123.fas.2.7.7.80.10.50.500.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NC_017755
Parameters: 2 7 7 80 10 50 500
Length:  413530

Tables:   1   

This is table  1  of  1  ( 94 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6323--6433	56	2.0	56	89	0	168	19	27	17	36	1.94
7002--7056	17	3.3	17	70	14	51	30	18	10	40	1.85
9825--9885	32	1.9	32	96	0	113	21	18	24	36	1.95
9964--10061	51	1.9	51	87	2	144	29	21	12	36	1.90
10291--10345	16	3.4	16	90	5	83	25	23	14	36	1.93
16639--16761	62	1.9	62	83	6	156	29	19	13	37	1.90
19111--19187	28	2.8	28	91	0	136	36	11	22	29	1.89
28127--28163	12	3.1	12	100	0	74	56	8	8	27	1.56
32445--32494	24	2.1	24	96	0	91	34	14	4	48	1.62
43527--43586	31	1.9	31	93	0	102	20	46	1	31	1.60
63412--63466	27	2.0	27	96	0	101	47	18	14	20	1.83
73360--73405	22	2.0	24	87	8	69	6	30	26	36	1.82
82691--82750	30	2.0	30	96	0	111	13	41	36	8	1.74
89205--89239	18	1.9	18	100	0	70	51	11	25	11	1.71
90951--91174	116	1.9	116	88	1	335	30	17	15	36	1.91
91065--91427	154	2.3	154	81	8	396	33	17	15	33	1.92
91065--91507	150	2.9	153	82	8	465	33	17	16	33	1.92
91472--91538	35	1.9	35	100	0	134	38	23	22	14	1.92
91686--91712	14	1.9	14	100	0	54	51	11	7	29	1.64
92575--92623	20	2.4	20	86	10	64	44	12	10	32	1.75
92924--92979	21	2.7	21	97	0	103	23	7	35	33	1.82
93406--93478	33	2.2	33	100	0	146	24	20	20	34	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93714--93738	8	3.1	8	100	0	50	24	40	12	24	1.88
93762--93786	8	3.1	8	100	0	50	24	40	12	24	1.88
93855--93903	22	2.2	22	85	7	64	22	42	18	16	1.88
93973--94190	97	2.3	90	79	11	231	27	25	20	27	1.99
94801--94851	26	2.0	26	100	0	102	11	27	27	33	1.92
108448--108493	23	2.0	23	100	0	92	43	4	39	13	1.63
118701--118748	21	2.2	22	96	3	89	50	8	8	33	1.63
121830--121897	24	2.8	24	84	0	100	38	29	5	26	1.80
124375--124593	92	2.4	92	85	4	293	36	15	23	24	1.94
130344--130374	8	3.8	8	95	4	53	83	0	12	3	0.75
141580--141623	22	2.0	22	100	0	88	13	36	9	40	1.76
142863--142901	20	2.0	20	95	5	71	53	10	5	30	1.56
157025--157112	46	1.9	45	90	2	140	39	25	23	11	1.88
159145--159185	18	2.3	18	87	8	57	21	24	36	17	1.94
165623--165662	21	1.9	21	84	0	53	45	10	20	25	1.81
170602--170628	12	2.2	12	100	0	54	51	18	14	14	1.76
171121--171155	18	1.9	18	100	0	70	22	17	11	48	1.79
197924--197964	12	3.3	12	83	6	55	39	12	14	34	1.84
198502--198567	22	3.0	22	97	0	123	24	18	22	34	1.96
198685--198830	58	2.6	56	93	5	244	19	26	23	30	1.98
198887--198992	40	2.7	40	100	0	212	27	25	30	16	1.97
201576--201616	21	2.0	20	85	4	55	2	34	51	12	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
205810--205875	35	2.0	33	88	8	98	12	30	39	18	1.87
