensus pattern (33 bp):
AGCTGTGAATATTCACCTCAAATAGGCCGAAAT
Left flanking sequence: Indices 309467 -- 309966
TGCGGGGCTAACTACAGACAGAATGGGTGGCCAGGAGGGAGCTCCTTTGAGGAGGAGCTCCCGCC
TGGCCTGAAGCTGGCATTGTAGGAGGTGGTCACTGGCATGGTGGAAGGTGGCCACTGGCGGAGGC
GCAATAACCCTGAGGGATTTAGAGCCAGAAAAGAGAAATCTTCAGCCTGAGACCTTAAACAGGAT
GTGACGATGTGACGATGTGACGGATCCTCAACCCCTATGTTTGAGGATGTGACGATGTGACGATG
TGACGGATCAATGAAAACCCTATGTGTGTTTTAGGGGCTAACTACAGATATAGATATAGATATGT
GCCAGTGCTGTGCCCTTTATAGAGGGGCTAACTACAGAGATAGATATGTACTTACGCGCCCTGTT
TAAGGGGCACACTACCAAAGAAACAAAGATATGTGTACTTACGCGCCCTGTTTAAGGGGCACACT
ACAAATATCTCACCTCAATATCTATTTTGGCGCCGAAAATACATA
Right flanking sequence: Indices 310040 -- 310539
GTTGGCCAGGTGGGTGCTCCTCCTAAAGCTCCCGCCTTCCCTAGCTGGCATTGTATTCGGTGGCC
AGGTGGGTGCTCCTCCTAAAAAGGAGCACCCGCGCCTGGCCTTCCCTAGCTGGCATTGTATTCGG
TGGCCCCTACGTACCCTGGCCGCACACTAGCTTGTCTTCACTGGCCGCACACAAGCTTGTAAGCC
AGGTGGGTGCTCCTCCTCAAGGAGCACCCGCCTGGCTGGCCTTCACTAGCTTGTCTGCCAGCTGA
TTTAAGCTCCCCACTGCATTGGTGAGTCGATTGCCTCTCTGGGTAAATCGTGACATTGAAAGACA
ACGTGACATATCCGACTGCATAAGGTGAATCCCGGTCAAAATATCCTATAAAGATTTCTCTCAAA
CCTACACAACCTACACACTCACTCTGTAATTGAAAAAAAACCTACACCTTTCCGCGTAAAACCTA
CACCTTTCAGCGTAAAACCTACACCTTAAAACGTGAAACTGACAC
Found at i:310492 original size:21 final size:21
Alignment explanation
Indices: 310466--310521 Score: 103
Period size: 21 Copynumber: 2.7 Consensus size: 21
310456 TAATTGAAAA
*
310466 AAAACCTACACCTTTCCGCGT
1 AAAACCTACACCTTTCAGCGT
310487 AAAACCTACACCTTTCAGCGT
1 AAAACCTACACCTTTCAGCGT
310508 AAAACCTACACCTT
1 AAAACCTACACCTT
310522 AAAACGTGAA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 34 1.00
ACGTcount: A:0.34, C:0.36, G:0.07, T:0.23
Consensus pattern (21 bp):
AAAACCTACACCTTTCAGCGT
Left flanking sequence: Indices 309966 -- 310465
AAGCTGTGAATATTCACCTCAAATAGGCCGAAATAGCTGTGAATATTCACCTCAAATAGGCCGAA
ATAGCTGTGGTTGGCCAGGTGGGTGCTCCTCCTAAAGCTCCCGCCTTCCCTAGCTGGCATTGTAT
TCGGTGGCCAGGTGGGTGCTCCTCCTAAAAAGGAGCACCCGCGCCTGGCCTTCCCTAGCTGGCAT
TGTATTCGGTGGCCCCTACGTACCCTGGCCGCACACTAGCTTGTCTTCACTGGCCGCACACAAGC
TTGTAAGCCAGGTGGGTGCTCCTCCTCAAGGAGCACCCGCCTGGCTGGCCTTCACTAGCTTGTCT
GCCAGCTGATTTAAGCTCCCCACTGCATTGGTGAGTCGATTGCCTCTCTGGGTAAATCGTGACAT
TGAAAGACAACGTGACATATCCGACTGCATAAGGTGAATCCCGGTCAAAATATCCTATAAAGATT
TCTCTCAAACCTACACAACCTACACACTCACTCTGTAATTGAAAA
Right flanking sequence: Indices 310522 -- 311021
AAAACGTGAAACTGACACCTTCACCTTCACATTTGCATACAATCGATTGACTAATGTAGTTGGTC
CTGGCAAAGGGCCACCTGGCAAGGCGGAAGGACCTGGGGATCTAGACATACAGGTCCCGCGGACT
CTAGGTAAGTAGATAGGTCTGGAAGTCGAGATTAATTTCTACAATGTTCCTGGCCGTTAATATTG
ACCTCCTTGAGTTCACGTTCGTATTATTGGGAATGTCACCTTGTAAGATTCCATGGTATACAATA
AGGTGTTAACGTTGACTTTGAGGAAATTGACATATATAAGAATATTCACAATTTGGGTTTAATAT
TCACAATTGTTTGGTTAATATTCATCCCAATATTTCTCTATAAATACCGTTGTAAGGTGTAGGTT
TTTGTAGGTTTCGCACAAATCTTCTCAAAAAAACGAAAAAAAACGAGAAGAACAATGGATTATCA
TTTTTGGCTATATCTGTTATTACAGCAAAAATCCTGTTCTCACGG
Found at i:310533 original size:21 final size:21
Alignment explanation
Indices: 310466--310542 Score: 66
Period size: 21 Copynumber: 3.7 Consensus size: 21
310456 TAATTGAAAA
****
310466 AAAACCTACACCTTTCCGCGT
1 AAAACCTACACCTTAAAACGT
** *
310487 AAAACCTACACCTTTCAGCGT
1 AAAACCTACACCTTAAAACGT
310508 AAAACCTACACCTTAAAACGT
1 AAAACCTACACCTTAAAACGT
*
310529 GAAA-CTGACACCTT
1 AAAACCT-ACACCTT
310543 CACCTTCACA
Statistics
Matches: 50, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
20 2 0.04
21 48 0.96
ACGTcount: A:0.36, C:0.32, G:0.09, T:0.22
Consensus pattern (21 bp):
AAAACCTACACCTTAAAACGT
Left flanking sequence: Indices 309966 -- 310465
AAGCTGTGAATATTCACCTCAAATAGGCCGAAATAGCTGTGAATATTCACCTCAAATAGGCCGAA
ATAGCTGTGGTTGGCCAGGTGGGTGCTCCTCCTAAAGCTCCCGCCTTCCCTAGCTGGCATTGTAT
TCGGTGGCCAGGTGGGTGCTCCTCCTAAAAAGGAGCACCCGCGCCTGGCCTTCCCTAGCTGGCAT
TGTATTCGGTGGCCCCTACGTACCCTGGCCGCACACTAGCTTGTCTTCACTGGCCGCACACAAGC
TTGTAAGCCAGGTGGGTGCTCCTCCTCAAGGAGCACCCGCCTGGCTGGCCTTCACTAGCTTGTCT
GCCAGCTGATTTAAGCTCCCCACTGCATTGGTGAGTCGATTGCCTCTCTGGGTAAATCGTGACAT
TGAAAGACAACGTGACATATCCGACTGCATAAGGTGAATCCCGGTCAAAATATCCTATAAAGATT
TCTCTCAAACCTACACAACCTACACACTCACTCTGTAATTGAAAA
Right flanking sequence: Indices 310543 -- 311042
CACCTTCACATTTGCATACAATCGATTGACTAATGTAGTTGGTCCTGGCAAAGGGCCACCTGGCA
AGGCGGAAGGACCTGGGGATCTAGACATACAGGTCCCGCGGACTCTAGGTAAGTAGATAGGTCTG
GAAGTCGAGATTAATTTCTACAATGTTCCTGGCCGTTAATATTGACCTCCTTGAGTTCACGTTCG
TATTATTGGGAATGTCACCTTGTAAGATTCCATGGTATACAATAAGGTGTTAACGTTGACTTTGA
GGAAATTGACATATATAAGAATATTCACAATTTGGGTTTAATATTCACAATTGTTTGGTTAATAT
TCATCCCAATATTTCTCTATAAATACCGTTGTAAGGTGTAGGTTTTTGTAGGTTTCGCACAAATC
TTCTCAAAAAAACGAAAAAAAACGAGAAGAACAATGGATTATCATTTTTGGCTATATCTGTTATT
ACAGCAAAAATCCTGTTCTCACGGCTTTTTGCAAATCCAACCAGT
Found at i:311751 original size:14 final size:14
Alignment explanation
Indices: 311732--311758 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
311722 GGCCTTCACT
311732 ATTTGTTCATTAAG
1 ATTTGTTCATTAAG
311746 ATTTGTTCATTAA
1 ATTTGTTCATTAA
311759 TTAATATTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.07, G:0.11, T:0.52
Consensus pattern (14 bp):
ATTTGTTCATTAAG
Left flanking sequence: Indices 311232 -- 311731
GGTATCTTCAAACCCAATCAGGCCAATCAGGTATAAACGCCGCTTCATTTTCGGGATAAATAAAC
AACCCTAAAATGAGAAAAAACCTCCAAAATATGAACGAGTCTGACATTTGTGAGGCAATTCGAGG
GTTGGATATGGCGTGTTCACTGTATGAAGCAGCCACCCACCAGGAAATCCAGAAACAGGAGGAGA
GGTTCGAAGAAAACAAATCCTAGCTAGGCCAGAGGATCCTCCTGACTCTTCTGCTGGTGAACCAA
AAACCGACCGCAAGGCTTCGCTCGCCCTGCTCTGCCTGACCTAAAGAATCGTCCTGCTCTGCCGG
GCGGCGTAAAGAATCTTGTTATAATCTTGTTCCTGATCCCACACTAGTTCCGAAGAGTGCCTTCA
ACTCTGTCTGGATAGGGTAGCCTCTTTCATCAAGAATTTAATCTTTTTCTCTCTTTTGAAAAAAC
AAATCTCATGCTCCGAAAAGGTCGGAGCGGTGCATGGCCTTCACT
Right flanking sequence: Indices 311759 -- 312258
