Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_067574
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 573154
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.28
Found at i:42260 original size:30 final size:30
Alignment explanation
Indices: 42224--42325 Score: 204
Period size: 30 Copynumber: 3.4 Consensus size: 30
42214 TTTTGGCAAC
42224 TTTCATCTCCTCTCCTTACAGTCGAGCGGA
1 TTTCATCTCCTCTCCTTACAGTCGAGCGGA
42254 TTTCATCTCCTCTCCTTACAGTCGAGCGGA
1 TTTCATCTCCTCTCCTTACAGTCGAGCGGA
42284 TTTCATCTCCTCTCCTTACAGTCGAGCGGA
1 TTTCATCTCCTCTCCTTACAGTCGAGCGGA
42314 TTTCATCTCCTC
1 TTTCATCTCCTC
42326 CAATTGAATT
Statistics
Matches: 72, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 72 1.00
ACGTcount: A:0.16, C:0.34, G:0.15, T:0.35
Consensus pattern (30 bp):
TTTCATCTCCTCTCCTTACAGTCGAGCGGA
Left flanking sequence: Indices 41724 -- 42223
CTTGTTGACCAAGTAAAGCAAGGCTTGGTGATCCACGAATAAGACTCATTTCGTTCCCAAGCAAG
AGAGGGACGGCATGACAGAGGGACTTACCAACCAGCGACCTCAAAAATCCAATCTACAGCAGCCG
AGTGAAAGAGTCTGGTTTGATAGAACCAGGATTTGCACCTTCTCTGTCCTACGTCTAAACTCCAA
TCAAAAACTAACTAGGCTCTAATGGCTTTAACTGATCCTATGTCCCGTCTATAGGAATCATCCTA
AGTCATAAGAATAAACATACATCAGAAAGAAGCAACAAAGCTTGCTTAAAAGCAAAAGGAATGGC
AAACGTCCCCTGCACCCTCTCTTTTCCTTTGAAAAGCCAACCTTTTCTTTTTTGAAGACAAAGTC
ATCGTCATTCTCGACTTAGGCTGAGATACAGTCGGCTTTATTTGGACTGGAGGTACAGAGTAGGC
AACTCCTTTGCCTTTCATCTGCCGGACATCCCTTTTTTTGGCAAC
Right flanking sequence: Indices 42326 -- 42825
CAATTGAATTCTTCTATCAATTAAAGCCTTCACAGAGAGTAGATCTGCATTGGGCTTAACCCATG
CGTAGATAAATTCTCTGCTTACCACTACAGAAGACGAAGTAAGAGCCAATGGAATCTTACTAGTC
CTCAAGTAATCCCATGTCCTGAATAACAGGCCGTACCGAGAGATTGTTTCCTCTCCTTCTTAGCT
TAGTCGGGCTAGGAACCTACTTTCCGGCTTAGCTTAGTCTGGCAAAGAGCTTCCCTTTCTTGGTC
GAGGGGTTTGGTTCCTCTTCCTACTTTCCTTTTTTAGTCGAATACCTCGCCAGTTCCATTTTCAG
TCTTAGCCAAGTAGCCTTCACTCATAAACTCCGGTTTATGGCAAAACCCTCTCCCTGTAGGTCTC
GTACCCAAAGCCCTATCCCTGCCTTCGAGGTCAAGTATCTGAGGAATCTAAATCCCTTTCGAGCT
GGTCCCTTGGAAACTCTCTATCTTCGGAGCCTCTTTCTGGTCGAG
Found at i:45557 original size:26 final size:26
Alignment explanation
Indices: 45521--45572 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
45511 GGTAGTTCCT
45521 TCTCACTTTTCCTATCTTAGCTGCTA
1 TCTCACTTTTCCTATCTTAGCTGCTA
45547 TCTCACTTTTCCTATCTTAGCTGCTA
1 TCTCACTTTTCCTATCTTAGCTGCTA
45573 GTCGAATGTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.15, C:0.31, G:0.08, T:0.46
Consensus pattern (26 bp):
TCTCACTTTTCCTATCTTAGCTGCTA
Left flanking sequence: Indices 45021 -- 45520
CTATTTATTAGCTTGTAGCTCTGTCATTCCTATCCTAGTAGGAAGCTATTCTACTATCTGAGTAG
CGGACTCTCTTGTGTTAAGTATTTGTATCCTAAGAGAGTCCGGTATCCCACTCTCTATCTAGATG
GATATAACGGAATAAATACTACCTAATTAGATGGTAGTTTCCTCTTCTTACTTGACTGTCGGCTA
AACGAGATGCTGTTAAAGAATCTCTGTTATGACTGGCATTAACTTCCTTAACGGCACTGGTAGAT
CTCTAAGGAAGTAGGAGTTCGTGGCTTCTTTCTTCCCTTGATTGAGAGCTAGGACGGATTTGAAT
GGATGGGATTGTAGCTCTCTTCTTTGTAGGTTTGAAGATAGGCTAGATTAGCACGAATTCTATCG
ATCAAGCTGGTTGTTCCTGTAATCGAGTAATCGAATATGGTAGCTAGTTGACGAGCGTAGTATAA
GAATCTTTTTTCTTGTTAGGCTTGTACTAATGAGTGGTAGTTCCT
Right flanking sequence: Indices 45573 -- 46072
GTCGAATGTAGGCTAGAATCTATCTCCTTCTTTTAGTTTGTAGCTTCCTTTCCTTAATGCACTGG
GAGTGGAGTAAGGTAGTTTACTTGCTTATATAAGGACTCACAGCTTCTTGTTTGAGAGCTAGTAT
CTAAATGTCTGGTTTAGGTAGGTATTAACCTCATGGCTTCTCTTAAGCCTTTCAACGATCGTTTA
GCTATCCGAATTAGGGATAGATAGTTACACCTGTCCGTCTGAACATATATATTGTTAGTGTGTCC
TAAGAGAGTCTGTATTTTCGAATAGAAATTAGTTAATATTTGGTTCTTTTGAGCTATCCTAAATC
ATACTATTTTGTGTCAATAGTAGTTCCCAAGATTGTCTGCTAACAAAGTGGATTTGGAAATTACA
TAAGTAGATGATTGAGCCATCAAATGATCTCACCATTTTCTAGTAATACTTGCTCGGGACTCGCC
TGCGCTAAGCCTCAGGGAATTGTAAATGGACTACTTGAGGAAGAA
Found at i:53687 original size:5 final size:5
Alignment explanation
Indices: 53677--53764 Score: 176
Period size: 5 Copynumber: 17.6 Consensus size: 5
53667 CCGCCTGAAC
53677 TTACT TTACT TTACT TTACT TTACT TTACT TTACT TTACT TTACT TTACT
1 TTACT TTACT TTACT TTACT TTACT TTACT TTACT TTACT TTACT TTACT
53727 TTACT TTACT TTACT TTACT TTACT TTACT TTACT TTA
1 TTACT TTACT TTACT TTACT TTACT TTACT TTACT TTA
53765 AAAGGGCTTG
Statistics
Matches: 83, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 83 1.00
ACGTcount: A:0.20, C:0.19, G:0.00, T:0.60
Consensus pattern (5 bp):
TTACT
Left flanking sequence: Indices 53177 -- 53676
AAGTATACGATAGCACCATCTCTTCCCACTACGCGCTAAGAAGGAAAAGAAAGGAAAGGACATCA
CACTGATATTTATTCTAGAGATACCAATATCGACAAGTGGAATAGCCGAAGAAAGAGCGGCAGAA
GGCCTAGTACCACCAGAACAGGAAGAGCATAAACTCGGTTCCACAGAAAGGAGAGGAAAGAAGAC
AGGTTCGGAGCCGTTAGTAGCCTAGTCCAATATTCGGGGTAGCAAGTCAAGCAAGTAGGGGTTCC
ACGGTTCAAGGAGAGGGGAATGGTACAAGAGTCTCGAGAGGTCTCATATCGGAAAATGAATGCTA
CGTGTGGCGATTGGAAGTGAGAGTATTGGATCTCGGGCTCATCAATACCGGTTGAGACTGTAGGT
TCGAAGCCTACTGAGCCCATCTTATCAACAAAACTAGGTAAATGCCCTTCGTTGCTTCCCTTGCC
TTTGATTTGGAATGAGAGAGAAGATCGAGTCGCTTCCGCCTGAAC
Right flanking sequence: Indices 53765 -- 54264
AAAGGGCTTGGTCTTCCCCGGCTTACCATTCAAAAAAAGGAAAGTCTCATCTTGTTCACATCATA
GGCAGTAGAAGAGTCCTATCCTGGTCTTAGTTTGTTTGACTCGGTGGTTAAGCAGTGGATGTGCA
AAGATTAACAGAGATCTCATAGGTGCCCTTCTAATCTAAGGCTAAGAGAAATAAAAGATGGCGCA