209476--209625	81	1.9	81	88	2	230	28	26	18	27	1.98
211597--211633	18	2.1	18	94	0	65	48	16	13	21	1.80
214471--214500	9	3.4	9	90	9	53	0	6	0	93	0.35
214469--214506	11	3.4	11	85	14	51	0	7	2	89	0.57
214468--214500	17	1.9	17	100	0	66	0	6	0	93	0.33
214469--214506	17	2.2	17	90	0	58	0	7	2	89	0.57
214812--214904	25	3.7	25	83	0	123	3	41	12	41	1.59
218074--218118	15	3.0	15	100	0	90	40	0	0	60	0.97
224807--224999	64	3.0	64	89	3	273	18	29	26	24	1.98
226224--226284	27	2.3	27	94	2	106	26	18	3	52	1.60
226224--226314	31	3.1	30	82	16	95	25	19	4	50	1.66
249489--249516	2	14.0	2	100	0	56	50	0	0	50	1.00
249511--249540	15	2.0	15	100	0	60	46	6	0	46	1.29
258355--258401	21	2.2	21	100	0	94	19	19	19	42	1.89
275897--275999	46	2.2	46	89	3	154	26	19	27	27	1.99
277546--277686	42	3.4	42	93	0	228	25	27	20	26	1.99
279138--279202	27	2.3	28	79	10	71	30	21	21	26	1.98
283133--283212	28	2.9	28	94	0	142	3	32	15	48	1.62
283152--283202	15	3.5	15	70	20	54	3	31	13	50	1.60
308594--308644	26	2.0	26	100	0	102	33	27	27	11	1.92
309542--309590	22	2.2	22	85	7	64	16	18	42	22	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
309659--309683	8	3.1	8	100	0	50	24	12	40	24	1.88
309707--309731	8	3.1	8	100	0	50	24	12	40	24	1.88
309967--310039	33	2.2	33	100	0	146	34	20	20	24	1.97
310466--310521	21	2.7	21	97	0	103	33	35	7	23	1.82
310466--310542	21	3.7	21	87	3	66	36	32	9	22	1.85
311732--311758	14	1.9	14	100	0	54	29	7	11	51	1.64
311906--311972	35	1.9	35	100	0	134	14	22	23	38	1.92
311937--312264	150	2.2	151	86	7	443	32	16	17	33	1.92
311967--312379	154	2.7	155	81	8	447	34	16	16	32	1.91
312270--312493	116	1.9	114	88	1	331	36	15	17	30	1.91
314205--314239	18	1.9	18	100	0	70	11	25	11	51	1.71
320115--320158	21	2.1	21	82	0	52	43	15	15	25	1.87
320694--320753	30	2.0	30	96	0	111	8	36	41	13	1.74
329011--329108	39	2.4	40	78	14	103	61	14	11	13	1.58
329083--329150	24	3.0	22	87	10	93	63	11	7	17	1.50
334084--334123	20	2.0	20	95	0	71	7	17	30	45	1.76
343817--343860	15	2.7	16	82	10	54	31	15	40	11	1.83
346868--346934	33	2.0	34	97	2	127	26	20	29	22	1.99
348055--348102	24	2.0	24	100	0	96	20	16	16	45	1.85
349378--349448	25	2.8	25	82	0	79	40	28	8	22	1.83
359107--359155	25	2.0	25	84	8	64	24	20	18	36	1.94
361022--361065	20	2.2	20	87	0	61	43	13	27	15	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
365029--365140	4	28.0	4	100	0	224	75	0	0	25	0.81
380448--380492	20	2.2	20	100	0	90	26	8	4	60	1.46
386432--386471	20	2.0	20	85	9	55	25	27	25	22	2.00
397088--397123	14	2.3	17	86	13	51	83	0	11	5	0.80
397090--397123	17	2.0	17	88	0	50	82	0	11	5	0.83
397618--397665	24	2.0	24	100	0	96	45	8	8	37	1.64

Tables:   1

The End!