TTAATATTGTTTTTTCTGGGCGCTATGGTAAGACATGAAAACACCCGATCCCATTCCGACCTCGA
TATGTGAAATCGTCTTACGCCATATGTACTGAAAGATTTCGGGAGACATGGTTCAAGCCCGGACA
AAGCACTTGATCTTGGGTTGGATTGGCGAAATTGCTTGCTTTCGCACCTCTTTTGGATTGGCGAA
ATTGCTTGCTTTCGCACCTATATTACAAGCAATGTACAGAAATGAACTCTATTACAAATAAAGAG
TACTCATTATGAACATAACAAATATCTTTGAGATCTGGGAATTGCTTATGCCAAAGCATCATATA
GAATCTTTTGGATTGGCGGAATTGCTTGCTTTCGCACCTATATTACAAGCAATGTACAGGAATGA
ACTCTATTACGGTTCGTGAATTTATGTACTCATTATGAACATAACAAATATCTTTGAGATTGGCA
AAATTGCTTATCAGAAATCATATATAATCTCTTGGATCGGCGGAA
Found at i:311952 original size:35 final size:35
Alignment explanation
Indices: 311906--311972 Score: 134
Period size: 35 Copynumber: 1.9 Consensus size: 35
311896 TGATCTTGGG
311906 TTGGATTGGCGAAATTGCTTGCTTTCGCACCTCTT
1 TTGGATTGGCGAAATTGCTTGCTTTCGCACCTCTT
311941 TTGGATTGGCGAAATTGCTTGCTTTCGCACCT
1 TTGGATTGGCGAAATTGCTTGCTTTCGCACCT
311973 ATATTACAAG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 32 1.00
ACGTcount: A:0.15, C:0.22, G:0.24, T:0.39
Consensus pattern (35 bp):
TTGGATTGGCGAAATTGCTTGCTTTCGCACCTCTT
Left flanking sequence: Indices 311406 -- 311905
AAATCCAGAAACAGGAGGAGAGGTTCGAAGAAAACAAATCCTAGCTAGGCCAGAGGATCCTCCTG
ACTCTTCTGCTGGTGAACCAAAAACCGACCGCAAGGCTTCGCTCGCCCTGCTCTGCCTGACCTAA
AGAATCGTCCTGCTCTGCCGGGCGGCGTAAAGAATCTTGTTATAATCTTGTTCCTGATCCCACAC
TAGTTCCGAAGAGTGCCTTCAACTCTGTCTGGATAGGGTAGCCTCTTTCATCAAGAATTTAATCT
TTTTCTCTCTTTTGAAAAAACAAATCTCATGCTCCGAAAAGGTCGGAGCGGTGCATGGCCTTCAC
TATTTGTTCATTAAGATTTGTTCATTAATTAATATTGTTTTTTCTGGGCGCTATGGTAAGACATG
AAAACACCCGATCCCATTCCGACCTCGATATGTGAAATCGTCTTACGCCATATGTACTGAAAGAT
TTCGGGAGACATGGTTCAAGCCCGGACAAAGCACTTGATCTTGGG
Right flanking sequence: Indices 311973 -- 312472
ATATTACAAGCAATGTACAGAAATGAACTCTATTACAAATAAAGAGTACTCATTATGAACATAAC
AAATATCTTTGAGATCTGGGAATTGCTTATGCCAAAGCATCATATAGAATCTTTTGGATTGGCGG
AATTGCTTGCTTTCGCACCTATATTACAAGCAATGTACAGGAATGAACTCTATTACGGTTCGTGA
ATTTATGTACTCATTATGAACATAACAAATATCTTTGAGATTGGCAAAATTGCTTATCAGAAATC
ATATATAATCTCTTGGATCGGCGGAATTGCTTATGCCAAAGCATCATATATAAGCAATGTACATG
AATTCACTCTGTTACAGTTCGTGAATAAAGAGTACTCAATTGTTGTTCATAACAAATATCTTTGA
GATTGGCGAAATTGCTTGGCTAAAAAGCCTCATATATAAGCAATGTACAGGAATGAACTCTATTA
CGGTTCGTGAACAAAGAGTACTCATTATGAACATAACAAATATCT
Found at i:312157 original size:150 final size:151
Alignment explanation
Indices: 311937--312264 Score: 443
Period size: 150 Copynumber: 2.2 Consensus size: 151
311927 CTTTCGCACC
*
311937 TCTTTTGGATTGGCGAAATTGCTTGCTTTCGCACCTATATTACAAGCAATGTACAGAAATGAACT
1 TCTTTTGGATTGGCGGAATTGCTTGCTTTCGCACCTATATTACAAGCAATGTACAGAAATGAACT
*
312002 CTATTAC-AAAT-AA-AGA-GTACTCATTATGAACATAACAAATATCTTTGAGATCTGG-GAATT
66 CTATTACGAAATGAATAGATGTACTCATTATGAACATAACAAATATCTTTGAGAT-TGGAAAATT
312062 GCTTATGCCA-AAGCATCATATAGAA
130 GCTTAT--CAGAA--ATCATATAGAA
*
312087 TCTTTTGGATTGGCGGAATTGCTTGCTTTCGCACCTATATTACAAGCAATGTACAGGAATGAACT
1 TCTTTTGGATTGGCGGAATTGCTTGCTTTCGCACCTATATTACAAGCAATGTACAGAAATGAACT
*** **
312152 CTATTACGGTTCGTGAATTTATGTACTCATTATGAACATAACAAATATCTTTGAGATTGGCAAAA
66 CTATTAC-G-AAATGAATAGATGTACTCATTATGAACATAACAAATATCTTTGAGATTGG-AAAA
*
312217 TTGCTTATCAGAAATCATATATAA
128 TTGCTTATCAGAAATCATATAGAA
* *
312241 TCTCTTGGATCGGCGGAATTGCTT
1 TCTTTTGGATTGGCGGAATTGCTT
312265 ATGCCAAAGC
Statistics
Matches: 158, Mismatches: 11, Indels: 14
0.86 0.06 0.08
Matches are distributed among these distances:
150 70 0.44
153 1 0.01
154 34 0.22
155 6 0.04
156 37 0.23
157 10 0.06
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.34
Consensus pattern (151 bp):
TCTTTTGGATTGGCGGAATTGCTTGCTTTCGCACCTATATTACAAGCAATGTACAGAAATGAACT
CTATTACGAAATGAATAGATGTACTCATTATGAACATAACAAATATCTTTGAGATTGGAAAATTG
CTTATCAGAAATCATATAGAA
Left flanking sequence: Indices 311437 -- 311936
AAACAAATCCTAGCTAGGCCAGAGGATCCTCCTGACTCTTCTGCTGGTGAACCAAAAACCGACCG
CAAGGCTTCGCTCGCCCTGCTCTGCCTGACCTAAAGAATCGTCCTGCTCTGCCGGGCGGCGTAAA
GAATCTTGTTATAATCTTGTTCCTGATCCCACACTAGTTCCGAAGAGTGCCTTCAACTCTGTCTG
GATAGGGTAGCCTCTTTCATCAAGAATTTAATCTTTTTCTCTCTTTTGAAAAAACAAATCTCATG
CTCCGAAAAGGTCGGAGCGGTGCATGGCCTTCACTATTTGTTCATTAAGATTTGTTCATTAATTA
ATATTGTTTTTTCTGGGCGCTATGGTAAGACATGAAAACACCCGATCCCATTCCGACCTCGATAT
GTGAAATCGTCTTACGCCATATGTACTGAAAGATTTCGGGAGACATGGTTCAAGCCCGGACAAAG
CACTTGATCTTGGGTTGGATTGGCGAAATTGCTTGCTTTCGCACC
Right flanking sequence: Indices 312265 -- 312764
ATGCCAAAGCATCATATATAAGCAATGTACATGAATTCACTCTGTTACAGTTCGTGAATAAAGAG
TACTCAATTGTTGTTCATAACAAATATCTTTGAGATTGGCGAAATTGCTTGGCTAAAAAGCCTCA
TATATAAGCAATGTACAGGAATGAACTCTATTACGGTTCGTGAACAAAGAGTACTCATTATGAAC
ATAACAAATATCTTTGAGATTGGCGGAATTGCTTATGCCAAAGCATATATAAGCAATATACTCTT
TTTCACTCTATTACAGTTCGTGAACCAGAGTACTCATTTGTTCTTCCAGAAAAGAGGCAAGATTT
GTCATCTTCCTCTTCCGGAAGATTCCTCTTTTGATGACAAATCTGAGGAAGATAAGGAAAAGGTG
GAGGAGGAAGAGGTAATGATGGTGGTTTTTGAGGATGTCAATACTAAAAAAAAAGAGTTTGATCC
TGGCTCAGAATGAACGCTAGCTATATGCTTAACACATGCAAGTCG
Found at i:312292 original size:154 final size:155
Alignment explanation
Indices: 311967--312379 Score: 447
Period size: 154 Copynumber: 2.7 Consensus size: 155
311957 GCTTGCTTTC
*
311967 GCACCTATATTACAAGCAATGTACAGAAATGAACTCTATTACA-------AATAAAGAGTACTCA
1 GCACCTATATTACAAGCAATGTACAGGAATGAACTCTATTACAGTTCGTGAATAAAGAGTACTCA
*
312025 TTATGAACATAACAAATATCTTTGAGATCTGG-GAATTGCTTATGCCAAAGCATCATATAGAATC
66 TTATGAACATAACAAATATCTTTGAGAT-TGGCAAATTGCTTAT-CCAAA-CATCATATAGAATC
* * ****
312089 TTTTGGATTGGCGGAATTGCTTGCTTTC
128 TCTTGGATCGGCGGAATTGCTTGCCAAA
* ** *
312117 GCACCTATATTACAAGCAATGTACAGGAATGAACTCTATTACGGTTCGTGAATTTA-TGTACTCA
1 GCACCTATATTACAAGCAATGTACAGGAATGAACTCTATTACAGTTCGTGAATAAAGAGTACTCA
*
312181 TTATGAACATAACAAATATCTTTGAGATTGGCAAAATTGCTTAT-CAGAA-ATCATATATAATCT
66 TTATGAACATAACAAATATCTTTGAGATTGGC-AAATTGCTTATCCA-AACATCATATAGAATCT