CGGCGCGTCAGGATGGATAAGGCTTTTGAATCAATAGATGTGTCCGCTTCGCTCTTGTCCATCAG
GTGCAGGTGTAGTACCGTCAAGTGATTTTCTTTTTGCATAAAATCTTATTGTCGCCCCAAAGGAA
GAATCGTTCGTCAGAAAACGCGTACGAACAAAGAGTTCTTGCTCTTTTGGCAGTTGGTGCGTCTA
CTCGTTGGCTACTTTATACCAAACGAGCACCTTCTGCATGGCTGAACTTTGCCTTATGTGGCTTG
GCGAAACAACATCTTTCTATAAAGCTTGCTCCATTGCTTGCTTCT
Found at i:129017 original size:17 final size:17
Alignment explanation
Indices: 128995--129033 Score: 78
Period size: 17 Copynumber: 2.3 Consensus size: 17
128985 AGCAAGGAAG
128995 CTAGCCTATTAGCTATT
1 CTAGCCTATTAGCTATT
129012 CTAGCCTATTAGCTATT
1 CTAGCCTATTAGCTATT
129029 CTAGC
1 CTAGC
129034 ACAGTAGAAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.23, C:0.26, G:0.13, T:0.38
Consensus pattern (17 bp):
CTAGCCTATTAGCTATT
Left flanking sequence: Indices 128495 -- 128994
TATTACTATGAGAAATCGTTCCACCCTATTCTCAGCTCTACTACGATTAGTGCCTCTCAAATTTA
AATGATGGGAAATCCAAGCTATGGCTTTATCCTATAGATATATAGAAAAAAATGAACGAGGATCA
GTCTTCATCCTTTCGCTTTTCAAAGTGAATGATCCCCTCGCTCTTAACCTTTATGTGACCGCAAT
AGCAAGGGACAGGAGCTCCCCCTAGCTCAGTAAGCAAGTGCTACAAACCTTTGAAACTAGAGTAA
AGGTACCCACGGACGCTCATTGTCCTAAGCCCCAGGCATCCGGTTACCTTTCGCGGATCTCCGCC
GCTGGCTTTTGCACTATGGTTACACTTACGGTTACACGAACTTTCCTAAAGGCCCCATCTTTGTC
TCGAGGTCTTTCTTTTCTCACACAAGAAGACAGAAGCTTTTTATACTTCAAATTTATAGAATTGA
ATCTATTTTAAGTCTAGTTCGCCACAAGGCATGCTAGCAAGGAAG
Right flanking sequence: Indices 129034 -- 129533
ACAGTAGAACTAGCGTAGCGGGACATGACAGCGGTTGGGGAGAGGGAAAAGCTATCAGACATCAA
TCCAATGAACAGACAAAGCGGCTTGGCCGAAGGGTCAGGAAGAGAGAACGACTATACTTTACTTT
CTTTCTGAGTTAGAACATTAGGAACCTTACACCCATATGAAAGAAAGCAGCCAAAACAGTAGAGA
AGATAAGAGACGGGTTTAGCGAGAAAAGTCTTTAGCTCCCACCTATCTTTGATGAAAGAAGCAAG
CAAGTTTAGGTAGAAAGAACAGCCAGTGTCAGAGAGATGACTTCTGTTGAACTCTTCCTTTACAT
GAAGGGAATGAATGCCTTAATGGAATGGAATCCGGGATCCAAGTAGATTAGGTTAAGGCAAGCGC
ACTCAAAGCATGAGGTAGGGATCCCTCCCACTCTTCCTAAGACTGAGGCGAAGAGAAGCAGGGCG
GAAGCATCCATCGGCTTCGGATTGTTCTTTTGCTAAGGAATCAAA
Found at i:152113 original size:18 final size:19
Alignment explanation
Indices: 152090--152126 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
152080 TGATGTAGCT
152090 TCTTGTCGATA-CTACTAG
1 TCTTGTCGATACCTACTAG
*
152108 TCTTGTCGCTACCTACTAG
1 TCTTGTCGATACCTACTAG
152127 AGAAATCCCT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 10 0.59
19 7 0.41
ACGTcount: A:0.19, C:0.27, G:0.16, T:0.38
Consensus pattern (19 bp):
TCTTGTCGATACCTACTAG
Left flanking sequence: Indices 151590 -- 152089
GAATTGGTAGAAATTCTCATAGGTGAAGCAAATCAAACCCATTTTCAGACAAAGGAGATAAAAAA
ACAAAACTATAGTGGCTAGGAAAGCTCCGGAGATTCTATGGGAAATTGGAAACGTAGAAGTGAGC
TGTGGCTTATAAAGAGGAAGATGAGGAGATAACGGGCGAAGGAGATTCATGATCAACGATTGGAT
TATAGATTCCAGGGAGAATGCCGCTTTCAAAAGAAAAGAAAATCAACCCGGCTCGACAAAACAGA
AAGTATCATGGTACGTCCGCTAGTCCCCGTTCCCAATCGGAAATGCGGACAGCTAAGTGGATGTC
GAGTCTCGAATTCCTTTTTAATTAGGCTCTATAGTCTGGTCCCTGTCCCTGGTAAGGTCTGATTG
TTATCCGCAAGTCTTGCGCGGAACTTTGCAAAAGTGCTTATTTGGTTGGGAAAGAGAGGACTTCT
GACTCCAAGCCTACCCGAAAACAAGTTTCAGCTATTGATGTAGCT
Right flanking sequence: Indices 152127 -- 152626
AGAAATCCCTTCTATACCACTCAACAGAAGCAAAAATCCCATCAAGATAGATTGAATCGACGACC
TATACTTCAACTAAAGGCACAAGGGAATCAAGGGTTCAAGAGCACAGAACAGAGGAAATGCACAC
GGGTCTCCTTGAAGAACGAAGTCTAAGGTAAAGAAAGAAAGGTAGAGTGGGCTTCTAGTTGCTCT
GCTTGGATTGGCATGGCTGTCCCCCTTTGCTGGTTGAGGCTCGGCCTTTGACGTCTATAACAAGT
TGCCTCTACTTTTCATGTCAAGCGTACAAGTGTAGTTTAGTGGGATTTTCTTCTAAAGACAGGAA
TTCTTTTTCATCTCCTCTCCCGTTGGTCGAGCGGGCGAACTTCTGGGATGTCGTTGGCAAAGGGG
GAAGTTCTTTTCACCCGAACAGACTGAACTCAAGACTTCATATAGGTCGATTGAAGGTTCAGCAG
GTTAGAAAGAATCCGTTCCATGGCGGTTTTCTTCAACTAGTGCCC
Found at i:197368 original size:21 final size:20
Alignment explanation
Indices: 197340--197378 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
197330 ATAGATAGAG
197340 CTCAATTACATCGACCCTCT
1 CTCAATTACATCGACCCTCT
*
197360 CTCATATTACATTGACCCT
1 CTCA-ATTACATCGACCCT
197379 TGCCCTTCGC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.26, C:0.36, G:0.05, T:0.33
Consensus pattern (20 bp):
CTCAATTACATCGACCCTCT
Left flanking sequence: Indices 196840 -- 197339
TCTCCGGATTCGATCTGTTCAGTTCGGGAATGAATTCTCTTTGTCAAGTCGCTTTCCCGGTTGTT
CGGAACGGATCGAAGAATGAGAGAGATTTCTAATCTCGATTTGAAGGGAGTGCAGTTCCATTGTT
CAAGAAAACGGGATTGCAAGCAGCACGGGAAAGATTGGATGGTCCGAAACAGCAATCAATTGATG
GCAGGGATCACCCAGAGGCTCATTCCACTATCGGCCGGTATGGAGAATGGAGATTGAAAGGACTT
TTAGATGAAAGACAGAAAGCCTTACTGATGATTCGACGGACGGAATAAGCTGGCGTACGAAGGAG
GAAGGCAACTATTTCAAGTCAAAGCCTCTAGAAAGAAAGAAAGCATTGGCCCGAACTTAGGACTC
TTATTCCGTTCCGAAGGACAGGCTGGCTTGCATGGCCTAAGCCTAACTTGGGTACTTGACAGGGC
TATATGAAAGGTGTCTTGTGGTTGCAAATCCGTATATAGATAGAG
Right flanking sequence: Indices 197379 -- 197878
TGCCCTTCGCTGATGGTTGTTCGTTCCAGGGGCTAGCGATCAAGAAATTAAGAGATAGGGAGTCC
CTACCCTATAGTAACACCGGGAGACAGAGAACCACCAAAGAAATAAGGTCAGGTCGGGGGCCTAA
CTTGAAACATCATCTTTGAAATGCCTCATTCTCTTTACGGATTACCTTATTGACCTTTCACTCGA
GCTTGAGTCTTCGCTTGAGCGGGTACTCGTCCCGCTTAGGATAGAGGATAGGATACATCCCCTTG
GCGTCTGGGTTTCGGTGGTAGGAGGAATCCCCATAGCTGCCACTGCAATAGCCCTGTCTTCTCTG
TCCGGCGAATATAGAGAGCTTCTTCCCTTAGCTAGATACGGCTCTTTCTTTTTCTGCGAAGCTTG
