123.fas.2.7.7.80.10.50.500.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NC_050950
Parameters: 2 7 7 80 10 50 500
Length:  680480

Tables:   1   

This is table  1  of  1  ( 91 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26--97	24	3.0	24	100	0	144	29	25	37	8	1.85
1375--1450	28	2.7	28	89	0	116	25	23	40	10	1.86
2073--2127	27	2.0	27	100	0	110	32	18	27	21	1.96
2799--2830	16	2.0	16	100	0	64	18	18	25	37	1.94
18914--18940	14	1.9	14	100	0	54	33	7	0	59	1.25
23867--23902	18	2.0	18	100	0	72	33	33	11	22	1.89
38055--38105	24	2.1	25	88	3	77	33	13	41	11	1.81
45032--45079	24	2.0	24	100	0	96	45	12	20	20	1.83
51225--51290	21	3.1	21	100	0	132	22	9	9	59	1.56
61104--61160	18	3.2	18	76	0	69	49	17	26	7	1.72
73429--73474	22	2.0	23	87	4	67	43	15	23	17	1.87
90682--90811	30	4.3	30	98	0	242	22	25	46	6	1.75
90791--90857	25	2.7	25	95	0	125	22	19	49	8	1.76
94764--94799	18	2.0	18	100	0	72	33	27	11	27	1.91
94982--95023	21	2.0	21	95	0	75	23	21	4	50	1.68
121618--121698	31	2.6	31	78	9	83	23	23	43	9	1.83
131858--131887	15	2.0	15	100	0	60	40	6	20	33	1.78
160689--160755	33	2.0	33	85	5	91	20	19	49	10	1.77
166601--166650	26	1.9	26	95	0	91	22	32	4	42	1.72
166666--166708	21	2.0	22	95	4	79	20	27	18	32	1.96
166733--166779	23	2.0	23	100	0	94	29	29	12	27	1.93
167557--167597	21	2.0	21	90	0	64	31	19	17	31	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
168046--168211	21	7.9	21	73	10	142	30	9	21	38	1.86
168046--168211	42	4.0	42	80	3	181	30	9	21	38	1.86
168046--168211	63	2.6	63	91	0	278	30	9	21	38	1.86
182065--182089	7	3.6	7	100	0	50	84	0	16	0	0.63
196416--196509	32	2.9	33	78	7	104	12	47	17	22	1.81
218305--218429	44	2.8	44	98	0	241	37	17	8	36	1.79
234986--235029	22	2.0	22	100	0	88	31	18	27	22	1.97
236553--236603	23	2.3	23	96	3	95	52	11	9	25	1.68
239977--240142	21	7.9	21	79	0	161	38	21	9	30	1.86
239977--240142	42	4.0	42	80	3	181	38	21	9	30	1.86
239977--240142	63	2.6	63	91	0	278	38	21	9	30	1.86
240591--240631	21	2.0	21	90	0	64	31	17	19	31	1.95
241409--241455	23	2.0	23	100	0	94	27	12	29	29	1.93
241480--241522	21	2.0	22	95	4	79	32	18	27	20	1.96
241538--241587	26	1.9	26	95	0	91	42	4	32	22	1.72
247433--247499	33	2.0	33	85	5	91	10	49	19	20	1.77
259889--259985	27	3.7	26	82	9	110	9	43	24	22	1.83
259911--259987	27	2.9	27	92	3	131	9	42	25	22	1.82
264754--264877	30	4.1	30	98	0	239	21	26	45	6	1.76
264857--264923	25	2.7	25	95	0	125	22	19	49	8	1.76
273022--273066	21	2.1	21	84	8	56	35	11	13	40	1.80
288792--288834	18	2.4	18	81	18	54	18	20	25	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
315642--315698	28	2.0	28	100	0	114	21	19	42	17	1.90
339824--339888	30	2.2	30	94	0	112	6	44	24	24	1.76
342017--342057	20	2.0	20	90	0	64	41	12	26	19	1.87
352813--352862	3	16.7	3	87	0	73	36	34	30	0	1.58
352813--352880	9	7.6	9	83	0	73	39	30	26	2	1.71
356710--356756	24	2.0	24	87	8	69	42	14	6	36	1.72
364200--364236	19	2.0	19	94	5	67	21	32	27	18	1.97
370626--370713	33	2.7	33	94	3	151	19	25	43	12	1.86
380160--380284	44	2.8	44	98	0	241	37	17	8	36	1.79
386376--386423	21	2.2	21	88	3	69	47	4	20	27	1.68
386383--386424	21	2.0	21	95	0	75	50	4	21	23	1.68
386607--386642	18	2.0	18	100	0	72	27	11	27	33	1.91
390549--390597	25	2.0	25	95	0	89	10	48	20	20	1.78
393399--393470	32	2.2	32	82	4	92	5	51	18	25	1.67
410092--410167	33	2.4	33	86	4	102	21	25	44	9	1.81
410261--410364	32	3.2	32	69	15	106	21	19	47	12	1.82
410248--410395	64	2.3	64	97	2	280	22	20	44	12	1.84
410282--410395	32	3.6	31	70	14	106	23	19	44	12	1.84
416687--416777	32	2.8	32	96	0	164	25	21	43	8	1.81
452097--452221	44	2.8	44	98	0	241	36	8	17	37	1.79
461668--461755	33	2.7	33	94	3	151	12	43	25	19	1.86
468145--468181	18	2.0	19	94	5	67	18	27	32	21	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
479519--479568	3	16.7	3	87	0	73	0	30	34	36	1.58
479501--479568	9	7.6	9	83	0	73	2	26	30	39	1.71
483677--483716	21	1.9	21	100	0	80	47	5	17	30	1.69
495610--495639	11	2.8	11	95	5	53	26	20	0	53	1.46
503332--503379	24	2.0	24	100	0	96	33	12	29	25	1.92
538869--538915	24	2.0	24	91	0	76	25	25	21	27	1.99
542257--542294	19	2.0	19	100	0	76	26	21	15	36	1.93
549445--549548	32	3.2	32	71	15	115	12	47	19	21	1.82
557360--557468	32	3.4	32	98	1	211	9	48	18	23	1.76
560866--560917	25	2.0	26	92	3	88	9	46	23	21	1.80
560975--561085	30	3.6	31	78	10	122	9	45	20	24	1.82
573840--573921	29	2.8	29	100	0	164	24	18	43	13	1.85
574653--574750	33	3.0	33	100	0	196	21	24	42	11	1.85
586277--586406	27	4.8	27	100	0	260	29	15	41	13	1.86
588123--588266	57	2.5	57	98	0	279	31	18	25	25	1.97
588543--588597	27	2.0	27	92	0	92	43	12	16	27	1.84
593068--593141	26	2.8	26	95	4	132	27	16	48	8	1.74
623542--623587	20	2.3	20	100	0	92	47	8	10	32	1.69
626557--626603	17	2.8	17	96	0	85	23	12	36	27	1.91
626581--626674	31	3.0	31	87	0	134	15	20	31	31	1.94
626826--626885	30	2.0	30	90	0	93	26	18	50	5	1.67
627118--627205	23	3.8	23	100	0	176	17	27	29	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
641539--641598	29	2.1	29	100	0	120	38	10	6	45	1.64
665609--665642	16	2.1	16	94	0	59	32	14	0	52	1.42
671966--672053	33	2.8	32	81	10	117	23	15	52	7	1.69

Tables:   1

The End!