312244 CTTGGATCGGCGGAATTGCTTATGCCAAA
129 CTTGGATCGGCGGAATTGC-T-TGCCAAA
* * * ** *
312273 GCATC-ATA-TATAAGCAATGTACATGAATTCACTCTGTTACAGTTCGTGAATAAAGAGTACTCA
1 GCACCTATATTACAAGCAATGTACAGGAATGAACTCTATTACAGTTCGTGAATAAAGAGTACTC-
* **
312336 ATTGTTGTTCATAACAAATATCTTTGAGATTGGCGAAATTGCTT
65 ATT-ATGAACATAACAAATATCTTTGAGATTGGC-AAATTGCTT
312380 GGCTAAAAAG
Statistics
Matches: 221, Mismatches: 27, Indels: 23
0.82 0.10 0.08
Matches are distributed among these distances:
150 41 0.19
154 68 0.31
155 15 0.07
156 47 0.21
157 50 0.23
ACGTcount: A:0.35, C:0.16, G:0.17, T:0.32
Consensus pattern (155 bp):
GCACCTATATTACAAGCAATGTACAGGAATGAACTCTATTACAGTTCGTGAATAAAGAGTACTCA
TTATGAACATAACAAATATCTTTGAGATTGGCAAATTGCTTATCCAAACATCATATAGAATCTCT
TGGATCGGCGGAATTGCTTGCCAAA
Left flanking sequence: Indices 311467 -- 311966
CCTGACTCTTCTGCTGGTGAACCAAAAACCGACCGCAAGGCTTCGCTCGCCCTGCTCTGCCTGAC
CTAAAGAATCGTCCTGCTCTGCCGGGCGGCGTAAAGAATCTTGTTATAATCTTGTTCCTGATCCC
ACACTAGTTCCGAAGAGTGCCTTCAACTCTGTCTGGATAGGGTAGCCTCTTTCATCAAGAATTTA
ATCTTTTTCTCTCTTTTGAAAAAACAAATCTCATGCTCCGAAAAGGTCGGAGCGGTGCATGGCCT
TCACTATTTGTTCATTAAGATTTGTTCATTAATTAATATTGTTTTTTCTGGGCGCTATGGTAAGA
CATGAAAACACCCGATCCCATTCCGACCTCGATATGTGAAATCGTCTTACGCCATATGTACTGAA
AGATTTCGGGAGACATGGTTCAAGCCCGGACAAAGCACTTGATCTTGGGTTGGATTGGCGAAATT
GCTTGCTTTCGCACCTCTTTTGGATTGGCGAAATTGCTTGCTTTC
Right flanking sequence: Indices 312380 -- 312879
GGCTAAAAAGCCTCATATATAAGCAATGTACAGGAATGAACTCTATTACGGTTCGTGAACAAAGA
GTACTCATTATGAACATAACAAATATCTTTGAGATTGGCGGAATTGCTTATGCCAAAGCATATAT
AAGCAATATACTCTTTTTCACTCTATTACAGTTCGTGAACCAGAGTACTCATTTGTTCTTCCAGA
AAAGAGGCAAGATTTGTCATCTTCCTCTTCCGGAAGATTCCTCTTTTGATGACAAATCTGAGGAA
GATAAGGAAAAGGTGGAGGAGGAAGAGGTAATGATGGTGGTTTTTGAGGATGTCAATACTAAAAA
AAAAGAGTTTGATCCTGGCTCAGAATGAACGCTAGCTATATGCTTAACACATGCAAGTCGAACGT
TGTTTTCGTCCTTACGTGTTGAAGGTTGTCGAACGCCGCGTAGGGCGTTCGGGGCAATAAAAGGT
TATCGAACGGCGCTACGGGCATTCGGGAGAGAATAAAGATTGTTT
Found at i:312401 original size:116 final size:114
Alignment explanation
Indices: 312270--312493 Score: 331
Period size: 116 Copynumber: 1.9 Consensus size: 114
312260 TGCTTATGCC
* ** * *
312270 AAAGCATCATATATAAGCAATGTACATGAATTCACTCTGTTACAGTTCGTGAATAAAGAGTACTC
1 AAAGCATCATATATAAGCAATGTACAGGAATGAACTCTATTACAGTTCGTGAACAAAGAGTACTC
* **
312335 AATTGTTGTTCATAACAAATATCTTTGAGATTGGCGAAATTGCTTGGCTAA
66 -ATT-ATGAACATAACAAATATCTTTGAGATTGGCGAAATTGCTTGGCTAA
* *
312386 AAAGCCTCATATATAAGCAATGTACAGGAATGAACTCTATTACGGTTCGTGAACAAAGAGTACTC
1 AAAGCATCATATATAAGCAATGTACAGGAATGAACTCTATTACAGTTCGTGAACAAAGAGTACTC
*
312451 ATTATGAACATAACAAATATCTTTGAGATTGGCGGAATTGCTT
66 ATTATGAACATAACAAATATCTTTGAGATTGGCGAAATTGCTT
312494 ATGCCAAAGC
Statistics
Matches: 97, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
114 36 0.37
115 3 0.03
116 58 0.60
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (114 bp):
AAAGCATCATATATAAGCAATGTACAGGAATGAACTCTATTACAGTTCGTGAACAAAGAGTACTC
ATTATGAACATAACAAATATCTTTGAGATTGGCGAAATTGCTTGGCTAA
Left flanking sequence: Indices 311770 -- 312269
TTTTCTGGGCGCTATGGTAAGACATGAAAACACCCGATCCCATTCCGACCTCGATATGTGAAATC
GTCTTACGCCATATGTACTGAAAGATTTCGGGAGACATGGTTCAAGCCCGGACAAAGCACTTGAT
CTTGGGTTGGATTGGCGAAATTGCTTGCTTTCGCACCTCTTTTGGATTGGCGAAATTGCTTGCTT
TCGCACCTATATTACAAGCAATGTACAGAAATGAACTCTATTACAAATAAAGAGTACTCATTATG
AACATAACAAATATCTTTGAGATCTGGGAATTGCTTATGCCAAAGCATCATATAGAATCTTTTGG
ATTGGCGGAATTGCTTGCTTTCGCACCTATATTACAAGCAATGTACAGGAATGAACTCTATTACG
GTTCGTGAATTTATGTACTCATTATGAACATAACAAATATCTTTGAGATTGGCAAAATTGCTTAT
CAGAAATCATATATAATCTCTTGGATCGGCGGAATTGCTTATGCC
Right flanking sequence: Indices 312494 -- 312993
ATGCCAAAGCATATATAAGCAATATACTCTTTTTCACTCTATTACAGTTCGTGAACCAGAGTACT
CATTTGTTCTTCCAGAAAAGAGGCAAGATTTGTCATCTTCCTCTTCCGGAAGATTCCTCTTTTGA
TGACAAATCTGAGGAAGATAAGGAAAAGGTGGAGGAGGAAGAGGTAATGATGGTGGTTTTTGAGG
ATGTCAATACTAAAAAAAAAGAGTTTGATCCTGGCTCAGAATGAACGCTAGCTATATGCTTAACA
CATGCAAGTCGAACGTTGTTTTCGTCCTTACGTGTTGAAGGTTGTCGAACGCCGCGTAGGGCGTT
CGGGGCAATAAAAGGTTATCGAACGGCGCTACGGGCATTCGGGAGAGAATAAAGATTGTTTTATT
CCTCTCTTAGCTGCTCCACTGGCTACGCCAGTGGATGCGGCCTCTATTTGTCAAATGGAGCATTG
AAGCGCCTGACGAGGGGAACAGTTGAAAACGAAGTGGCGAACGGG
Found at i:314228 original size:18 final size:18
Alignment explanation
Indices: 314205--314239 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
314195 AACAATCTAA
314205 AAGCTGCTCCTTTTTTTC
1 AAGCTGCTCCTTTTTTTC
314223 AAGCTGCTCCTTTTTTT
1 AAGCTGCTCCTTTTTTT
314240 TTGTTTTACA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.11, C:0.26, G:0.11, T:0.51
Consensus pattern (18 bp):
AAGCTGCTCCTTTTTTTC
Left flanking sequence: Indices 313705 -- 314204
GCCCAGCTAACGCGTTAAACACTCCGCCTGGGGAGTACGGTCGCAAGACTGAAACTCAAAGGAAT
TGACGGGGGCCTGCACAAGCGGTGGAGCATGTGGTTTAATTCGATACAACGCGCAAAACCTTACC
AGCCCTTGACATATGAACCAGTGTGCTTGTCCTTAACGGGATGGTACGAAAATTTATACAGGTGC
TGCATGGCTGTCGTCAGCTCGTGTCGTGAGATGTTTGGTTAAGTCCTGTAACGAGCGCAACCCTC
GTTTTGTGTTGCTAAGAATTAGTATTTCAGACGGCTGAGATAGCCACTTTTTGGATACTACCTAC
CGGGAAACTTTTGTAAGGGCCTCGTCAGCTCTGCTGCCAAAGTTTTTTTTTCTAGGGCCGCCCCC
CTAATAATTCATGATATGAGGGCCGTCACCCTCGTTCCACCCTCATGATTTGTTAGGGCCGCCAC
CCTAAGAGTTGCTCGGGAGGTTGGTACTCCAAAATAACAATCTAA
Right flanking sequence: Indices 314240 -- 314739
TTGTTTTACACTTGTGGCTATCTTGGTAGTCTATTAGAAAAGTCTGCACTCACAAAAGACTGCCT
GTGATATACTGGAGGAAGGTGGGGATGACGTCAAGTCCGCATGGCCCTTATGGGCTGGGCTACAC
ACGTGCTACAATGGCAATTACAATAGGAAGCAAGGCTGCAAGGCGGAGCGAATCCAGAAAGATTG
CCTTAGTTCGGATTGTTCTCTGCAACTCGAGAACATGAAGTTGGAATCGCTAGTAATCGCGGATC
AGCATGCCGCGGTGAATACGTACTCGGGCCCTGTACACACCGCCCGTCACACCATGGGAATTGGT
TTCGCCCGAAGCATCAGACCGAAAATCACCCATTACTTTAGTGTTCCACGCCGCCGTTGAGTGTG
GCCCACTCACCGTAATTGGTGGTCTTCGCGGATACCACGGTGGGGTCATTGACTGAGGTGAAGTC
GTAACAAGGTAGCCGTAGGGGAACCTGCGGCTGGATTGAATCCTT