CCGAGGTTTCTGGCACATCAGTCACCAGAGCTATTTCCTCAAGCTCTGCATCGATCGCATTGACC
GCAATTTCGAATGTTTCAACGTCTTCTTCATTCCATTTTGGACGT
Found at i:227635 original size:17 final size:18
Alignment explanation
Indices: 227613--227655 Score: 54
Period size: 17 Copynumber: 2.5 Consensus size: 18
227603 TGGGGAAGAA
*
227613 AGGAAATCTT-TCTTTAT
1 AGGAAATCTTCTATTTAT
227630 AGGAAAT-TTCTATTTAT
1 AGGAAATCTTCTATTTAT
*
227647 AGGGAATCT
1 AGGAAATCT
227656 GTGCTTACTA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
16 2 0.09
17 19 0.86
18 1 0.05
ACGTcount: A:0.33, C:0.09, G:0.16, T:0.42
Consensus pattern (18 bp):
AGGAAATCTTCTATTTAT
Left flanking sequence: Indices 227113 -- 227612
CAAGAACTGCTTCGGATCAAAGAACTATCTTCCCTTTCGACAACAGCTAAATCGCGATGCCACTT
GGCTTGGGGCCGTTCCCTAAAGAATGTCTTTCCCTGGAGCCAGGTAAGTTAAGTAAGGACTTTGC
CGGGGGATTTCACTCAAAACTTTCCCAAGAGCCTTTTGTGCTTTAGCATTGTACCCTTGGATTAT
AGTCTTGGTGTGGATTTCCTGGGCGGAATGCCTAGGTAGGCGAGAGTACGGAACGGCATAACGTT
AACTGCCGACCCCGGATCGACCTAGAATCAGTCTTTTGTTTGCTGGCTTGACTCCAGAACTAGTA
GAGGAAGGAAGCGATGATCGGTCTATCCTATTAAGCGTAATCCCGTTAGCCAATGAAAGGACTAC
CTTTCTTGGACTGTGAGCGACGACACCAGATCAGAGCTAAGCGAGAAACGAGAAGCTGCGGTGAA
TCAATCAGTATTAGCTAAGGAAAGCATTCTAATTCTGGGGAAGAA
Right flanking sequence: Indices 227656 -- 228155
GTGCTTACTAAGCCTTTGTTTGAAGGACCGGTCTGAAAGTGCAAGACTAGCTGGACCCGGACTGA
CTAATCGCTAAGAGCTCATCCCGAGTTCTCTCGGGACGGGATAACTCTCAGTACGGCATTCAGTA
AGAAGTTAGCCAAGTTCTGTTAGCCGTTACGTTAGGGTGACTCGAGAAAGTTTGAAAGGGAATTC
CGATAGAATCATAAGTAGTTGCATTCCCAGCCCCAACACATCCACTTTTCTTGTCTTAGGCACCT
CTTTCTTACTCATTCTGGGCAAGAGGTCATGCCTTTTCGGGTACCCAATTCGAAGTTCACTTCTT
CAACTTCTCCCTGATTTACTGAATGACAGGCTGATGACTCCCAAGAGCGTGAAAACCCAACTCAT
TTCTCGCATTTGATCCTTGACAAGAAGTTCCGTCGAGCGAATGGGCTACTTCTTGTTCCTGTTCG
TCTATTCGGGACGGGGCAGGCAGCCCACATACATGAAGAGAAGAA
Found at i:242580 original size:30 final size:30
Alignment explanation
Indices: 242546--242647 Score: 204
Period size: 30 Copynumber: 3.4 Consensus size: 30
242536 GCAGCAATCG
242546 GAGGAGATGAAATCCGCTCGACTGTAAGGA
1 GAGGAGATGAAATCCGCTCGACTGTAAGGA
242576 GAGGAGATGAAATCCGCTCGACTGTAAGGA
1 GAGGAGATGAAATCCGCTCGACTGTAAGGA
242606 GAGGAGATGAAATCCGCTCGACTGTAAGGA
1 GAGGAGATGAAATCCGCTCGACTGTAAGGA
242636 GAGGAGATGAAA
1 GAGGAGATGAAA
242648 GTTTGCCACT
Statistics
Matches: 72, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 72 1.00
ACGTcount: A:0.35, C:0.15, G:0.34, T:0.16
Consensus pattern (30 bp):
GAGGAGATGAAATCCGCTCGACTGTAAGGA
Left flanking sequence: Indices 242046 -- 242545
CGTTCGCCACTTTATTCTCAACTCTTCTCACCTCCTGGGCGAGACAGGCTACCTTTAGCTAGGAG
CCTCTTTTCCTTCTGTCCAGCTCCCCGAAAACAACGTTCGACTTGCATGTGTTAAGCATATAGCT
AGCGTTCCTTCTGAGCCAGGATCAAACTCTTCTTTTGACTATGATTTGGCCCTAGAGTGGTAGAA
CCTGGTGAACCGGGCGTAGTACTTCCCAACCTTCTGTTTTCTTTTCTTCTCTTATGATTTTTGCT
ACTTTGTTTAGTTTAGTGATTGATATCTTAGAGAGTCTCAGTCTAGTCACTCAACTAATCCACTC
GTGGAGTGCTAGTGGTATAGTAGTTGTGTGGTAGTTGAGACTCCGCCCCTTCTTCTTCAGTAAAG
CCGAGCCCTTATATTGATTACGCCAAACATAGCTTTAGAGGCTCTTACTAGATAGGGCGGCAGAA
TAGAAGTCTCACTACTAGCTTTTAGTCCTAAGCAAGCAGCAATCG
Right flanking sequence: Indices 242648 -- 243147
GTTTGCCACTGTAGTGTTAGAGCCGGATGGAATGCCTTCTAACCAATTAGATGGAGCTAGCTCTT
TGCCGGTAGCTACCGATGCTCGATGAATCAACATCTCTGAAGCAATTCCTTCTTCTTGTTCCTCC
TCTCGCGTATAGCTGTATATGAGATGTTCTGTGTCTAAGATCGTCTCTCTTTTTGTATGCGGATT
AGAAAGAAGGGATTATAACGAGTAATATCTCGCCCTCTTTCTGCTGCCTTTAGTCCTGTCTTTAT
GAGTGGATGTTGTTGGCATTCCTATCCTAGCTGCTAGTAGGAAGCATCGGATAATCCTACGCGGT
CTTACCGCTCTTAGTTCTTGGTAGCTAGTGGGAATACCGCTCCGTGGGGCAACTTGCTACTTTAG
GTTTAGAACAATCTGGAACCCATTAGAAGCCCTTATATCTTGCTGCTAGGCGAATGAAGCGAGCT
TTTCAATCCTTTAGGACTAACCATGACTTCCTTGACTGCCCTTGT
Found at i:244040 original size:6 final size:6
Alignment explanation
Indices: 244029--244056 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
244019 TGGTTTCCCT
244029 GAGTAG GAGTAG GAGTAG GAGTAG GAGT
1 GAGTAG GAGTAG GAGTAG GAGTAG GAGT
244057 CCCCCCTTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.50, T:0.18
Consensus pattern (6 bp):
GAGTAG
Left flanking sequence: Indices 243529 -- 244028
TCTTTGGTTACTCAACTCGTAGTCGATCTTCCAACCGAAAAAGCTAGGATCTAGCTAAAGGTCTT
ATTACTGGCTAGCTGAACTAAGGAGAAGAAACTCTAGAAGAAAAAGAGCCAGTCCACTTATAAAG
AGTTAGATTAGGTGAGCTGCTTTCGCTACTGACAACCTTGTTTAGAACTTGGATGGCAAAGCAGA
GCGTAAAAAGCCCTCAGTCTCCGTAAAGGGCCTCGATTCCCTAGAGGTCGACTCTTGCCACAAGG
AATGTCATCGCTTTTCGGCCGTTCTACGATATTCCTTGCAGGATGGAACTTTTCTGTTGACCTAA
CTTTCCAGTGAGCGGACCTACTCGAAGGAAGGACAAAGAGGGGGGTTGGGGGTGCTTCTATCTAA
TCTCTAATCCGGGTCTTACCCCTGCTGCTACAAATGGGTTTTTCTGCACCATATTTTGATCTGCC
TCTCTGCTCAATCTCCTAAGGGCGGGGACGGGGGCTGGTTTCCCT
Right flanking sequence: Indices 244057 -- 244556
CCCCCCTTTTCGGTTAGTATGGTGGCGGATCTCCAGCTCCACTCCTTTCCAGGAGTATATGAAGC
GAATATCAACCCCCTCCGAGAGGGCCGCCCTCTCGAGCTCCCTGCGGTCCCGCCTGTGTATCCAC
AGGGCCAAAAAAAGATAGAATAAAAAAATCGCTTGGAGGAGGAGGACGAAAAGCAAAAAGATTCT
GGTTTATACCTTCTATCTCCGCTACAAGTTAAGGAAGGTTGGTCTAACTCAGTTTATACATGAAA
CGCTACCTGATTGTCCCGATATCATGCTTGAGACTTGCTCTGATCCAGATATTCTTTGTGTGGTT
ATGCCTGATCAAGAGGATGGATTGGTGTTAATCCCTAATGTTATTCCGTCTTTCTCATGGTCGCT
TGCCAAAAGAGGGTTACCGATTCGAAAATATGGATGATTCCTTTTAGAAAACCCTACTTTCCTGC
TTCAACAAATGGGAAAGGTGGAAAGACTGTACAGGCTTGACTTAA
Found at i:262128 original size:19 final size:19
Alignment explanation
Indices: 262104--262141 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
262094 AGAATTTCAT
262104 CTTTTTAGTTGGAACTTTA
1 CTTTTTAGTTGGAACTTTA
262123 CTTTTTAGTTGGAACTTTA
1 CTTTTTAGTTGGAACTTTA
262142 GGCGGTTCTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.21, C:0.11, G:0.16, T:0.53
Consensus pattern (19 bp):
CTTTTTAGTTGGAACTTTA
Left flanking sequence: Indices 261604 -- 262103
CTTTGAGGTTCTTATAGATCTAATTCATTGAAATTTCATCCAATAAAACGGAAGAATTATAAATC
TCCAAAATAATAGATAGAAATATCGCAAATAGGGCCATTGCGACACCCATCAAAGGAGTCGTTCC
CCATCCAGGAGCTACTTTACCATATTCCGAATTCAATGGTTTCAATAAATTCCCTACAGTAGTTG
GTTTTGGACGAGATCTAGAACCGTTCTCAACAGTTTGTGTAGCCATAAATCCTATTGTATTCATT
GAGATCTGTTGACTTTGTATACCATTCCGTTGTAAATAAACGATCTTATCATAGATCCGTTGTGG
TCTTGAAATTATATAATAATGGAAACAGCAACCCTAGTCGCCATCTTTATATCTGGTTTACTTGT
AAGTTTTACCGGGTACGCCTTATATACCGCTTTTGGGCAACCTTCTCAACAACTAAGAGATCCAT
TCGAGGAACATGGGGACTAGTTGAAGTAATGAAAAAGAATTTCAT
Right flanking sequence: Indices 262142 -- 262641
GGCGGTTCTCTAAAAAAGATAGCGAAAAAAATGATACCTAGAGTCGAGACTAAGAGGAATGTATA
AACCAATGCTTCCATAAATTCGATCGTGGTTTACAATTATAGCTTCCATACCTGTTTGTTTTTTG
TTTATTTTTATTTGTGATCATCTCCCGGATAAAGAAAGGGCAAGAGTCAAAAAAGGGTGATTCAA
ATCAAGATTTCTCTGGTACCCTATATTAGAAAATTATAAAGAAAGATCAAATCACAAAAAGAAAA
ATACAGTCGAAAGACACCAAAGCAATGGTGTATCAGACTACTTGTCTTCTTGTAGTTGGATCTCC
CAGTTTTTGGAATGCTCCAAATTCTACTTGAGCATCCAAATCTGGATCAATACCAGCAAAAACAT
CTCTGAACAAGGTTCTAGCACCATGCCAAATATGTCCAAAAAAGAAGAGCAAAGCAAAAGAAGCA
TGTCCAAAAGTAAACCAACCCCTCGGACTGCTACGAAAAACACCA
Found at i:264328 original size:14 final size:15
Alignment explanation
Indices: 264297--264329 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
264287 CTATGTATAA
264297 AATATGATAAAGGAC
1 AATATGATAAAGGAC
*
264312 AATATTATAAA-GAC
1 AATATGATAAAGGAC
264326 AATA
1 AATA
264330 AACCCATTGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 7 0.41
15 10 0.59
ACGTcount: A:0.58, C:0.06, G:0.12, T:0.24
Consensus pattern (15 bp):
AATATGATAAAGGAC
Left flanking sequence: Indices 263797 -- 264296
ATTGGATCAAGAACAGGGTCAGAGGGATCAAAAACTGCTAATTCATATAGAGCCATCGAACCCGC
CCAACCGGCAACTAGAGCTGTATGCATTATATGGACAGAAAGCAACCGGCCGGGATCATTCAATA
CAACGGTATGAACACGATACCAAGGCAAACCCATGGAAATACCCCTTATTTATATCAAAGAAAAA
AAGACACTACGTAACTTTATTGCATTGGAAAAGACTATACTATGACTATGACTATGTTCCCCTGT
TCAGGGGATTGTTTCAGAGCAAGGGTTAATATTTGTTCTATTCTGTTGGTAATAATGGAACGATT
CCGTTCGTAGGAACAAAGAGAAGCAGATTTATTCTATACTCGATAAGTACCAATACGCAATGGGG
AGGTTGATACCGTTTTCTATGAGCGAATGCGTCCATACTTCTTCATCATTAGAAGGGCCTATTCA
TAAGAATTTTCCCTTATTTATTCTGTATTTCTAATCTATGTATAA
Right flanking sequence: Indices 264330 -- 264829
AACCCATTGTTACGTTTCCACATCAAAGTGAAATATAGTACTTAATTCTTTTTTCTTTTTTTTTC
ATGCCTATTGGTGTTCCAAAAGTACCCTTTCGAAGTCCTGGAGAGGAAGATGCATATTGGGTTGA
CATATAGTGCGACTTGTCAGATATATTGGGTCATATGGGATTTCCCCGTTCTCTCCCCCGATCGA
GATATCCTCTGTTTCGCCCAAGAAAGATTAATTGAATCATCAAAAATTTGGAGCGTGAAGTGCAA
TTAGACCCATTTTTTGAGGGGGTTCAGATTACTATTACCAATTAGAATAATTTATGGTTGGCTTG
GTTGGACTAATAAAATGAAGTATCCAGGCTCCGTTTAGAAAAAACCCAATTGGAAATAGATCTAT
GATTACTACTTGTATCATAAGCGGTTGCTATTTGTAAAGAGAAGCGATCTCAAACTCTTAATCAA
TCGAGTAATATGCACGAATACATCAAATATTTGGCGGAAGCATGA
Found at i:268355 original size:21 final size:21
Alignment explanation
Indices: 268329--268369 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
268319 AAACGCCTAC
268329 GAAAAGATCGCTTGGATTTAA
1 GAAAAGATCGCTTGGATTTAA
*
268350 GAAAAGGTCGCTTGGATTTA
1 GAAAAGATCGCTTGGATTTA
268370 TCCATGGTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.34, C:0.10, G:0.27, T:0.29
Consensus pattern (21 bp):
GAAAAGATCGCTTGGATTTAA
Left flanking sequence: Indices 267829 -- 268328
GGAGTTCCCCGGAGAATGAACTCCGGGAGGGTAGAGTCAAAATTAATATGATAAAATATGCTAAA
CTAAAGTAGTAAAAATGAATGAACACACTCGATAAAAAAGGATTTATTCTTCCCCGATTCTTTTT
TTTTCTTACGACACGATAATCAAATCTGGATTTTCGTATTTTTCGAACAAAACATCAACCCGCGT
TTGAGTTCGGATTGGAATTTTGATTCAAGTGAAGAAAGAGTAAGCCTATTTTTTTCTGGCTCTAA
GACCAGCAGTTCTAGCGGTCGACTCGGTTCTTTCAAATTGTTTATCATTATTAAGAAAAGGTAAC
AAAGATAAAATACGAGCTTGTTTTATAGCAATAGTAATTAATCGTTGTTGTTTCAAGGTCAATCT
ATTCACCCGTCTAGATAATATTTTTCCTTGTTCACTAATAAATCGACTAATTAAACTCATGTTTC
TATAATCAATTCGATCCCCCGATTGGATCGGGGGCAAACGCCTAC
Right flanking sequence: Indices 268370 -- 268869
TCCATGGTTTGTTTACTGTATTCCTTATCTCGAAAATCCTATTTCGGTCGGATCTAAAATGAATT
AGAATAAATAAATAGGATTTGGTTTGTTTATATTTAAATATGTTATATATATAATGTAATTTTTT
CCCCTTCCAAGGAAGGGTTACATACAGGCGCTCGATTTGATCTATTTCTTTATCTCCCCATGAAT
CGTATGTTTGTAACAATATGGACAGAATTTTCTCAATTCCAATCGATTAGGCGTATTGTGCCGGT
TCTTTTGAGTAATATATCTGGAAATACCCGTTGATACCTTATTAACACCGTTTCGAACACAACTG
GTACATTCCAAAATAACGGTTATTCGGACATCCTTCCCCTTGGCCATGAACCTCCTTTTTCTTTT
TTGATTTTTGATTTACTCAACTCTTCTATTTTCGATCTGAAACGAAGAAGAAGAAAGGAAGGAAA
AAATAGAAGTTACTAACTTGAAATCCAATTATGAAAGATTTCGCT
Found at i:269109 original size:17 final size:17
Alignment explanation