Found at i:320158 original size:21 final size:21
Alignment explanation
Indices: 320115--320158 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 21
320105 ATGGAAAGCC
** * *
320115 AAGCCAAGTTCACTTTATTAA
1 AAGCCAAGTGAACTTGATGAA
320136 AAGCCAAGTGAACTTGATGAA
1 AAGCCAAGTGAACTTGATGAA
320157 AA
1 AA
320159 ATGAATCAGC
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.43, C:0.16, G:0.16, T:0.25
Consensus pattern (21 bp):
AAGCCAAGTGAACTTGATGAA
Left flanking sequence: Indices 319615 -- 320114
TTTGCTATTTCAATTCCTAGTGTTTCGAGTCCAAAACAAATCTTAATTTATAATGAAGAAATTTT
GGTAGCTTTAAGTTTGGTGGTTTTTGTCTCATATTTAGTCAAAAAACTTTTCAACTTTCAAAGCG
ACTTTGGAGGCGAGAAGCGAAGCTATTCCTTCAGAGTTACAGCATTTGATGAGTTCTCAAGAAGC
TTTGTGGTCCGGGTTACAGAAACAGCATGAATTACGTAGTATCAGCTTGCGTTCAAGCACGCAAA
TGATTGGAGAATTATGTATAAATGATATGGTTACGCGCTGTGCACCTAAGTGCAAAACCGTGCAA
GCTTCGTTATGCCAACCACAGGCTTTTTACTACGCTTCTTCGAACCTCTCTCGTTTTACGCCGGC
TCCAGAAAAAAAAAGAGTACGCGCGGTGCACACCAACCAAAGACCTATGCCCAACCTGCTCCATG
AATACCGTGAGAACTGCCGTAGGGCAGGAAAGGCCATGGAAAGCC
Right flanking sequence: Indices 320159 -- 320658
ATGAATCAGCACTTGGTTTGTTAGATTATGAAAATCTGCCCACTTGGAGACTCTTGCGAATACGC
CATAACTTTGGGCAAATCAAATAGTGCGATCGAGTGGAAAAACCAGTTTATCGATTACCTCGAAT
CGTGCTTTTCCAACCTACTCCAACCTCTATAATTTCGCGGCCGCGGAATTAAGGAAGGTGAGTTT
TCCTACTCTTCAACCACACATCCCTTCTCAAAGAACCTTTCTGATCCAGAGCAGAAAGCCACTTC
ACTTACCAATGATATCAAAAAGCACGATGCAGTGTTTAGTAACACATTAGAACTTTGTGAAGAAG
CAGCCGCAAAACTGAATGGAAACCCGTTGGATCTTTGGGACGAATAAACTCTTCTTAAAACCCAT
CTCCAATCACTACTTAAGCTCTCAGAGAAAAACGAGCAATATTTTGAATTGTTCACGGCTGAAAT
GTCTAAAGTGAGAATAGGGTGAACTCTGTTTCTCTAGGAGCCTCG
Found at i:320730 original size:30 final size:30
Alignment explanation
Indices: 320694--320753 Score: 111
Period size: 30 Copynumber: 2.0 Consensus size: 30
320684 TAATGGTGCC
*
320694 TCCGGCCTCGCCGCCGCTGGGGAGTACGGG
1 TCCGGCCTCGCCGCCGCTGGGAAGTACGGG
320724 TCCGGCCTCGCCGCCGCTGGGAAGTACGGG
1 TCCGGCCTCGCCGCCGCTGGGAAGTACGGG
320754 ACCGACACGG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.08, C:0.37, G:0.42, T:0.13
Consensus pattern (30 bp):
TCCGGCCTCGCCGCCGCTGGGAAGTACGGG
Left flanking sequence: Indices 320194 -- 320693
CTGCCCACTTGGAGACTCTTGCGAATACGCCATAACTTTGGGCAAATCAAATAGTGCGATCGAGT
GGAAAAACCAGTTTATCGATTACCTCGAATCGTGCTTTTCCAACCTACTCCAACCTCTATAATTT
CGCGGCCGCGGAATTAAGGAAGGTGAGTTTTCCTACTCTTCAACCACACATCCCTTCTCAAAGAA
CCTTTCTGATCCAGAGCAGAAAGCCACTTCACTTACCAATGATATCAAAAAGCACGATGCAGTGT
TTAGTAACACATTAGAACTTTGTGAAGAAGCAGCCGCAAAACTGAATGGAAACCCGTTGGATCTT
TGGGACGAATAAACTCTTCTTAAAACCCATCTCCAATCACTACTTAAGCTCTCAGAGAAAAACGA
GCAATATTTTGAATTGTTCACGGCTGAAATGTCTAAAGTGAGAATAGGGTGAACTCTGTTTCTCT
AGGAGCCTCGGCGTTGCACCGAATTTAAGCAGCAATAATGGTGCC
Right flanking sequence: Indices 320754 -- 321253
ACCGACACGGCCCCATATTCCCAAGTTTGTCCTCCAAGAAGAGGTATCGGGCTCAGAAGAGCCGA
GGGAGAATAGAGAGATTCTCCTGACATTTTCGCGGTATTTATGGAAAATCCTCTTAGAGTCGTTG
GGATTATAACTGGGAACTTTGCTTCACTGGGAGCTTTGGCAAGCACCATGGGTGGCGTTATGTAC
ACGCACTCCTTGCCGGGAGGTGGAACACTTCCTAGTTCAGGCTTGGAAATGATTTTATTATATAC
CATGGTGCGCCCGAAGACACTTACTCCGACGAGGAGTGTAAGTGACATCTCAGGCTAGGTCACGC
GCTCAACCAGGGTGCACCCCCGGCAGCAGCAGGTGTAAATCGAGGCAGAATGCCCCCACTAGCCT
CGAGGGAGCAGAAGGTACGGTTAGGATAACGCACGTAATACTACGCATTTCCTGACGCAGATAGG
CCCTCCTGTCCCAAGCAGAATATAGTGGCAGGGGCACGACGAGCC
Found at i:329103 original size:40 final size:40
Alignment explanation
Indices: 329011--329108 Score: 103
Period size: 39 Copynumber: 2.4 Consensus size: 40
329001 AAAAGCATCG
* *
329011 AACATTCAAAGAAAAAAACTCATGCAGAAGAAGCAAGAATTG
1 AACATTC-AA-AAAAAAACTCATGCAGAAGAAGAAAGAATTA
*
329053 AACA-TAAAAAAAAAACTCATGCAGAAAGCAA-AAAG-ATTA
1 AACATTCAAAAAAAAACTCATGCAG-AAG-AAGAAAGAATTA
329092 AACATTCAAAAACAAAA
1 AACATTCAAAAA-AAAA
329109 ATTAAACATT
Statistics
Matches: 48, Mismatches: 4, Indels: 9
0.79 0.07 0.15
Matches are distributed among these distances:
39 23 0.48
40 14 0.29
41 7 0.15
42 4 0.08
ACGTcount: A:0.61, C:0.14, G:0.11, T:0.13
Consensus pattern (40 bp):
AACATTCAAAAAAAAACTCATGCAGAAGAAGAAAGAATTA
Left flanking sequence: Indices 328511 -- 329010
CCCGAAGAATATGATTTCCTTCCGGAATATGAAGAAGATGATCGCAATACTCGAGGTACTTGAGT
TCGACGCCGTGAAAAATCTTGCTGTTCAACATGAGGATTTAAATACACTGAAGAGTATAAAAGAC
TAAATTAAACCAAATATCGAACGGGTAAAAAAACGCAAAGCTACGCCATGGCATTTAGTGACTAC
TTATTCCCTAAGGAGAAGAGCTTAATCTTTTGCGAGGTAAAACTCACACTACTGATGATACTGAA
AAAAATTGAATATTAGTGAGATGGGATATTTATTCGAACCTCTCCCCCCTCCCCTACGGTTGAGT
GCTTTTTAAAAGTCCTTTGGTCGAGTCCCCCCCAGGCGGCTGGGCCCTCTTTATTCGGGAAACCG
CAAAGCTTTTTCCGAATCATTTTGTAGAAAATTTGTTTGTAATTAGTAAACGGATGAGATGGATC
ATAAAAAAACGAAATCGATGATAGCAAACAACACCAAAAGCATCG
Right flanking sequence: Indices 329109 -- 329608
ATTAAACATTCGGGAAAAACAAAAATTAAACATTCAGAAAAAACTCAGGAAACAAAGAAAGCATG
GTATTGCCTATAGCTATTCAACTCCTAGTAATACCATTGTTACTGTAACAGATTATAAGGGAAAT
ACCAAAACAGGGTCCTCCTCAGGTTTTGTGGGGTTTACAGGATCTCGTCGCTCAACCAAGTATGC
TGCTCGTGCAACAGCGGAACATGTTGCGCGAGCTGCCATTCAACCAGGAATTGAGTCAGTTGAAG
TTAGAATAAAAGGAGGATTTGGTATTGGAAAGAGGAAATATTTGCTGCGTGGTTTAAAACTAGGA
GGTCTTATTATTACCAAAATTCGCGATGTAACCCCAACGCCACATAATGGATGCCGACCCCCCAA
AAAACGTCGTGTTTAAATATCATCATAAAATTCTCCATTTTCAATGACTTGACAACACGTAATTA
AATTGAAAGATCTTGATTGCTTCACCTATCTTACCTCGGGAGATT
Found at i:329152 original size:24 final size:22
Alignment explanation
Indices: 329083--329150 Score: 93
Period size: 24 Copynumber: 3.0 Consensus size: 22
329073 GCAGAAAGCA
329083 AAAAGATTAAACATTC-AAAAAC
1 AAAA-ATTAAACATTCGAAAAAC
329105 AAAAATTAAACATTCGGGAAAAAC
1 AAAAATTAAACATTC--GAAAAAC
329129 AAAAATTAAACATTCAGAAAAA
1 AAAAATTAAACATTC-GAAAAA
329151 ACTCAGGAAA
Statistics
Matches: 42, Mismatches: 1, Indels: 5
0.88 0.02 0.10
Matches are distributed among these distances:
21 11 0.26
22 4 0.10
23 6 0.14
24 21 0.50
ACGTcount: A:0.63, C:0.12, G:0.07, T:0.18
Consensus pattern (22 bp):
AAAAATTAAACATTCGAAAAAC
Left flanking sequence: Indices 328583 -- 329082
CGTGAAAAATCTTGCTGTTCAACATGAGGATTTAAATACACTGAAGAGTATAAAAGACTAAATTA
AACCAAATATCGAACGGGTAAAAAAACGCAAAGCTACGCCATGGCATTTAGTGACTACTTATTCC
CTAAGGAGAAGAGCTTAATCTTTTGCGAGGTAAAACTCACACTACTGATGATACTGAAAAAAATT
GAATATTAGTGAGATGGGATATTTATTCGAACCTCTCCCCCCTCCCCTACGGTTGAGTGCTTTTT
AAAAGTCCTTTGGTCGAGTCCCCCCCAGGCGGCTGGGCCCTCTTTATTCGGGAAACCGCAAAGCT
TTTTCCGAATCATTTTGTAGAAAATTTGTTTGTAATTAGTAAACGGATGAGATGGATCATAAAAA
AACGAAATCGATGATAGCAAACAACACCAAAAGCATCGAACATTCAAAGAAAAAAACTCATGCAG
AAGAAGCAAGAATTGAACATAAAAAAAAAACTCATGCAGAAAGCA
Right flanking sequence: Indices 329151 -- 329650
ACTCAGGAAACAAAGAAAGCATGGTATTGCCTATAGCTATTCAACTCCTAGTAATACCATTGTTA
CTGTAACAGATTATAAGGGAAATACCAAAACAGGGTCCTCCTCAGGTTTTGTGGGGTTTACAGGA
TCTCGTCGCTCAACCAAGTATGCTGCTCGTGCAACAGCGGAACATGTTGCGCGAGCTGCCATTCA
ACCAGGAATTGAGTCAGTTGAAGTTAGAATAAAAGGAGGATTTGGTATTGGAAAGAGGAAATATT
TGCTGCGTGGTTTAAAACTAGGAGGTCTTATTATTACCAAAATTCGCGATGTAACCCCAACGCCA
CATAATGGATGCCGACCCCCCAAAAAACGTCGTGTTTAAATATCATCATAAAATTCTCCATTTTC
AATGACTTGACAACACGTAATTAAATTGAAAGATCTTGATTGCTTCACCTATCTTACCTCGGGAG
ATTTAACCCTTGACAGTCCTGATAAACTATTTGGTGATTTACGAA
Found at i:334109 original size:20 final size:20
Alignment explanation
Indices: 334084--334123 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
334074 CATGAATAAA
*
334084 TCTTATGTGTGTTCCTCGGG
1 TCTTATGTGTGTTACTCGGG
334104 TCTTATGTGTGTTACTCGGG
1 TCTTATGTGTGTTACTCGGG
334124 ATAGATTACG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.07, C:0.17, G:0.30, T:0.45
Consensus pattern (20 bp):
TCTTATGTGTGTTACTCGGG
Left flanking sequence: Indices 333584 -- 334083
CGCCCCGGTGACTTATTCCGAATAAACCCGCCCGCCACCTTGTGAAGAAAATTTTACTCCTCTCG
ACTTTTTCGTTCTCCGTTACGACACTGAACGGAATGGCTAACTTTAGTTATCTGGGGTTATTTAT
GGGCCAAAACAAAGGAGAAAAAAAGAATGTTGTAGAACTAGTTGTATAACTCAACGTTCTACACC
AAGGGCCGATACTAGATCAATTTACGTATTTGACGCAATTTGTTCGGTTATGTGTGTTTTATATG
ACTTTTGATGTTTCATCACATAATGATGGATTACCTTTTACAAGTCGAATTCTCTCTCTCTACGA
AAACAATTGATTTCGCCCATTGCGCTACCTCAAATTGGCAACTCCACTTTTTTTTCGGCGTGGTT
TTTCCCTTTAACATCAGTGTATCCCATCCGTACCCAAGTGTATCTGGAGCATCCAAGTGGTGTAA
TTTCCTGAAAGCTTAAATGCTCACTCGGGGCCACGCATGAATAAA
Right flanking sequence: Indices 334124 -- 334623
ATAGATTACGTGTATAACCAGTGTAATCAAAAAAACACACATTTTCGGTCCTTATACTTCTCGTA
CCTGTTTCTTCTAGCTAGGAGTCAAATCACAGCTCCGAACACCCTCTCTCGTGGAGCAAAGAGGG
GTTCCTTCCTTAGTGTGGGGGGGGGGTTGCCGAGCAGCCCATACCAACCGAAACCTTAGTGATGA
TAAAACCAGGGAGACCTTATTGGAATGGCCAAGGAGGAAGGAACCTGCGATAAGCAAGACCTCAG
GCAAAGGCTGGAAGAAGCTCTTTACCCGGGCGCCTCGAGCAATCACTTGGTTTTTTTAGATTGCA
ATCCCCGGAGTTTTCATCCAAAGATTTCATAAGTGTAGAAACTCCGTTATTCAATGGACATCTGA
TGAAATCGAACAAATAGCCAAGCAAAAAACATTCCTAGAGGGCAGCGAAAAATATCCATATTTGG
GAGAGGCACCCATCCAATAAACCGAGTAATTGTAAAATCTATGCG
Found at i:343857 original size:15 final size:16
Alignment explanation
Indices: 343817--343860 Score: 54
Period size: 15 Copynumber: 2.7 Consensus size: 16
343807 AAGGCCGGTT
343817 CCGGAGGAAATGACTCGG
1 CCGGAGGAAATGA--CGG
*
343835 CTGGAGGAAATGA-GG
1 CCGGAGGAAATGACGG
343850 CCGGAGGAAAT
1 CCGGAGGAAAT
343861 TACACAAATT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
15 12 0.50
18 12 0.50
ACGTcount: A:0.32, C:0.16, G:0.41, T:0.11
Consensus pattern (16 bp):
CCGGAGGAAATGACGG
Left flanking sequence: Indices 343317 -- 343816
TGACTGGAAAACGCTCAATCGGTGAAGGATCGGAGATGCAAACAAGCATGATTGAAAAGAAACAA
AATAAGCTTTTGGCTAGAATTCAAGAAACAAGGCATGGCTTGGATAATTTGAACGATTTGGAGGA
ACTCCACCAAATAACAAACTGTATCGAAGGCATGAGATGTGATATTAGTTACCGCGAAAAACACC
TAACACATCGCCAAAAAATGGACCTTGAGAAAGCCTGAATTTGATTGTTTGCTTAGTGTGATTAA
GAGGCGATAGTTTGAGGTTGAAAACCTCCTAGCCACTTTGAAAAACTAATCTTTCTGCAATTTCG
GACGGAGGAACCTACAGAACAAAAAGCTTTCGTTCCGGACAACTTGTATTCTCCGGAGGCGGCGG
ACCAGATACTTTATCCTCGGTGCGGCGAAAGCTGTAAAATATTTCAGAGGCTGAAGGTATTTTAC
CGGAGGAAATGGAAGGAATACGAGGGCTACGAAGAAAGGCCGGTT
Right flanking sequence: Indices 343861 -- 344360
TACACAAATTCCGGGCTATACCTCCGTTCCGGAAATACCTTTTAGACCTTCTCTTCTCCACTAGA
TAAAATATCTTCGAGAATCTCTTTTTTGTTGAAAAAATTAGTCAAAAATATCTTTTTTCTTTTTT
TGAGATATTTTTAGTTATTCGATAACCGCTTCGCTGCAAGCTACCAGCAGTCAGCAGGACGCTTC
ACTACCTAAGGCAGCAAACATAGCAGCACCTACCAGCGGATCCTTCTAGAGAAATCAAGTGCCCC
CGAAAGATAAAGTCTATCTTGTTCCTTCGGTTGAGAAGATCATATGGTCCCTATTCCAATAGTTT
GGTTTTTAGAAACATTCTTCTAGTATAGTAGGTGAGAACTTTCCTTTGTAAATGATTGAATAAGC
GTATTGACCATATAATAGGTCGATACGAAAGCAAATAGTGGGCCACGGTTCGACATTCGTAACTA
GGTTCAATTTAGAGTACTTCCAATTTTTTTCTCTGCTCAGAGCTA
Found at i:346905 original size:33 final size:34
Alignment explanation
Indices: 346868--346934 Score: 127
Period size: 33 Copynumber: 2.0 Consensus size: 34
346858 CGAGGGGGTA
346868 GGTGGATGAAGGTTCGAATAAAACCCC-TTCGCG
1 GGTGGATGAAGGTTCGAATAAAACCCCTTTCGCG
346901 GGTGGATGAAGGTTCGAATAAAACCCCTTTCGCG
1 GGTGGATGAAGGTTCGAATAAAACCCCTTTCGCG
346935 ATAAAGGCGG
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
33 27 0.82
34 6 0.18
ACGTcount: A:0.27, C:0.21, G:0.30, T:0.22
Consensus pattern (34 bp):
GGTGGATGAAGGTTCGAATAAAACCCCTTTCGCG
Left flanking sequence: Indices 346368 -- 346867
CTATATTACTACCCTAAAGGTTGCGATGAACCATGAAACTAATTCTATATAATCGATGTAGCAAC
GCCTGCAACGGCTAATCCCAAGGCAGCCGCCGTAAAAAAAAAAGAGAGACGTATGGGGAACCATA
AGAGACTGAAACCCTTTCATATTCGGTAGAAAGAACATTTAAGTCCCCACATAGGCAAGGTCATA
AAGGTCAGGCTTACCACATTCGAGTAATAATAAAGGACATGAAGCTGAAAACCTGGAAATTGCAA
AGCAAAACGCTACATAGATGATAACTATGGCAAGGATAGCAACTGTAAATATAACAGCAGAAACT
AAAAATACCTCCAAAATCTCAAAAACGAGACCAATCAATGGTAAGAAAAACCTACTTGCAAAGAT
TGTATTAGGCCGCTTCTCCAATAGTATCTTTAACACGGCACTCATCACGTTAATTCTTCCTTTTT
ATTCCTCCGGTAGGAGTAGGTTGATGAGGGTTAACCGAGGGGGTA
Right flanking sequence: Indices 346935 -- 347434