Indices: 269084--269116 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
269074 CCCTTATTCT
269084 AAAAAAG-AAAAGGGGA
1 AAAAAAGAAAAAGGGGA
269100 AAAAAGAGAAAAAGGGG
1 AAAAA-AGAAAAAGGGG
269117 GGCGAAGGAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.33
17 2 0.13
18 8 0.53
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (17 bp):
AAAAAAGAAAAAGGGGA
Left flanking sequence: Indices 268584 -- 269083
GGACAGAATTTTCTCAATTCCAATCGATTAGGCGTATTGTGCCGGTTCTTTTGAGTAATATATCT
GGAAATACCCGTTGATACCTTATTAACACCGTTTCGAACACAACTGGTACATTCCAAAATAACGG
TTATTCGGACATCCTTCCCCTTGGCCATGAACCTCCTTTTTCTTTTTTGATTTTTGATTTACTCA
ACTCTTCTATTTTCGATCTGAAACGAAGAAGAAGAAAGGAAGGAAAAAATAGAAGTTACTAACTT
GAAATCCAATTATGAAAGATTTCGCTGCAATCAATATAGTAAATAATATACAAAGATTTCTAAAC
TAAATTTCAAATCATAGTACAGTATTTCATTTACATTTAAGTATCTTGTATAAGAGCCTTGCCCT
AGACCTAGACCCCACATTGTTTATTCTACCTACATCCCTATTTAATTCGAACTTTAACCCAAGTC
TGGCAGCTGTTACTTTTTCTTTTTTTCTCTTTCCTCCCTTATTCT
Right flanking sequence: Indices 269117 -- 269616
GGCGAAGGATTAGTCACAGATATTTAATTGTATCCCTAATCTTTGTTATTCGTTACCGTGTCAAT
AACTAGAATCAAAAAAAGGGGAATGTCAACGCATCTGGGAAAAAACGATTAATCTCTATCAATAG
ACCTGCTAAAGACCCGAACCATAGAGTACTTAATACCGGTGCCACGGAGAGATATGTTTTTAGAT
CTCGCATTGAAAAACCTCCTTCTTTTATTGTAATATATATTCTATTGTAATATATAATGGTAATA
CATATATGATCAGATGCATATGCAGTTAAGGACCGCTTATAGTTGTACACGCAATCCCTAATTCA
AATGGAAATGTACAACGATCCGGTGAATAAGATTTTCTTAAAACAACATAAAAAAAGTCCCCGAG
CATTCCCGAAAATACTCATTTATTTTTACGACGGGTTCCGTTCCGTATTTCATATGTATATAAAT
AAGTCTTTTACTATTATTATATAATAAATGAGACCAAAAAGACGA
Found at i:317054 original size:23 final size:23
Alignment explanation
Indices: 317009--317054 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
316999 ATCACTAACT
* ** *
317009 AATACTAATCTAATCTAATAGAA
1 AATACTAATATAATAGAAAAGAA
317032 AATACTAATATAATAGAAAAGAA
1 AATACTAATATAATAGAAAAGAA
317055 CTGTCTTTTC
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.59, C:0.09, G:0.07, T:0.26
Consensus pattern (23 bp):
AATACTAATATAATAGAAAAGAA
Left flanking sequence: Indices 316509 -- 317008
GCGCCAAAGATCTTACCATTTCCGAAGGAACTGGAGTTCCGTCTCTTTTCCATTTCCATTCAAGA
GTTCTTATGTGTTTCCACGCCCCTTTGAGACCCCGAAAAATGGACAAATTCCTTTTCTTAGGAAC
ACATACAAGATTCGTCACAAAAAGGATAATGGTAACCCCACCATTAACTACTTCATTTATGAATT
TCATAGTAATAGAAATACATATCCTACCGAGACAGAATTTGTAACTTGCTATCCTCTTGCCTAGC
AGGCAAAGATTGACCTCCGCGGAAAGAATGATTCATTGGGATCGACATGAGAGTCCAACTACATT
GCAGTGCCAGAATCCATATTGTATATTTGAAAGAGGTTGACCTCCTTGCTTCTCTCACGGTACAA
CCCTCTTCCCGCTGAGCCCCCTTTCTCCTCGGTCCACAGATACAAAATGTAAGACTGGCGCCAAC
AGTTCATCACGGAAGAAAGGACTCACTAAGCCGGGATCACTAACT
Right flanking sequence: Indices 317055 -- 317554
CTGTCTTTTCTGTATACTTTCCCCGGTTCCGTTGCTACCGCGGGCTTTACGCAATCGATCGGATT
ATATAGATATCCCTTCAACACAACATAGGTCATCGAAAGGATCTCGGAGACCCACCAAAGCACGA
AAGCCGGGATCTTTCAGAAAAAGGATTCCTATTCAAAGAGTGCATAACCGCATGGATAAGCTCAC
ACTAACCCGTCAATTTGGGATCCAATTCGAGATTTTCCTTGGGAGGTATCGGGAAGGAATTGGAA
TGGAATAATATCGATTCATACAGAAGAAAAGGTTCTCTATTGATTGTACCTATGGGATATAGGAA
GAGGAAAAACCGAAGATTTCACATAGTATTTTTGATCGAAAAATCAATCTGATTTATTTCGTACC
CTTCGCTCAATGAGAAAATGGGTCAAATTCTAAAGGATCAAACCTATGGGACTTAAGGAATGATA
TAAAAAAAGAGAGGGAAAAATATTCAATAAAAAGAAATAAAAAGA
Found at i:326791 original size:34 final size:34
Alignment explanation
Indices: 326748--326833 Score: 163
Period size: 34 Copynumber: 2.5 Consensus size: 34
326738 CGACTCTTCC
*
326748 TTTGTTTCCTCCACTAGGCTTGGTCGAGTGAGCT
1 TTTGCTTCCTCCACTAGGCTTGGTCGAGTGAGCT
326782 TTTGCTTCCTCCACTAGGCTTGGTCGAGTGAGCT
1 TTTGCTTCCTCCACTAGGCTTGGTCGAGTGAGCT
326816 TTTGCTTCCTCCACTAGG
1 TTTGCTTCCTCCACTAGG
326834 GTCTCATAGT
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
34 51 1.00
ACGTcount: A:0.12, C:0.27, G:0.24, T:0.37
Consensus pattern (34 bp):
TTTGCTTCCTCCACTAGGCTTGGTCGAGTGAGCT
Left flanking sequence: Indices 326248 -- 326747
GGAGTGATGGTTAGGCCAAGGCCAAGAGAACCCTTCAGATACCGCAAGATGCGTGCCTGGAGATG
TACGGTGGTGAGAGAGTGCATGAACTGACAAACTTGATTGACAGCATAGCAGATGTCAGGTCTGG
TGAGAGTGAGGTACTGAAGGGCGCCAACAACAGACTCCTCCTTCTTTGACAGCTCTTTCAACAGC
ACGACGTATCTTGGCCGAGATTCCGCCTTTTACTGCTGATGTAGTGAAGCTTCCGGCCACTGCTT
CCACAGCAAGACAGGTCCTAAGGTAGTTTTAGTGTACCTCTTCTTCTATTCTAGTATGCCACTCT
ATACCTTAGTATCCCGATCTAGTGAGTTGTCAGAATCTTCCTTGTCTAAATCAAAGTCTTGATCT
TCTCCTATCTTTCGGCAAGAGTAGGTCCCTTATTGTGATCTTTTCTTCAGTCTTACGTCACCGAG
GGAAATTAGCCAATCAGTATGTAGTTAGCCTTTGTCGACTCTTCC
Right flanking sequence: Indices 326834 -- 327333
GTCTCATAGTATGGCCCTTCCAGTTTAGAGTATAGAGAGAAATGCCATATATAAGATAGAATATG
AAATCTTAGTAGTAAGTACCCTTTATTGAGTCCCTTTCTTCCTTCTAAGGAGTAACGAATTGGAT
TTGAACCAATGCTTCGGGTCTAGTGACTTTCCCCGTGAACTTCCATTATTCGATCGTTACAGAAA
AGCCTGTTGAAATCGATTGCTTTGCTCTACTCTATATCGAGGAGCCTTGCAGAGACAGAGAATAG
AAAAGAAAAAAAGAGCGATTGAGAATCTCGAGAACCTTTCTGAACGTCTGGGGCAATTTGAAAAG
GAGTATATCTTTCTTGTAGTGCCTTCCATTCCACTATTCTGATCAAGAAAGAATCTCTTCCGAAC
GACCAAGTAATAATGAGATTAAAAACCGATGCTTCTTTGGCCGTGTGGAACATGGATTAGCATTA
TGTCATTCCTACAAGTGATCCCCCATCCAGGATTGGAAGAAGTGC
Found at i:456367 original size:30 final size:34
Alignment explanation
Indices: 456295--456377 Score: 102