ATAAAGGCGGGTGAAGGTTAACCGGTCCCCTTTGCGGCGGGCGGTCCCCCTTCACCCCTTCCTTC
GGGGCCAAAGCCCTATGGGTGGGCCACCAAGGATTCGAACCTACTCAATTCATTCATTCATTTTT
CTGAATTAGTGTAACCAATCCCTCCATCCATTGGCAATTATACAATCAAAAGCACCGGCACACAA
ACTCATTCTACCGAAATCCTGAAATTACACATGGACACCAACACTAAGACATATCAAAAGGCACC
AGTAACACAAGGTTCGAATAATTATAACTTTCCTGCCTGCACACTTTTTATCCCAACACCCCGCC
GCCATTCAAGAAGGGACCGGCCAAGGAGGTTCATATGGACGAGCACGTCTGTGAGTACGGCCGCT
CGAGGAGGTATCGGGCAAGGTTTGCGCAACCTCATCCTCTGATATCTGGAGTGGTTCATAATCAA
TATACTTATGTGGCCGGAGTGTACCATTACAAAACATAATTGCCA
Found at i:348083 original size:24 final size:24
Alignment explanation
Indices: 348055--348102 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
348045 CGCTCCTGGG
348055 ACTGTGGTTCCTCTTTATTGATAA
1 ACTGTGGTTCCTCTTTATTGATAA
348079 ACTGTGGTTCCTCTTTATTGATAA
1 ACTGTGGTTCCTCTTTATTGATAA
348103 GCAGCTCTTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.21, C:0.17, G:0.17, T:0.46
Consensus pattern (24 bp):
ACTGTGGTTCCTCTTTATTGATAA
Left flanking sequence: Indices 347555 -- 348054
GTAGTGTGGATCCCGTTGTATTGTCCGTGGTGCCGTCGTATAGGTGCCAGCAGTATCCTTAGTAC
CATACTCGATCTCCGCCGAAGTTCCAAGACCTTGGTACCATACTTCGTGGAGATAGCAGTCAAAG
TAGTGCCAGACTTTGTCTCAGTCGAAGTTTCGGAATTGTGGAATATTGGTTGTAGCCCTTTCTGG
TGTTCTTCGCAATTTGGTAAATTCTTTTCCACAAAATGTGTATTGATGGTTGATTATTTTCTTGT
TCTTCGCTGTACGTCGTGCGTTCTCCACACAAGCATCATACCATGCTTGTTCAGCCGCCGCCGTC
TTCGGACTTCTTATCAAGTCTGCTATGCATTCTCCTCATTCTTGACGTGCCGCTGCATTATCTGC
GTTCACAGTTTCAACTCTTTTTTTCCACCATTCAACCTCCTGCATATCCAGTTCTCTTTGACGAA
TACGTTCTTGGGACTGTGGCTCTTATTTCCTTAGACGCTCCTGGG
Right flanking sequence: Indices 348103 -- 348602
GCAGCTCTTAGGACTGTAGCTCTTCATTCCTCATATGCTCTTGGGACTGTTGTTCCTCCGCCAGA
GCTGCTTTCTTTTGTTTCTCGTGTAGGGTCGGTACCCATCTTACTGGGGAGGGACAAGCACCTCC
CCCAAATCGTATGTGCAAGTTTTCCGCCGGCCTACGGTTATCCCTGTCGCTTGCTAGTTCTTCTT
TTATTTATGAAAGAAATGTTGAGTGAGTTTACCGGCAATTATCCACAAACTATTCCCCCCGGTGA
ATCTTTACGTGGCATTTGTGACTGGTATCTGCTTACGGTTGAGTTGGAGTCTTAGTTTTTTAAAT
ACTTTGACTTTCGATCGACTTAGGTGTTTTACATGGTGCATTTCCATCTTGTCCGGAAAGCCGCA
GATAATACAGGGGCTTTCTAGTGTCGAGTGGATTCGAATCTGGTATTGCAAAAAAAATCTTGAAG
GATCTGGCGATTCTTGTTCGATGAGCGCGAAATGATGGGAGGGGT
Found at i:349430 original size:25 final size:25
Alignment explanation
Indices: 349378--349448 Score: 79
Period size: 25 Copynumber: 2.8 Consensus size: 25
349368 TCTTTCGACC
* *
349378 GCCAACAATAACCAATCTATATACT
1 GCCAACAATAACCCATCTATAGACT
* * *
349403 GCCAACAATAACCCATTTATCGAGT
1 GCCAACAATAACCCATCTATAGACT
* *
349428 GCCAACAGTAACCCATATATA
1 GCCAACAATAACCCATCTATA
349449 ATAGCCCACA
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 38 1.00
ACGTcount: A:0.41, C:0.28, G:0.08, T:0.23
Consensus pattern (25 bp):
GCCAACAATAACCCATCTATAGACT
Left flanking sequence: Indices 348878 -- 349377
GGTTTCCCGGAACATACACCTCTTTCACCGAGGCGCGCAATGATTCGTGGCATGGGGGCATTCAA
ATGCAATACCCCGGCCCTATCTTCCAGCTGTCCCCTCTGGCTTTGACCCATTTGGCAACGGTTAC
GGGAAGCTGATTGAACGAGGGGTTCGAAAAATAGTGCAGTATTGCGACTTTTATGGGTGATTTTG
GTCTTTTCTATGCTGAGATCTAGTTTCAGACGATACCTCATTGAGAGATTTCGTTATTTATCTGG
AGTGCTACAAGCTTAAGGCCAAACAACCCTACAATCCAATTCCAATAGTCGTCTGCGTAATTGGA
GGTTGTGAATCTTGACTTCCACCAGGATTGAATGGGCGGGCCGCCTTCCACTCCGGCGGAACATT
CACGATAAACAACCCCTTTCAGTTTGAAAAAAATAACCTGATCTTAGTGGTATTTGCGGGTTGTG
CAGAATTCTGTAAATGGTAACAAGATACTTTTAATTCTTTCGACC
Right flanking sequence: Indices 349449 -- 349948
ATAGCCCACACACATGAAAATTTTCTTATGATTATAGGTACCGATTCTACGTTACTATGGTACTT
ATTCTTGCCTCGAAAAGTACAGAATAAGTACTTTTTGATCAATTTTAAGAGCGGGGATCCCGCCC
GACGAGGACCCAATTTCATTCATTACTTGCCTTACGAGCAATGGGGCCATGGGCCCGTTCGCATT
ACTACCTGGAATGGTGGACTGTAGTGTCATCATTCATTTTCTAGCCCATTTCAGTTGGGCCCTGA
TCTGTGGAGGCGGACCACGCTCTGTTTGGTTTAGATAAGGTGGCAGTCTGGCCTTTTCTTTTGCG
GAAAAGAGGCGCGTGTATCTACAGACTACCTGTGTGTATGCGGGGTTTTTACATGTCCACCCTTT
TCTAATATTGGTTTGTGAGTTCCTCACAAAATTTGTCTAGTGGATGTAGGTAGATGTTGGGGAGC
AAGGGTGAGATAACTCCGTGTGCAGGCACTCCTTCGATAGAGTTA
Found at i:359155 original size:25 final size:25
Alignment explanation
Indices: 359107--359155 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
359097 AGATTCGCTG
* *
359107 TTTAGCTTGGATAGCTTCGCTCAAT
1 TTTAGCTTGGATAGCTCCGATCAAT
359132 TTTAGCTAT-GATAGCTCCGATCAA
1 TTTAGCT-TGGATAGCTCCGATCAA
359156 GCTTTGCCTG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 20 0.95
26 1 0.05
ACGTcount: A:0.24, C:0.20, G:0.18, T:0.37
Consensus pattern (25 bp):
TTTAGCTTGGATAGCTCCGATCAAT
Left flanking sequence: Indices 358607 -- 359106
TCGAACCTTCAATAACCAGCGCGCAGTCCTTTCTTCGAACCTTGGCCGACACGCCGGCGCCGCAG
TCATACCTTGTAAGTTCATTTCCAAATTCGAGGGTAGCATAGATTTTTCTCCTGGTGGTGAACAA
GCGCAGTATGAAGAAGGAAATGGCGCTTCTTCAGTTCTTCCTGACTCAGCTCAAGTGTGAAAGCT
TATCCCATAGCCGCAGCAGGTCTACGTCCGGTAGTCAAGGCTCAATCGGGTGAGAGAGCGGAACC
CGTTCTTTGGCAGGGCCAGCTTTGCTCAAGCTCAGCAAATTGCTTGGCTCAAGCTTCGCTTGGTT
CGCTCTTTTTAAGCTTTGCGTTGCTTCGCGGGCAGCTTTGCTACAGCAGCCGGCTGGCAGCTTAG
AAAGGGCTAGTAAGCTTCACAGGCCTTCGCTACAGCAAAGCTGGCAGCTAGCTTATGAAAGAAAG
GGCTTTCTTCGAACCTCGCTGGCTTGCCTCGCTAAAGATTCGCTG
Right flanking sequence: Indices 359156 -- 359655
GCTTTGCCTGTAACTTCGCTGGCTATTATGGCTACAACAGTTGGTTATGCTACAGCAGCTTAGTC
CATTGCTTATTGCGGAGCTGCCAAGGGCGAGCTCTTCGCGCGACCTGCTGCTTGGCGGGCGGTAG
CTAAAATTCCTGCTTTGCGAGGTTTGGATAGCCCTAATAATAAGAAGGTTTTGCTTTTCATTTCG
CTTAAGTTTAGCTTTTAAGCTTTAATGGCTAGTCAGCTTCGACCCATAATTAAACAAACAAATTA
GAGCTATTGTTGGGCACAAACATGTTAAACCCACCGAACAATACAATAGACCTTGAAACATGAAA
AACAGATTGACGATGTAATACAAGCTGTTTATAAGCAAATAAAGAAGGATACACCACAAATAATG
CATACAAACAAAAAAAAACCTCCTATAATCAATTTTTTTTCGCGCCAAATAATGCATTTCAACCG
CCTTAGAAATAGTTTTTTGTATTTCATATTTTTTTCAGCTGAGTA
Found at i:361063 original size:20 final size:20
Alignment explanation
Indices: 361022--361065 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