Period size: 36 Copynumber: 2.5 Consensus size: 34
456285 TGTGATATTG
* *
456295 GATGAGAGTGTTAAGGGGGTATTGGATGATGATCAA
1 GATGAGAGTGTTAAGGAGATATTGGA-GATGAT-AA
456331 GATGAGAGTGTTAAGGAGATATT-G-GATGAT-A
1 GATGAGAGTGTTAAGGAGATATTGGAGATGATAA
456362 -ATGAGAGTGTTAAGGA
1 GATGAGAGTGTTAAGGA
456378 AGGGGTATTG
Statistics
Matches: 45, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
30 16 0.36
31 1 0.02
33 6 0.13
35 1 0.02
36 21 0.47
ACGTcount: A:0.34, C:0.01, G:0.37, T:0.28
Consensus pattern (34 bp):
GATGAGAGTGTTAAGGAGATATTGGAGATGATAA
Left flanking sequence: Indices 455795 -- 456294
CGCCTGATCCTGATAATAAGAAATCTAATACAGTTCAGTATCAGGATGAAATAATCAGGTTATTA
CATGATAAGAAGGATATATTCCCATGTTATCCTAGAGAACAGAGAATTTCTTTTCAGTTAATGAT
TGAAGAAATGAGTATGGATTACAATGAAAGGAATTTACATAAAACCTCTCCTAACTTGCTAAAGT
TATTGATTAGTAATGATAAGACTACTGCTAAAGAATATCTCAAGAACAATCTCCCAAATGAGGAA
CTACCTCTTATTCATAACTTGAAAGCCTATACGCTGGAGTCCATCATTATTTATGTACTAGGATT
ACTCTTCAGCTGTATTAAGGATAAACCGGTTGTTAGGCTCGCTACTTTGCTGGATCGAATGGATT
ATGCTGTACGAATGAAAGCTCTTAGTGGTGATATGGGTGCAGCGATATTGGATAAATAGAAAGAG
GATAGTGAAGGTGCGAAGCCGCTCGGAGAGGATTCTGTGATATTG
Right flanking sequence: Indices 456378 -- 456877
AGGGGTATTGAAATCCAAAGAAGAGGATAAGGGTCAAGGTAAAGGCAAAAAAGGTAAAGGTAAAA
CCTTCTTTAATAGCGAGAGGAAAGGTGAAGTGAAAGAAAAAAAGCAAGGATGTTCTATCGGGGTC
CACTTGGTCCACTTCTTGGTGGAAAGCAAATTTCTAAAGCTATACACTGATTTGAACTTAACGAA
ACTAATCAGTATTAACGATCAGAATTTTTACGCTAAAAGTTGTTATGCTATGTGTAATTTTGACT
TCAGCCTCCTGCCTATTAAACTCAATCTACCGATGGTTTGCAAGCCCAAAGATGGGTCTATTAAA
AAGGAGAAATACGAGACTGTAGATCAAAATCGTTATATATCGTTATCGGATATCGCAGGGGGTTA
CTTAAAAGAGTACCCGACTTTTGTGTATAATAGGTTTAAAGTATTAACAAGCCATAACACTTCTT
TTTTCAATATATTATTAAATAGAGAGGTCAATTTTCTCGTATTTC
Found at i:456433 original size:15 final size:15
Alignment explanation
Indices: 456413--456442 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
456403 GATAAGGGTC
456413 AAGGTAAAGGCAAAA
1 AAGGTAAAGGCAAAA
*
456428 AAGGTAAAGGTAAAA
1 AAGGTAAAGGCAAAA
456443 CCTTCTTTAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.60, C:0.03, G:0.27, T:0.10
Consensus pattern (15 bp):
AAGGTAAAGGCAAAA
Left flanking sequence: Indices 455913 -- 456412
TCAGTTAATGATTGAAGAAATGAGTATGGATTACAATGAAAGGAATTTACATAAAACCTCTCCTA
ACTTGCTAAAGTTATTGATTAGTAATGATAAGACTACTGCTAAAGAATATCTCAAGAACAATCTC
CCAAATGAGGAACTACCTCTTATTCATAACTTGAAAGCCTATACGCTGGAGTCCATCATTATTTA
TGTACTAGGATTACTCTTCAGCTGTATTAAGGATAAACCGGTTGTTAGGCTCGCTACTTTGCTGG
ATCGAATGGATTATGCTGTACGAATGAAAGCTCTTAGTGGTGATATGGGTGCAGCGATATTGGAT
AAATAGAAAGAGGATAGTGAAGGTGCGAAGCCGCTCGGAGAGGATTCTGTGATATTGGATGAGAG
TGTTAAGGGGGTATTGGATGATGATCAAGATGAGAGTGTTAAGGAGATATTGGATGATAATGAGA
GTGTTAAGGAAGGGGTATTGAAATCCAAAGAAGAGGATAAGGGTC
Right flanking sequence: Indices 456443 -- 456942
CCTTCTTTAATAGCGAGAGGAAAGGTGAAGTGAAAGAAAAAAAGCAAGGATGTTCTATCGGGGTC
CACTTGGTCCACTTCTTGGTGGAAAGCAAATTTCTAAAGCTATACACTGATTTGAACTTAACGAA
ACTAATCAGTATTAACGATCAGAATTTTTACGCTAAAAGTTGTTATGCTATGTGTAATTTTGACT
TCAGCCTCCTGCCTATTAAACTCAATCTACCGATGGTTTGCAAGCCCAAAGATGGGTCTATTAAA
AAGGAGAAATACGAGACTGTAGATCAAAATCGTTATATATCGTTATCGGATATCGCAGGGGGTTA
CTTAAAAGAGTACCCGACTTTTGTGTATAATAGGTTTAAAGTATTAACAAGCCATAACACTTCTT
TTTTCAATATATTATTAAATAGAGAGGTCAATTTTCTCGTATTTCAGTTGAACTGGATCTGGAGA
AGCCTCTTGTCCCTAAGGTTAAGATAGGGAACAGATGGTGAAATC
Found at i:474271 original size:27 final size:27
Alignment explanation
Indices: 474233--474285 Score: 97
Period size: 27 Copynumber: 2.0 Consensus size: 27
474223 AGAAAACGAT
*
474233 CCTCTTGCTCCTGAAGTGGTACCTGAG
1 CCTCTTGCTCCTGAAATGGTACCTGAG
474260 CCTCTTGCTCCTGAAATGGTACCTGA
1 CCTCTTGCTCCTGAAATGGTACCTGA
474286 ACCGGGTCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.17, C:0.30, G:0.23, T:0.30
Consensus pattern (27 bp):
CCTCTTGCTCCTGAAATGGTACCTGAG
Left flanking sequence: Indices 473733 -- 474232
TATCAACAATCCTGGAGAACCACCTTGATACTCTCGACGTTGATAGGCGCTTACGGGAAATACGC
CGGTGGGAAAAAGAAGAGGAACTGGGTTCCCCCGAGAGCTCATTTTGGCTGATGGTGGTTGAGGA
AATTACAAAGTGTTAGGAGGGTTTTAGAAAAAGGTGGGTTAGAAAGAAAGATCGAAACAGATGCA
TTCTTAAAAGAAAACGCTTTCTCTTATATATCTAAATAATATGATGGGATTTCGAATTCGATTTC
TCGCGGTATTCTCCCTCTACTCGATTTAAGAATCAGAATCGGGCCATGGAATCTGTAACTATTAC
AGCGGCAGCGACTGCCGTAGTCGCTATTTCTGCCGTGCTTTTCACGGCGGCTACGACTTTTTTTT
GCAGAAAACTTAGTCTTAGTAGAAAACGACCAGGGGAAGAGGACGCCCTTTCCTTCGAGCCCGCT
TCCCAGCGAGCAAGATTAGATGATGCAACTACATCAGAAAACGAT
Right flanking sequence: Indices 474286 -- 474785
ACCGGGTCGAAGGGGCTCCTGATTTGGATCAGGTAATAGATTTAGACTGGGATCTGCCAGATGTC
AATATAAATCTGGGTAGCAGTGACAGTGAATCTCTCTATTATGATCCCTTTTTCAACGATTTTAT
TCAATATAACGAAGTTTCTTATAACCTAAATATATATCAGATTTAGTACAGATACATCCCTTAAT
TCTCCCGGACCCGCATAGGGTCACTCTCTTTGAGATCGTGAAATTGACTTTCCTAGACGACGAAG
AGGAGAATCCTGCCTTCTTAGAGGACGTCTTGCAGGATCTTATGACGATGGGCTCTAACTCGGAG
TTCTTTGGCTGGTTTCTCGAGGGACTCCAATTTTGCGTTTACGGTGAATTTTAAGGGGACTTCAT
CTCCTCTCCTTACAGTCGAGCGGATTTCATCTCCTCTCCTTACAGTCGAGCGGATTTCATCTCCT
CTCCTTACAGTCGAGCGGATTTCATCTCCTCCGATTGCTGCTTGC
Found at i:474707 original size:30 final size:30
Alignment explanation
Indices: 474671--474771 Score: 202