361012 AGCGCAGGAA
*
361022 AAGCAAAGCATAGTATGGAG
1 AAGCAAAGCATAGTATGCAG
* *
361042 AAGCGAAGCATAGTATTCAG
1 AAGCAAAGCATAGTATGCAG
361062 AAGC
1 AAGC
361066 TTTTTGGCGA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.43, C:0.14, G:0.27, T:0.16
Consensus pattern (20 bp):
AAGCAAAGCATAGTATGCAG
Left flanking sequence: Indices 360522 -- 361021
ATTTTTCTTTTCGAAGTTGTACCACCATCCATTGATTTAGTAAATGCTTATCCATGCGCTAGGTT
CAATTCATCATTACGTATAATAGAAAACCTTGGGTAATAACGGACTTGAACCGCTGACTCTCTCG
GTGTAAACGAGGCACTCTACCAACTGAGCTAATTACCCTAATGTGCCGAATCATCAACTATCAAA
AAGCACGCCATGAGTGGTGTATTTCGGTGTTCATTTTTTATTGATCGCTTGATGCTTTATCTTAT
TCATTGCACATTACCCAGATTTATTGCTTCGCGCCTTGAGTTGCTGCGCCGCCGAAGTGCATAAA
TAATGATGGAGGCTGAAAGAGGAGGAAGGCTGAGGCTTCCCGCGCCGCGAAGCCTCACCCAGAAC
AAGAAAAATAAGGTACACCAAGTTTGTCTGCTAATTTATGTGATCATATATCATAATTTAATTTA
TTCTGGAATTTATTCGAACCTTTCTCGTCGAGAAGAGCGCAGGAA
Right flanking sequence: Indices 361066 -- 361565
TTTTTGGCGAGATTATATACATATATTATTATGTAAATGCCGCTTTCGACACAAGAAACGCTGTG
CAAAAAACAAACATGGTTTACCTCCCACCCCGTCTTGTTCTCTGAGAAGGCTTTCCCCATTGCAA
AAAGATCTCTTTTTCTTGGGCATGATGCGCCGCGGGGATGCCTGCACCGAGAGTCATCATTGTCC
CGTGAAGTACTTTCTTGGCTTCCACCGGGAAGGTGGAAGAGATGGAAGTGCCAATCTTTTCTGCG
GGGCGAAGGTAATCAAACGCAAAGCAGCTCCCCGCGGCTTGATTCGCTTGGCAGGACCCCGCGCC
CCAGCGTGCGTGCTATTAGCGGAGGTGGGTGCTCAGCCCTTCTGTCGTATCCGCACTCCGGACTC
TATGCTGGCCGCAGCAGGCTGCGCGTTGGCGTAGCCAACCGAGGCAAGAGATCAATCAAGTTGAT
GAATGACTGATCATGCCTACCTTTCGGAGGTTCTCCCGCTTTGTT
Found at i:365038 original size:4 final size:4
Alignment explanation
Indices: 365029--365140 Score: 224
Period size: 4 Copynumber: 28.0 Consensus size: 4
365019 GGAGGGCGGC
365029 TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA
1 TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA
365077 TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA
1 TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA
365125 TAAA TAAA TAAA TAAA
1 TAAA TAAA TAAA TAAA
365141 GGGGTGTTCC
Statistics
Matches: 108, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 108 1.00
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (4 bp):
TAAA
Left flanking sequence: Indices 364529 -- 365028
TTGCTGAACATTATTTATATACCGTATTGTGAGATCCTTCGATCCTTAAGTTCCCTCCATGCCAT
GCGTTGCAGTATTTACTGCCCGGCTTCTCCAGCAATAATAATTGTTGGTGATATATTCAACCACC
TGCTGCTGACGAAACAGGCGGCTGTTCATGCTAAATAATTGGGGATTGAATCTCTTGGTGGTTAG
TTATCCACTAGCTTTTTCGGATAATAAAAATTCATATAGCAAATACGGAAATAAATTAGTACTTA
TAGAATCATATAATAAATCATGACTACTGCAGTTAGTAGTCTACAAGAGAGGTAAAGGTTAAAAA
ATTCACCAACCATATGAAGAAATAATATTAGAAACCTTCGGAAACCAGCTACCAAAAACAGAAAC
GGAAATCTCTTGTGGAATAAGAGAATTGACAATACTTAATTTATTTTAGAAAAAAAGGGGTTTAA
TTTAAGTGGCCACCTTAAAGATAATAAGATCACCTGGAGGGCGGC
Right flanking sequence: Indices 365141 -- 365640
GGGGTGTTCCCCGTAAAATCAGTAATTTGTACATACAGATAACGCAGACCACCGGAATAAAGCAC
CCATAGCCATCATAAGAGCATAATGCTTTTGACAAAAGTGGTATATAATGATAAAAGTGGTATAT
AAGAAGAACAATTTGCATTTTAAACTACTTCCTAGCATAACCATTTACTTTTTTTTGTTTCTGTC
AAACAATGACCATTTGATACAGTATGAATTGAACCTACTGATGAACTATTTCGTATAAATGAGGC
TCATAAGAATGGCGGGCAAAGTATAATTCCCAGCGATGAATGGGCTGATATGTATGGGAAAACCT
CAAAATTTTAGCATTGTATTACGTTATAGTTATATATGCTGATCCATCACGATAATTAATTCGAG
GAGTCGTCTTAGAAAATGATCATTTATCTATGTTAATTTCTTCCTATTTACTTTCTCAGATGATT
CATGGCTGCTAGGCACGGAAACGAGCTATTCATCATGGAATTCCC
Found at i:380473 original size:20 final size:20
Alignment explanation
Indices: 380448--380492 Score: 90
Period size: 20 Copynumber: 2.2 Consensus size: 20
380438 TTATCCCCCA
380448 ATTATTATATTGATCTTTCT
1 ATTATTATATTGATCTTTCT
380468 ATTATTATATTGATCTTTCT
1 ATTATTATATTGATCTTTCT
380488 ATTAT
1 ATTAT
380493 GGATGTTGGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.27, C:0.09, G:0.04, T:0.60
Consensus pattern (20 bp):
ATTATTATATTGATCTTTCT
Left flanking sequence: Indices 379948 -- 380447
CACGGTAATGGCATTCCGAGGGTCCGTAGTAGCGCTTCGGGCGGAAACACTCATTCTACCTGGCT
TTGGGACCTAGCTCACGATCGTACTGCGCGAGACCCAAGATCTCGGATGGCGATGCTTCAGCTCG
TCCCAGCGGAGCAAGCCGCGCAGCCAGCAAGGTTGACTGGTCTGACCGCATCCTATCTTAGTCTC
TGCTGAAGAATTCAAACCTACCAGGGAACATAATGAAGATCGGAGATGCAAGCCATAGAAGGAAA
AATATTACGTCTAGTTTTGGGGACAGCCATTCAGACGTGGATGGACTGACCCCTATAGGGTGGCG
TGATGTTATACATAAATTCACTTACGAAGGACATCATACATTTGTGGTACAATTAGGGCCAAGGG
CCGGTTGTATTTTGTTCATCATCCCGGGGGTCACGTATCTTTTAGCTTCCTCTCGGGCTTTTTCC
ACTTTTATTTGGCTTCATGGCATAATGATATTTTTTTATCCCCCA
Right flanking sequence: Indices 380493 -- 380992
GGATGTTGGTTCGCACCTGGCATTTTCATTGGAAAACAAATTCAATTCCAGAAAGGATTGTTCAT
GGAACTACTACAGAGATTACTTATTCGGACCATTTCACCAAATGTTTGACCTACGATTATTTGTC
TCCTTATTATGCCTGAACCTGCATTTCGCGCTGCGGGTTCATAGTTGGATCTCTGGTTTGGCAAC
GACGCCTCGTTGCAACAGCGGGGGCTTCTATTTATTTAGGAGACACATAAGACTTAGGTTAGCTC
GGTTAACAACACGGCGCAAAACGAAGTTCGTTCTTAACTCTGCAGCGAATATATGCCCAGATTTA
AATATACGAAAACTCAACGGGATCGGCCTGCCCAGCTGGTCAGTGAGTTTGTGTACTTAACTGAA
GCTTGAAAAATTATAGAAGCTCGGAAGTGGTAAATTCTTTTAAGGAATTTAAGAATACCTAATTA
ACTTTAGGCCCACTTCAGAGCATCAGCTATGCTTATCATGGGGCG
Found at i:386457 original size:20 final size:20
Alignment explanation
Indices: 386432--386471 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
386422 ATTTGCGTTC
*
386432 GCGGACTCGCTCAT-CGTTAA
1 GCGGACT-GCACATACGTTAA
386452 GCGGACTGCACATACGTTAA
1 GCGGACTGCACATACGTTAA
386472 ACATTTAATG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 5 0.28
20 13 0.72
ACGTcount: A:0.25, C:0.28, G:0.25, T:0.23
Consensus pattern (20 bp):
GCGGACTGCACATACGTTAA
Left flanking sequence: Indices 385932 -- 386431
TAAATTGTATACATTTTTCCCACCCTAAAAAATCTATGTTTTCCCAGAGGGGCACACAGTGCGGT
GAAACCGCCTGCTGCGGCGGCCTGCGGCGGCCTTGTGCTATGCTTAGAAGCAAAAGCAACGGGTT
TCCCCCCCCCCCCACGGGGGACGGGGCAAGCAGCGTCGCTGCTTGATTGGCGAAGGAGAAGAAAG
CGCGCTTGGTGGGTTTATTGGCGTAGTTTGGTTCTCAAGCTCTGTACTTAAACTATGGTTCAATC
TGGAGAAGGCTTTGATAACTCGAACTAAAGGGGGAAGAGGACTTGCAATCCAAGATAAAGAAACG
AGAGGATAGAAGAGAACGCCTTCGGCCCTCCCCTGGGCCAAAACGCAGAGGCTTTTGGGGACGAG
AGATAAAGCAATCTTCTTCCCTAAAGGTGCCTGAAGACAAAAACAAAAAAGCGCTCAGGAAAGAG
AAGAAGCAGGTACTTCTTATGTAGAAGAGGCCTCGATTTGCGTTC
Right flanking sequence: Indices 386472 -- 386971
ACATTTAATGATAGCTGCCTGCGCAATTGTCCTTTTTTCTTTCCTCTCATGTTCGCTTTGCAAAG
CACTTGATTCGCCGCAGAATCGAGGGAACTTATGACAAAGCAGCTGTAATTGGGAGGCGGAAGTC
CGACCAATAAGCTGAATGGATAACGCAAAGGACCGCCTTTGGAGAGAATAGGGGCGGGCACGGGC
CATAAACCACCTCCTATGCAAATAAAGTGGGGGAGATAAAGGCATTCTATCCGGTAGAACGTTGA
AACCGCCCGCACGGGGGATCGAGCAGATCATTGTTTGATTATTGGCGGAGAAAAGCAAGTGCACA
GTGCAGGGGGCTTGCCAAGAAAGAATCAAGCGCTTTTACTTTGTCCCCTTTGCGATATTGCGGGA
TCCACCCTCATATAATAGGCAACTTGGGTTGGAGAGCCGTGTGATGGGCAACCATCTTGCACGGT
TCGGAGAGCACTTGATTTAATTTAGTCTGCGCTGGTAGATGTCAG
Found at i:397107 original size:14 final size:17
Alignment explanation
Indices: 397088--397123 Score: 51
Period size: 14 Copynumber: 2.3 Consensus size: 17
397078 CCAAGCTAAG
397088 AAAAGAA-AA-AAAAA-
1 AAAAGAAGAATAAAAAT
397102 AAAAGAAGAATAAAAAT
1 AAAAGAAGAATAAAAAT
397119 AAAAG
1 AAAAG
397124 TATACCCGAC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
14 7 0.37
15 2 0.11
16 5 0.26
17 5 0.26
ACGTcount: A:0.83, C:0.00, G:0.11, T:0.06
Consensus pattern (17 bp):
AAAAGAAGAATAAAAAT
Left flanking sequence: Indices 396588 -- 397087
GCTAAGACTTGTCGCAAATTGAGAAGGGTTTCGATCAAAAAACTAAAAAAACGAGGTTGATTGAT
GATTTGCAACGATTCATCATTCGCAATAATGAAGGAAAGCGAAGTGCCGAGAATTGGCGTGAAGC
AATGTGAAAAATTTTCAATTCAACGACACGGCTTGATTATTGGCTTTTCTCCTGCAGAAACATCG
TCGTCTATGGGTGAGGCCGGCAGCTCCTATTGCCTTGCTGCGGGCGCAGTCCGCTTCATTCGCGT
TGCGGTTTTGGACCCGACCGGAGAATCATTGCATATTATTCATCCATCCGCCCAAGAAAAGCGGC
GCTTTCAGCGTTCCAGGACACTTTCCTCGCATAGCCAAGAAAGCGCCCGCGTGCAAACAAAGAAT
CCAACGTATTTTGTTTGTTATCCGAGCGAGCTAGAGAACGCTATGCGTTCTCCAAGCGCAAAGCG
CGCCGGTGGCCAGAAGAAAGCAGAAAGCGCTTTCGCCAAGCTAAG
Right flanking sequence: Indices 397124 -- 397623
TATACCCGACCCAGGGTTATTTATATAAACCGGTTTCGAATTCATGGTATGGTAGATTTGCCATG
GAAATTAAACTTAAACCTCTTTCGATACTCAAACGGATAATCACGTAAGTGAGACTGTTAATCGT
ATTACAAACCCCTACTGGGCAAGTTTAGTCACAAGTTTTCTCAGCAGAGCCATAATAAGCGAGAT
CCTACATCAAAGGAGGCGGCGGCTAAAGGGGGGGGGGGGGGGGTTCCTGGTGGTTGTCTCGGTTA
CTATGGATGGTTTCATTACATCAACATCGTTGAGGGAGGTTTTAGACAACATTAACGGGCCTCTA
AGATAAATGTATAAGAAAAGTGGTGTGGCTAGTATCGGGGGTGACGTAGAGTACCTGGAGGGGAA
GGGGTGTACATCTTTCTCATATTCCTGGAGGACGCGCCGCGGGCAGTTGGATCTTGAAGAAGGTA
AAATATCTGCCATGGCTAATATCCACAATTTTAGGGTTGAAAGAT
Found at i:397116 original size:17 final size:17
Alignment explanation
Indices: 397090--397123 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
397080 AAGCTAAGAA
397090 AAGAAAAAAAAAAAAAG
1 AAGAAAAAAAAAAAAAG
* *
397107 AAGAATAAAAATAAAAG
1 AAGAAAAAAAAAAAAAG
397124 TATACCCGAC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.82, C:0.00, G:0.12, T:0.06
Consensus pattern (17 bp):
AAGAAAAAAAAAAAAAG
Left flanking sequence: Indices 396590 -- 397089
TAAGACTTGTCGCAAATTGAGAAGGGTTTCGATCAAAAAACTAAAAAAACGAGGTTGATTGATGA
TTTGCAACGATTCATCATTCGCAATAATGAAGGAAAGCGAAGTGCCGAGAATTGGCGTGAAGCAA
TGTGAAAAATTTTCAATTCAACGACACGGCTTGATTATTGGCTTTTCTCCTGCAGAAACATCGTC
GTCTATGGGTGAGGCCGGCAGCTCCTATTGCCTTGCTGCGGGCGCAGTCCGCTTCATTCGCGTTG
CGGTTTTGGACCCGACCGGAGAATCATTGCATATTATTCATCCATCCGCCCAAGAAAAGCGGCGC
TTTCAGCGTTCCAGGACACTTTCCTCGCATAGCCAAGAAAGCGCCCGCGTGCAAACAAAGAATCC
AACGTATTTTGTTTGTTATCCGAGCGAGCTAGAGAACGCTATGCGTTCTCCAAGCGCAAAGCGCG
CCGGTGGCCAGAAGAAAGCAGAAAGCGCTTTCGCCAAGCTAAGAA
Right flanking sequence: Indices 397124 -- 397623
TATACCCGACCCAGGGTTATTTATATAAACCGGTTTCGAATTCATGGTATGGTAGATTTGCCATG
GAAATTAAACTTAAACCTCTTTCGATACTCAAACGGATAATCACGTAAGTGAGACTGTTAATCGT
ATTACAAACCCCTACTGGGCAAGTTTAGTCACAAGTTTTCTCAGCAGAGCCATAATAAGCGAGAT
CCTACATCAAAGGAGGCGGCGGCTAAAGGGGGGGGGGGGGGGGTTCCTGGTGGTTGTCTCGGTTA
CTATGGATGGTTTCATTACATCAACATCGTTGAGGGAGGTTTTAGACAACATTAACGGGCCTCTA
AGATAAATGTATAAGAAAAGTGGTGTGGCTAGTATCGGGGGTGACGTAGAGTACCTGGAGGGGAA
GGGGTGTACATCTTTCTCATATTCCTGGAGGACGCGCCGCGGGCAGTTGGATCTTGAAGAAGGTA
AAATATCTGCCATGGCTAATATCCACAATTTTAGGGTTGAAAGAT
Found at i:397646 original size:24 final size:24
Alignment explanation
Indices: 397618--397665 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
397608 TTTAGGGTTG
397618 AAAGATGATAATAATTTCCTTTAA
1 AAAGATGATAATAATTTCCTTTAA
397642 AAAGATGATAATAATTTCCTTTAA
1 AAAGATGATAATAATTTCCTTTAA
397666 TGGGTTGAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.46, C:0.08, G:0.08, T:0.38
Consensus pattern (24 bp):
AAAGATGATAATAATTTCCTTTAA
Left flanking sequence: Indices 397118 -- 397617
TAAAAGTATACCCGACCCAGGGTTATTTATATAAACCGGTTTCGAATTCATGGTATGGTAGATTT
GCCATGGAAATTAAACTTAAACCTCTTTCGATACTCAAACGGATAATCACGTAAGTGAGACTGTT
AATCGTATTACAAACCCCTACTGGGCAAGTTTAGTCACAAGTTTTCTCAGCAGAGCCATAATAAG
CGAGATCCTACATCAAAGGAGGCGGCGGCTAAAGGGGGGGGGGGGGGGGTTCCTGGTGGTTGTCT
CGGTTACTATGGATGGTTTCATTACATCAACATCGTTGAGGGAGGTTTTAGACAACATTAACGGG
CCTCTAAGATAAATGTATAAGAAAAGTGGTGTGGCTAGTATCGGGGGTGACGTAGAGTACCTGGA
GGGGAAGGGGTGTACATCTTTCTCATATTCCTGGAGGACGCGCCGCGGGCAGTTGGATCTTGAAG
AAGGTAAAATATCTGCCATGGCTAATATCCACAATTTTAGGGTTG
Right flanking sequence: Indices 397666 -- 398165
TGGGTTGAATCCACTGCAATGAAACCTGCTGTAAATGTTTTTAATGAAAGTAGAGCCTTGACAGG
TCTAGTATCTGTTTACAAGGGGTCGGTCCTCTTATGGATTAATCAAACTCAACAAATATATAACC
ACTCAATACGATTTTAAACGACGATTTCTTACTCCGAAAGACCCCGAGTACGGTATAAAAGATAC
GACGAGAAGTACATCACAGCAAAACCTTGGGTTAGGGCTTAGGATATGAGGATCTTTACCAGGGA
GTACGTCGAGGGTTACCTCTTTCTTTTTCAAATACATGACAAAGTATTTCTTTCAAATTATGACT
ACGTAGCTATAATTGACAAGGTTAGTAAGGTTGAAAGAGCGCGTTCTAAAGATAAAGAGGGCTCG
GTTGAGATACAATCTTACCCACGACAACCTTGATGGGGAAGGATTTCTTTTTGTGTACGAGGTAC
GCTTGAACGGCTGTGCTGGATTAGTAGTAGCGGAGAATAAGTTGA
Done.