Period size: 30 Copynumber: 3.4 Consensus size: 30
474661 TTAAGGGGAC
474671 TTCATCTCCTCTCCTTACAGTCGAGCGGAT
1 TTCATCTCCTCTCCTTACAGTCGAGCGGAT
474701 TTCATCTCCTCTCCTTACAGTCGAGCGGAT
1 TTCATCTCCTCTCCTTACAGTCGAGCGGAT
474731 TTCATCTCCTCTCCTTACAGTCGAGCGGAT
1 TTCATCTCCTCTCCTTACAGTCGAGCGGAT
474761 TTCATCTCCTC
1 TTCATCTCCTC
474772 CGATTGCTGC
Statistics
Matches: 71, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 71 1.00
ACGTcount: A:0.16, C:0.35, G:0.15, T:0.35
Consensus pattern (30 bp):
TTCATCTCCTCTCCTTACAGTCGAGCGGAT
Left flanking sequence: Indices 474171 -- 474670
TTTCCTTCGAGCCCGCTTCCCAGCGAGCAAGATTAGATGATGCAACTACATCAGAAAACGATCCT
CTTGCTCCTGAAGTGGTACCTGAGCCTCTTGCTCCTGAAATGGTACCTGAACCGGGTCGAAGGGG
CTCCTGATTTGGATCAGGTAATAGATTTAGACTGGGATCTGCCAGATGTCAATATAAATCTGGGT
AGCAGTGACAGTGAATCTCTCTATTATGATCCCTTTTTCAACGATTTTATTCAATATAACGAAGT
TTCTTATAACCTAAATATATATCAGATTTAGTACAGATACATCCCTTAATTCTCCCGGACCCGCA
TAGGGTCACTCTCTTTGAGATCGTGAAATTGACTTTCCTAGACGACGAAGAGGAGAATCCTGCCT
TCTTAGAGGACGTCTTGCAGGATCTTATGACGATGGGCTCTAACTCGGAGTTCTTTGGCTGGTTT
CTCGAGGGACTCCAATTTTGCGTTTACGGTGAATTTTAAGGGGAC
Right flanking sequence: Indices 474772 -- 475271
CGATTGCTGCTTGCTTAGGACTAAAAGCTAGTAGTGAGACTTCTATTCTGCCGCCCTATCTAGTA
AGAGCCTCTAAAGCTATGTTTGGCGTAATCAATATAAGGGCTCGGCTTTACTGAAGAAGAAGGGG
CGGAGTCTCAACTACCACACAACTACTATACCACTAGCACTCCACGAGTGGATTAGTTGAGTGAC
TAGACTGAGACTCTCTAAGATATCAATCACTAAACTAAACAAAGTAGCAAAAATCATAAGAGAAG
AAAAGAAAACAGAAGGTTGGGAAGTACTACGCCCGGTTCACCAGGTTCTACCACTCTAGGGCCAA
ATCATAGTCAAAAGAAGAGTTTGATCCTGGCTCAGAAGGAACGCTAGCTATATGCTTAACACATG
CAAGTCGAACGTTGTTTTCGGGGAGCTGGACAGAAGGAAAAGAGGCTCCTAGCTAAAGGTAGCCT
GTCTCGCCCAGGAGGTGAGAAGAGTTGAGAATAAAGTGGCGAACG
Found at i:501179 original size:23 final size:23
Alignment explanation
Indices: 501152--501199 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
501142 TCTTTTCTAT
501152 TCGTTATTATCTTTATTACTAAA
1 TCGTTATTATCTTTATTACTAAA
501175 TCGTTATTATCTTTATTACTAAA
1 TCGTTATTATCTTTATTACTAAA
501198 TC
1 TC
501200 AAATGACCGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.29, C:0.15, G:0.04, T:0.52
Consensus pattern (23 bp):
TCGTTATTATCTTTATTACTAAA
Left flanking sequence: Indices 500652 -- 501151
CTCAAGTCTCTAAACTTATGAAGTCTCGTTTCTGTAGTGGACCAATTCGTTAACATACCGCCGAG
CCATTTTTTATTAACATAATGACACCGAGCCTTTATTGCAGCCCATGCTACTAAGTTAGCTGCTT
TATTTTTAGTGCCAACGATTAAGAATTGTTTTCCCCTACTTGCTGCATCAAAAACCAAATCACAA
GCTTCTAATAAAAAACGAGCAGTTCTAGTAAGATTTGTAATATGAATACCTTTACGCTTTGCAGA
GATATAAGGGGCCATTTTAGGATTCCATTTCTTAGTACCATGTCCAAAATGAACTCCGGCCTTCA
TCATCTCTTCCAAATTGATGTTCCAATATCTTTTTGTCATTTCTCCACATATCCCCCCTTTTTCA
AAAAAAAAAGAGACGAGGGTATCCTGAAATAAATAATTGTTCCGATGGAACCTTCTCTTCTACCG
CAAATTAGCCGTAGATACACGACCCAAGCCATTATTCTTTTCTAT
Right flanking sequence: Indices 501200 -- 501699
AAATGACCGGACAAAATACAGATTGTTTTCAAATAAAAAGACGAATCTACTCTTAGGAATCATTA
AATCCTATAAATGATTGTTCTGGTGTATCATGGAAATTCTTTGAAAGGCAAGAATCAAAAAATTT
TCTGTGGTGGAACAAAATATCTCTCATTTCCCCCTCGAATAGATTCTTATTTTTGGTTTCCAAGG
GAATATTCTTATGTTGCCTCGAAGGGGGCACCAATCCTTTGAATCCGGTACCAACGGGTATCATT
CCCCCCAGAACAACGTTCTCTTTCAGGCCTTTCAACCAATCGATACGACCCCGGAGAGCTGCTTT
TGCTAAAACTCGAGCAGTTTCTTGAAAACTCGCTTCGGATATGAAACTTTGAGTATTCAGAGATG
CTTTTGTTATTCCCAATAAGACGGCTTGGTAACAGATCGCTTCTTCCAAAGCGCGACCCATTCGT
TCCGCTCGCAACAATCCAATAAATTCTCCGGGTAAAAAAACATTA
Found at i:516292 original size:27 final size:28
Alignment explanation
Indices: 516262--516314 Score: 72
Period size: 28 Copynumber: 1.9 Consensus size: 28
516252 ATATAATTAT
* * *
516262 TAATTATA-TATAAAATAATATAAAATA
1 TAATTATAGAATAAAAAAATAGAAAATA
516289 TAATTATAGAATAAAAAAATAGAAAA
1 TAATTATAGAATAAAAAAATAGAAAA
516315 AATACGGGGA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
27 8 0.36
28 14 0.64
ACGTcount: A:0.66, C:0.00, G:0.04, T:0.30
Consensus pattern (28 bp):
TAATTATAGAATAAAAAAATAGAAAATA
Left flanking sequence: Indices 515762 -- 516261
TACCATCTCGTGGTATATTGGCGAATTGTTGGGCCGAGCTGGATTTGAACCAGCGTAGACATATT
GCCAACGAATTTACAGTCCGTCCCCATTAACCGCTCGGGCATCGACCCAGGAAGAATCCATTTGA
GGTTTATTGGTAATCCATGATCAACTTCCTTTCGTAGTACCCTACCCCCAGGGGAAGTCGAATCC
CCGTTGCCTCCTTGAAAGAGAGATGTCCTGAACCACTAGACGATGGGGGCATACTTACCCAACAG
CCATCATACTATGTTCATAGTATGAACAGTTTTTTGAAATTGTCAATATAATGGAATGATATGAT
TCGATCCGGGGGATCTTTCCGTTTTTCATCATTTCATATTTCATAGAATTTTTGAATTCATATTC
ATGAATCATTCATTAGATTCGCTATTGTATTTGTATATAAAATACAATAGCGAATTAATATATCA
TTCTATTATATTTTATTTTAATAAAATTCTTATTAATATAATTAT
Right flanking sequence: Indices 516315 -- 516814
AATACGGGGAATACTTTCAGGGAGTGGTTGGTCCGTCAGAAAAGAAAAAGAAAAAGGGGCTCGCA
CTAAGCTCGGAAATTCACAAACAAAAAATCTGAGAAGAGGGATCAAGAAGTTATCGAAAAATTTT
TTCTATTTCTATAAGAATTTAGTTCAGGGACAAATAGAATCTCTTCATCACATGATTTGATGAAA
TATCTTGAATCTATGTCGAATTGATAGGTGTACGTGTATTAATCAAATGAATTTCGTTCTGATGG
GGATCATTTCATTCAATAAAAGAAAAGAAATTAGGATCGGTTTTGAAACGATTCATTGCTAGACT
TGCTAGGTAAATCAATTTGATTATTCAAGAATAAGCCACTATCTACTATGAGTTTACTGGATGGA
CTTATGTATATATATACTACTTATGTATATATATACTTAAGTATATAATATTATGTATATGGATA
GACTTTACCTATATAGTGGCTGATTCAGGAGTTGAATCAAACGGG
Found at i:516728 original size:19 final size:19
Alignment explanation
Indices: 516704--516741 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
516694 TACTGGATGG
516704 ACTTATGTATATATATACT
1 ACTTATGTATATATATACT
516723 ACTTATGTATATATATACT
1 ACTTATGTATATATATACT
516742 TAAGTATATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.37, C:0.11, G:0.05, T:0.47
Consensus pattern (19 bp):
ACTTATGTATATATATACT
Left flanking sequence: Indices 516204 -- 516703
AATTAATATATCATTCTATTATATTTTATTTTAATAAAATTCTTATTAATATAATTATTAATTAT
ATATAAAATAATATAAAATATAATTATAGAATAAAAAAATAGAAAAAATACGGGGAATACTTTCA
GGGAGTGGTTGGTCCGTCAGAAAAGAAAAAGAAAAAGGGGCTCGCACTAAGCTCGGAAATTCACA
AACAAAAAATCTGAGAAGAGGGATCAAGAAGTTATCGAAAAATTTTTTCTATTTCTATAAGAATT
TAGTTCAGGGACAAATAGAATCTCTTCATCACATGATTTGATGAAATATCTTGAATCTATGTCGA
ATTGATAGGTGTACGTGTATTAATCAAATGAATTTCGTTCTGATGGGGATCATTTCATTCAATAA
AAGAAAAGAAATTAGGATCGGTTTTGAAACGATTCATTGCTAGACTTGCTAGGTAAATCAATTTG
ATTATTCAAGAATAAGCCACTATCTACTATGAGTTTACTGGATGG
Right flanking sequence: Indices 516742 -- 517241
TAAGTATATAATATTATGTATATGGATAGACTTTACCTATATAGTGGCTGATTCAGGAGTTGAAT
CAAACGGGCCCTTTTAACTCAGCGGTAGAGTAACGCCATGGTAAGGCGTAAGTCATCGGTTCAAA
TCCGATAAGGGGCTTTGGCTTTTTTCATAAAACTACAGTCGTAGTATTCATATTTGAAGTGAGAA
TAGAGAGATTTTTAATAGAACAAACAACTGTATAATAATACGTTGTCATTCTACTGAGTTACTGA
GTTATAGTATAGTAGTTTAGTGAATAGTTCTAAAGTTGAACATTTGTTCAGTAAATTAGAATTAT
GATGAATAATGATAAGTCGTCTCTGGAATCACCAAACATTCCTATTTTCATTTTGCTAATCAAAT
GCATTGTAAAGATTAGAAATCAACAAAAGAAAAAAATAAATTAATAAAATAAGGATACTGTAGTA
GTTTAGTATACATAGAAATTGGAAGAATTTAGAAAGATCTTTTTT
Found at i:516743 original size:16 final size:16
Alignment explanation
Indices: 516713--516764 Score: 72
Period size: 16 Copynumber: 3.3 Consensus size: 16
516703 GACTTATGTA
516713 TATATATACTACTTATG
1 TATATATA-TACTTATG
*
516730 TATATATATACTTAAG
1 TATATATATACTTATG
516746 TATATA-ATA-TTATG
1 TATATATATACTTATG
516760 TATAT
1 TATAT
516765 GGATAGACTT
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
14 9 0.27
15 3 0.09
16 13 0.39
17 8 0.24
ACGTcount: A:0.40, C:0.06, G:0.06, T:0.48
Consensus pattern (16 bp):
TATATATATACTTATG
Left flanking sequence: Indices 516213 -- 516712
ATCATTCTATTATATTTTATTTTAATAAAATTCTTATTAATATAATTATTAATTATATATAAAAT
AATATAAAATATAATTATAGAATAAAAAAATAGAAAAAATACGGGGAATACTTTCAGGGAGTGGT
TGGTCCGTCAGAAAAGAAAAAGAAAAAGGGGCTCGCACTAAGCTCGGAAATTCACAAACAAAAAA
TCTGAGAAGAGGGATCAAGAAGTTATCGAAAAATTTTTTCTATTTCTATAAGAATTTAGTTCAGG
GACAAATAGAATCTCTTCATCACATGATTTGATGAAATATCTTGAATCTATGTCGAATTGATAGG
TGTACGTGTATTAATCAAATGAATTTCGTTCTGATGGGGATCATTTCATTCAATAAAAGAAAAGA
AATTAGGATCGGTTTTGAAACGATTCATTGCTAGACTTGCTAGGTAAATCAATTTGATTATTCAA
GAATAAGCCACTATCTACTATGAGTTTACTGGATGGACTTATGTA
Right flanking sequence: Indices 516765 -- 517264
GGATAGACTTTACCTATATAGTGGCTGATTCAGGAGTTGAATCAAACGGGCCCTTTTAACTCAGC
GGTAGAGTAACGCCATGGTAAGGCGTAAGTCATCGGTTCAAATCCGATAAGGGGCTTTGGCTTTT
TTCATAAAACTACAGTCGTAGTATTCATATTTGAAGTGAGAATAGAGAGATTTTTAATAGAACAA
ACAACTGTATAATAATACGTTGTCATTCTACTGAGTTACTGAGTTATAGTATAGTAGTTTAGTGA
ATAGTTCTAAAGTTGAACATTTGTTCAGTAAATTAGAATTATGATGAATAATGATAAGTCGTCTC
TGGAATCACCAAACATTCCTATTTTCATTTTGCTAATCAAATGCATTGTAAAGATTAGAAATCAA
CAAAAGAAAAAAATAAATTAATAAAATAAGGATACTGTAGTAGTTTAGTATACATAGAAATTGGA
AGAATTTAGAAAGATCTTTTTTTCTCAATTTCACGAACAAGATCT
Found at i:520575 original size:39 final size:39
Alignment explanation
Indices: 520520--520598 Score: 149
Period size: 39 Copynumber: 2.0 Consensus size: 39
520510 CCCATCCTTC
*
520520 AATATCATGATTGGGTCGACCAGGCCAGATCATGAGTGA
1 AATATCATGATCGGGTCGACCAGGCCAGATCATGAGTGA
520559 AATATCATGATCGGGTCGACCAGGCCAGATCATGAGTGA
1 AATATCATGATCGGGTCGACCAGGCCAGATCATGAGTGA
520598 A
1 A
520599 TAGAAAATAG
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.32, C:0.19, G:0.28, T:0.22
Consensus pattern (39 bp):
AATATCATGATCGGGTCGACCAGGCCAGATCATGAGTGA
Left flanking sequence: Indices 520020 -- 520519
TAGAATCTATCTCTCAGCGATTCTTTTCTCCGCTAATCACCCCTTCCCAACCAGCCCGCCCGATC
GATCTTGTAAGATCGGCTAATTCAAAGGGGTTAATCTGGTCTTAAGTTGTCGGAACGAATCGTTT
GCTTTATCGAAAAAAGCTTTATTAGGGGGTCCCCCTATTTTCAACCATGACAGCTGGCGTCGACC
AGCTTTGCAATACGGACGGACACGAAGAAGAACGCAGGCAGCGGAAATGCAAAAGAGAAGAGCAA
AGATTCCCGACCCAGAGCATGTTATTGACTCAACCACAAATCTGTTAAATGAAGGTAGCTTGCTT
ACTCTCAGCCACTAGTTAGAAGAAAATCCCTTGACTTCGCTTATCCCTTATGCAGTAAAGAAAGC
AAGTGAGGCGGGCTAAGATTCCATTCGAAGTAACGTAACAGGATTCGATGTTGCACCATCTTCAA
CTCTTCTCGGGATCCGGAGTTTTTCGAGAAAAGGTCCCATCCTTC
Right flanking sequence: Indices 520599 -- 521098
TAGAAAATAGAAAATGTACATAGCTGTTCCAGCCGAAATACTTGGAATAATTCTACCACTTCTAC
TAGGAGTCGCCTTTTTAGTGCTAGCTGAACGTAAAGTAATGGCTTTTGTGCAACGTCGAAAGGGT
CCTGATGTAGTGGGATCATTTGGATTGTTACAACCTCTAGCAGATGGTTTGAAATTGATTCTAAA
AGAACCTATTTCACCAAGTAGTGCTAATTTCTCCCTTTTTAGAATGGCTCCAGTGGCTACATTTA
TGTTAAGTCTGGTCGCTCGGGCCGTTGTACCTTTTGATTATGGTATGGTATTGTCAGATCCGAAC
ATAGGGCTACTTTATTTGTTTGCCATATCTTCGCTAGGTGTTTATGGAATTATTATAGCAGGTCG
GTCTAGTAATTAGGGGGCGGCCGTTCGGTCGCCTATGATACTAGGACCAATAGGTCAAAAATGGG
TTTGTGCCGCAGGTGTTGAACGATCTACTCTACACAGGTGTGGGC
Done.